Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159610 | XP_003588458.1 | 90.993 | 433 | 34 | 2 | 1 | 428 | 1 | 433 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159610 | sp|Q1H5E9|PRDA1_ARATH | 77.455 | 275 | 56 | 2 | 391 | 659 | 105 | 379 | 3.89e-142 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159610 | G7I291 | 90.993 | 433 | 34 | 2 | 1 | 428 | 1 | 433 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008680 | Msa0159610 | 0.830300 | 3.173748e-55 | -8.615850e-47 |
| Msa0020630 | Msa0159610 | 0.800266 | 1.562124e-48 | -8.615850e-47 |
| Msa0038350 | Msa0159610 | -0.837706 | 4.436629e-57 | -8.615850e-47 |
| Msa0094100 | Msa0159610 | 0.817859 | 2.650058e-52 | -8.615850e-47 |
| Msa0156650 | Msa0159610 | -0.807789 | 4.257552e-50 | -8.615850e-47 |
| Msa0159610 | Msa0185640 | -0.830619 | 2.651708e-55 | -8.615850e-47 |
| Msa0159610 | Msa0258670 | -0.802620 | 5.145318e-49 | -8.615850e-47 |
| Msa0159610 | Msa0265820 | 0.806129 | 9.554798e-50 | -8.615850e-47 |
| Msa0159610 | Msa0325470 | 0.809340 | 1.986460e-50 | -8.615850e-47 |
| Msa0159610 | Msa0342340 | -0.829686 | 4.480406e-55 | -8.615850e-47 |
| Msa0159610 | Msa0358170 | 0.804018 | 2.641728e-49 | -8.615850e-47 |
| Msa0159610 | Msa0371420 | -0.810043 | 1.402126e-50 | -8.615850e-47 |
| Msa0159610 | Msa0378080 | 0.800609 | 1.330181e-48 | -8.615850e-47 |
| Msa0159610 | Msa0423360 | -0.803439 | 3.484607e-49 | -8.615850e-47 |
| Msa0159610 | Msa0437710 | 0.810346 | 1.206563e-50 | -8.615850e-47 |
| Msa0159610 | Msa0465680 | -0.827487 | 1.522736e-54 | -8.615850e-47 |
| Msa0159610 | Msa0509970 | 0.806543 | 7.815015e-50 | -8.615850e-47 |
| Msa0159610 | Msa0518040 | 0.801498 | 8.752626e-49 | -8.615850e-47 |
| Msa0159610 | Msa0524890 | -0.817462 | 3.257409e-52 | -8.615850e-47 |
| Msa0159610 | Msa0526640 | -0.843114 | 1.709392e-58 | -8.615850e-47 |
| Msa0159610 | Msa0546380 | 0.803165 | 3.970736e-49 | -8.615850e-47 |
| Msa0159610 | Msa0566500 | -0.810793 | 9.660849e-51 | -8.615850e-47 |
| Msa0159610 | Msa0579390 | 0.801199 | 1.007589e-48 | -8.615850e-47 |
| Msa0159610 | Msa0621890 | 0.820818 | 5.611573e-53 | -8.615850e-47 |
| Msa0159610 | Msa0630990 | 0.825068 | 5.735335e-54 | -8.615850e-47 |
| Msa0159610 | Msa0638280 | 0.801682 | 8.024734e-49 | -8.615850e-47 |
| Msa0159610 | Msa0638320 | 0.802256 | 6.116970e-49 | -8.615850e-47 |
| Msa0159610 | Msa0677270 | 0.802421 | 5.654988e-49 | -8.615850e-47 |
| Msa0159610 | Msa0961420 | -0.841103 | 5.820845e-58 | -8.615850e-47 |
| Msa0159610 | Msa0980440 | 0.814548 | 1.456852e-51 | -8.615850e-47 |
| Msa0159610 | Msa1037700 | -0.819996 | 8.661780e-53 | -8.615850e-47 |
| Msa0159610 | Msa1111630 | 0.808504 | 2.997699e-50 | -8.615850e-47 |
| Msa0159610 | Msa1188940 | 0.816620 | 5.034708e-52 | -8.615850e-47 |
| Msa0159610 | Msa1204980 | -0.827244 | 1.741375e-54 | -8.615850e-47 |
| Msa0159610 | Msa1205010 | -0.831775 | 1.378431e-55 | -8.615850e-47 |
| Msa0159610 | Msa1223460 | 0.804926 | 1.708308e-49 | -8.615850e-47 |
| Msa0159610 | Msa1226510 | 0.814899 | 1.218115e-51 | -8.615850e-47 |
| Msa0159610 | Msa1256540 | -0.829193 | 5.901436e-55 | -8.615850e-47 |
| Msa0159610 | Msa1265960 | 0.806862 | 6.694252e-50 | -8.615850e-47 |
| Msa0159610 | Msa1284520 | 0.818395 | 2.005105e-52 | -8.615850e-47 |
| Msa0159610 | Msa1296960 | -0.834017 | 3.821405e-56 | -8.615850e-47 |
| Msa0159610 | Msa1347290 | 0.800907 | 1.156092e-48 | -8.615850e-47 |
| Msa0159610 | Msa1427830 | 0.820788 | 5.700218e-53 | -8.615850e-47 |
| Msa0159610 | Msa1431000 | 0.804370 | 2.232262e-49 | -8.615850e-47 |
| Msa0159610 | Msa1454110 | 0.805803 | 1.118953e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159610 | MtrunA17_Chr1g0146551 | 90.993 | 433 | 34 | 2 | 1 | 428 | 1 | 433 | 0.0 | 784 |
| Msa0159610 | MtrunA17_Chr1g0146581 | 94.697 | 264 | 14 | 0 | 391 | 654 | 103 | 366 | 1.61e-178 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159610 | AT5G48470.1 | 77.455 | 275 | 56 | 2 | 391 | 659 | 105 | 379 | 3.95e-143 | 424 |
| Msa0159610 | AT5G05240.2 | 42.683 | 164 | 70 | 5 | 187 | 333 | 84 | 240 | 1.16e-30 | 126 |
| Msa0159610 | AT5G05240.1 | 42.683 | 164 | 70 | 5 | 187 | 333 | 143 | 299 | 2.63e-30 | 126 |
| Msa0159610 | AT2G40630.3 | 44.167 | 120 | 52 | 4 | 199 | 303 | 203 | 322 | 3.43e-20 | 94.0 |
| Msa0159610 | AT2G40630.1 | 44.915 | 118 | 50 | 4 | 199 | 301 | 203 | 320 | 6.75e-20 | 94.4 |
| Msa0159610 | AT2G40630.2 | 44.915 | 118 | 50 | 4 | 199 | 301 | 203 | 320 | 7.42e-20 | 94.0 |
Find 168 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGATGCACAATCTTTA+AGG | 0.109076 | 1_4:-30246905 | None:intergenic |
| CATCCATACACGATTGAAAT+TGG | 0.142251 | 1_4:-30245157 | None:intergenic |
| TCTCGTGACAAAACAATAAA+AGG | 0.177223 | 1_4:+30244944 | Msa0159610:five_prime_UTR |
| GAACGAGTCCTCATGGATTT+TGG | 0.192385 | 1_4:+30246836 | Msa0159610:CDS |
| CTCATTGGATCTCTCTCTTT+TGG | 0.214246 | 1_4:-30246396 | None:intergenic |
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1_4:+30248963 | Msa0159610:intron |
| GCTGGTGGCGGTTTATTTAA+AGG | 0.239511 | 1_4:+30248314 | Msa0159610:CDS |
| ATCAGGTAGTCCCAGGGTTT+TGG | 0.270569 | 1_4:+30246095 | Msa0159610:CDS |
| TCGCATCTTTCACATGTTCT+AGG | 0.282682 | 1_4:-30246758 | None:intergenic |
| TTGGCTGCACAAGGAGTTAT+TGG | 0.297509 | 1_4:+30247724 | Msa0159610:CDS |
| GCATCCTCTATTGCTTCTAA+TGG | 0.316670 | 1_4:+30250832 | Msa0159610:CDS |
| GGGTTTGTGTGAAGTGAAAA+TGG | 0.319326 | 1_4:-30245093 | None:intergenic |
| ATTGCTTCAGTTGGAAGATA+TGG | 0.323656 | 1_4:+30247666 | Msa0159610:intron |
| ATTTCAACTTCAACTGTTCA+TGG | 0.325280 | 1_4:+30246450 | Msa0159610:CDS |
| AAGAAAGATCGAAAGAATTA+AGG | 0.332327 | 1_4:-30250884 | None:intergenic |
| CCAGGCTGATGATTTATTAG+AGG | 0.340782 | 1_4:+30248391 | Msa0159610:CDS |
| CAAGAGATTCAATAATTGTT+TGG | 0.346689 | 1_4:-30246650 | None:intergenic |
| AACATTGTTCAATCGTCATT+TGG | 0.348124 | 1_4:+30245988 | Msa0159610:CDS |
| ATCTTTCTTGTCAGCAATGA+TGG | 0.352373 | 1_4:+30250898 | Msa0159610:CDS |
| ATCCATACACGATTGAAATT+GGG | 0.362060 | 1_4:-30245156 | None:intergenic |
| TATGGTACAGAAAAGGCAAT+TGG | 0.362075 | 1_4:+30245958 | Msa0159610:intron |
| AGAGAGATCCAATGAGAATA+TGG | 0.362972 | 1_4:+30246403 | Msa0159610:CDS |
| CCGGATAAAAGCAGTGGATT+TGG | 0.363540 | 1_4:+30246162 | Msa0159610:CDS |
| CGGATACAATGAAGGATATC+TGG | 0.365233 | 1_4:-30246142 | None:intergenic |
| AGAAGAAAGAGAAAAGGGTT+TGG | 0.378076 | 1_4:-30245128 | None:intergenic |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1_4:+30249259 | Msa0159610:CDS |
| TCCCCAATTTCAATCGTGTA+TGG | 0.394336 | 1_4:+30245154 | Msa0159610:exon |
| CAAGATGGAAGGAGCACATC+AGG | 0.394422 | 1_4:+30246078 | Msa0159610:CDS |
| TCTTTAGTTGAGATATTTGA+TGG | 0.397800 | 1_4:+30250856 | Msa0159610:CDS |
| GGAAAGAGAAGAAAGAGAAA+AGG | 0.405697 | 1_4:-30245134 | None:intergenic |
| GAAAGAGAAGAAAGAGAAAA+GGG | 0.406997 | 1_4:-30245133 | None:intergenic |
| TCTATGTAGAACTCCCAAAA+AGG | 0.407720 | 1_4:+30248259 | Msa0159610:CDS |
