AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058580 MtrunA17_Chr1g0146331 95.075 467 10 3 1 455 1 466 0.0 894
Msa0058580 MtrunA17_Chr1g0146391 84.430 456 59 2 10 455 4 457 0.0 785
Msa0058580 MtrunA17_Chr2g0293331 78.993 457 84 2 9 455 3 457 0.0 747
Msa0058580 MtrunA17_Chr3g0140531 66.595 467 142 3 1 455 7 471 0.0 647
Msa0058580 MtrunA17_Chr1g0146411 56.264 455 178 6 12 454 27 472 0.0 521
Msa0058580 MtrunA17_Chr3g0140541 52.967 455 198 4 12 454 19 469 7.27e-165 473
Msa0058580 MtrunA17_Chr3g0140761 48.148 459 220 5 12 455 27 482 2.02e-159 459
Msa0058580 MtrunA17_Chr1g0146491 48.140 457 223 4 12 455 17 472 2.03e-158 456
Msa0058580 MtrunA17_Chr8g0384661 47.265 457 222 6 8 451 40 490 2.45e-150 437
Msa0058580 MtrunA17_Chr1g0206871 47.588 456 214 5 18 451 15 467 2.88e-150 436
Msa0058580 MtrunA17_Chr1g0159761 46.476 454 226 5 12 451 21 471 3.67e-145 423
Msa0058580 MtrunA17_Chr3g0125081 47.253 455 218 6 12 451 28 475 6.46e-145 422
Msa0058580 MtrunA17_Chr3g0125101 46.930 456 219 7 12 451 28 476 1.08e-142 417
Msa0058580 MtrunA17_Chr3g0130651 48.451 452 214 6 12 451 20 464 2.29e-142 415
Msa0058580 MtrunA17_Chr3g0125091 45.815 454 227 6 12 451 28 476 7.27e-141 412
Msa0058580 MtrunA17_Chr3g0130641 44.201 457 230 6 12 452 27 474 1.20e-138 406
Msa0058580 MtrunA17_Chr4g0037201 44.444 459 233 6 12 451 53 508 8.37e-138 405
Msa0058580 MtrunA17_Chr3g0103231 41.203 449 245 7 12 446 17 460 3.60e-125 371
Msa0058580 MtrunA17_Chr3g0103211 40.807 446 242 7 12 440 17 457 9.41e-121 360
Msa0058580 MtrunA17_Chr5g0447221 41.087 460 243 10 2 445 18 465 1.45e-116 349
Msa0058580 MtrunA17_Chr3g0103221 39.597 447 251 7 15 447 27 468 7.65e-116 348
Msa0058580 MtrunA17_Chr3g0103271 41.216 444 242 6 12 441 21 459 9.09e-114 342
Msa0058580 MtrunA17_Chr1g0206851 43.989 366 185 5 99 451 19 377 1.31e-106 321
Msa0058580 MtrunA17_Chr5g0447231 37.885 454 263 6 2 441 9 457 8.08e-104 317
Msa0058580 MtrunA17_Chr1g0206831 45.981 311 158 4 131 438 24 327 1.89e-95 291
Msa0058580 MtrunA17_Chr3g0103251 35.244 349 193 4 123 441 22 367 3.01e-77 245
Msa0058580 MtrunA17_Chr5g0402151 40.940 298 128 6 21 306 3 264 2.19e-70 224
Msa0058580 MtrunA17_Chr1g0206821 47.248 218 112 2 237 451 310 527 5.89e-68 226
Msa0058580 MtrunA17_Chr1g0206821 45.276 254 124 3 1 240 1 253 1.13e-66 222
Msa0058580 MtrunA17_Chr3g0130671 45.872 218 103 4 12 218 33 246 1.31e-57 191
