Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009120 | sp|Q8GUM3|AAP5_ARATH | 39.254 | 456 | 218 | 10 | 12 | 408 | 21 | 476 | 2.41e-107 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009120 | Msa0058580 | 0.838152 | 3.407131e-57 | -8.615850e-47 |
| Msa0009120 | Msa0149810 | 0.877445 | 6.250041e-69 | -8.615850e-47 |
| Msa0009120 | Msa0522120 | 0.814376 | 1.590052e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009120 | MtrunA17_Chr1g0146331 | 91.489 | 282 | 24 | 0 | 131 | 412 | 185 | 466 | 0.0 | 537 |
| Msa0009120 | MtrunA17_Chr1g0146331 | 94.000 | 100 | 4 | 1 | 1 | 98 | 1 | 100 | 1.94e-55 | 189 |
| Msa0009120 | MtrunA17_Chr1g0146391 | 85.985 | 264 | 37 | 0 | 149 | 412 | 194 | 457 | 2.97e-164 | 469 |
| Msa0009120 | MtrunA17_Chr1g0146391 | 89.888 | 89 | 9 | 0 | 10 | 98 | 4 | 92 | 8.98e-49 | 172 |
| Msa0009120 | MtrunA17_Chr2g0293331 | 76.703 | 279 | 64 | 1 | 135 | 412 | 179 | 457 | 1.60e-157 | 452 |
| Msa0009120 | MtrunA17_Chr2g0293331 | 80.000 | 90 | 18 | 0 | 9 | 98 | 3 | 92 | 3.42e-44 | 159 |
| Msa0009120 | MtrunA17_Chr3g0140531 | 66.288 | 264 | 87 | 1 | 151 | 412 | 208 | 471 | 2.00e-132 | 389 |
| Msa0009120 | MtrunA17_Chr3g0140531 | 71.429 | 98 | 28 | 0 | 1 | 98 | 7 | 104 | 4.49e-40 | 149 |
| Msa0009120 | MtrunA17_Chr3g0140541 | 43.929 | 453 | 199 | 6 | 12 | 411 | 19 | 469 | 2.03e-122 | 363 |
| Msa0009120 | MtrunA17_Chr8g0384661 | 40.529 | 454 | 214 | 10 | 8 | 408 | 40 | 490 | 9.76e-113 | 339 |
| Msa0009120 | MtrunA17_Chr1g0159761 | 40.133 | 451 | 216 | 7 | 12 | 408 | 21 | 471 | 4.51e-106 | 321 |
| Msa0009120 | MtrunA17_Chr1g0206871 | 40.618 | 453 | 207 | 11 | 18 | 408 | 15 | 467 | 2.03e-105 | 319 |
| Msa0009120 | MtrunA17_Chr4g0037201 | 38.596 | 456 | 221 | 9 | 12 | 408 | 53 | 508 | 2.90e-104 | 318 |
| Msa0009120 | MtrunA17_Chr1g0146411 | 54.874 | 277 | 116 | 4 | 137 | 411 | 203 | 472 | 4.83e-98 | 300 |
| Msa0009120 | MtrunA17_Chr1g0146411 | 64.368 | 87 | 30 | 1 | 12 | 98 | 27 | 112 | 9.72e-32 | 125 |
| Msa0009120 | MtrunA17_Chr3g0130651 | 40.312 | 449 | 212 | 7 | 12 | 408 | 20 | 464 | 5.64e-95 | 292 |
| Msa0009120 | MtrunA17_Chr3g0103231 | 35.281 | 445 | 234 | 8 | 12 | 403 | 17 | 460 | 4.72e-90 | 280 |
| Msa0009120 | MtrunA17_Chr1g0146491 | 46.909 | 275 | 143 | 2 | 141 | 412 | 198 | 472 | 6.93e-87 | 272 |
| Msa0009120 | MtrunA17_Chr1g0146491 | 59.770 | 87 | 35 | 0 | 12 | 98 | 17 | 103 | 2.63e-28 | 115 |
| Msa0009120 | MtrunA17_Chr3g0140761 | 43.310 | 284 | 156 | 3 | 134 | 412 | 199 | 482 | 5.32e-85 | 267 |
| Msa0009120 | MtrunA17_Chr3g0140761 | 60.920 | 87 | 34 | 0 | 12 | 98 | 27 | 113 | 1.23e-27 | 114 |
| Msa0009120 | MtrunA17_Chr3g0103271 | 35.828 | 441 | 227 | 9 | 12 | 398 | 21 | 459 | 1.28e-84 | 266 |
| Msa0009120 | MtrunA17_Chr3g0103211 | 33.710 | 442 | 236 | 10 | 12 | 397 | 17 | 457 | 4.01e-78 | 249 |
| Msa0009120 | MtrunA17_Chr3g0125081 | 45.736 | 258 | 136 | 3 | 155 | 408 | 218 | 475 | 3.28e-77 | 247 |
| Msa0009120 | MtrunA17_Chr3g0125081 | 60.920 | 87 | 34 | 0 | 12 | 98 | 28 | 114 | 7.31e-28 | 114 |
| Msa0009120 | MtrunA17_Chr1g0206851 | 43.060 | 281 | 151 | 3 | 131 | 408 | 103 | 377 | 2.30e-76 | 242 |
| Msa0009120 | MtrunA17_Chr3g0125101 | 45.174 | 259 | 137 | 4 | 155 | 408 | 218 | 476 | 2.09e-74 | 239 |
| Msa0009120 | MtrunA17_Chr3g0125101 | 62.069 | 87 | 33 | 0 | 12 | 98 | 28 | 114 | 2.67e-28 | 116 |
| Msa0009120 | MtrunA17_Chr1g0206831 | 39.423 | 312 | 168 | 4 | 87 | 395 | 34 | 327 | 5.58e-74 | 234 |
| Msa0009120 | MtrunA17_Chr3g0125091 | 43.617 | 282 | 151 | 5 | 135 | 408 | 195 | 476 | 1.50e-73 | 238 |
| Msa0009120 | MtrunA17_Chr3g0125091 | 59.770 | 87 | 35 | 0 | 12 | 98 | 28 | 114 | 8.12e-28 | 114 |
| Msa0009120 | MtrunA17_Chr3g0130641 | 41.606 | 274 | 150 | 5 | 139 | 409 | 208 | 474 | 9.51e-69 | 225 |
| Msa0009120 | MtrunA17_Chr3g0130641 | 56.322 | 87 | 38 | 0 | 12 | 98 | 27 | 113 | 4.52e-28 | 115 |
| Msa0009120 | MtrunA17_Chr1g0206821 | 47.248 | 218 | 112 | 2 | 194 | 408 | 310 | 527 | 2.25e-67 | 223 |
| Msa0009120 | MtrunA17_Chr1g0206821 | 51.961 | 102 | 45 | 1 | 1 | 98 | 1 | 102 | 3.35e-27 | 113 |
| Msa0009120 | MtrunA17_Chr3g0103251 | 38.934 | 244 | 143 | 3 | 158 | 398 | 127 | 367 | 4.37e-63 | 207 |
| Msa0009120 | MtrunA17_Chr5g0447221 | 39.759 | 249 | 145 | 4 | 159 | 402 | 217 | 465 | 2.32e-62 | 208 |
| Msa0009120 | MtrunA17_Chr5g0447221 | 53.000 | 100 | 41 | 2 | 2 | 100 | 18 | 112 | 1.02e-22 | 99.8 |
| Msa0009120 | MtrunA17_Chr3g0103221 | 35.688 | 269 | 166 | 4 | 133 | 398 | 197 | 461 | 4.59e-57 | 194 |
| Msa0009120 | MtrunA17_Chr3g0103221 | 56.790 | 81 | 35 | 0 | 15 | 95 | 27 | 107 | 3.32e-23 | 101 |
| Msa0009120 | MtrunA17_Chr5g0447231 | 36.481 | 233 | 145 | 2 | 169 | 398 | 225 | 457 | 4.59e-53 | 183 |
| Msa0009120 | MtrunA17_Chr5g0447231 | 43.158 | 95 | 53 | 1 | 2 | 95 | 9 | 103 | 7.67e-18 | 85.1 |
| Msa0009120 | MtrunA17_Chr3g0130661 | 43.646 | 181 | 96 | 3 | 232 | 409 | 1 | 178 | 5.46e-49 | 164 |
| Msa0009120 | MtrunA17_Chr5g0402151 | 34.266 | 286 | 121 | 10 | 21 | 263 | 3 | 264 | 6.69e-39 | 140 |
| Msa0009120 | MtrunA17_Chr1g0206841 | 57.778 | 90 | 38 | 0 | 9 | 98 | 12 | 101 | 1.52e-30 | 113 |
| Msa0009120 | MtrunA17_Chr3g0130671 | 56.322 | 87 | 38 | 0 | 12 | 98 | 33 | 119 | 2.46e-29 | 115 |
| Msa0009120 | MtrunA17_Chr3g0103261 | 58.333 | 84 | 35 | 0 | 12 | 95 | 17 | 100 | 5.29e-29 | 111 |
| Msa0009120 | MtrunA17_Chr1g0206861 | 57.303 | 89 | 38 | 0 | 10 | 98 | 13 | 101 | 1.04e-27 | 107 |
| Msa0009120 | MtrunA17_Chr4g0057851 | 24.537 | 432 | 248 | 12 | 9 | 392 | 1 | 402 | 7.40e-27 | 111 |
