AlfalfaGEDB | Msa0058580

M. sativa cultivar zhongmu-4 / Msa0058580

KEGG: -
GO: -
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058580	RHN76663.1	95.075	467	10	3	1	455	1	466	0.0	894

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058580	sp\|O80592\|AAP8_ARATH	52.097	453	202	4	12	451	21	471	1.81e-169	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058580	A0A396JK49	95.075	467	10	3	1	455	1	466	0.0	894

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009120	Msa0058580	0.838152	3.407131e-57	-8.615850e-47
Msa0058580	Msa0103450	0.844079	9.437996e-59	-8.615850e-47
Msa0058580	Msa0149810	0.859902	2.999295e-63	-8.615850e-47
Msa0058580	Msa0371180	0.822869	1.880750e-53	-8.615850e-47
Msa0058580	Msa0422500	0.800746	1.246969e-48	-8.615850e-47
Msa0058580	Msa0450350	0.816002	6.920777e-52	-8.615850e-47
Msa0058580	Msa0511250	0.802693	4.969242e-49	-8.615850e-47
Msa0058580	Msa0799060	0.805841	1.098763e-49	-8.615850e-47
Msa0058580	Msa0810760	0.810871	9.292796e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058580	MtrunA17_Chr1g0146331	95.075	467	10	3	1	455	1	466	0.0	894
Msa0058580	MtrunA17_Chr1g0146391	84.430	456	59	2	10	455	4	457	0.0	785
Msa0058580	MtrunA17_Chr2g0293331	78.993	457	84	2	9	455	3	457	0.0	747
Msa0058580	MtrunA17_Chr3g0140531	66.595	467	142	3	1	455	7	471	0.0	647
Msa0058580	MtrunA17_Chr1g0146411	56.264	455	178	6	12	454	27	472	0.0	521
Msa0058580	MtrunA17_Chr3g0140541	52.967	455	198	4	12	454	19	469	7.27e-165	473
Msa0058580	MtrunA17_Chr3g0140761	48.148	459	220	5	12	455	27	482	2.02e-159	459
Msa0058580	MtrunA17_Chr1g0146491	48.140	457	223	4	12	455	17	472	2.03e-158	456
Msa0058580	MtrunA17_Chr8g0384661	47.265	457	222	6	8	451	40	490	2.45e-150	437
Msa0058580	MtrunA17_Chr1g0206871	47.588	456	214	5	18	451	15	467	2.88e-150	436

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0058580	AT1G10010.2	52.097	453	202	4	12	451	22	472	1.33e-170	488
Msa0058580	AT1G10010.1	52.097	453	202	4	12	451	21	471	1.84e-170	488
Msa0058580	AT1G58360.1	51.656	453	204	4	12	451	30	480	1.06e-168	483
Msa0058580	AT5G49630.1	49.780	454	213	5	12	451	26	478	5.07e-159	459
Msa0058580	AT1G77380.1	48.786	453	216	5	12	451	23	472	2.30e-152	441
Msa0058580	AT5G63850.1	46.035	454	228	5	12	451	12	462	5.36e-146	425
Msa0058580	AT5G09220.1	45.154	454	232	5	12	451	39	489	1.95e-144	422
Msa0058580	AT1G44100.1	45.197	458	231	5	12	451	21	476	4.57e-143	418
Msa0058580	AT5G23810.1	44.159	428	216	8	11	420	18	440	1.18e-116	350
Msa0058580	AT5G23810.2	45.482	332	161	7	11	327	18	344	7.97e-89	275