Msa0058580 MtrunA17_Chr3g0130661 43.094 181 97 3 275 452 1 178 9.16e-49 165
Msa0058580 MtrunA17_Chr6g0458931 25.664 452 282 12 5 437 20 436 2.61e-37 142
Msa0058580 MtrunA17_Chr4g0057851 25.629 437 280 12 9 435 1 402 1.97e-35 136
Msa0058580 MtrunA17_Chr1g0146351 58.586 99 40 1 28 126 13 110 8.60e-35 125
Msa0058580 MtrunA17_Chr3g0103261 50.000 120 60 0 12 131 17 136 1.58e-34 126
Msa0058580 MtrunA17_Chr3g0077651 27.394 449 283 10 17 452 51 469 2.06e-34 134
Msa0058580 MtrunA17_Chr1g0184721 24.390 451 303 11 11 451 15 437 4.25e-34 132
Msa0058580 MtrunA17_Chr2g0331721 25.837 418 254 12 17 416 46 425 1.25e-32 129
Msa0058580 MtrunA17_Chr8g0376991 24.945 457 280 14 17 452 22 436 2.86e-32 127
Msa0058580 MtrunA17_Chr1g0206841 58.242 91 38 0 9 99 12 102 7.30e-31 114
Msa0058580 MtrunA17_Chr5g0422741 26.353 425 267 13 5 416 12 403 1.67e-29 119
Msa0058580 MtrunA17_Chr1g0198541 25.612 449 291 10 14 451 20 436 7.14e-29 117
Msa0058580 MtrunA17_Chr2g0328081 25.266 376 239 11 10 374 6 350 1.17e-28 117
Msa0058580 MtrunA17_Chr6g0459011 26.812 414 254 11 34 435 1 377 2.70e-28 115
Msa0058580 MtrunA17_Chr1g0206861 57.778 90 38 0 10 99 13 102 2.93e-28 109
Msa0058580 MtrunA17_Chr6g0459021 26.646 319 211 8 17 326 33 337 1.38e-27 114
Msa0058580 MtrunA17_Chr7g0230011 27.414 321 206 8 17 326 29 333 2.42e-27 113
Msa0058580 MtrunA17_Chr6g0458921 25.799 438 275 13 9 431 1 403 4.31e-27 112
Msa0058580 MtrunA17_Chr3g0122921 27.950 322 203 10 17 326 32 336 1.20e-26 111
Msa0058580 MtrunA17_Chr6g0459031 25.330 379 238 12 10 374 3 350 2.51e-26 110
Msa0058580 MtrunA17_Chr1g0198531 25.962 416 268 10 10 416 17 401 4.00e-26 110
Msa0058580 MtrunA17_Chr6g0459001 27.157 313 199 9 16 316 20 315 2.85e-24 105
Msa0058580 MtrunA17_Chr8g0387941 23.861 461 303 13 10 451 16 447 2.53e-23 102
Msa0058580 MtrunA17_Chr4g0027241 24.213 413 259 14 10 400 28 408 3.99e-20 92.4
Msa0058580 MtrunA17_Chr4g0038711 24.336 452 286 14 19 444 71 492 1.61e-18 87.8
Msa0058580 MtrunA17_Chr3g0143701 23.144 458 288 14 10 438 73 495 2.42e-18 87.4
Msa0058580 MtrunA17_Chr1g0198081 24.222 450 275 20 29 452 70 479 1.88e-16 81.6
Msa0058580 MtrunA17_Chr5g0406331 24.078 461 290 16 19 454 87 512 5.83e-13 70.9
Msa0058580 MtrunA17_Chr5g0436281 21.739 414 284 10 46 452 1 381 9.25e-13 69.7