| TCCAATTCAACTCACCCTTC+CGG | 0.409237 | 1_4:-30249103 | None:intergenic |
| CTCCCGCGTTTCTTCGGCAC+CGG | 0.412535 | 1_4:-30246480 | None:intergenic |
| AGGGTTTCAGTAGGATTTGC+CGG | 0.413244 | 1_4:+30249084 | Msa0159610:CDS |
| ATCTCCGTCCATATTCTCAT+TGG | 0.418166 | 1_4:-30246411 | None:intergenic |
| TTGTCACGAGACAGATCTAT+AGG | 0.426391 | 1_4:-30244932 | None:intergenic |
| CGCCGAGTTGCAGCTGGTGG+CGG | 0.436206 | 1_4:+30248302 | Msa0159610:CDS |
| AACGAACCTTTGAAGCAGAT+TGG | 0.437603 | 1_4:-30245217 | None:intergenic |
| CAGATATCCTTCATTGTATC+CGG | 0.438823 | 1_4:+30246143 | Msa0159610:CDS |
| CAAAGAGAGAACAAATCAAC+AGG | 0.439385 | 1_4:+30246544 | Msa0159610:CDS |
| AACTGTTCATGGTGGCATTC+CGG | 0.439849 | 1_4:+30246461 | Msa0159610:CDS |
| AGAAGAAGCTCGTGATATGA+TGG | 0.440285 | 1_4:+30248715 | Msa0159610:CDS |
| GGAATTGTTGTCGGAAAAGC+AGG | 0.454962 | 1_4:+30246206 | Msa0159610:CDS |
| AAATTGGTGGCCTTAAAACC+TGG | 0.455899 | 1_4:+30248979 | Msa0159610:CDS |
| TCAGTTGGAAGATATGGATA+TGG | 0.459065 | 1_4:+30247672 | Msa0159610:intron |
| GATCTTAACACTGAAGTTTG+TGG | 0.464864 | 1_4:+30246117 | Msa0159610:CDS |
| TGTTCTTTGTGAAAACTTGT+TGG | 0.467575 | 1_4:-30246321 | None:intergenic |
| AGAAACATGCCCGGGCGTAC+AGG | 0.472167 | 1_4:-30249242 | None:intergenic |
| CTTACATGATTAATAATCCC+AGG | 0.474734 | 1_4:-30246612 | None:intergenic |
| GACCGTCCAATCTGCTTCAA+AGG | 0.478163 | 1_4:+30245211 | Msa0159610:CDS |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1_4:+30249206 | Msa0159610:intron |
| ATGGTACAGAAAAGGCAATT+GGG | 0.483116 | 1_4:+30245959 | Msa0159610:intron |
| CAAGGTCGATCATGTAATCA+AGG | 0.486722 | 1_4:-30247786 | None:intergenic |
| AGATCCATTAGAAGCAATAG+AGG | 0.491751 | 1_4:-30250836 | None:intergenic |
| ATGCCCGGGCGTACAGGATG+TGG | 0.493271 | 1_4:-30249236 | None:intergenic |
| TCATGTAAGAAATAGAAAAC+AGG | 0.494158 | 1_4:+30246626 | Msa0159610:CDS |
| AAGAAGTTCCTTACCTGGGG+TGG | 0.495817 | 1_4:-30248136 | None:intergenic |
| TTAGGTGATGAGTGAGAAGA+GGG | 0.497120 | 1_4:+30245314 | Msa0159610:intron |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1_4:-30248997 | None:intergenic |
| CATCGAATGAGTGGAAGTAT+AGG | 0.503503 | 1_4:+30246720 | Msa0159610:CDS |
| CTTGAATCTGTGGTTGCTGC+AGG | 0.503538 | 1_4:+30245396 | Msa0159610:CDS |
| TGATACTAGGTCCGTGAATG+TGG | 0.505453 | 1_4:+30246296 | Msa0159610:CDS |
| CATGATCGACCTTGCTGAGA+AGG | 0.506824 | 1_4:+30247795 | Msa0159610:CDS |
| GAAGCCACATCCTGTACGCC+CGG | 0.507103 | 1_4:+30249232 | Msa0159610:CDS |
| CTACTGAATGATTTAAACCC+TGG | 0.508197 | 1_4:+30246594 | Msa0159610:CDS |
| GGGGTTCATGCTTATCTCCC+AGG | 0.512882 | 1_4:-30245347 | None:intergenic |
| TGTCATTTAGATTTGCCCCT+GGG | 0.513084 | 1_4:-30248361 | None:intergenic |
| TCCATACACGATTGAAATTG+GGG | 0.514783 | 1_4:-30245155 | None:intergenic |
| GATGCAGCGCAAGTCACTGT+TGG | 0.515901 | 1_4:+30248069 | Msa0159610:intron |
| TGAGAAGGACCAGGATGATA+AGG | 0.516393 | 1_4:+30247810 | Msa0159610:CDS |
| TGGACGGAGATGAAGCGAAA+TGG | 0.520042 | 1_4:+30246423 | Msa0159610:CDS |
| TACTGAATGATTTAAACCCT+GGG | 0.522493 | 1_4:+30246595 | Msa0159610:CDS |
| GGTGCCTTTGTCAGTGGACG+TGG | 0.524014 | 1_4:+30246038 | Msa0159610:CDS |
| AAAACCTGGGAAAGTTGTGC+TGG | 0.524406 | 1_4:+30248993 | Msa0159610:CDS |
| GAAATTGTCATCTTCAATGA+AGG | 0.527882 | 1_4:+30246962 | Msa0159610:CDS |
| TGAGAAAGTAGCAGTGGAGT+TGG | 0.529397 | 1_4:+30247705 | Msa0159610:CDS |
| AAATCATTCAGTAGTCCACT+TGG | 0.530652 | 1_4:-30246585 | None:intergenic |
| TGACAAAGAACGAGTCCTCA+TGG | 0.531969 | 1_4:+30246829 | Msa0159610:CDS |
| GGAGCACATCAGGTAGTCCC+AGG | 0.532878 | 1_4:+30246088 | Msa0159610:CDS |
| TAAGGAGAAGGAATTGTTGT+CGG | 0.533565 | 1_4:+30246197 | Msa0159610:CDS |
| CTCGTGACAAAACAATAAAA+GGG | 0.536166 | 1_4:+30244945 | Msa0159610:five_prime_UTR |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1_4:+30248775 | Msa0159610:CDS |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1_4:+30249064 | Msa0159610:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1_4:-30248788 | None:intergenic |
| TTGTTACGCCGAGTTGCAGC+TGG | 0.549323 | 1_4:+30248296 | Msa0159610:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1_4:+30248966 | Msa0159610:CDS |
| AAAATCACACCTTATCATCC+TGG | 0.554236 | 1_4:-30247819 | None:intergenic |
| GACTTGAAGATTCATATCCC+AGG | 0.555335 | 1_4:+30248344 | Msa0159610:CDS |
| TTCAGTAGGATTTGCCGGAA+GGG | 0.555402 | 1_4:+30249089 | Msa0159610:CDS |
| AGCTCGTGATATGATGGGAG+GGG | 0.555993 | 1_4:+30248721 | Msa0159610:CDS |
| TTTCAGTAGGATTTGCCGGA+AGG | 0.556491 | 1_4:+30249088 | Msa0159610:CDS |
| ACTTGTTGGTCCCACATTCA+CGG | 0.556729 | 1_4:-30246307 | None:intergenic |
| CGACCTTGCTGAGAAGGACC+AGG | 0.558031 | 1_4:+30247801 | Msa0159610:CDS |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1_4:+30249018 | Msa0159610:CDS |
| TGAGTGTGTGTTTAAGAGAG+TGG | 0.560548 | 1_4:-30245059 | None:intergenic |
| AAACACGAAAATAGGAGCAT+AGG | 0.561239 | 1_4:+30246681 | Msa0159610:CDS |
| TCTAAATGACATAGCTAACC+AGG | 0.561777 | 1_4:+30248373 | Msa0159610:CDS |
| AGCAATAGAGGATGCAGTGG+TGG | 0.561988 | 1_4:-30250824 | None:intergenic |
| AGAAGTTCCTTACCTGGGGT+GGG | 0.562953 | 1_4:-30248135 | None:intergenic |
| TCAACGCAGAAGATGATACT+AGG | 0.565961 | 1_4:+30246283 | Msa0159610:CDS |
| TTCATGCTTATCTCCCAGGT+GGG | 0.567865 | 1_4:-30245343 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1_4:+30248769 | Msa0159610:CDS |
| ATGTCATTTAGATTTGCCCC+TGG | 0.570026 | 1_4:-30248362 | None:intergenic |
| AACCGCCACCAGCTGCAACT+CGG | 0.572890 | 1_4:-30248304 | None:intergenic |
| CACCAAGGTGCCTTTGTCAG+TGG | 0.574240 | 1_4:+30246032 | Msa0159610:CDS |
| GCTCGTGATATGATGGGAGG+GGG | 0.574590 | 1_4:+30248722 | Msa0159610:CDS |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1_4:-30249250 | None:intergenic |
| TTACATGATTAATAATCCCA+GGG | 0.576690 | 1_4:-30246611 | None:intergenic |
| CAAAAGAAGAGCAAGATGGA+AGG | 0.579626 | 1_4:+30246067 | Msa0159610:CDS |
| TGGTAAGAGAGTTGATCAGA+TGG | 0.580714 | 1_4:+30247744 | Msa0159610:CDS |
| CCTCTAATAAATCATCAGCC+TGG | 0.582816 | 1_4:-30248391 | None:intergenic |
| AGAATCTGAGAAAGTAGCAG+TGG | 0.584761 | 1_4:+30247699 | Msa0159610:CDS |
| TGAGAAACTCAGTAAGGAGA+AGG | 0.588059 | 1_4:+30246185 | Msa0159610:CDS |
| TTTAGGTGATGAGTGAGAAG+AGG | 0.588914 | 1_4:+30245313 | Msa0159610:intron |
| GAAGAAGCTCGTGATATGAT+GGG | 0.589763 | 1_4:+30248716 | Msa0159610:CDS |
| GAAGAGGGTTAATACCCACC+TGG | 0.590703 | 1_4:+30245329 | Msa0159610:CDS |
| TTGTATCCGGATAAAAGCAG+TGG | 0.593470 | 1_4:+30246156 | Msa0159610:CDS |
| TTCCGGTGCCGAAGAAACGC+GGG | 0.596896 | 1_4:+30246478 | Msa0159610:CDS |
| GCAGTGGAGTTGGCTGCACA+AGG | 0.598277 | 1_4:+30247715 | Msa0159610:CDS |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1_4:+30249075 | Msa0159610:CDS |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1_4:+30249210 | Msa0159610:intron |
| ACTTGAAGATTCATATCCCA+GGG | 0.598867 | 1_4:+30248345 | Msa0159610:CDS |
| GTTCATGCTTATCTCCCAGG+TGG | 0.599075 | 1_4:-30245344 | None:intergenic |