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Find 119 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGGTGATAGCGGCAA+TGG	0.553749	1_2:-15066447	None:intergenic
AAAGCTTGCTGGGATAACAG+TGG	0.698440	1_2:+15065992	Msa0058580:CDS
AAATGGGTGCTAATATCGCG+TGG	0.670178	1_2:+15067445	Msa0058580:CDS
AACAACTACCCCAAATAAAC+CGG	0.440192	1_2:+15064275	Msa0058580:five_prime_UTR
AACAGTTGTAGTAGGGGCAG+GGG	0.543889	1_2:+15065353	Msa0058580:CDS
AAGCTTGCTGGGATAACAGT+GGG	0.590727	1_2:+15065993	Msa0058580:CDS
AAGGTACATACCAGTTCTTT+TGG	0.354167	1_2:-15064395	None:intergenic
AATCAATTTCTAGCTCTGTT+GGG	0.451943	1_2:+15067606	Msa0058580:CDS
AATCCCTACATGATCGGTTT+TGG	0.237586	1_2:+15066365	Msa0058580:CDS
AATGAATACATAACCAAACG+AGG	0.738565	1_2:-15066462	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCATGAATGATATAGATGGA+TGG	-	chr1_2:15064211-15064230	None:intergenic	30.0%
ACACTCATGAATGATATAGA+TGG	-	chr1_2:15064215-15064234	None:intergenic	30.0%
ATTTAGTTATCTGAGTAAGC+CGG	-	chr1_2:15064297-15064316	None:intergenic	30.0%
TGATTTCGTAAGCTTATACT+TGG	+	chr1_2:15064686-15064705	Msa0058580:intron	30.0%
AAACCTTAAGATGTTTCCTA+AGG	-	chr1_2:15065109-15065128	None:intergenic	30.0%
CAATCCTGTGAGAAATAAAT+TGG	+	chr1_2:15065167-15065186	Msa0058580:intron	30.0%
CATATCATAACAGTTGTAGT+AGG	+	chr1_2:15065345-15065364	Msa0058580:CDS	30.0%
TATCATAACAGTTGTAGTAG+GGG	+	chr1_2:15065347-15065366	Msa0058580:CDS	30.0%
ACTGTAAGTGAAAATAGAGA+TGG	-	chr1_2:15065451-15065470	None:intergenic	30.0%
TCAATTCTTGAAGAGTAAAG+GGG	-	chr1_2:15065658-15065677	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	15064139	15068202	15064139	ID=Msa0058580;Name=Msa0058580
chr1_2	mRNA	15064139	15068202	15064139	ID=Msa0058580-mRNA-1;Parent=Msa0058580;Name=Msa0058580-mRNA-1;_AED=0.24;_eAED=0.24;_QI=207\|0.71\|0.75\|1\|0.85\|0.75\|8\|346\|455
chr1_2	exon	15064139	15064406	15064139	ID=Msa0058580-mRNA-1:exon:6074;Parent=Msa0058580-mRNA-1
chr1_2	exon	15065322	15065555	15065322	ID=Msa0058580-mRNA-1:exon:6075;Parent=Msa0058580-mRNA-1
chr1_2	exon	15065952	15066045	15065952	ID=Msa0058580-mRNA-1:exon:6076;Parent=Msa0058580-mRNA-1
chr1_2	exon	15066331	15066505	15066331	ID=Msa0058580-mRNA-1:exon:6077;Parent=Msa0058580-mRNA-1
chr1_2	exon	15066711	15066869	15066711	ID=Msa0058580-mRNA-1:exon:6078;Parent=Msa0058580-mRNA-1
chr1_2	exon	15066982	15067203	15066982	ID=Msa0058580-mRNA-1:exon:6079;Parent=Msa0058580-mRNA-1
chr1_2	exon	15067414	15067883	15067414	ID=Msa0058580-mRNA-1:exon:6080;Parent=Msa0058580-mRNA-1
chr1_2	exon	15067904	15068202	15067904	ID=Msa0058580-mRNA-1:exon:6081;Parent=Msa0058580-mRNA-1
chr1_2	five_prime_UTR	15064139	15064345	15064139	ID=Msa0058580-mRNA-1:five_prime_utr;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15064346	15064406	15064346	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15065322	15065555	15065322	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15065952	15066045	15065952	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15066331	15066505	15066331	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15066711	15066869	15066711	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15066982	15067203	15066982	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	CDS	15067414	15067836	15067414	ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2	three_prime_UTR	15067837	15067883	15067837	ID=Msa0058580-mRNA-1:three_prime_utr;Parent=Msa0058580-mRNA-1
chr1_2	three_prime_UTR	15067904	15068202	15067904	ID=Msa0058580-mRNA-1:three_prime_utr;Parent=Msa0058580-mRNA-1