| Msa0009120 | MtrunA17_Chr6g0458931 | 22.749 | 422 | 256 | 10 | 17 | 394 | 41 | 436 | 1.09e-25 | 108 |
| Msa0009120 | MtrunA17_Chr1g0146351 | 61.972 | 71 | 26 | 1 | 28 | 98 | 13 | 82 | 4.16e-24 | 96.3 |
| Msa0009120 | MtrunA17_Chr2g0331721 | 23.961 | 409 | 230 | 13 | 17 | 373 | 46 | 425 | 4.27e-22 | 97.8 |
| Msa0009120 | MtrunA17_Chr1g0184721 | 23.756 | 442 | 274 | 11 | 11 | 408 | 15 | 437 | 1.41e-19 | 90.5 |
| Msa0009120 | MtrunA17_Chr7g0230011 | 24.679 | 312 | 185 | 8 | 16 | 283 | 28 | 333 | 5.33e-19 | 88.6 |
| Msa0009120 | MtrunA17_Chr6g0458921 | 22.857 | 455 | 269 | 12 | 9 | 410 | 1 | 426 | 9.20e-19 | 87.8 |
| Msa0009120 | MtrunA17_Chr6g0459031 | 22.252 | 373 | 214 | 10 | 10 | 331 | 3 | 350 | 4.43e-18 | 85.9 |
| Msa0009120 | MtrunA17_Chr6g0459011 | 24.198 | 405 | 233 | 12 | 34 | 392 | 1 | 377 | 7.19e-18 | 84.7 |
| Msa0009120 | MtrunA17_Chr8g0376991 | 24.153 | 236 | 153 | 5 | 180 | 409 | 221 | 436 | 1.27e-17 | 84.3 |
| Msa0009120 | MtrunA17_Chr6g0459021 | 25.159 | 314 | 179 | 11 | 17 | 283 | 33 | 337 | 2.88e-17 | 83.6 |
| Msa0009120 | MtrunA17_Chr2g0328081 | 23.387 | 372 | 208 | 12 | 10 | 331 | 6 | 350 | 6.54e-17 | 82.0 |
| Msa0009120 | MtrunA17_Chr3g0122921 | 23.794 | 311 | 187 | 8 | 17 | 283 | 32 | 336 | 8.69e-17 | 82.0 |
| Msa0009120 | MtrunA17_Chr5g0422741 | 24.816 | 407 | 245 | 17 | 9 | 373 | 16 | 403 | 2.47e-16 | 80.5 |
| Msa0009120 | MtrunA17_Chr3g0077651 | 24.691 | 243 | 165 | 3 | 169 | 409 | 243 | 469 | 3.41e-15 | 77.0 |
| Msa0009120 | MtrunA17_Chr6g0459001 | 22.848 | 302 | 183 | 8 | 16 | 273 | 20 | 315 | 3.53e-13 | 70.9 |
| Msa0009120 | MtrunA17_Chr4g0027241 | 23.022 | 417 | 239 | 16 | 10 | 366 | 28 | 422 | 1.71e-12 | 68.9 |
| Msa0009120 | MtrunA17_Chr1g0198541 | 23.984 | 246 | 165 | 3 | 167 | 408 | 209 | 436 | 2.25e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009120 | AT1G44100.1 | 39.254 | 456 | 218 | 10 | 12 | 408 | 21 | 476 | 2.45e-108 | 328 |
| Msa0009120 | AT1G10010.1 | 50.192 | 261 | 127 | 2 | 151 | 408 | 211 | 471 | 3.55e-90 | 281 |
| Msa0009120 | AT1G10010.1 | 64.368 | 87 | 31 | 0 | 12 | 98 | 21 | 107 | 6.24e-31 | 124 |
| Msa0009120 | AT1G10010.2 | 50.192 | 261 | 127 | 2 | 151 | 408 | 212 | 472 | 4.02e-90 | 281 |
| Msa0009120 | AT1G10010.2 | 64.368 | 87 | 31 | 0 | 12 | 98 | 22 | 108 | 6.69e-31 | 124 |
| Msa0009120 | AT1G58360.1 | 49.808 | 261 | 128 | 2 | 151 | 408 | 220 | 480 | 1.28e-89 | 280 |
| Msa0009120 | AT1G58360.1 | 64.368 | 87 | 31 | 0 | 12 | 98 | 30 | 116 | 3.08e-31 | 125 |
| Msa0009120 | AT5G49630.1 | 46.350 | 274 | 141 | 4 | 139 | 408 | 207 | 478 | 1.59e-85 | 269 |
| Msa0009120 | AT5G49630.1 | 60.920 | 87 | 34 | 0 | 12 | 98 | 26 | 112 | 8.87e-30 | 120 |
| Msa0009120 | AT1G77380.1 | 49.213 | 254 | 125 | 3 | 158 | 408 | 220 | 472 | 2.86e-80 | 255 |
| Msa0009120 | AT1G77380.1 | 65.517 | 87 | 30 | 0 | 12 | 98 | 23 | 109 | 6.69e-31 | 124 |
| Msa0009120 | AT5G23810.1 | 37.825 | 423 | 207 | 9 | 11 | 377 | 18 | 440 | 2.97e-80 | 255 |
| Msa0009120 | AT5G63850.1 | 41.961 | 255 | 143 | 3 | 158 | 408 | 209 | 462 | 2.08e-73 | 237 |
| Msa0009120 | AT5G63850.1 | 58.621 | 87 | 36 | 0 | 12 | 98 | 12 | 98 | 3.88e-29 | 118 |
| Msa0009120 | AT5G09220.1 | 40.784 | 255 | 146 | 3 | 158 | 408 | 236 | 489 | 1.24e-71 | 233 |
| Msa0009120 | AT5G09220.1 | 59.770 | 87 | 35 | 0 | 12 | 98 | 39 | 125 | 1.91e-29 | 120 |
| Msa0009120 | AT5G23810.2 | 37.003 | 327 | 153 | 8 | 11 | 284 | 18 | 344 | 5.73e-53 | 181 |
| Msa0009120 | AT5G40780.1 | 25.537 | 419 | 248 | 11 | 17 | 394 | 32 | 427 | 3.65e-26 | 110 |
| Msa0009120 | AT5G23810.5 | 56.180 | 89 | 38 | 1 | 11 | 98 | 18 | 106 | 4.32e-25 | 102 |
| Msa0009120 | AT5G23810.3 | 56.180 | 89 | 38 | 1 | 11 | 98 | 18 | 106 | 4.32e-25 | 102 |
| Msa0009120 | AT1G48640.1 | 24.146 | 439 | 262 | 13 | 17 | 410 | 39 | 451 | 7.92e-25 | 106 |
| Msa0009120 | AT5G23810.4 | 56.180 | 89 | 38 | 1 | 11 | 98 | 18 | 106 | 1.01e-24 | 102 |
| Msa0009120 | AT5G40780.3 | 25.622 | 402 | 235 | 11 | 34 | 394 | 1 | 379 | 4.28e-23 | 100 |
| Msa0009120 | AT5G40780.2 | 25.622 | 402 | 235 | 11 | 34 | 394 | 1 | 379 | 4.28e-23 | 100 |
| Msa0009120 | AT1G24400.1 | 24.658 | 438 | 262 | 10 | 17 | 409 | 27 | 441 | 1.61e-21 | 96.7 |
| Msa0009120 | AT3G01760.1 | 22.529 | 435 | 268 | 11 | 17 | 404 | 30 | 442 | 7.90e-20 | 91.7 |
| Msa0009120 | AT1G67640.1 | 23.182 | 440 | 266 | 12 | 17 | 409 | 27 | 441 | 4.45e-17 | 83.2 |
| Msa0009120 | AT1G71680.1 | 24.099 | 444 | 258 | 11 | 17 | 409 | 33 | 448 | 3.06e-16 | 80.9 |
| Msa0009120 | AT1G08230.2 | 26.018 | 442 | 258 | 13 | 18 | 409 | 27 | 449 | 4.14e-16 | 80.5 |
| Msa0009120 | AT1G71680.2 | 26.415 | 318 | 171 | 9 | 17 | 283 | 33 | 338 | 7.25e-15 | 75.9 |
| Msa0009120 | AT1G61270.1 | 23.478 | 230 | 153 | 5 | 180 | 406 | 233 | 442 | 3.89e-14 | 74.3 |
| Msa0009120 | AT1G08230.4 | 28.731 | 268 | 150 | 10 | 164 | 409 | 82 | 330 | 2.02e-12 | 68.2 |
| Msa0009120 | AT1G08230.6 | 28.731 | 268 | 150 | 10 | 164 | 409 | 82 | 330 | 2.02e-12 | 68.2 |
| Msa0009120 | AT1G08230.5 | 28.731 | 268 | 150 | 10 | 164 | 409 | 82 | 330 | 2.02e-12 | 68.2 |
| Msa0009120 | AT1G08230.3 | 28.731 | 268 | 150 | 10 | 164 | 409 | 101 | 349 | 2.66e-12 | 68.2 |
Find 105 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCATATATTTATAAAA+AGG | 0.192880 | 1_1:-13310500 | Msa0009120:three_prime_UTR |
| TGAATTTGTTTAGGTTAATT+TGG | 0.199749 | 1_1:-13311048 | Msa0009120:CDS |
| GTCTACTTACAAAGGCATTT+TGG | 0.203827 | 1_1:-13312044 | Msa0009120:intron |
| CTGAGTAAGCCCGGTTTATT+TGG | 0.205079 | 1_1:+13314547 | None:intergenic |