| GTTTCAAAAGAAGAGCAAGA+TGG | 0.600220 | 1_4:+30246063 | Msa0159610:CDS |
| AATTGGTGGCCTTAAAACCT+GGG | 0.600896 | 1_4:+30248980 | Msa0159610:CDS |
| GTGTTAAGATCCAAAACCCT+GGG | 0.601860 | 1_4:-30246105 | None:intergenic |
| TTACGCCGAGTTGCAGCTGG+TGG | 0.603081 | 1_4:+30248299 | Msa0159610:CDS |
| AACCTTTGAAGCAGATTGGA+CGG | 0.604309 | 1_4:-30245213 | None:intergenic |
| GATGGAATCTGATTTCATGA+TGG | 0.604669 | 1_4:+30247762 | Msa0159610:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1_4:-30249251 | None:intergenic |
| CAAGCAGCACATCGAATGAG+TGG | 0.606439 | 1_4:+30246711 | Msa0159610:CDS |
| CAGGAAAGAGAACAACTTGG+TGG | 0.607354 | 1_4:+30246225 | Msa0159610:CDS |
| GAAGTATAGGCGTTAACAAG+AGG | 0.608696 | 1_4:+30246733 | Msa0159610:CDS |
| AAGCTCGTGATATGATGGGA+GGG | 0.609289 | 1_4:+30248720 | Msa0159610:CDS |
| AATGAAAGATCTTGAATCTG+TGG | 0.610845 | 1_4:+30245386 | Msa0159610:CDS |
| ATTCCGGTGCCGAAGAAACG+CGG | 0.611585 | 1_4:+30246477 | Msa0159610:CDS |
| GTCCACTGACAAAGGCACCT+TGG | 0.612422 | 1_4:-30246034 | None:intergenic |
| ACATCCACGTCCACTGACAA+AGG | 0.613781 | 1_4:-30246042 | None:intergenic |
| CATCCTGGTCCTTCTCAGCA+AGG | 0.614327 | 1_4:-30247804 | None:intergenic |
| ATTTGGTGAGAAACTCAGTA+AGG | 0.617815 | 1_4:+30246179 | Msa0159610:CDS |
| GAAAGAGAACAACTTGGTGG+TGG | 0.618516 | 1_4:+30246228 | Msa0159610:CDS |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1_4:+30249030 | Msa0159610:CDS |
| ACAAAGATTGCAGCTCCAAG+TGG | 0.624079 | 1_4:+30246570 | Msa0159610:CDS |
| AAGTATAGGCGTTAACAAGA+GGG | 0.629743 | 1_4:+30246734 | Msa0159610:CDS |
| AGTGTTAAGATCCAAAACCC+TGG | 0.632315 | 1_4:-30246106 | None:intergenic |
| AAGCCACATCCTGTACGCCC+GGG | 0.634835 | 1_4:+30249233 | Msa0159610:CDS |
| AAGGTCGATCATGTAATCAA+GGG | 0.636967 | 1_4:-30247785 | None:intergenic |
| AGATCCAATGAGAATATGGA+CGG | 0.638354 | 1_4:+30246407 | Msa0159610:CDS |
| GATACTAGGTCCGTGAATGT+GGG | 0.638574 | 1_4:+30246297 | Msa0159610:CDS |
| CTCGTGATATGATGGGAGGG+GGG | 0.642959 | 1_4:+30248723 | Msa0159610:CDS |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1_4:-30248766 | None:intergenic |
| GAAGCTCGTGATATGATGGG+AGG | 0.646611 | 1_4:+30248719 | Msa0159610:CDS |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1_4:+30249045 | Msa0159610:CDS |
| AAGAGGGTTAATACCCACCT+GGG | 0.652095 | 1_4:+30245330 | Msa0159610:CDS |
| AGAAGCAATAGAGGATGCAG+TGG | 0.658619 | 1_4:-30250827 | None:intergenic |
| TTGGACGAAAGAAATGACCG+TGG | 0.661469 | 1_4:+30248749 | Msa0159610:CDS |
| TCAACTTCAACTGTTCATGG+TGG | 0.666173 | 1_4:+30246453 | Msa0159610:CDS |
| AAGCAGGAAAGAGAACAACT+TGG | 0.671542 | 1_4:+30246222 | Msa0159610:CDS |
| GAGCACATCAGGTAGTCCCA+GGG | 0.680059 | 1_4:+30246089 | Msa0159610:CDS |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1_4:+30249065 | Msa0159610:CDS |
| CGGTGCCGAAGAAACGCGGG+AGG | 0.695908 | 1_4:+30246481 | Msa0159610:CDS |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1_4:-30248785 | None:intergenic |
| GAACACGAGAGGAATTAATG+TGG | 0.701018 | 1_4:+30246257 | Msa0159610:CDS |
| TGAGATGTCACAAATCACCA+AGG | 0.717810 | 1_4:+30246017 | Msa0159610:CDS |
| GGTGGTGATGTGAACACGAG+AGG | 0.718627 | 1_4:+30246246 | Msa0159610:CDS |
| TTTACCCTCCAAAATCCATG+AGG | 0.742859 | 1_4:-30246844 | None:intergenic |
| CTTGAAGATTCATATCCCAG+GGG | 0.774008 | 1_4:+30248346 | Msa0159610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGAAATTGAATTTTTTT+GGG | - | chr1_4:30245008-30245027 | None:intergenic | 10.0% |
| !!! | AAATTGAAATTGAATTTTTT+TGG | - | chr1_4:30245009-30245028 | None:intergenic | 10.0% |
| !! | AAAATCAAATATATATAAGA+AGG | + | chr1_4:30247264-30247283 | Msa0159610:intron | 10.0% |
| !! | AAATCAAATATATATAAGAA+GGG | + | chr1_4:30247265-30247284 | Msa0159610:intron | 10.0% |
| !!! | ATTGAAATTGAATTTTTTTG+GGG | - | chr1_4:30245007-30245026 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTTTTTTTTC+TGG | + | chr1_4:30245290-30245309 | Msa0159610:intron | 15.0% |
| !! | TGTAAATGATATTTCATATT+TGG | + | chr1_4:30245538-30245557 | Msa0159610:intron | 15.0% |
| !! | ACTTTATGAATATTCATAAA+AGG | - | chr1_4:30245808-30245827 | None:intergenic | 15.0% |
| !! | AATAATGCATAATAAAAACA+AGG | + | chr1_4:30247114-30247133 | Msa0159610:intron | 15.0% |
| !! | ATAATGCATAATAAAAACAA+GGG | + | chr1_4:30247115-30247134 | Msa0159610:intron | 15.0% |
| !! | ACATATAATTGTAAAATACT+TGG | + | chr1_4:30249332-30249351 | Msa0159610:intron | 15.0% |
| !! | NNNNNNNNNGAGTAATAATC+AGG | - | chr1_4:30249441-30249460 | None:intergenic | 15.0% |
| !!! | ACATCTTTTTTAATTATCAT+GGG | - | chr1_4:30249696-30249715 | None:intergenic | 15.0% |
| !! | TCAAAACTCATCAAAAAAAA+TGG | - | chr1_4:30245278-30245297 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTTTTCTGGTTT+AGG | + | chr1_4:30245296-30245315 | Msa0159610:intron | 20.0% |
| !! | ATAGTAAGTTGTTGAATATT+AGG | - | chr1_4:30245695-30245714 | None:intergenic | 20.0% |
| !! | AATAAAATTTGATAGAGTCA+AGG | + | chr1_4:30245781-30245800 | Msa0159610:intron | 20.0% |
| !! | TTATGAATATTCATAAAGTC+AGG | + | chr1_4:30245809-30245828 | Msa0159610:intron | 20.0% |
| !! | TATGAATATTCATAAAGTCA+GGG | + | chr1_4:30245810-30245829 | Msa0159610:intron | 20.0% |
| !! | TAATGCATAATAAAAACAAG+GGG | + | chr1_4:30247116-30247135 | Msa0159610:intron | 20.0% |
| !! | AGATAGTAATAGATTATAGT+TGG | - | chr1_4:30247915-30247934 | None:intergenic | 20.0% |
| !! | AATCTATTACTATCTACATT+TGG | + | chr1_4:30247920-30247939 | Msa0159610:intron | 20.0% |
| !!! | AAATGGTATTTTGGTTAATT+TGG | - | chr1_4:30247984-30248003 | None:intergenic | 20.0% |
| !! | TTAAATCTATACATATCTAG+TGG | - | chr1_4:30248880-30248899 | None:intergenic | 20.0% |
| !! | ACCATTCATCATAAAAAATA+TGG | - | chr1_4:30249295-30249314 | None:intergenic | 20.0% |
| !! | ATATATCAATAACTGAGTAT+GGG | - | chr1_4:30249416-30249435 | None:intergenic | 20.0% |
| !! | TATATATCAATAACTGAGTA+TGG | - | chr1_4:30249417-30249436 | None:intergenic | 20.0% |
| !! | TGATTCTTAATTCATTTGAT+TGG | - | chr1_4:30249665-30249684 | None:intergenic | 20.0% |
| !! | ATCAAATGAATTAAGAATCA+CGG | + | chr1_4:30249665-30249684 | Msa0159610:intron | 20.0% |
| !!! | GACATCTTTTTTAATTATCA+TGG | - | chr1_4:30249697-30249716 | None:intergenic | 20.0% |
| !!! | TAATTTTTAAGTGAATGCTA+TGG | - | chr1_4:30249965-30249984 | None:intergenic | 20.0% |
| !!! | TGAATTTTTTTGGGGATAAA+GGG | - | chr1_4:30244999-30245018 | None:intergenic | 25.0% |
| !!! | TTGAATTTTTTTGGGGATAA+AGG | - | chr1_4:30245000-30245019 | None:intergenic | 25.0% |
| ! | AGGTAATTTCATTATTGGAT+TGG | + | chr1_4:30245416-30245435 | Msa0159610:intron | 25.0% |
| ! | GGTAATTTCATTATTGGATT+GGG | + | chr1_4:30245417-30245436 | Msa0159610:intron | 25.0% |
| ! | GGTTTAAATTTACATGCATA+TGG | + | chr1_4:30245438-30245457 | Msa0159610:intron | 25.0% |
| ! | TTTGTTGAACATCCTTAAAT+AGG | + | chr1_4:30245610-30245629 | Msa0159610:intron | 25.0% |
| ! | AGATTATGAGTATTTCAGAA+AGG | + | chr1_4:30245639-30245658 | Msa0159610:intron | 25.0% |