Msa0058580 MtrunA17_Chr5g0406351 23.333 450 284 15 18 441 107 521 1.22e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058580 AT1G10010.2 52.097 453 202 4 12 451 22 472 1.33e-170 488
Msa0058580 AT1G10010.1 52.097 453 202 4 12 451 21 471 1.84e-170 488
Msa0058580 AT1G58360.1 51.656 453 204 4 12 451 30 480 1.06e-168 483
Msa0058580 AT5G49630.1 49.780 454 213 5 12 451 26 478 5.07e-159 459
Msa0058580 AT1G77380.1 48.786 453 216 5 12 451 23 472 2.30e-152 441
Msa0058580 AT5G63850.1 46.035 454 228 5 12 451 12 462 5.36e-146 425
Msa0058580 AT5G09220.1 45.154 454 232 5 12 451 39 489 1.95e-144 422
Msa0058580 AT1G44100.1 45.197 458 231 5 12 451 21 476 4.57e-143 418
Msa0058580 AT5G23810.1 44.159 428 216 8 11 420 18 440 1.18e-116 350
Msa0058580 AT5G23810.2 45.482 332 161 7 11 327 18 344 7.97e-89 275
Msa0058580 AT5G23810.4 44.444 243 117 6 11 240 18 255 6.37e-58 192
Msa0058580 AT5G23810.5 49.474 190 83 4 11 187 18 207 2.65e-52 176
Msa0058580 AT5G23810.3 49.474 190 83 4 11 187 18 207 2.65e-52 176
Msa0058580 AT5G40780.1 28.637 433 260 14 17 437 32 427 5.60e-37 141
Msa0058580 AT1G48640.1 27.766 461 277 15 10 453 30 451 2.14e-36 139
Msa0058580 AT5G40780.3 28.846 416 247 14 34 437 1 379 1.28e-33 130
Msa0058580 AT5G40780.2 28.846 416 247 14 34 437 1 379 1.28e-33 130
Msa0058580 AT1G24400.1 26.667 450 281 13 17 452 27 441 1.68e-31 125
Msa0058580 AT1G71680.1 26.726 449 283 11 17 452 33 448 1.28e-28 117
Msa0058580 AT3G01760.1 23.991 446 291 11 17 447 30 442 2.91e-28 117
Msa0058580 AT1G71680.2 29.063 320 203 8 17 326 33 338 1.29e-27 113
Msa0058580 AT1G67640.1 25.778 450 285 13 17 452 27 441 1.64e-27 114
Msa0058580 AT1G61270.1 23.060 464 307 12 3 449 12 442 7.05e-27 112
Msa0058580 AT1G25530.1 25.110 454 297 12 10 452 19 440 2.53e-26 111
Msa0058580 AT5G41800.1 23.226 465 308 12 8 452 12 447 9.42e-23 100
Msa0058580 AT1G08230.2 25.380 461 280 16 18 452 27 449 8.06e-22 98.2
Msa0058580 AT3G55740.1 23.445 418 272 13 46 452 57 437 5.66e-18 86.3
Msa0058580 AT3G55740.2 23.445 418 272 13 46 452 1 381 8.12e-18 85.5
Msa0058580 AT3G55740.3 23.445 418 272 13 46 452 1 381 8.12e-18 85.5
Msa0058580 AT2G39890.2 21.498 414 285 12 46 452 60 440 6.00e-15 77.0
Msa0058580 AT2G39890.1 21.498 414 285 12 46 452 60 440 6.00e-15 77.0
Msa0058580 AT1G08230.4 27.329 322 193 11 144 452 37 330 7.33e-15 75.9
Msa0058580 AT1G08230.6 27.329 322 193 11 144 452 37 330 7.33e-15 75.9