| CTGTTGGGAGCGATTGGATT+TGG | 0.205722 | 1_1:-13310956 | Msa0009120:CDS |
| TTTATAAATATATGAGAATA+AGG | 0.230238 | 1_1:+13310504 | None:intergenic |
| TTATAGTTCTATTTGATAAT+AGG | 0.261910 | 1_1:-13312814 | Msa0009120:intron |
| TCTTTCTCTCCTATCTGTTT+TGG | 0.274215 | 1_1:-13314592 | Msa0009120:five_prime_UTR |
| TGCCTTGGCTATGCTGCTTT+TGG | 0.276773 | 1_1:-13311663 | Msa0009120:CDS |
| AGCATAACCGGAACACAAAT+AGG | 0.277840 | 1_1:-13311994 | Msa0009120:CDS |
| TTCTCTGCAGCAGTTAGTTC+TGG | 0.283344 | 1_1:+13311970 | None:intergenic |
| CAATCAATTTGAATTTGTTT+AGG | 0.288279 | 1_1:-13311057 | Msa0009120:CDS |
| TGAGCAATATGCATTTGTAT+AGG | 0.297844 | 1_1:+13310914 | None:intergenic |
| CCACATGATTGGAGCATATC+AGG | 0.303203 | 1_1:-13311559 | Msa0009120:intron |
| TTCTGGCCCTATTTGTGTTC+CGG | 0.312048 | 1_1:+13311987 | None:intergenic |
| ATGAAAAGGGCCAACGTGAT+AGG | 0.325683 | 1_1:-13311723 | Msa0009120:CDS |
| TGTTGGGAGCGATTGGATTT+GGG | 0.348025 | 1_1:-13310955 | Msa0009120:CDS |
| GAGCAATATGCATTTGTATA+GGG | 0.351412 | 1_1:+13310915 | None:intergenic |
| AAGGTACATACCAGTTCTTT+TGG | 0.354167 | 1_1:+13314437 | None:intergenic |
| TGAGTAAGCCCGGTTTATTT+GGG | 0.354469 | 1_1:+13314548 | None:intergenic |
| CAATCAGTTTCTAGCTCTGT+TGG | 0.357478 | 1_1:-13310972 | Msa0009120:CDS |
| CAGGGGTGTTGGCTCTAGCA+TGG | 0.361926 | 1_1:-13313430 | Msa0009120:CDS |
| TACTGTTATTTACGACATAA+TGG | 0.366442 | 1_1:-13311893 | Msa0009120:intron |
| TCTTTGTATGGTTGTCTCAT+TGG | 0.385439 | 1_1:-13310837 | Msa0009120:CDS |
| CCAAGGGCTACTATCCAATA+AGG | 0.391272 | 1_1:+13311600 | None:intergenic |
| TGTAGTAGGGGCAGGGGTGT+TGG | 0.391643 | 1_1:-13313441 | Msa0009120:CDS |
| AATAACTACCCCAAATAAAC+CGG | 0.392382 | 1_1:-13314557 | Msa0009120:five_prime_UTR |
| TGTCTTACTGTCCTTATCTC+AGG | 0.412282 | 1_1:-13312243 | Msa0009120:intron |
| GTCTTGTAGCTGATTGCTAT+AGG | 0.413676 | 1_1:-13313331 | Msa0009120:CDS |
| GGGGCATCTACCAGCATAAC+CGG | 0.419402 | 1_1:-13312006 | Msa0009120:CDS |
| AATCAGTTTCTAGCTCTGTT+GGG | 0.423765 | 1_1:-13310971 | Msa0009120:CDS |
| GATATTGATATTGATATAGA+TGG | 0.424955 | 1_1:+13314632 | None:intergenic |
| TGAAAAGGGCCAACGTGATA+GGG | 0.434153 | 1_1:-13311722 | Msa0009120:CDS |
| CAAGCTGTCAAGAGCTACTT+AGG | 0.436812 | 1_1:-13313266 | Msa0009120:intron |
| AGGGGTGTTGGCTCTAGCAT+GGG | 0.441108 | 1_1:-13313429 | Msa0009120:CDS |
| CAGAAAATAAACAAATGAAA+AGG | 0.441906 | 1_1:-13311737 | Msa0009120:CDS |
| CATATCATAACAGTTGTAGT+AGG | 0.450490 | 1_1:-13313455 | Msa0009120:CDS |
| CTAGCTCTGTTGGGAGCGAT+TGG | 0.450650 | 1_1:-13310962 | Msa0009120:CDS |
| TACCAGCTATCCATCCTAGT+TGG | 0.452399 | 1_1:+13313399 | None:intergenic |
| TGCATAGTAATCCACATGAT+TGG | 0.455742 | 1_1:-13311570 | Msa0009120:CDS |
| GTAGTATATATGTCGAGCTT+TGG | 0.457129 | 1_1:-13310547 | Msa0009120:three_prime_UTR |
| GCATAACCGGAACACAAATA+GGG | 0.463229 | 1_1:-13311993 | Msa0009120:CDS |
| TACAAAGACAATTCAAAAGT+TGG | 0.463664 | 1_1:+13310852 | None:intergenic |
| CTAGGATGGATAGCTGGTAT+AGG | 0.464604 | 1_1:-13313395 | Msa0009120:CDS |
| GTGGCGTGTTTGCACTTCAA+TGG | 0.465802 | 1_1:-13311944 | Msa0009120:CDS |
| GATGGTAAAGCCAAAAGAAC+TGG | 0.469877 | 1_1:-13314447 | Msa0009120:intron |
| TTCCTACTATGTAGTTGCCT+TGG | 0.474242 | 1_1:-13311678 | Msa0009120:CDS |
| CGGTCACTGCCAAAACAGAT+AGG | 0.478263 | 1_1:+13314583 | None:intergenic |
| GTTGGCTCTAGCATGGGCCA+TGG | 0.482757 | 1_1:-13313423 | Msa0009120:CDS |
| AGAAAATAAACAAATGAAAA+GGG | 0.483828 | 1_1:-13311736 | Msa0009120:CDS |
| TATTTGTGTTCCGGTTATGC+TGG | 0.485037 | 1_1:+13311996 | None:intergenic |
| TATTACACAAACTCTAATCA+TGG | 0.488415 | 1_1:-13314481 | Msa0009120:CDS |
| ACCAGCTATCCATCCTAGTT+GGG | 0.489518 | 1_1:+13313400 | None:intergenic |
| TTTGGCTAAGAGCAGGAAAA+GGG | 0.492627 | 1_1:-13312026 | Msa0009120:CDS |
| ATAACAGTTGTAGTAGGGGC+AGG | 0.494302 | 1_1:-13313449 | Msa0009120:CDS |
| TGGCGTGTTTGCACTTCAAT+GGG | 0.506484 | 1_1:-13311943 | Msa0009120:CDS |
| TGGCATTGCCATGGCAAGAA+TGG | 0.508311 | 1_1:+13311000 | None:intergenic |
| ATAGGGAAGAAGACAACTAA+TGG | 0.514205 | 1_1:+13310932 | None:intergenic |
| GGAACGATGCAAGTGATTTG+TGG | 0.514681 | 1_1:-13312790 | Msa0009120:CDS |
| ATATCATAACAGTTGTAGTA+GGG | 0.519670 | 1_1:-13313454 | Msa0009120:CDS |
| GACTATTCATTTAACGTGCG+TGG | 0.527695 | 1_1:-13311085 | Msa0009120:CDS |
| AGCCAAGGCAACTACATAGT+AGG | 0.529056 | 1_1:+13311676 | None:intergenic |
| CCTTATTGGATAGTAGCCCT+TGG | 0.533842 | 1_1:-13311600 | Msa0009120:CDS |
| AGATAACTAAATGATATAAG+TGG | 0.534402 | 1_1:-13314526 | Msa0009120:five_prime_UTR |
| TAGTTCTATTTGATAATAGG+TGG | 0.535827 | 1_1:-13312811 | Msa0009120:CDS |
| GCATGGGCCATGGCCCAACT+AGG | 0.536744 | 1_1:-13313413 | Msa0009120:CDS |
| GGGCCATGGCCCAACTAGGA+TGG | 0.542624 | 1_1:-13313409 | Msa0009120:CDS |
| AACAGTTGTAGTAGGGGCAG+GGG | 0.543889 | 1_1:-13313447 | Msa0009120:CDS |
| ATTTGTTTAGGTTAATTTGG+AGG | 0.545355 | 1_1:-13311045 | Msa0009120:CDS |
| TTTAGTTATCTGAGTAAGCC+CGG | 0.546181 | 1_1:+13314538 | None:intergenic |
| TATCCATCCTAGTTGGGCCA+TGG | 0.551644 | 1_1:+13313406 | None:intergenic |
| GCCCAACTAGGATGGATAGC+TGG | 0.559262 | 1_1:-13313401 | Msa0009120:CDS |
| AGGTTTCCAGACCCAATCAC+TGG | 0.561683 | 1_1:-13313311 | Msa0009120:CDS |
| TAACAGTTGTAGTAGGGGCA+GGG | 0.570383 | 1_1:-13313448 | Msa0009120:CDS |
| ACTGTAAGTGAAAATAGAGA+TGG | 0.570667 | 1_1:+13313352 | None:intergenic |
| TTCTTATAATAAGGACCGGA+GGG | 0.570866 | 1_1:-13310571 | Msa0009120:three_prime_UTR |
| CATTTCTTTAGAGATAGAGT+TGG | 0.570900 | 1_1:-13310453 | Msa0009120:three_prime_UTR |