| ! | ATAGTAAGTGGATAAACTTA+AGG | - | chr1_4:30245722-30245741 | None:intergenic | 25.0% |
| ! | TACAAAGTTAGAGACTAATT+TGG | + | chr1_4:30245851-30245870 | Msa0159610:intron | 25.0% |
| !! | CTATATTGTTGTATGCATTT+TGG | + | chr1_4:30245883-30245902 | Msa0159610:intron | 25.0% |
| !! | ATGATACGCTTTTGTATTTA+TGG | + | chr1_4:30245940-30245959 | Msa0159610:intron | 25.0% |
| ! | TTGTATTTATGGTACAGAAA+AGG | + | chr1_4:30245951-30245970 | Msa0159610:intron | 25.0% |
| ! | TGAAATTCTTGAGCAAAAAA+TGG | + | chr1_4:30246515-30246534 | Msa0159610:CDS | 25.0% |
| ! | TTACATGATTAATAATCCCA+GGG | - | chr1_4:30246614-30246633 | None:intergenic | 25.0% |
| ! | TCATGTAAGAAATAGAAAAC+AGG | + | chr1_4:30246626-30246645 | Msa0159610:CDS | 25.0% |
| ! | CAAGAGATTCAATAATTGTT+TGG | - | chr1_4:30246653-30246672 | None:intergenic | 25.0% |
| ! | TAACTGAAAAACACGAAAAT+AGG | + | chr1_4:30246673-30246692 | Msa0159610:CDS | 25.0% |
| ! | AGAATCATCAAATGTTACAA+CGG | + | chr1_4:30247016-30247035 | Msa0159610:intron | 25.0% |
| ! | AAACATAAGCAAAAGGAAAA+TGG | - | chr1_4:30247071-30247090 | None:intergenic | 25.0% |
| ! | GGAAAATTAATCTTCACATT+AGG | + | chr1_4:30247176-30247195 | Msa0159610:intron | 25.0% |
| ! | TAGTATAGATGTCATCTAAT+GGG | + | chr1_4:30247200-30247219 | Msa0159610:intron | 25.0% |
| !!! | CTTGATATGTTGATTTCAAT+CGG | + | chr1_4:30247476-30247495 | Msa0159610:intron | 25.0% |
| ! | AAGAAAAAGAAATGTTTGCA+AGG | - | chr1_4:30247539-30247558 | None:intergenic | 25.0% |
| !! | TTGCAAACATTTCTTTTTCT+TGG | + | chr1_4:30247538-30247557 | Msa0159610:intron | 25.0% |
| ! | AAATGTATACATGTAACGTA+GGG | - | chr1_4:30247643-30247662 | None:intergenic | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | + | chr1_4:30248233-30248252 | Msa0159610:intron | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | - | chr1_4:30248456-30248475 | None:intergenic | 25.0% |
| !! | AACAGTGTTTAAAATTCATG+TGG | - | chr1_4:30248616-30248635 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | + | chr1_4:30248637-30248656 | Msa0159610:intron | 25.0% |
| !! | ATTCTGTTGTTTGTGTTAAA+AGG | + | chr1_4:30248842-30248861 | Msa0159610:intron | 25.0% |
| !! | TTCTGTTGTTTGTGTTAAAA+GGG | + | chr1_4:30248843-30248862 | Msa0159610:intron | 25.0% |
| !!! | GCCATATTTTTTATGATGAA+TGG | + | chr1_4:30249291-30249310 | Msa0159610:intron | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | + | chr1_4:30249358-30249377 | Msa0159610:intron | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | + | chr1_4:30249359-30249378 | Msa0159610:intron | 25.0% |
| ! | GTTATCAAAGTAAAACAGTT+TGG | - | chr1_4:30249388-30249407 | None:intergenic | 25.0% |
| !! | TTCTTATAGTTCAAGTTTAG+AGG | + | chr1_4:30250370-30250389 | Msa0159610:intron | 25.0% |
| !!! | AGAGAAAATCTTAGTTCTTT+TGG | + | chr1_4:30250466-30250485 | Msa0159610:intron | 25.0% |
| !!! | GAGAAAATCTTAGTTCTTTT+GGG | + | chr1_4:30250467-30250486 | Msa0159610:intron | 25.0% |
| ! | AGACACAAAATAAAGTTCAT+TGG | - | chr1_4:30250777-30250796 | None:intergenic | 25.0% |
| ! | TCTTTAGTTGAGATATTTGA+TGG | + | chr1_4:30250856-30250875 | Msa0159610:CDS | 25.0% |
| ! | AAGAAAGATCGAAAGAATTA+AGG | - | chr1_4:30250887-30250906 | None:intergenic | 25.0% |
| TCTCGTGACAAAACAATAAA+AGG | + | chr1_4:30244944-30244963 | Msa0159610:five_prime_UTR | 30.0% | |
| CTCGTGACAAAACAATAAAA+GGG | + | chr1_4:30244945-30244964 | Msa0159610:five_prime_UTR | 30.0% | |
| !!! | GGGTTTGGATTTTGAAATTA+GGG | - | chr1_4:30245116-30245135 | None:intergenic | 30.0% |
| !!! | AGGGTTTGGATTTTGAAATT+AGG | - | chr1_4:30245117-30245136 | None:intergenic | 30.0% |
| GAAAGAGAAGAAAGAGAAAA+GGG | - | chr1_4:30245136-30245155 | None:intergenic | 30.0% | |
| ATCCATACACGATTGAAATT+GGG | - | chr1_4:30245159-30245178 | None:intergenic | 30.0% | |
| !! | ATTTTGACACGTTTTCTAAG+GGG | - | chr1_4:30245369-30245388 | None:intergenic | 30.0% |
| !! | CATTTTGACACGTTTTCTAA+GGG | - | chr1_4:30245370-30245389 | None:intergenic | 30.0% |
| !! | TCATTTTGACACGTTTTCTA+AGG | - | chr1_4:30245371-30245390 | None:intergenic | 30.0% |
| AATGAAAGATCTTGAATCTG+TGG | + | chr1_4:30245386-30245405 | Msa0159610:CDS | 30.0% | |
| TAATCTCAAGGACCTATTTA+AGG | - | chr1_4:30245625-30245644 | None:intergenic | 30.0% | |
| CTGAAATACTCATAATCTCA+AGG | - | chr1_4:30245637-30245656 | None:intergenic | 30.0% | |
| GAATATTAGGACCAATTTGT+CGG | - | chr1_4:30245682-30245701 | None:intergenic | 30.0% | |
| ! | AGGACTAAATTGATAGTAAG+TGG | - | chr1_4:30245734-30245753 | None:intergenic | 30.0% |
| GTCCTTATTGTATTCTTTGA+TGG | + | chr1_4:30245749-30245768 | Msa0159610:intron | 30.0% | |
| GTCCATCAAAGAATACAATA+AGG | - | chr1_4:30245754-30245773 | None:intergenic | 30.0% | |
| AAAGTTAGAGACTAATTTGG+TGG | + | chr1_4:30245854-30245873 | Msa0159610:intron | 30.0% | |
| AACATTGTTCAATCGTCATT+TGG | + | chr1_4:30245988-30246007 | Msa0159610:CDS | 30.0% | |
| TGTTCTTTGTGAAAACTTGT+TGG | - | chr1_4:30246324-30246343 | None:intergenic | 30.0% | |
| ! | ACAAGTTTTCACAAAGAACA+TGG | + | chr1_4:30246324-30246343 | Msa0159610:CDS | 30.0% |
| !! | ACATGGTCATTTTAAGTCAA+AGG | + | chr1_4:30246341-30246360 | Msa0159610:CDS | 30.0% |
| ATTTCAACTTCAACTGTTCA+TGG | + | chr1_4:30246450-30246469 | Msa0159610:CDS | 30.0% | |
| TACTGAATGATTTAAACCCT+GGG | + | chr1_4:30246595-30246614 | Msa0159610:CDS | 30.0% | |
| CTTACATGATTAATAATCCC+AGG | - | chr1_4:30246615-30246634 | None:intergenic | 30.0% | |
| GCTTGTTCATGATAAAAAGT+AGG | - | chr1_4:30246795-30246814 | None:intergenic | 30.0% | |
| CATTTGATGCACAATCTTTA+AGG | - | chr1_4:30246908-30246927 | None:intergenic | 30.0% | |
| GAAATTGTCATCTTCAATGA+AGG | + | chr1_4:30246962-30246981 | Msa0159610:CDS | 30.0% | |
| TGATTCTTCATTCGACATAT+TGG | - | chr1_4:30247003-30247022 | None:intergenic | 30.0% | |
| GTTTCATCTCTTTCTCTAAA+AGG | + | chr1_4:30247038-30247057 | Msa0159610:intron | 30.0% | |
| AGACAAGAAACATAAGCAAA+AGG | - | chr1_4:30247078-30247097 | None:intergenic | 30.0% | |
| CTAGTATAGATGTCATCTAA+TGG | + | chr1_4:30247199-30247218 | Msa0159610:intron | 30.0% | |
| GTACCATAAAAAGTTGTCTA+GGG | + | chr1_4:30247222-30247241 | Msa0159610:intron | 30.0% | |
| ! | ATACCCTAGACAACTTTTTA+TGG | - | chr1_4:30247228-30247247 | None:intergenic | 30.0% |
| ! | TGATTTTACAAGCTGAAACA+TGG | - | chr1_4:30247251-30247270 | None:intergenic | 30.0% |
| TGAAATCAACATATCAAGAC+AGG | - | chr1_4:30247474-30247493 | None:intergenic | 30.0% | |
| GTTGAACTTGAATTTCAATG+TGG | + | chr1_4:30247603-30247622 | Msa0159610:intron | 30.0% | |
| AATGTATACATGTAACGTAG+GGG | - | chr1_4:30247642-30247661 | None:intergenic | 30.0% | |
| CAAATGTATACATGTAACGT+AGG | - | chr1_4:30247644-30247663 | None:intergenic | 30.0% | |
| !! | ACATTTGTTATTGCTTCAGT+TGG | + | chr1_4:30247657-30247676 | Msa0159610:intron | 30.0% |
| ! | TTGGTTAATTTGGTCTGTTA+GGG | - | chr1_4:30247974-30247993 | None:intergenic | 30.0% |
| ! | TTTGGTTAATTTGGTCTGTT+AGG | - | chr1_4:30247975-30247994 | None:intergenic | 30.0% |