Msa0058580 AT1G08230.5 27.329 322 193 11 144 452 37 330 7.33e-15 75.9
Msa0058580 AT1G08230.3 25.867 375 224 14 95 452 12 349 7.64e-15 76.3
Msa0058580 AT2G39890.3 21.498 414 285 12 46 452 1 381 8.05e-15 76.3
Msa0058580 AT2G36590.1 21.680 369 251 9 46 408 54 390 9.96e-13 70.1

Find 119 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTATTTAGGTTAATT+TGG 0.177654 1_2:+15067529 Msa0058580:CDS
CAATCAAGTTGAACTTATTT+AGG 0.180608 1_2:+15067520 Msa0058580:CDS
TTTATAAATATATGAGAATA+AGG 0.189743 1_2:-15068093 None:intergenic
ATTCTCATATATTTATAAAA+AGG 0.192880 1_2:+15068097 Msa0058580:three_prime_UTR
GTCAATTGTTTCTTATAATA+AGG 0.195354 1_2:-15067915 None:intergenic
GTCTACTTACAAAGGCATTT+TGG 0.203827 1_2:+15066697 Msa0058580:intron
AATCCCTACATGATCGGTTT+TGG 0.237586 1_2:+15066365 Msa0058580:CDS
CTGAGTAAGCCGGTTTATTT+GGG 0.252552 1_2:-15064284 None:intergenic
TCTGAGTAAGCCGGTTTATT+TGG 0.261955 1_2:-15064285 None:intergenic
TGCCTTGGCTATGCTGCTTT+TGG 0.276773 1_2:+15067078 Msa0058580:CDS
AGCATAACCGGAACACAAAT+AGG 0.277840 1_2:+15066747 Msa0058580:CDS
CTGTTGGGAGCAATTGGATT+TGG 0.283088 1_2:+15067621 Msa0058580:CDS
TTCTCTGCAGCAGTTAGTTC+TGG 0.283344 1_2:-15066771 None:intergenic
CCACATGATTGGAGCATATC+AGG 0.303203 1_2:+15067182 Msa0058580:CDS
TGAGCAATATGCATTTGTAT+AGG 0.308548 1_2:-15067663 None:intergenic
TTCTGGCCCTATTTGTGTTC+CGG 0.312048 1_2:-15066754 None:intergenic
ATGAAAAGGGCCAACGTGAT+AGG 0.325683 1_2:+15067018 Msa0058580:CDS
GAGCAATATGCATTTGTATA+GGG 0.353394 1_2:-15067662 None:intergenic
AAGGTACATACCAGTTCTTT+TGG 0.354167 1_2:-15064395 None:intergenic
CAGGGGTGTTGGCTCTAGCA+TGG 0.361926 1_2:+15065370 Msa0058580:CDS
CTAGCTCTGTTGGGAGCAAT+TGG 0.365907 1_2:+15067615 Msa0058580:CDS
TACTGTTATTTACGACATAA+TGG 0.366442 1_2:+15066848 Msa0058580:CDS
CAATAAAATAAATATTTGAT+TGG 0.374722 1_2:+15064178 Msa0058580:five_prime_UTR
TTATAAATATATGAGAATAA+GGG 0.384308 1_2:-15068092 None:intergenic
TCTTTGTATGGTTGTCTCAT+TGG 0.385439 1_2:+15067740 Msa0058580:CDS
CCATGTCAGTTTGTGAAAGT+TGG 0.389481 1_2:-15066417 None:intergenic
TGTAGTAGGGGCAGGGGTGT+TGG 0.391643 1_2:+15065359 Msa0058580:CDS
GTCTTGTAGCTGATTGCTAT+AGG 0.413676 1_2:+15065469 Msa0058580:CDS
ACACTCATGAATGATATAGA+TGG 0.414715 1_2:-15064212 None:intergenic
CAATCAATTTCTAGCTCTGT+TGG 0.414936 1_2:+15067605 Msa0058580:CDS
TCCAAGGGCAACTATCCAAT+AGG 0.418884 1_2:-15067142 None:intergenic