| CACCAAAAGCAGCATAGCCA+AGG | 0.570972 | 1_1:+13311661 | None:intergenic |
| GACATATATACTACTCCCTC+CGG | 0.571546 | 1_1:+13310556 | None:intergenic |
| TCAACAAACTACCTGAGATA+AGG | 0.572267 | 1_1:+13312232 | None:intergenic |
| TTACTATGCATACTTCTCCA+AGG | 0.582950 | 1_1:+13311583 | None:intergenic |
| TACTATGCATACTTCTCCAA+GGG | 0.589792 | 1_1:+13311584 | None:intergenic |
| GAAAAGGGCCAACGTGATAG+GGG | 0.592889 | 1_1:-13311721 | Msa0009120:CDS |
| AATAGCAACCATTCTTGCCA+TGG | 0.596755 | 1_1:-13311008 | Msa0009120:CDS |
| AAGTTAGCTGGGATAACAGT+GGG | 0.598087 | 1_1:-13312751 | Msa0009120:CDS |
| CCTGATATGCTCCAATCATG+TGG | 0.605077 | 1_1:+13311559 | None:intergenic |
| TTGATATTGATATAGATGGA+TGG | 0.612712 | 1_1:+13314636 | None:intergenic |
| GCAATATTGCAGGGAATGTG+TGG | 0.613247 | 1_1:-13313490 | Msa0009120:intron |
| TACCCGTGTTATCATTGAGG+TGG | 0.616935 | 1_1:-13310883 | Msa0009120:CDS |
| ACACCACCTCAATGATAACA+CGG | 0.627382 | 1_1:+13310880 | None:intergenic |
| TAACTGCTGCAGAGAAAGTG+TGG | 0.629057 | 1_1:-13311963 | Msa0009120:CDS |
| GCATACCCGTGTTATCATTG+AGG | 0.631382 | 1_1:-13310886 | Msa0009120:CDS |
| ATCATGGAACAAGATGATGA+TGG | 0.632907 | 1_1:-13314465 | Msa0009120:CDS |
| TATCATAACAGTTGTAGTAG+GGG | 0.641841 | 1_1:-13313453 | Msa0009120:CDS |
| ATAACTACCCCAAATAAACC+GGG | 0.642827 | 1_1:-13314556 | Msa0009120:five_prime_UTR |
| GAGTAAGCCCGGTTTATTTG+GGG | 0.644215 | 1_1:+13314549 | None:intergenic |
| TTGGCTAAGAGCAGGAAAAG+GGG | 0.645369 | 1_1:-13312025 | Msa0009120:CDS |
| TTTCTTATAATAAGGACCGG+AGG | 0.646407 | 1_1:-13310572 | Msa0009120:three_prime_UTR |
| ACAATAGCATCTTTGTAACA+AGG | 0.649686 | 1_1:-13310747 | Msa0009120:exon |
| CACCACCTCAATGATAACAC+GGG | 0.666427 | 1_1:+13310881 | None:intergenic |
| AGATAAGGACAGTAAGACAA+AGG | 0.669370 | 1_1:+13312247 | None:intergenic |
| ATGAATTGAAGCAACTACAG+CGG | 0.673797 | 1_1:+13310814 | None:intergenic |
| AAAGTTAGCTGGGATAACAG+TGG | 0.691801 | 1_1:-13312752 | Msa0009120:CDS |
| AGTTGATACCCCTATCACGT+TGG | 0.708813 | 1_1:+13311713 | None:intergenic |
| AAATGGGTGCTAATATCGTG+TGG | 0.710937 | 1_1:-13311132 | Msa0009120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTATATTTCATAATTATA+TGG | - | chr1_1:13310779-13310798 | Msa0009120:CDS | 10.0% |
| !! | TATATTGGTAAAATATATTT+AGG | - | chr1_1:13313760-13313779 | Msa0009120:intron | 10.0% |
| !! | TTTATAAATATATGAGAATA+AGG | + | chr1_1:13314621-13314640 | None:intergenic | 10.0% |
| !! | ATTCTCATATATTTATAAAA+AGG | - | chr1_1:13314622-13314641 | Msa0009120:five_prime_UTR | 10.0% |
| !! | TTCTCATATATTTATAAAAA+GGG | - | chr1_1:13314623-13314642 | Msa0009120:five_prime_UTR | 10.0% |
| !! | TTAAAAAACAAAGAATTAGA+TGG | + | chr1_1:13311347-13311366 | None:intergenic | 15.0% |
| !!! | ATCTAATTCTTTGTTTTTTA+AGG | - | chr1_1:13311346-13311365 | Msa0009120:intron | 15.0% |
| !! | TTTCATTTATACTTATTTAG+AGG | + | chr1_1:13311585-13311604 | None:intergenic | 15.0% |
| !! | ATCATGTTATGATTAATATT+TGG | - | chr1_1:13311606-13311625 | Msa0009120:CDS | 15.0% |
| !!! | TTATAGTTCTATTTGATAAT+AGG | - | chr1_1:13312308-13312327 | Msa0009120:intron | 15.0% |
| !! | ATAATACAAAAAATGAATCA+TGG | - | chr1_1:13312517-13312536 | Msa0009120:intron | 15.0% |
| !!! | ATTTTTCCATAATTTTGTTT+AGG | - | chr1_1:13313341-13313360 | Msa0009120:CDS | 15.0% |
| !! | AGAAAATAAACAAATGAAAA+GGG | - | chr1_1:13313386-13313405 | Msa0009120:CDS | 15.0% |
| !! | ATAAAACTCAATAATTAAAC+TGG | + | chr1_1:13313606-13313625 | None:intergenic | 15.0% |
| !! | TATCATGGTAATATATAATT+TGG | + | chr1_1:13313700-13313719 | None:intergenic | 15.0% |
| !! | AAATTATATATTACCATGAT+AGG | - | chr1_1:13313699-13313718 | Msa0009120:intron | 15.0% |
| !!! | ATTTTTAGAAATATGACAAA+AGG | + | chr1_1:13313835-13313854 | None:intergenic | 15.0% |
| !!! | TTGATTTATGAATTTTGAAT+CGG | + | chr1_1:13314017-13314036 | None:intergenic | 15.0% |
| !! | GATATTGATATTGATATAGA+TGG | + | chr1_1:13310493-13310512 | None:intergenic | 20.0% |
| !! | AGATAACTAAATGATATAAG+TGG | - | chr1_1:13310596-13310615 | Msa0009120:three_prime_UTR | 20.0% |
| !! | AATTAAGATAGAAAGGAATA+AGG | + | chr1_1:13310707-13310726 | None:intergenic | 20.0% |
| !!! | GACAAAAATATTGATTGATT+TGG | - | chr1_1:13310948-13310967 | Msa0009120:CDS | 20.0% |
| !!! | ATAGTTGCTTTTAAAACTTT+CGG | + | chr1_1:13311304-13311323 | None:intergenic | 20.0% |
| !!! | TGTATCATATATTTAGAACA+GGG | + | chr1_1:13311929-13311948 | None:intergenic | 20.0% |
| !!! | ATGTATCATATATTTAGAAC+AGG | + | chr1_1:13311930-13311949 | None:intergenic | 20.0% |
| !! | TGTATTATTCAATAAGAAAG+AGG | - | chr1_1:13312076-13312095 | Msa0009120:intron | 20.0% |
| !! | TAAGAAATATTGTTAGTAGT+TGG | + | chr1_1:13312188-13312207 | None:intergenic | 20.0% |
| !! | AATATTCTGTTATAAAAGGA+GGG | + | chr1_1:13312232-13312251 | None:intergenic | 20.0% |
| !! | AAGGAATATTCTGTTATAAA+AGG | + | chr1_1:13312236-13312255 | None:intergenic | 20.0% |
| !!! | ATTCCTTAAAGTTTTAAACA+TGG | - | chr1_1:13312249-13312268 | Msa0009120:CDS | 20.0% |
| !!! | TTCCTTAAAGTTTTAAACAT+GGG | - | chr1_1:13312250-13312269 | Msa0009120:CDS | 20.0% |
| !! | TTATATATGTCTACTTACAA+AGG | - | chr1_1:13313070-13313089 | Msa0009120:intron | 20.0% |
| !! | TATGGAAAAATCAAATACAA+GGG | + | chr1_1:13313332-13313351 | None:intergenic | 20.0% |
| !! | TTATGGAAAAATCAAATACA+AGG | + | chr1_1:13313333-13313352 | None:intergenic | 20.0% |
| !! | ATGTATCCTAAACAAAATTA+TGG | + | chr1_1:13313350-13313369 | None:intergenic | 20.0% |
| !!! | CTTTTCATTTGTTTATTTTC+TGG | + | chr1_1:13313387-13313406 | None:intergenic | 20.0% |