| ATCGAAATATATGCACAGTT+AGG | - | chr1_4:30248052-30248071 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+AGG | - | chr1_4:30248195-30248214 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | - | chr1_4:30248230-30248249 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | - | chr1_4:30248231-30248250 | None:intergenic | 30.0% | |
| ! | TCATATCTGCTTTCCTTTTT+GGG | - | chr1_4:30248275-30248294 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | - | chr1_4:30248276-30248295 | None:intergenic | 30.0% |
| GTGAAAAATAATTCTTGCCA+AGG | + | chr1_4:30248587-30248606 | Msa0159610:intron | 30.0% | |
| TAAAATTCATGTGGTTTCCT+TGG | - | chr1_4:30248607-30248626 | None:intergenic | 30.0% | |
| CGTTGCAAAAAATATGCTTT+CGG | + | chr1_4:30248915-30248934 | Msa0159610:intron | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | + | chr1_4:30248963-30248982 | Msa0159610:intron | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | + | chr1_4:30248966-30248985 | Msa0159610:CDS | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | + | chr1_4:30249018-30249037 | Msa0159610:CDS | 30.0% | |
| ACTCAAATGTGAACAATTAC+TGG | + | chr1_4:30249567-30249586 | Msa0159610:intron | 30.0% | |
| AAAAAGAAAGGCAAAAGCAA+AGG | + | chr1_4:30249834-30249853 | Msa0159610:intron | 30.0% | |
| TCTAACAGTTACTTACGATT+GGG | + | chr1_4:30250093-30250112 | Msa0159610:intron | 30.0% | |
| !! | ACACACATTTTAGTGTTTCA+AGG | + | chr1_4:30250116-30250135 | Msa0159610:intron | 30.0% |
| !! | CACACATTTTAGTGTTTCAA+GGG | + | chr1_4:30250117-30250136 | Msa0159610:intron | 30.0% |
| TTGGGAATAATCATTACCTA+CGG | + | chr1_4:30250485-30250504 | Msa0159610:intron | 30.0% | |
| AGGAAGGATGTCTATAAATT+TGG | + | chr1_4:30250674-30250693 | Msa0159610:intron | 30.0% | |
| TCTATAAATTTGGCATAGAG+AGG | + | chr1_4:30250684-30250703 | Msa0159610:intron | 30.0% | |
| AGAAGAAAGAGAAAAGGGTT+TGG | - | chr1_4:30245131-30245150 | None:intergenic | 35.0% | |
| GGAAAGAGAAGAAAGAGAAA+AGG | - | chr1_4:30245137-30245156 | None:intergenic | 35.0% | |
| TCCATACACGATTGAAATTG+GGG | - | chr1_4:30245158-30245177 | None:intergenic | 35.0% | |
| CATCCATACACGATTGAAAT+TGG | - | chr1_4:30245160-30245179 | None:intergenic | 35.0% | |
| GCTGCAGGTAATTTCATTAT+TGG | + | chr1_4:30245411-30245430 | Msa0159610:intron | 35.0% | |
| ACTCTCTTAAACCGACAAAT+TGG | + | chr1_4:30245668-30245687 | Msa0159610:intron | 35.0% | |
| TATGGTACAGAAAAGGCAAT+TGG | + | chr1_4:30245958-30245977 | Msa0159610:intron | 35.0% | |
| ATGGTACAGAAAAGGCAATT+GGG | + | chr1_4:30245959-30245978 | Msa0159610:intron | 35.0% | |
| GTTTCAAAAGAAGAGCAAGA+TGG | + | chr1_4:30246063-30246082 | Msa0159610:CDS | 35.0% | |
| GATCTTAACACTGAAGTTTG+TGG | + | chr1_4:30246117-30246136 | Msa0159610:CDS | 35.0% | |
| CAGATATCCTTCATTGTATC+CGG | + | chr1_4:30246143-30246162 | Msa0159610:CDS | 35.0% | |
| ! | CTTTTATCCGGATACAATGA+AGG | - | chr1_4:30246153-30246172 | None:intergenic | 35.0% |
| ! | ATTTGGTGAGAAACTCAGTA+AGG | + | chr1_4:30246179-30246198 | Msa0159610:CDS | 35.0% |
| TAAGGAGAAGGAATTGTTGT+CGG | + | chr1_4:30246197-30246216 | Msa0159610:CDS | 35.0% | |
| AGAGAGATCCAATGAGAATA+TGG | + | chr1_4:30246403-30246422 | Msa0159610:CDS | 35.0% | |
| AGATCCAATGAGAATATGGA+CGG | + | chr1_4:30246407-30246426 | Msa0159610:CDS | 35.0% | |
| CAAAGAGAGAACAAATCAAC+AGG | + | chr1_4:30246544-30246563 | Msa0159610:CDS | 35.0% | |
| AAATCATTCAGTAGTCCACT+TGG | - | chr1_4:30246588-30246607 | None:intergenic | 35.0% | |
| CTACTGAATGATTTAAACCC+TGG | + | chr1_4:30246594-30246613 | Msa0159610:CDS | 35.0% | |
| ! | AAACACGAAAATAGGAGCAT+AGG | + | chr1_4:30246681-30246700 | Msa0159610:CDS | 35.0% |
| AAGTATAGGCGTTAACAAGA+GGG | + | chr1_4:30246734-30246753 | Msa0159610:CDS | 35.0% | |
| GCATACAATGTAGAAAAAGC+TGG | + | chr1_4:30246882-30246901 | Msa0159610:CDS | 35.0% | |
| TTCTTCATTCGACATATTGG+TGG | - | chr1_4:30247000-30247019 | None:intergenic | 35.0% | |
| GCATAATAAAAACAAGGGGT+TGG | + | chr1_4:30247120-30247139 | Msa0159610:intron | 35.0% | |
| GGTACCATAAAAAGTTGTCT+AGG | + | chr1_4:30247221-30247240 | Msa0159610:intron | 35.0% | |
| ATTGCTTCAGTTGGAAGATA+TGG | + | chr1_4:30247666-30247685 | Msa0159610:intron | 35.0% | |
| TCAGTTGGAAGATATGGATA+TGG | + | chr1_4:30247672-30247691 | Msa0159610:intron | 35.0% | |
| GATGGAATCTGATTTCATGA+TGG | + | chr1_4:30247762-30247781 | Msa0159610:CDS | 35.0% | |
| AAGGTCGATCATGTAATCAA+GGG | - | chr1_4:30247788-30247807 | None:intergenic | 35.0% | |
| AAAATCACACCTTATCATCC+TGG | - | chr1_4:30247822-30247841 | None:intergenic | 35.0% | |
| ! | TGCTAGGCTAAATGGTATTT+TGG | - | chr1_4:30247993-30248012 | None:intergenic | 35.0% |
| !! | ATTAAGCTTGCTAGGCTAAA+TGG | - | chr1_4:30248001-30248020 | None:intergenic | 35.0% |
| ! | TTGCGATTATTAAGCTTGCT+AGG | - | chr1_4:30248009-30248028 | None:intergenic | 35.0% |
| TTAAAGAAGTTCCTTACCTG+GGG | - | chr1_4:30248142-30248161 | None:intergenic | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | - | chr1_4:30248143-30248162 | None:intergenic | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | + | chr1_4:30248259-30248278 | Msa0159610:CDS | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | + | chr1_4:30248345-30248364 | Msa0159610:CDS | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | + | chr1_4:30248373-30248392 | Msa0159610:CDS | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | + | chr1_4:30248499-30248518 | Msa0159610:intron | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | + | chr1_4:30248512-30248531 | Msa0159610:intron | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | + | chr1_4:30248516-30248535 | Msa0159610:intron | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | - | chr1_4:30248769-30248788 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | + | chr1_4:30248769-30248788 | Msa0159610:CDS | 35.0% | |
| TTGTTTGTGTTAAAAGGGCT+TGG | + | chr1_4:30248848-30248867 | Msa0159610:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | + | chr1_4:30248933-30248952 | Msa0159610:intron | 35.0% | |
| ! | CACCAATTAATGAAAGCACA+AGG | + | chr1_4:30249761-30249780 | Msa0159610:intron | 35.0% |
| TGCCTTGTGCTTTCATTAAT+TGG | - | chr1_4:30249766-30249785 | None:intergenic | 35.0% | |
| !! | GAGATGATGGAGAAAAAGAA+AGG | + | chr1_4:30249822-30249841 | Msa0159610:intron | 35.0% |
| ATAAGCTTCTTGTCAATCGT+AGG | - | chr1_4:30250031-30250050 | None:intergenic | 35.0% | |
| GTCTAACAGTTACTTACGAT+TGG | + | chr1_4:30250092-30250111 | Msa0159610:intron | 35.0% | |
| TAGTGTTTCAAGGGAAACTT+TGG | + | chr1_4:30250126-30250145 | Msa0159610:intron | 35.0% | |
| TCGTACTATATTGTGTATCG+CGG | - | chr1_4:30250237-30250256 | None:intergenic | 35.0% | |
| !! | TACGAAGTGTTGTCAAATAG+AGG | + | chr1_4:30250252-30250271 | Msa0159610:intron | 35.0% |
| TAAGAATTGCTACAAGCTTC+AGG | - | chr1_4:30250356-30250375 | None:intergenic | 35.0% | |
| TCAAGTTTAGAGGATTTGTC+AGG | + | chr1_4:30250380-30250399 | Msa0159610:intron | 35.0% | |
| ATCATTACCTACGGACATTT+AGG | + | chr1_4:30250494-30250513 | Msa0159610:intron | 35.0% | |
| ATGAAAACCTAAATGTCCGT+AGG | - | chr1_4:30250504-30250523 | None:intergenic | 35.0% | |