GGGGCATCTACCAGCATAAC+CGG 0.419402 1_2:+15066735 Msa0058580:CDS
ATTGCCGCTATCACCTCGTT+TGG 0.429141 1_2:+15066449 Msa0058580:CDS
CATGTCAGTTTGTGAAAGTT+GGG 0.432632 1_2:-15066416 None:intergenic
TGAAAAGGGCCAACGTGATA+GGG 0.434153 1_2:+15067019 Msa0058580:CDS
CAAGCTGTCAAGAGCTACTT+AGG 0.436812 1_2:+15065534 Msa0058580:CDS
AACAACTACCCCAAATAAAC+CGG 0.440192 1_2:+15064275 Msa0058580:five_prime_UTR
AGGGGTGTTGGCTCTAGCAT+GGG 0.441108 1_2:+15065371 Msa0058580:CDS
CAGAAAATAAACAAATGAAA+AGG 0.441906 1_2:+15067004 Msa0058580:CDS
GGATGCAAAGGTTAGTATAC+TGG 0.447579 1_2:-15065427 None:intergenic
CATATCATAACAGTTGTAGT+AGG 0.450490 1_2:+15065345 Msa0058580:CDS
AATCAATTTCTAGCTCTGTT+GGG 0.451943 1_2:+15067606 Msa0058580:CDS
TACCAGCTATCCATCCTAGT+TGG 0.452399 1_2:-15065401 None:intergenic
GGTTATGTATTCATTGCAGT+TGG 0.455037 1_2:+15066470 Msa0058580:CDS
TGCATAGTAATCCACATGAT+TGG 0.455742 1_2:+15067171 Msa0058580:CDS
GCATAACCGGAACACAAATA+GGG 0.463229 1_2:+15066748 Msa0058580:CDS
TACAAAGACAATTCAAAAGT+TGG 0.463664 1_2:-15067725 None:intergenic
GTGGCGTGTTTGCACTTCAA+TGG 0.465802 1_2:+15066797 Msa0058580:CDS
GATGGTAAAGCCAAAAGAAC+TGG 0.469877 1_2:+15064385 Msa0058580:CDS
TTCCTACTATGTAGTTGCCT+TGG 0.474242 1_2:+15067063 Msa0058580:CDS
GTAGTATATATGTCGAGGTT+AGG 0.480222 1_2:+15068050 Msa0058580:three_prime_UTR
ATAGGGAAGAAGACAACTAA+TGG 0.480258 1_2:-15067645 None:intergenic
GTTGGCTCTAGCATGGGCCA+TGG 0.482757 1_2:+15065377 Msa0058580:CDS
AGAAAATAAACAAATGAAAA+GGG 0.483828 1_2:+15067005 Msa0058580:CDS
TATTTGTGTTCCGGTTATGC+TGG 0.485037 1_2:-15066745 None:intergenic
TATTACACAAACTCTAATCA+TGG 0.488415 1_2:+15064351 Msa0058580:CDS
ACCAGCTATCCATCCTAGTT+GGG 0.489518 1_2:-15065400 None:intergenic
TTTGGCTAAGAGCAGGAAAA+GGG 0.492627 1_2:+15066715 Msa0058580:CDS
CCAAGGGCAACTATCCAATA+GGG 0.493750 1_2:-15067141 None:intergenic
CCCTATTGGATAGTTGCCCT+TGG 0.494101 1_2:+15067141 Msa0058580:CDS
ATAACAGTTGTAGTAGGGGC+AGG 0.494302 1_2:+15065351 Msa0058580:CDS
TGGCGTGTTTGCACTTCAAT+GGG 0.506484 1_2:+15066798 Msa0058580:CDS
TGGCATTGCCATGGCAAGAA+TGG 0.508311 1_2:-15067577 None:intergenic
GGAACGATGCAAGTGATTTG+TGG 0.514681 1_2:+15065954 Msa0058580:CDS
TCTTATAATCCCTACATGAT+CGG 0.515618 1_2:+15066359 Msa0058580:CDS
ATATCATAACAGTTGTAGTA+GGG 0.519670 1_2:+15065346 Msa0058580:CDS
TTGTTTCTTATAATAAGGAC+CGG 0.519804 1_2:-15067910 None:intergenic