| !! | CAGAAAATAAACAAATGAAA+AGG | - | chr1_1:13313385-13313404 | Msa0009120:CDS | 20.0% |
| !! | AAATCCAAAAAAAATGTTTC+CGG | + | chr1_1:13313496-13313515 | None:intergenic | 20.0% |
| !! | ATTTAGGTATTAAATTTAGC+TGG | - | chr1_1:13313776-13313795 | Msa0009120:intron | 20.0% |
| !!! | TAATATTTTATTACAGGTCA+TGG | - | chr1_1:13313943-13313962 | Msa0009120:intron | 20.0% |
| !!! | TGATTTATGAATTTTGAATC+GGG | + | chr1_1:13314016-13314035 | None:intergenic | 20.0% |
| !!! | CAATCAATTTGAATTTGTTT+AGG | - | chr1_1:13314065-13314084 | Msa0009120:intron | 20.0% |
| !!! | TGAATTTGTTTAGGTTAATT+TGG | - | chr1_1:13314074-13314093 | Msa0009120:intron | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr1_1:13314443-13314462 | None:intergenic | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr1_1:13314448-13314467 | Msa0009120:CDS | 20.0% |
| !!! | TAAGAAAAAGTTGACATTTT+AGG | + | chr1_1:13314537-13314556 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr1_1:13314542-13314561 | Msa0009120:five_prime_UTR | 20.0% |
| ! | TTGATATTGATATAGATGGA+TGG | + | chr1_1:13310489-13310508 | None:intergenic | 25.0% |
| ! | TATTACACAAACTCTAATCA+TGG | - | chr1_1:13310641-13310660 | Msa0009120:intron | 25.0% |
| ! | TTCAGAGAATTAAGATAGAA+AGG | + | chr1_1:13310714-13310733 | None:intergenic | 25.0% |
| ! | TTTCTGTGAGTTTACAATAA+TGG | - | chr1_1:13310847-13310866 | Msa0009120:CDS | 25.0% |
| ! | ATCAAACATGTTATTGATGT+TGG | + | chr1_1:13310920-13310939 | None:intergenic | 25.0% |
| ! | ATGTTCATTGAATAATGTTC+CGG | - | chr1_1:13311043-13311062 | Msa0009120:CDS | 25.0% |
| ! | ATGTAAAGTAATTTATGCTC+CGG | + | chr1_1:13311065-13311084 | None:intergenic | 25.0% |
| ! | CTATTTAATAGTTAGAGACT+TGG | - | chr1_1:13311099-13311118 | Msa0009120:CDS | 25.0% |
| !!! | TGGAATTTTGGTTTCAATTT+TGG | + | chr1_1:13311272-13311291 | None:intergenic | 25.0% |
| !!! | TAGTTGCTTTTAAAACTTTC+GGG | + | chr1_1:13311303-13311322 | None:intergenic | 25.0% |
| !! | TGTTACTGTGTAAATTTTCA+TGG | - | chr1_1:13311389-13311408 | Msa0009120:intron | 25.0% |
| ! | ATGTTAAGGTTTCTACAAAT+AGG | - | chr1_1:13311439-13311458 | Msa0009120:intron | 25.0% |
| ! | CAAAGATGAAAATTATGCAT+TGG | + | chr1_1:13311523-13311542 | None:intergenic | 25.0% |
| ! | ATATCATAACAGTTGTAGTA+GGG | - | chr1_1:13311668-13311687 | Msa0009120:CDS | 25.0% |
| ! | ATCAATTCTTGAAGAGTAAA+GGG | + | chr1_1:13311981-13312000 | None:intergenic | 25.0% |
| ! | AATATTGTTAGTAGTTGGTT+AGG | + | chr1_1:13312183-13312202 | None:intergenic | 25.0% |
| ! | ATATTCTGTTATAAAAGGAG+GGG | + | chr1_1:13312231-13312250 | None:intergenic | 25.0% |
| ! | GAATATTCTGTTATAAAAGG+AGG | + | chr1_1:13312233-13312252 | None:intergenic | 25.0% |
| !! | AACCCATGTTTAAAACTTTA+AGG | + | chr1_1:13312255-13312274 | None:intergenic | 25.0% |
| !! | TAGTTCTATTTGATAATAGG+TGG | - | chr1_1:13312311-13312330 | Msa0009120:intron | 25.0% |
| !!! | ATTTGTGGATTGATTTTGTA+TGG | - | chr1_1:13312347-13312366 | Msa0009120:intron | 25.0% |
| ! | TACAAAAAATGAATCATGGT+TGG | - | chr1_1:13312521-13312540 | Msa0009120:intron | 25.0% |
| !! | TCATATTACACTTGTTAGTA+AGG | + | chr1_1:13312660-13312679 | None:intergenic | 25.0% |
| !! | TACTGTTATTTACGACATAA+TGG | - | chr1_1:13313229-13313248 | Msa0009120:intron | 25.0% |
| !!! | TTCATTTGTTTATTTTCTGG+TGG | + | chr1_1:13313384-13313403 | None:intergenic | 25.0% |
| ! | AATCCAAAAAAAATGTTTCC+GGG | + | chr1_1:13313495-13313514 | None:intergenic | 25.0% |
| ! | TCAAGATAGGGAAATTAATT+CGG | + | chr1_1:13313671-13313690 | None:intergenic | 25.0% |
| !! | ATTTGTTTAGGTTAATTTGG+AGG | - | chr1_1:13314077-13314096 | Msa0009120:intron | 25.0% |
| ! | TACAAAGACAATTCAAAAGT+TGG | + | chr1_1:13314273-13314292 | None:intergenic | 25.0% |
| !! | ACTTTTGAATTGTCTTTGTA+TGG | - | chr1_1:13314273-13314292 | Msa0009120:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr1_1:13314438-13314457 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr1_1:13314547-13314566 | Msa0009120:five_prime_UTR | 25.0% |
| !! | TATTTGGGGTAGTTATTTTC+CGG | + | chr1_1:13310562-13310581 | None:intergenic | 30.0% |
| AATAACTACCCCAAATAAAC+CGG | - | chr1_1:13310565-13310584 | Msa0009120:three_prime_UTR | 30.0% | |
| AACATGTTATTGATGTTGGT+GGG | + | chr1_1:13310916-13310935 | None:intergenic | 30.0% | |
| AAACATGTTATTGATGTTGG+TGG | + | chr1_1:13310917-13310936 | None:intergenic | 30.0% | |
| CAATAACATGTTTGATTCTG+CGG | - | chr1_1:13310924-13310943 | Msa0009120:CDS | 30.0% | |
| ATTTCTGTTGGGAAATTTGT+GGG | + | chr1_1:13311186-13311205 | None:intergenic | 30.0% | |
| AATTTCTGTTGGGAAATTTG+TGG | + | chr1_1:13311187-13311206 | None:intergenic | 30.0% | |
| CACGTTAACTAATTTCTGTT+GGG | + | chr1_1:13311197-13311216 | None:intergenic | 30.0% | |
| TCACGTTAACTAATTTCTGT+TGG | + | chr1_1:13311198-13311217 | None:intergenic | 30.0% | |
| !! | ATAGTTGAGCTTCTTTTTCA+TGG | - | chr1_1:13311239-13311258 | Msa0009120:intron | 30.0% |
| ! | AAAACTTTCGGGTATTTGTA+TGG | + | chr1_1:13311292-13311311 | None:intergenic | 30.0% |
| CAATCCTGTGAGAAATAAAT+TGG | - | chr1_1:13311489-13311508 | Msa0009120:intron | 30.0% | |
| !! | TGTTCTAAGAGCACATATTA+AGG | + | chr1_1:13311549-13311568 | None:intergenic | 30.0% |
| CATATCATAACAGTTGTAGT+AGG | - | chr1_1:13311667-13311686 | Msa0009120:CDS | 30.0% | |
| TATCATAACAGTTGTAGTAG+GGG | - | chr1_1:13311669-13311688 | Msa0009120:CDS | 30.0% | |
| ACTGTAAGTGAAAATAGAGA+TGG | + | chr1_1:13311773-13311792 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTGCCAGTGATT+GGG | + | chr1_1:13311825-13311844 | None:intergenic | 30.0% |