| !! | TACGGACATTTAGGTTTTCA+TGG | + | chr1_4:30250503-30250522 | Msa0159610:intron | 35.0% |
| ! | ATTTTGTGTCTCTGATGTCA+CGG | + | chr1_4:30250786-30250805 | Msa0159610:intron | 35.0% |
| AGATCCATTAGAAGCAATAG+AGG | - | chr1_4:30250839-30250858 | None:intergenic | 35.0% | |
| ATCTTTCTTGTCAGCAATGA+TGG | + | chr1_4:30250898-30250917 | Msa0159610:CDS | 35.0% | |
| TTGTCACGAGACAGATCTAT+AGG | - | chr1_4:30244935-30244954 | None:intergenic | 40.0% | |
| GGGATAAAGGGAAAAATCGT+GGG | - | chr1_4:30244987-30245006 | None:intergenic | 40.0% | |
| TGAGTGTGTGTTTAAGAGAG+TGG | - | chr1_4:30245062-30245081 | None:intergenic | 40.0% | |
| GGGTTTGTGTGAAGTGAAAA+TGG | - | chr1_4:30245096-30245115 | None:intergenic | 40.0% | |
| TCCCCAATTTCAATCGTGTA+TGG | + | chr1_4:30245154-30245173 | Msa0159610:exon | 40.0% | |
| !! | AACCTTTGAAGCAGATTGGA+CGG | - | chr1_4:30245216-30245235 | None:intergenic | 40.0% |
| !! | AACGAACCTTTGAAGCAGAT+TGG | - | chr1_4:30245220-30245239 | None:intergenic | 40.0% |
| TTTAGGTGATGAGTGAGAAG+AGG | + | chr1_4:30245313-30245332 | Msa0159610:intron | 40.0% | |
| TTAGGTGATGAGTGAGAAGA+GGG | + | chr1_4:30245314-30245333 | Msa0159610:intron | 40.0% | |
| !! | TTTGTCGGTTTAAGAGAGTC+AGG | - | chr1_4:30245667-30245686 | None:intergenic | 40.0% |
| TGAGATGTCACAAATCACCA+AGG | + | chr1_4:30246017-30246036 | Msa0159610:CDS | 40.0% | |
| CAAAAGAAGAGCAAGATGGA+AGG | + | chr1_4:30246067-30246086 | Msa0159610:CDS | 40.0% | |
| GTGTTAAGATCCAAAACCCT+GGG | - | chr1_4:30246108-30246127 | None:intergenic | 40.0% | |
| AGTGTTAAGATCCAAAACCC+TGG | - | chr1_4:30246109-30246128 | None:intergenic | 40.0% | |
| CGGATACAATGAAGGATATC+TGG | - | chr1_4:30246145-30246164 | None:intergenic | 40.0% | |
| TTGTATCCGGATAAAAGCAG+TGG | + | chr1_4:30246156-30246175 | Msa0159610:CDS | 40.0% | |
| !! | CCAAATCCACTGCTTTTATC+CGG | - | chr1_4:30246165-30246184 | None:intergenic | 40.0% |
| TGAGAAACTCAGTAAGGAGA+AGG | + | chr1_4:30246185-30246204 | Msa0159610:CDS | 40.0% | |
| AAGCAGGAAAGAGAACAACT+TGG | + | chr1_4:30246222-30246241 | Msa0159610:CDS | 40.0% | |
| GAACACGAGAGGAATTAATG+TGG | + | chr1_4:30246257-30246276 | Msa0159610:CDS | 40.0% | |
| TCAACGCAGAAGATGATACT+AGG | + | chr1_4:30246283-30246302 | Msa0159610:CDS | 40.0% | |
| ! | ATTGGATCTCTCTCTTTTGG+AGG | - | chr1_4:30246396-30246415 | None:intergenic | 40.0% |
| ! | CTCATTGGATCTCTCTCTTT+TGG | - | chr1_4:30246399-30246418 | None:intergenic | 40.0% |
| ATCTCCGTCCATATTCTCAT+TGG | - | chr1_4:30246414-30246433 | None:intergenic | 40.0% | |
| TCAACTTCAACTGTTCATGG+TGG | + | chr1_4:30246453-30246472 | Msa0159610:CDS | 40.0% | |
| ! | CATCGAATGAGTGGAAGTAT+AGG | + | chr1_4:30246720-30246739 | Msa0159610:CDS | 40.0% |
| GAAGTATAGGCGTTAACAAG+AGG | + | chr1_4:30246733-30246752 | Msa0159610:CDS | 40.0% | |
| TCGCATCTTTCACATGTTCT+AGG | - | chr1_4:30246761-30246780 | None:intergenic | 40.0% | |
| TTTACCCTCCAAAATCCATG+AGG | - | chr1_4:30246847-30246866 | None:intergenic | 40.0% | |
| !! | TCATGGATTTTGGAGGGTAA+AGG | + | chr1_4:30246846-30246865 | Msa0159610:CDS | 40.0% |
| GCTGCATTAGTTCATCACAA+CGG | - | chr1_4:30247156-30247175 | None:intergenic | 40.0% | |
| GTTGTGATGAACTAATGCAG+CGG | + | chr1_4:30247155-30247174 | Msa0159610:intron | 40.0% | |
| ATTGTGTGATTACACGACTG+CGG | + | chr1_4:30247501-30247520 | Msa0159610:intron | 40.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | + | chr1_4:30247699-30247718 | Msa0159610:CDS | 40.0% | |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | + | chr1_4:30247744-30247763 | Msa0159610:CDS | 40.0% |
| CAAGGTCGATCATGTAATCA+AGG | - | chr1_4:30247789-30247808 | None:intergenic | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | - | chr1_4:30247887-30247906 | None:intergenic | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | + | chr1_4:30247886-30247905 | Msa0159610:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | - | chr1_4:30247899-30247918 | None:intergenic | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | - | chr1_4:30248144-30248163 | None:intergenic | 40.0% | |
| !! | TCAGAAAAGTGTTCGAGAAG+TGG | - | chr1_4:30248166-30248185 | None:intergenic | 40.0% |
| ! | AACTCCTCCCTTCATCTTTT+AGG | + | chr1_4:30248220-30248239 | Msa0159610:intron | 40.0% |
| TGAACCTAAAAGATGAAGGG+AGG | - | chr1_4:30248227-30248246 | None:intergenic | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | + | chr1_4:30248344-30248363 | Msa0159610:CDS | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | + | chr1_4:30248346-30248365 | Msa0159610:CDS | 40.0% | |
| ! | TGTCATTTAGATTTGCCCCT+GGG | - | chr1_4:30248364-30248383 | None:intergenic | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | - | chr1_4:30248365-30248384 | None:intergenic | 40.0% |
| CCTCTAATAAATCATCAGCC+TGG | - | chr1_4:30248394-30248413 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | + | chr1_4:30248391-30248410 | Msa0159610:CDS | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | + | chr1_4:30248515-30248534 | Msa0159610:intron | 40.0% | |
| AGAAGAAGCTCGTGATATGA+TGG | + | chr1_4:30248715-30248734 | Msa0159610:CDS | 40.0% | |
| GAAGAAGCTCGTGATATGAT+GGG | + | chr1_4:30248716-30248735 | Msa0159610:CDS | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | + | chr1_4:30248942-30248961 | Msa0159610:intron | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | + | chr1_4:30248979-30248998 | Msa0159610:CDS | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | + | chr1_4:30248980-30248999 | Msa0159610:CDS | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | - | chr1_4:30248992-30249011 | None:intergenic | 40.0% |
| ACTTGTCTGTCATGATATCC+AGG | + | chr1_4:30249193-30249212 | Msa0159610:intron | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | + | chr1_4:30249259-30249278 | Msa0159610:CDS | 40.0% | |
| CAATTACTGGAACAGTATCG+AGG | + | chr1_4:30249580-30249599 | Msa0159610:intron | 40.0% | |
| AAGAACCAAAAACTGAGAGC+TGG | + | chr1_4:30249857-30249876 | Msa0159610:intron | 40.0% | |
| TCTCATGACTTTATCAGCAG+AGG | - | chr1_4:30249886-30249905 | None:intergenic | 40.0% | |
| GTTTCAAGGGAAACTTTGGT+TGG | + | chr1_4:30250130-30250149 | Msa0159610:intron | 40.0% | |
| ACTGTAGCACTGTAAAGTAG+TGG | + | chr1_4:30250279-30250298 | Msa0159610:intron | 40.0% | |
| ATCCCGATGTACTTTACATG+TGG | + | chr1_4:30250423-30250442 | Msa0159610:intron | 40.0% | |
| TCCCGATGTACTTTACATGT+GGG | + | chr1_4:30250424-30250443 | Msa0159610:intron | 40.0% | |
| ACCCACATGTAAAGTACATC+GGG | - | chr1_4:30250428-30250447 | None:intergenic | 40.0% | |
| GACCCACATGTAAAGTACAT+CGG | - | chr1_4:30250429-30250448 | None:intergenic | 40.0% | |
| ! | TCCTTCCTTTTCCTCTTGTT+AGG | + | chr1_4:30250654-30250673 | Msa0159610:intron | 40.0% |
| TCCTAACAAGAGGAAAAGGA+AGG | - | chr1_4:30250658-30250677 | None:intergenic | 40.0% | |
| ! | TCCTTTTCCTCTTGTTAGGA+AGG | + | chr1_4:30250658-30250677 | Msa0159610:intron | 40.0% |
| TCCTTCCTAACAAGAGGAAA+AGG | - | chr1_4:30250662-30250681 | None:intergenic | 40.0% | |