Gene Sequence

>Msa0058580

ATGAGTATTACACAAACTCTAATCATGGAACAAGATGATGATGGTAAAGCCAAAAGAACTGGGAATGTGTGGACTGCTGTTACACATATCATAACAGTTGTAGTAGGGGCAGGGGTGTTGGCTCTAGCATGGGCCATGGCCCAACTAGGATGGATAGCTGGTATAGCCAGTATACTAACCTTTGCATCCATCTCTATTTTCACTTACAGTCTTGTAGCTGATTGCTATAGGTTTCCAGACCCAATCACTGGCAAAAGAAATTATACTTACATGCAAGCTGTCAAGAGCTACTTAGGTGGAACGATGCAAGTGATTTGTGGATTGATTTTGTATGGAAAGCTTGCTGGGATAACAGTGGGCTACACAATAACTTCATCGACAAGCTTAGCAAAAGGACTTGAAGCTGATTGCAGCACTTCTTATAATCCCTACATGATCGGTTTTGGGATATTGCAGATTTTCTTGTCTCAAATTCCCAACTTTCACAAACTGACATGGATCTCAACCATTGCCGCTATCACCTCGTTTGGTTATGTATTCATTGCAGTTGGCCTTTGTCTTAGTGCATTTTGGCTAAGAGCAGGAAAAGGGGCATCTACCAGCATAACCGGAACACAAATAGGGCCAGAACTAACTGCTGCAGAGAAAGTGTGGCGTGTTTGCACTTCAATGGGAAACATAGCTCTTGCTAGCACTTACGCTACTGTTATTTACGACATAATGGATACATTAAAGTCACATCCACCAGAAAATAAACAAATGAAAAGGGCCAACGTGATAGGGGTATCAACAATGACAATGATATTCCTACTATGTAGTTGCCTTGGCTATGCTGCTTTTGGTGACCACACACCAGGAAACATTTTTTTTGGATTTTATGAGCCCTATTGGATAGTTGCCCTTGGAGAAGTATGCATAGTAATCCACATGATTGGAGCATATCAGGTCATGGCACAACCATTTTTTCGCGTCGTTGAAATGGGTGCTAATATCGCGTGGCCCGATTCAAAATTCATAAATCAAGACTATTCATTTAACGTGCGTGGTGCAACAATCAAGTTGAACTTATTTAGGTTAATTTGGAGGACGATATTTGTGATACTAGCAACCATTCTTGCCATGGCAATGCCATTTTTCAATCAATTTCTAGCTCTGTTGGGAGCAATTGGATTTGGTCCATTAGTTGTCTTCTTCCCTATACAAATGCATATTGCTCAGAAGCGCATACCCGTGTTATCATTGAGGTGGTGTGCGCTCCAACTTTTGAATTGTCTTTGTATGGTTGTCTCATTGGCCGCTGTAGTTGCTTCAATTCATGAAATTAGTGAAAATATTCACAAATACAAGATTTTTGCTTATAAACAATAG

Protein sequence

>Msa0058580

MSITQTLIMEQDDDGKAKRTGNVWTAVTHIITVVVGAGVLALAWAMAQLGWIAGIASILTFASISIFTYSLVADCYRFPDPITGKRNYTYMQAVKSYLGGTMQVICGLILYGKLAGITVGYTITSSTSLAKGLEADCSTSYNPYMIGFGILQIFLSQIPNFHKLTWISTIAAITSFGYVFIAVGLCLSAFWLRAGKGASTSITGTQIGPELTAAEKVWRVCTSMGNIALASTYATVIYDIMDTLKSHPPENKQMKRANVIGVSTMTMIFLLCSCLGYAAFGDHTPGNIFFGFYEPYWIVALGEVCIVIHMIGAYQVMAQPFFRVVEMGANIAWPDSKFINQDYSFNVRGATIKLNLFRLIWRTIFVILATILAMAMPFFNQFLALLGAIGFGPLVVFFPIQMHIAQKRIPVLSLRWCALQLLNCLCMVVSLAAVVASIHEISENIHKYKIFAYKQ*