| ! | TAATTTCTTTTGCCAGTGAT+TGG | + | chr1_1:13311826-13311845 | None:intergenic | 30.0% |
| ! | TGATACATCTTTTAGCAATG+AGG | - | chr1_1:13311942-13311961 | Msa0009120:CDS | 30.0% |
| ! | GATACATCTTTTAGCAATGA+GGG | - | chr1_1:13311943-13311962 | Msa0009120:CDS | 30.0% |
| TCAATTCTTGAAGAGTAAAG+GGG | + | chr1_1:13311980-13311999 | None:intergenic | 30.0% | |
| CATCAATTCTTGAAGAGTAA+AGG | + | chr1_1:13311982-13312001 | None:intergenic | 30.0% | |
| CTTTACTCTTCAAGAATTGA+TGG | - | chr1_1:13311980-13311999 | Msa0009120:CDS | 30.0% | |
| GTTTCTCTCAGATTAAAACT+TGG | + | chr1_1:13312157-13312176 | None:intergenic | 30.0% | |
| ! | ATTTTGTATGGAAAGTTAGC+TGG | - | chr1_1:13312359-13312378 | Msa0009120:intron | 30.0% |
| ! | TTTTGTATGGAAAGTTAGCT+GGG | - | chr1_1:13312360-13312379 | Msa0009120:intron | 30.0% |
| TCTTATAATCCCTACATGAT+CGG | - | chr1_1:13312741-13312760 | Msa0009120:CDS | 30.0% | |
| AATGAATACATAACCAAACG+AGG | + | chr1_1:13312847-13312866 | None:intergenic | 30.0% | |
| AATCAACTACACCATAAAGT+TGG | + | chr1_1:13312970-13312989 | None:intergenic | 30.0% | |
| CAGAAAAGTCTACAATAAGA+TGG | - | chr1_1:13313009-13313028 | Msa0009120:intron | 30.0% | |
| GCAATTATGTAGTAACAAGT+TGG | - | chr1_1:13313291-13313310 | Msa0009120:CDS | 30.0% | |
| !! | TTGGATTTTATGAGCCTTAT+TGG | - | chr1_1:13313508-13313527 | Msa0009120:intron | 30.0% |
| ATTTGGCAAGAATCAAGATA+GGG | + | chr1_1:13313683-13313702 | None:intergenic | 30.0% | |
| AATTTGGCAAGAATCAAGAT+AGG | + | chr1_1:13313684-13313703 | None:intergenic | 30.0% | |
| ACTTGTAGAAATACCTATCA+TGG | + | chr1_1:13313715-13313734 | None:intergenic | 30.0% | |
| GCTAGAAACTGATTGAAAAA+TGG | + | chr1_1:13314145-13314164 | None:intergenic | 30.0% | |
| GAGCAATATGCATTTGTATA+GGG | + | chr1_1:13314210-13314229 | None:intergenic | 30.0% | |
| TGAGCAATATGCATTTGTAT+AGG | + | chr1_1:13314211-13314230 | None:intergenic | 30.0% | |
| ACAATAGCATCTTTGTAACA+AGG | - | chr1_1:13314375-13314394 | Msa0009120:intron | 30.0% | |
| ! | TATTTTCATTATACTCCCTC+CGG | - | chr1_1:13314416-13314435 | Msa0009120:intron | 30.0% |
| ! | CATTTCTTTAGAGATAGAGT+TGG | - | chr1_1:13314669-13314688 | Msa0009120:five_prime_UTR | 30.0% |
| ! | TCTTTCTCTCCTATCTGTTT+TGG | - | chr1_1:13310530-13310549 | Msa0009120:three_prime_UTR | 35.0% |
| ATAACTACCCCAAATAAACC+GGG | - | chr1_1:13310566-13310585 | Msa0009120:three_prime_UTR | 35.0% | |
| TTTAGTTATCTGAGTAAGCC+CGG | + | chr1_1:13310587-13310606 | None:intergenic | 35.0% | |
| ATCATGGAACAAGATGATGA+TGG | - | chr1_1:13310657-13310676 | Msa0009120:intron | 35.0% | |
| ! | AAGGTACATACCAGTTCTTT+TGG | + | chr1_1:13310688-13310707 | None:intergenic | 35.0% |
| ! | TTTTCTTCATACGCAAGAGT+CGG | + | chr1_1:13311153-13311172 | None:intergenic | 35.0% |
| ! | CGGGTATTTGTATGGAATTT+TGG | + | chr1_1:13311284-13311303 | None:intergenic | 35.0% |
| CAGTAACACACATCATTAGA+CGG | + | chr1_1:13311377-13311396 | None:intergenic | 35.0% | |
| TCATGCTAACTTATGTCCTT+AGG | - | chr1_1:13311412-13311431 | Msa0009120:intron | 35.0% | |
| CATGCTAACTTATGTCCTTA+GGG | - | chr1_1:13311413-13311432 | Msa0009120:intron | 35.0% | |
| AAACCTTAACATGTTCCCTA+AGG | + | chr1_1:13311431-13311450 | None:intergenic | 35.0% | |
| ! | TGTGCCAATTTATTTCTCAC+AGG | + | chr1_1:13311496-13311515 | None:intergenic | 35.0% |
| !! | TATTTGGTGTGCAATATTGC+AGG | - | chr1_1:13311622-13311641 | Msa0009120:CDS | 35.0% |
| !! | ATTTGGTGTGCAATATTGCA+GGG | - | chr1_1:13311623-13311642 | Msa0009120:CDS | 35.0% |
| TTATAAAAGGAGGGGAAAAG+TGG | + | chr1_1:13312223-13312242 | None:intergenic | 35.0% | |
| CTTGTCAGTTTGTGAAAGTT+GGG | + | chr1_1:13312801-13312820 | None:intergenic | 35.0% | |
| GGTTATGTATTCATTGCAGT+TGG | - | chr1_1:13312852-13312871 | Msa0009120:intron | 35.0% | |
| AGATAAGGACAGTAAGACAA+AGG | + | chr1_1:13312878-13312897 | None:intergenic | 35.0% | |
| TCAACAAACTACCTGAGATA+AGG | + | chr1_1:13312893-13312912 | None:intergenic | 35.0% | |
| ATCCTCTACAACCAACTTTA+TGG | - | chr1_1:13312956-13312975 | Msa0009120:intron | 35.0% | |
| !!! | GTCTACTTACAAAGGCATTT+TGG | - | chr1_1:13313078-13313097 | Msa0009120:intron | 35.0% |
| !!! | ACACCCGGAAACATTTTTTT+TGG | - | chr1_1:13313489-13313508 | Msa0009120:intron | 35.0% |
| TACTATGCATACTTCTCCAA+GGG | + | chr1_1:13313541-13313560 | None:intergenic | 35.0% | |
| TTACTATGCATACTTCTCCA+AGG | + | chr1_1:13313542-13313561 | None:intergenic | 35.0% | |
| TGCATAGTAATCCACATGAT+TGG | - | chr1_1:13313552-13313571 | Msa0009120:intron | 35.0% | |
| ATTTCAACGACGCGAAAAAA+CGG | + | chr1_1:13313974-13313993 | None:intergenic | 35.0% | |
| !!! | TTTTTTCGCGTCGTTGAAAT+GGG | - | chr1_1:13313974-13313993 | Msa0009120:intron | 35.0% |
| ATTGAAAAATGGCATTGCCA+TGG | + | chr1_1:13314134-13314153 | None:intergenic | 35.0% | |
| !! | AATCAGTTTCTAGCTCTGTT+GGG | - | chr1_1:13314151-13314170 | Msa0009120:intron | 35.0% |
| ATAGGGAAGAAGACAACTAA+TGG | + | chr1_1:13314193-13314212 | None:intergenic | 35.0% | |
| TCTTTGTATGGTTGTCTCAT+TGG | - | chr1_1:13314285-13314304 | Msa0009120:intron | 35.0% | |
| ATGAATTGAAGCAACTACAG+CGG | + | chr1_1:13314311-13314330 | None:intergenic | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr1_1:13314551-13314570 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr1_1:13314550-13314569 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr1_1:13314550-13314569 | Msa0009120:five_prime_UTR | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr1_1:13314551-13314570 | Msa0009120:five_prime_UTR | 35.0% | |
| GTAGTATATATGTCGAGCTT+TGG | - | chr1_1:13314575-13314594 | Msa0009120:five_prime_UTR | 35.0% | |