| TAGACATCCTTCCTAACAAG+AGG | - | chr1_4:30250668-30250687 | None:intergenic | 40.0% | |
| !! | CGAAGAGCATCAATTCTGAT+GGG | - | chr1_4:30250726-30250745 | None:intergenic | 40.0% |
| !! | ACGAAGAGCATCAATTCTGA+TGG | - | chr1_4:30250727-30250746 | None:intergenic | 40.0% |
| GCATCCTCTATTGCTTCTAA+TGG | + | chr1_4:30250832-30250851 | Msa0159610:CDS | 40.0% | |
| GGGGATAAAGGGAAAAATCG+TGG | - | chr1_4:30244988-30245007 | None:intergenic | 45.0% | |
| AAGAGGGTTAATACCCACCT+GGG | + | chr1_4:30245330-30245349 | Msa0159610:CDS | 45.0% | |
| TTCATGCTTATCTCCCAGGT+GGG | - | chr1_4:30245346-30245365 | None:intergenic | 45.0% | |
| ! | CCGGATAAAAGCAGTGGATT+TGG | + | chr1_4:30246162-30246181 | Msa0159610:CDS | 45.0% |
| GGAATTGTTGTCGGAAAAGC+AGG | + | chr1_4:30246206-30246225 | Msa0159610:CDS | 45.0% | |
| CAGGAAAGAGAACAACTTGG+TGG | + | chr1_4:30246225-30246244 | Msa0159610:CDS | 45.0% | |
| ! | GAAAGAGAACAACTTGGTGG+TGG | + | chr1_4:30246228-30246247 | Msa0159610:CDS | 45.0% |
| TGATACTAGGTCCGTGAATG+TGG | + | chr1_4:30246296-30246315 | Msa0159610:CDS | 45.0% | |
| GATACTAGGTCCGTGAATGT+GGG | + | chr1_4:30246297-30246316 | Msa0159610:CDS | 45.0% | |
| ! | ACTTGTTGGTCCCACATTCA+CGG | - | chr1_4:30246310-30246329 | None:intergenic | 45.0% |
| AACTGTTCATGGTGGCATTC+CGG | + | chr1_4:30246461-30246480 | Msa0159610:CDS | 45.0% | |
| ACAAAGATTGCAGCTCCAAG+TGG | + | chr1_4:30246570-30246589 | Msa0159610:CDS | 45.0% | |
| TGACAAAGAACGAGTCCTCA+TGG | + | chr1_4:30246829-30246848 | Msa0159610:CDS | 45.0% | |
| ! | GAACGAGTCCTCATGGATTT+TGG | + | chr1_4:30246836-30246855 | Msa0159610:CDS | 45.0% |
| ! | GAGTCCTCATGGATTTTGGA+GGG | + | chr1_4:30246840-30246859 | Msa0159610:CDS | 45.0% |
| GCTTATTGAGCCTTTGCTGA+TGG | + | chr1_4:30247323-30247342 | Msa0159610:intron | 45.0% | |
| TGAGAAAGTAGCAGTGGAGT+TGG | + | chr1_4:30247705-30247724 | Msa0159610:CDS | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | + | chr1_4:30247724-30247743 | Msa0159610:CDS | 45.0% | |
| TGAGAAGGACCAGGATGATA+AGG | + | chr1_4:30247810-30247829 | Msa0159610:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | + | chr1_4:30247881-30247900 | Msa0159610:intron | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | - | chr1_4:30247894-30247913 | None:intergenic | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | + | chr1_4:30248123-30248142 | Msa0159610:CDS | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | - | chr1_4:30248215-30248234 | None:intergenic | 45.0% | |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | + | chr1_4:30248314-30248333 | Msa0159610:CDS | 45.0% |
| ! | AGTTTTCGATCTGGCACAAC+AGG | - | chr1_4:30248671-30248690 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | - | chr1_4:30248680-30248699 | None:intergenic | 45.0% |
| ! | AAGCTCGTGATATGATGGGA+GGG | + | chr1_4:30248720-30248739 | Msa0159610:CDS | 45.0% |
| TTGGACGAAAGAAATGACCG+TGG | + | chr1_4:30248749-30248768 | Msa0159610:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | - | chr1_4:30248791-30248810 | None:intergenic | 45.0% | |
| AAAACCTGGGAAAGTTGTGC+TGG | + | chr1_4:30248993-30249012 | Msa0159610:CDS | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | - | chr1_4:30249000-30249019 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | + | chr1_4:30249030-30249049 | Msa0159610:CDS | 45.0% | |
| ! | TGGCAACGATGATGATGACA+GGG | + | chr1_4:30249065-30249084 | Msa0159610:CDS | 45.0% |
| GATGATGACAGGGTTTCAGT+AGG | + | chr1_4:30249075-30249094 | Msa0159610:CDS | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+CGG | + | chr1_4:30249084-30249103 | Msa0159610:CDS | 45.0% | |
| TTTCAGTAGGATTTGCCGGA+AGG | + | chr1_4:30249088-30249107 | Msa0159610:CDS | 45.0% | |
| TTCAGTAGGATTTGCCGGAA+GGG | + | chr1_4:30249089-30249108 | Msa0159610:CDS | 45.0% | |
| TCCAATTCAACTCACCCTTC+CGG | - | chr1_4:30249106-30249125 | None:intergenic | 45.0% | |
| ! | GTGAGTTGAATTGGATGACG+TGG | + | chr1_4:30249111-30249130 | Msa0159610:intron | 45.0% |
| ACTGTTTCGAGAAACATGCC+CGG | - | chr1_4:30249254-30249273 | None:intergenic | 45.0% | |
| CCATCATCTCCCAATGACAT+GGG | - | chr1_4:30249812-30249831 | None:intergenic | 45.0% | |
| TCCATCATCTCCCAATGACA+TGG | - | chr1_4:30249813-30249832 | None:intergenic | 45.0% | |
| ! | GGATACCAGCTCTCAGTTTT+TGG | - | chr1_4:30249865-30249884 | None:intergenic | 45.0% |
| CATGCAGTGTTGCCAAATAG+CGG | + | chr1_4:30250155-30250174 | Msa0159610:intron | 45.0% | |
| ATGCAGTGTTGCCAAATAGC+GGG | + | chr1_4:30250156-30250175 | Msa0159610:intron | 45.0% | |
| GCTGCATTATAGCGCTATAC+CGG | - | chr1_4:30250189-30250208 | None:intergenic | 45.0% | |
| AACCACTATTTCCCCTGATC+CGG | + | chr1_4:30250312-30250331 | Msa0159610:intron | 45.0% | |
| GTACTTTACATGTGGGTCTG+TGG | + | chr1_4:30250431-30250450 | Msa0159610:intron | 45.0% | |
| CTGCCTGTTGCTCTTTATGA+CGG | + | chr1_4:30250528-30250547 | Msa0159610:intron | 45.0% | |
| AGAAGCAATAGAGGATGCAG+TGG | - | chr1_4:30250830-30250849 | None:intergenic | 45.0% | |
| GACCGTCCAATCTGCTTCAA+AGG | + | chr1_4:30245211-30245230 | Msa0159610:CDS | 50.0% | |
| GAAGAGGGTTAATACCCACC+TGG | + | chr1_4:30245329-30245348 | Msa0159610:CDS | 50.0% | |
| GTTCATGCTTATCTCCCAGG+TGG | - | chr1_4:30245347-30245366 | None:intergenic | 50.0% | |
| CTTGAATCTGTGGTTGCTGC+AGG | + | chr1_4:30245396-30245415 | Msa0159610:CDS | 50.0% | |
| ACATCCACGTCCACTGACAA+AGG | - | chr1_4:30246045-30246064 | None:intergenic | 50.0% | |
| ! | CAAGATGGAAGGAGCACATC+AGG | + | chr1_4:30246078-30246097 | Msa0159610:CDS | 50.0% |
| ! | ATCAGGTAGTCCCAGGGTTT+TGG | + | chr1_4:30246095-30246114 | Msa0159610:CDS | 50.0% |
| TGGACGGAGATGAAGCGAAA+TGG | + | chr1_4:30246423-30246442 | Msa0159610:CDS | 50.0% | |
| ! | CTTTTCCTCCCGCGTTTCTT+CGG | - | chr1_4:30246489-30246508 | None:intergenic | 50.0% |
| CAAGCAGCACATCGAATGAG+TGG | + | chr1_4:30246711-30246730 | Msa0159610:CDS | 50.0% | |
| ! | CGAGTCCTCATGGATTTTGG+AGG | + | chr1_4:30246839-30246858 | Msa0159610:CDS | 50.0% |
| CATGATCGACCTTGCTGAGA+AGG | + | chr1_4:30247795-30247814 | Msa0159610:CDS | 50.0% | |
| AAAAATGCCCACCCCAGGTA+AGG | + | chr1_4:30248128-30248147 | Msa0159610:intron | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | - | chr1_4:30248138-30248157 | None:intergenic | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | - | chr1_4:30248139-30248158 | None:intergenic | 50.0% | |
| ! | GAAGCTCGTGATATGATGGG+AGG | + | chr1_4:30248719-30248738 | Msa0159610:CDS | 50.0% |
| ! | AGCTCGTGATATGATGGGAG+GGG | + | chr1_4:30248721-30248740 | Msa0159610:CDS | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | + | chr1_4:30248730-30248749 | Msa0159610:CDS | 50.0% |
| ATATACTCTACCTCCGGCTG+AGG | + | chr1_4:30248775-30248794 | Msa0159610:CDS | 50.0% | |
| ! | GATGAAGGTGCAGACAACAC+TGG | + | chr1_4:30249045-30249064 | Msa0159610:CDS | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | + | chr1_4:30249064-30249083 | Msa0159610:CDS | 50.0% |