| TGAGTAAGCCCGGTTTATTT+GGG | + | chr1_1:13310577-13310596 | None:intergenic | 40.0% | |
| GATGGTAAAGCCAAAAGAAC+TGG | - | chr1_1:13310675-13310694 | Msa0009120:intron | 40.0% | |
| TGGACACTTAAGCAATTCGT+AGG | - | chr1_1:13311119-13311138 | Msa0009120:CDS | 40.0% | |
| TGTCCTTAGGGAACATGTTA+AGG | - | chr1_1:13311425-13311444 | Msa0009120:intron | 40.0% | |
| GTCTTGTAGCTGATTGCTAT+AGG | - | chr1_1:13311791-13311810 | Msa0009120:intron | 40.0% | |
| TAGAACAGGGCAAAATTCAG+TGG | + | chr1_1:13311916-13311935 | None:intergenic | 40.0% | |
| AAAGTTAGCTGGGATAACAG+TGG | - | chr1_1:13312370-13312389 | Msa0009120:intron | 40.0% | |
| AAGTTAGCTGGGATAACAGT+GGG | - | chr1_1:13312371-13312390 | Msa0009120:intron | 40.0% | |
| GTTGTTTGCGTCCATAGAAA+AGG | - | chr1_1:13312696-13312715 | Msa0009120:intron | 40.0% | |
| ! | CAGCTTCAAGTCCTTTTCTA+TGG | + | chr1_1:13312710-13312729 | None:intergenic | 40.0% |
| !! | AATCCCTACATGATCGGTTT+TGG | - | chr1_1:13312747-13312766 | Msa0009120:CDS | 40.0% |
| !! | ATCCCTACATGATCGGTTTT+GGG | - | chr1_1:13312748-13312767 | Msa0009120:CDS | 40.0% |
| ATCCCAAAACCGATCATGTA+GGG | + | chr1_1:13312753-13312772 | None:intergenic | 40.0% | |
| TATCCCAAAACCGATCATGT+AGG | + | chr1_1:13312754-13312773 | None:intergenic | 40.0% | |
| CCTTGTCAGTTTGTGAAAGT+TGG | + | chr1_1:13312802-13312821 | None:intergenic | 40.0% | |
| CCAACTTTCACAAACTGACA+AGG | - | chr1_1:13312799-13312818 | Msa0009120:CDS | 40.0% | |
| ATAACCAAACGAGGTGATAG+CGG | + | chr1_1:13312838-13312857 | None:intergenic | 40.0% | |
| TGTCTTACTGTCCTTATCTC+AGG | - | chr1_1:13312879-13312898 | Msa0009120:intron | 40.0% | |
| ! | CACCATAAAGTTGGTTGTAG+AGG | + | chr1_1:13312961-13312980 | None:intergenic | 40.0% |
| GATCATAAAATCGACCGTAG+AGG | - | chr1_1:13313031-13313050 | Msa0009120:intron | 40.0% | |
| AAAATCGACCGTAGAGGATA+CGG | - | chr1_1:13313037-13313056 | Msa0009120:intron | 40.0% | |
| CTATGAATCCGTATCCTCTA+CGG | + | chr1_1:13313048-13313067 | None:intergenic | 40.0% | |
| !! | TTTTGGCTAAGAGCAGGAAA+AGG | - | chr1_1:13313095-13313114 | Msa0009120:intron | 40.0% |
| TTTGGCTAAGAGCAGGAAAA+GGG | - | chr1_1:13313096-13313115 | Msa0009120:intron | 40.0% | |
| TATTTGTGTTCCGGTTATGC+TGG | + | chr1_1:13313129-13313148 | None:intergenic | 40.0% | |
| AGCATAACCGGAACACAAAT+AGG | - | chr1_1:13313128-13313147 | Msa0009120:intron | 40.0% | |
| GCATAACCGGAACACAAATA+GGG | - | chr1_1:13313129-13313148 | Msa0009120:intron | 40.0% | |
| TTCCTACTATGTAGTTGCCT+TGG | - | chr1_1:13313444-13313463 | Msa0009120:CDS | 40.0% | |
| AAAAAATGTTTCCGGGTGTG+TGG | + | chr1_1:13313488-13313507 | None:intergenic | 40.0% | |
| ATGATTGGAGCATATCAGGT+TGG | - | chr1_1:13313567-13313586 | Msa0009120:intron | 40.0% | |
| !!! | GTTTTTTCGCGTCGTTGAAA+TGG | - | chr1_1:13313973-13313992 | Msa0009120:intron | 40.0% |
| AAATGGGTGCTAATATCGTG+TGG | - | chr1_1:13313990-13314009 | Msa0009120:intron | 40.0% | |
| GACTATTCATTTAACGTGCG+TGG | - | chr1_1:13314037-13314056 | Msa0009120:intron | 40.0% | |
| AATAGCAACCATTCTTGCCA+TGG | - | chr1_1:13314114-13314133 | Msa0009120:intron | 40.0% | |
| !! | CAATCAGTTTCTAGCTCTGT+TGG | - | chr1_1:13314150-13314169 | Msa0009120:intron | 40.0% |
| ACACCACCTCAATGATAACA+CGG | + | chr1_1:13314245-13314264 | None:intergenic | 40.0% | |
| GACATATATACTACTCCCTC+CGG | + | chr1_1:13314569-13314588 | None:intergenic | 40.0% | |
| !!! | CTATCTGTTTTGGCAGTGAC+CGG | - | chr1_1:13310540-13310559 | Msa0009120:three_prime_UTR | 45.0% |
| GAGTAAGCCCGGTTTATTTG+GGG | + | chr1_1:13310576-13310595 | None:intergenic | 45.0% | |
| CTGAGTAAGCCCGGTTTATT+TGG | + | chr1_1:13310578-13310597 | None:intergenic | 45.0% | |
| GCAATATTGCAGGGAATGTG+TGG | - | chr1_1:13311632-13311651 | Msa0009120:CDS | 45.0% | |
| ATAACAGTTGTAGTAGGGGC+AGG | - | chr1_1:13311673-13311692 | Msa0009120:CDS | 45.0% | |
| TAACAGTTGTAGTAGGGGCA+GGG | - | chr1_1:13311674-13311693 | Msa0009120:CDS | 45.0% | |
| ACCAGCTATCCATCCTAGTT+GGG | + | chr1_1:13311725-13311744 | None:intergenic | 45.0% | |
| TACCAGCTATCCATCCTAGT+TGG | + | chr1_1:13311726-13311745 | None:intergenic | 45.0% | |
| CTAGGATGGATAGCTGGTAT+AGG | - | chr1_1:13311727-13311746 | Msa0009120:CDS | 45.0% | |
| CAAGCTGTCAAGAGCTACTT+AGG | - | chr1_1:13311856-13311875 | Msa0009120:intron | 45.0% | |
| GGAACGATGCAAGTGATTTG+TGG | - | chr1_1:13312332-13312351 | Msa0009120:intron | 45.0% | |
| !!! | AAGGCATTTTGGCTAAGAGC+AGG | - | chr1_1:13313089-13313108 | Msa0009120:intron | 45.0% |
| TTGGCTAAGAGCAGGAAAAG+GGG | - | chr1_1:13313097-13313116 | Msa0009120:intron | 45.0% | |
| TTCTGGCCCTATTTGTGTTC+CGG | + | chr1_1:13313138-13313157 | None:intergenic | 45.0% | |
| TTCTCTGCAGCAGTTAGTTC+TGG | + | chr1_1:13313155-13313174 | None:intergenic | 45.0% | |
| TAACTGCTGCAGAGAAAGTG+TGG | - | chr1_1:13313159-13313178 | Msa0009120:intron | 45.0% | |
| TGGCGTGTTTGCACTTCAAT+GGG | - | chr1_1:13313179-13313198 | Msa0009120:intron | 45.0% | |
| ATGAAAAGGGCCAACGTGAT+AGG | - | chr1_1:13313399-13313418 | Msa0009120:CDS | 45.0% | |
| TGAAAAGGGCCAACGTGATA+GGG | - | chr1_1:13313400-13313419 | Msa0009120:CDS | 45.0% | |
| ! | AGTTGATACCCCTATCACGT+TGG | + | chr1_1:13313412-13313431 | None:intergenic | 45.0% |
| AGCCAAGGCAACTACATAGT+AGG | + | chr1_1:13313449-13313468 | None:intergenic | 45.0% | |
| CCAAGGGCTACTATCCAATA+AGG | + | chr1_1:13313525-13313544 | None:intergenic | 45.0% | |
| CCTTATTGGATAGTAGCCCT+TGG | - | chr1_1:13313522-13313541 | Msa0009120:intron | 45.0% | |
| CCTGATATGCTCCAATCATG+TGG | + | chr1_1:13313566-13313585 | None:intergenic | 45.0% | |
| CCACATGATTGGAGCATATC+AGG | - | chr1_1:13313563-13313582 | Msa0009120:intron | 45.0% | |
| TGTTGGGAGCGATTGGATTT+GGG | - | chr1_1:13314167-13314186 | Msa0009120:intron | 45.0% | |
| GCATACCCGTGTTATCATTG+AGG | - | chr1_1:13314236-13314255 | Msa0009120:intron | 45.0% | |
| TACCCGTGTTATCATTGAGG+TGG | - | chr1_1:13314239-13314258 | Msa0009120:intron | 45.0% | |
| CACCACCTCAATGATAACAC+GGG | + | chr1_1:13314244-13314263 | None:intergenic | 45.0% | |
| !! | TAAAAAATAAAATATTTGAT+TGG | - | chr1_1:13310456-13310475 | Msa0009120:three_prime_UTR | 5.0% |
| !! | TAATGTAATATTATTATATA+TGG | + | chr1_1:13312481-13312500 | None:intergenic | 5.0% |
| !! | TAAAATATTATTTGATATAT+TGG | - | chr1_1:13313745-13313764 | Msa0009120:intron | 5.0% |
| !!! | ATAATTTAATATTTTATTAC+AGG | - | chr1_1:13313937-13313956 | Msa0009120:intron | 5.0% |
| CGGTCACTGCCAAAACAGAT+AGG | + | chr1_1:13310542-13310561 | None:intergenic | 50.0% | |
| ! | TTGGTGGGCAGAACTGATGA+AGG | + | chr1_1:13310901-13310920 | None:intergenic | 50.0% |
| AACAGTTGTAGTAGGGGCAG+GGG | - | chr1_1:13311675-13311694 | Msa0009120:CDS | 50.0% | |
| TATCCATCCTAGTTGGGCCA+TGG | + | chr1_1:13311719-13311738 | None:intergenic | 50.0% | |
| AGGTTTCCAGACCCAATCAC+TGG | - | chr1_1:13311811-13311830 | Msa0009120:intron | 50.0% | |
| ! | CTTTTGCCAGTGATTGGGTC+TGG | + | chr1_1:13311820-13311839 | None:intergenic | 50.0% |
| ! | CTTTTAGCAATGAGGGCGAG+CGG | - | chr1_1:13311950-13311969 | Msa0009120:CDS | 50.0% |
| GGAGCTCAAGAGCTCTACAA+TGG | - | chr1_1:13312097-13312116 | Msa0009120:intron | 50.0% | |
| !! | AAACGAGGTGATAGCGGCAA+TGG | + | chr1_1:13312832-13312851 | None:intergenic | 50.0% |
| ATTGCCGCTATCACCTCGTT+TGG | - | chr1_1:13312831-13312850 | Msa0009120:intron | 50.0% | |
| GTGGCGTGTTTGCACTTCAA+TGG | - | chr1_1:13313178-13313197 | Msa0009120:intron | 50.0% | |
| GAAAAGGGCCAACGTGATAG+GGG | - | chr1_1:13313401-13313420 | Msa0009120:CDS | 50.0% | |
| !!! | TGCCTTGGCTATGCTGCTTT+TGG | - | chr1_1:13313459-13313478 | Msa0009120:CDS | 50.0% |
| CACCAAAAGCAGCATAGCCA+AGG | + | chr1_1:13313464-13313483 | None:intergenic | 50.0% | |
| TGGCATTGCCATGGCAAGAA+TGG | + | chr1_1:13314125-13314144 | None:intergenic | 50.0% | |
| CTGTTGGGAGCGATTGGATT+TGG | - | chr1_1:13314166-13314185 | Msa0009120:intron | 50.0% | |
| !! | AGGGGTGTTGGCTCTAGCAT+GGG | - | chr1_1:13311693-13311712 | Msa0009120:CDS | 55.0% |
| GCCCAACTAGGATGGATAGC+TGG | - | chr1_1:13311721-13311740 | Msa0009120:CDS | 55.0% | |
| ! | GGGGCATCTACCAGCATAAC+CGG | - | chr1_1:13313116-13313135 | Msa0009120:intron | 55.0% |
| !! | GCTTTTGGTGACCACACACC+CGG | - | chr1_1:13313474-13313493 | Msa0009120:CDS | 55.0% |
| !! | CTAGCTCTGTTGGGAGCGAT+TGG | - | chr1_1:13314160-13314179 | Msa0009120:intron | 55.0% |
| ! | TGTAGTAGGGGCAGGGGTGT+TGG | - | chr1_1:13311681-13311700 | Msa0009120:CDS | 60.0% |
| !! | CAGGGGTGTTGGCTCTAGCA+TGG | - | chr1_1:13311692-13311711 | Msa0009120:CDS | 60.0% |
| !! | GTTGGCTCTAGCATGGGCCA+TGG | - | chr1_1:13311699-13311718 | Msa0009120:CDS | 60.0% |
| GCATGGGCCATGGCCCAACT+AGG | - | chr1_1:13311709-13311728 | Msa0009120:CDS | 65.0% | |
| GGGCCATGGCCCAACTAGGA+TGG | - | chr1_1:13311713-13311732 | Msa0009120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13310415 | 13314729 | 13310415 | ID=Msa0009120;Name=Msa0009120 |
| chr1_1 | mRNA | 13310415 | 13314729 | 13310415 | ID=Msa0009120-mRNA-1;Parent=Msa0009120;Name=Msa0009120-mRNA-1;_AED=0.19;_eAED=0.19;_QI=221|0.57|0.62|1|0.85|0.75|8|269|412 |
| chr1_1 | exon | 13310415 | 13310641 | 13310415 | ID=Msa0009120-mRNA-1:exon:5036;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13310721 | 13311185 | 13310721 | ID=Msa0009120-mRNA-1:exon:5035;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13311560 | 13311781 | 13311560 | ID=Msa0009120-mRNA-1:exon:5034;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13311894 | 13312052 | 13311894 | ID=Msa0009120-mRNA-1:exon:5033;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13312244 | 13312273 | 13312244 | ID=Msa0009120-mRNA-1:exon:5032;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13312721 | 13312830 | 13312721 | ID=Msa0009120-mRNA-1:exon:5031;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13313267 | 13313500 | 13313267 | ID=Msa0009120-mRNA-1:exon:5030;Parent=Msa0009120-mRNA-1 |
| chr1_1 | exon | 13314448 | 13314729 | 13314448 | ID=Msa0009120-mRNA-1:exon:5029;Parent=Msa0009120-mRNA-1 |
| chr1_1 | five_prime_UTR | 13314509 | 13314729 | 13314509 | ID=Msa0009120-mRNA-1:five_prime_utr;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13314448 | 13314508 | 13314448 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13313267 | 13313500 | 13313267 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13312721 | 13312830 | 13312721 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13312244 | 13312273 | 13312244 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13311894 | 13312052 | 13311894 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13311560 | 13311781 | 13311560 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | CDS | 13310763 | 13311185 | 13310763 | ID=Msa0009120-mRNA-1:cds;Parent=Msa0009120-mRNA-1 |
| chr1_1 | three_prime_UTR | 13310721 | 13310762 | 13310721 | ID=Msa0009120-mRNA-1:three_prime_utr;Parent=Msa0009120-mRNA-1 |
| chr1_1 | three_prime_UTR | 13310415 | 13310641 | 13310415 | ID=Msa0009120-mRNA-1:three_prime_utr;Parent=Msa0009120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