| GATATCCAGGCAAGTGTGAC+AGG | + | chr1_4:30249206-30249225 | Msa0159610:intron | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | - | chr1_4:30249253-30249272 | None:intergenic | 50.0% | |
| AAGAAGACCGCCCATGTCAT+TGG | + | chr1_4:30249799-30249818 | Msa0159610:intron | 50.0% | |
| AGAAGACCGCCCATGTCATT+GGG | + | chr1_4:30249800-30249819 | Msa0159610:intron | 50.0% | |
| TCATCTCCCAATGACATGGG+CGG | - | chr1_4:30249809-30249828 | None:intergenic | 50.0% | |
| CCCATGTCATTGGGAGATGA+TGG | + | chr1_4:30249809-30249828 | Msa0159610:intron | 50.0% | |
| ACCACTATTTCCCCTGATCC+GGG | + | chr1_4:30250313-30250332 | Msa0159610:intron | 50.0% | |
| TGTTGTCAATCCCGGATCAG+GGG | - | chr1_4:30250326-30250345 | None:intergenic | 50.0% | |
| GTGTTGTCAATCCCGGATCA+GGG | - | chr1_4:30250327-30250346 | None:intergenic | 50.0% | |
| AGTGTTGTCAATCCCGGATC+AGG | - | chr1_4:30250328-30250347 | None:intergenic | 50.0% | |
| GATCCGGGATTGACAACACT+AGG | + | chr1_4:30250328-30250347 | Msa0159610:intron | 50.0% | |
| GAGCCTAGTGTTGTCAATCC+CGG | - | chr1_4:30250334-30250353 | None:intergenic | 50.0% | |
| TTGTGTCTCTGATGTCACGG+AGG | + | chr1_4:30250789-30250808 | Msa0159610:intron | 50.0% | |
| AGCAATAGAGGATGCAGTGG+TGG | - | chr1_4:30250827-30250846 | None:intergenic | 50.0% | |
| GGGGTTCATGCTTATCTCCC+AGG | - | chr1_4:30245350-30245369 | None:intergenic | 55.0% | |
| ! | CACCAAGGTGCCTTTGTCAG+TGG | + | chr1_4:30246032-30246051 | Msa0159610:CDS | 55.0% |
| !! | GTCCACTGACAAAGGCACCT+TGG | - | chr1_4:30246037-30246056 | None:intergenic | 55.0% |
| GAGCACATCAGGTAGTCCCA+GGG | + | chr1_4:30246089-30246108 | Msa0159610:CDS | 55.0% | |
| ! | GGTGGTGATGTGAACACGAG+AGG | + | chr1_4:30246246-30246265 | Msa0159610:CDS | 55.0% |
| ! | ATTCCGGTGCCGAAGAAACG+CGG | + | chr1_4:30246477-30246496 | Msa0159610:CDS | 55.0% |
| CATCCTGGTCCTTCTCAGCA+AGG | - | chr1_4:30247807-30247826 | None:intergenic | 55.0% | |
| GCAACACGCACACACATGCT+GGG | + | chr1_4:30248025-30248044 | Msa0159610:intron | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | + | chr1_4:30248069-30248088 | Msa0159610:intron | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | + | chr1_4:30248296-30248315 | Msa0159610:CDS | 55.0% | |
| ! | GCTCGTGATATGATGGGAGG+GGG | + | chr1_4:30248722-30248741 | Msa0159610:CDS | 55.0% |
| ! | CTCGTGATATGATGGGAGGG+GGG | + | chr1_4:30248723-30248742 | Msa0159610:CDS | 55.0% |
| CATCAACATACCTCAGCCGG+AGG | - | chr1_4:30248788-30248807 | None:intergenic | 55.0% | |
| ! | GCCGGAAGGGTGAGTTGAAT+TGG | + | chr1_4:30249102-30249121 | Msa0159610:intron | 55.0% |
| TCCAGGCAAGTGTGACAGGA+CGG | + | chr1_4:30249210-30249229 | Msa0159610:intron | 55.0% | |
| !! | CCAAATAGCGGGTGTAGCAC+CGG | + | chr1_4:30250167-30250186 | Msa0159610:intron | 55.0% |
| TCCCGGATCAGGGGAAATAG+TGG | - | chr1_4:30250317-30250336 | None:intergenic | 55.0% | |
| TCTCTGATGTCACGGAGGTC+TGG | + | chr1_4:30250794-30250813 | Msa0159610:intron | 55.0% | |
| GGTGCCTTTGTCAGTGGACG+TGG | + | chr1_4:30246038-30246057 | Msa0159610:CDS | 60.0% | |
| GGAGCACATCAGGTAGTCCC+AGG | + | chr1_4:30246088-30246107 | Msa0159610:CDS | 60.0% | |
| ! | TTCCGGTGCCGAAGAAACGC+GGG | + | chr1_4:30246478-30246497 | Msa0159610:CDS | 60.0% |
| GCAGTGGAGTTGGCTGCACA+AGG | + | chr1_4:30247715-30247734 | Msa0159610:CDS | 60.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | + | chr1_4:30247801-30247820 | Msa0159610:CDS | 60.0% | |
| CGCAACACGCACACACATGC+TGG | + | chr1_4:30248024-30248043 | Msa0159610:intron | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | + | chr1_4:30248299-30248318 | Msa0159610:CDS | 60.0% | |
| AACCGCCACCAGCTGCAACT+CGG | - | chr1_4:30248307-30248326 | None:intergenic | 60.0% | |
| TCCGTCCTGTCACACTTGCC+TGG | - | chr1_4:30249214-30249233 | None:intergenic | 60.0% | |
| GAAGCCACATCCTGTACGCC+CGG | + | chr1_4:30249232-30249251 | Msa0159610:CDS | 60.0% | |
| AAGCCACATCCTGTACGCCC+GGG | + | chr1_4:30249233-30249252 | Msa0159610:CDS | 60.0% | |
| AGAAACATGCCCGGGCGTAC+AGG | - | chr1_4:30249245-30249264 | None:intergenic | 60.0% | |
| !! | CCGGTGCTACACCCGCTATT+TGG | - | chr1_4:30250170-30250189 | None:intergenic | 60.0% |
| CTCCCGCGTTTCTTCGGCAC+CGG | - | chr1_4:30246483-30246502 | None:intergenic | 65.0% | |
| ATGCCCGGGCGTACAGGATG+TGG | - | chr1_4:30249239-30249258 | None:intergenic | 65.0% | |
| ! | CGGTGCCGAAGAAACGCGGG+AGG | + | chr1_4:30246481-30246500 | Msa0159610:CDS | 70.0% |
| CGCCGAGTTGCAGCTGGTGG+CGG | + | chr1_4:30248302-30248321 | Msa0159610:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 30244928 | 30250936 | 30244928 | ID=Msa0159610;Name=Msa0159610 |
| chr1_4 | mRNA | 30244928 | 30250936 | 30244928 | ID=Msa0159610-mRNA-1;Parent=Msa0159610;Name=Msa0159610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=245|0.77|0.7|0.9|1|1|10|0|686 |
| chr1_4 | exon | 30244928 | 30245232 | 30244928 | ID=Msa0159610-mRNA-1:exon:9727;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30245318 | 30245417 | 30245318 | ID=Msa0159610-mRNA-1:exon:9728;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30245968 | 30246989 | 30245968 | ID=Msa0159610-mRNA-1:exon:9729;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30247676 | 30247831 | 30247676 | ID=Msa0159610-mRNA-1:exon:9730;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30248076 | 30248144 | 30248076 | ID=Msa0159610-mRNA-1:exon:9731;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30248242 | 30248412 | 30248242 | ID=Msa0159610-mRNA-1:exon:9732;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30248653 | 30248796 | 30248653 | ID=Msa0159610-mRNA-1:exon:9733;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30248964 | 30249110 | 30248964 | ID=Msa0159610-mRNA-1:exon:9734;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30249215 | 30249280 | 30249215 | ID=Msa0159610-mRNA-1:exon:9735;Parent=Msa0159610-mRNA-1 |
| chr1_4 | exon | 30250811 | 30250936 | 30250811 | ID=Msa0159610-mRNA-1:exon:9736;Parent=Msa0159610-mRNA-1 |
| chr1_4 | five_prime_UTR | 30244928 | 30245172 | 30244928 | ID=Msa0159610-mRNA-1:five_prime_utr;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30245173 | 30245232 | 30245173 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30245318 | 30245417 | 30245318 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30245968 | 30246989 | 30245968 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30247676 | 30247831 | 30247676 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30248076 | 30248144 | 30248076 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30248242 | 30248412 | 30248242 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30248653 | 30248796 | 30248653 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30248964 | 30249110 | 30248964 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30249215 | 30249280 | 30249215 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| chr1_4 | CDS | 30250811 | 30250936 | 30250811 | ID=Msa0159610-mRNA-1:cds;Parent=Msa0159610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