TTTAAGTTTACTACTCCCTC+CGG 0.523711 1_2:+15067891 Msa0058580:intron
GACTATTCATTTAACGTGCG+TGG 0.527695 1_2:+15067492 Msa0058580:CDS
AGCCAAGGCAACTACATAGT+AGG 0.529056 1_2:-15067065 None:intergenic
ATCCCAAAACCGATCATGTA+GGG 0.529885 1_2:-15066368 None:intergenic
AGATAACTAAATGATATAAG+TGG 0.534402 1_2:+15064305 Msa0058580:five_prime_UTR
GCATGGGCCATGGCCCAACT+AGG 0.536744 1_2:+15065387 Msa0058580:CDS
GGGCCATGGCCCAACTAGGA+TGG 0.542624 1_2:+15065391 Msa0058580:CDS
CCAACTTTCACAAACTGACA+TGG 0.543853 1_2:+15066417 Msa0058580:CDS
AACAGTTGTAGTAGGGGCAG+GGG 0.543889 1_2:+15065353 Msa0058580:CDS
ATTTAGTTATCTGAGTAAGC+CGG 0.551482 1_2:-15064294 None:intergenic
TATCCATCCTAGTTGGGCCA+TGG 0.551644 1_2:-15065394 None:intergenic
AAACGAGGTGATAGCGGCAA+TGG 0.553749 1_2:-15066447 None:intergenic
GAAAATAGAGATGGATGCAA+AGG 0.554293 1_2:-15065439 None:intergenic
AGATAAGTACACTAAGACAA+AGG 0.554929 1_2:-15066493 None:intergenic
GCCCAACTAGGATGGATAGC+TGG 0.559262 1_2:+15065399 Msa0058580:CDS
AGGTTTCCAGACCCAATCAC+TGG 0.561683 1_2:+15065489 Msa0058580:CDS
ACTTATTTAGGTTAATTTGG+AGG 0.566475 1_2:+15067532 Msa0058580:CDS
TAACAGTTGTAGTAGGGGCA+GGG 0.570383 1_2:+15065352 Msa0058580:CDS
ACTGTAAGTGAAAATAGAGA+TGG 0.570667 1_2:-15065448 None:intergenic
TTCTTATAATAAGGACCGGA+GGG 0.570866 1_2:+15068026 Msa0058580:three_prime_UTR
CATTTCTTTAGAGATAGAGT+TGG 0.570900 1_2:+15068144 Msa0058580:three_prime_UTR
CACCAAAAGCAGCATAGCCA+AGG 0.570972 1_2:-15067080 None:intergenic
GACATATATACTACTCCCTC+CGG 0.571546 1_2:-15068041 None:intergenic
TATCCCAAAACCGATCATGT+AGG 0.575682 1_2:-15066369 None:intergenic
TTACTATGCATACTTCTCCA+AGG 0.582950 1_2:-15067158 None:intergenic
TTCTTATAATAAGGACCGGA+GGG 0.584722 1_2:-15067906 None:intergenic
AAGCTTGCTGGGATAACAGT+GGG 0.590727 1_2:+15065993 Msa0058580:CDS
GAAAAGGGCCAACGTGATAG+GGG 0.592889 1_2:+15067020 Msa0058580:CDS
TACTATGCATACTTCTCCAA+GGG 0.602300 1_2:-15067157 None:intergenic
CCTGATATGCTCCAATCATG+TGG 0.605077 1_2:-15067182 None:intergenic
GCAATATTGCAGGGAATGTG+TGG 0.613247 1_2:+15065310 Msa0058580:intron
TACCCGTGTTATCATTGAGG+TGG 0.616935 1_2:+15067694 Msa0058580:CDS
ACTAGCAACCATTCTTGCCA+TGG 0.618912 1_2:+15067569 Msa0058580:CDS
ACACCACCTCAATGATAACA+CGG 0.622743 1_2:-15067697 None:intergenic
TAACTGCTGCAGAGAAAGTG+TGG 0.629057 1_2:+15066778 Msa0058580:CDS
GCATACCCGTGTTATCATTG+AGG 0.631382 1_2:+15067691 Msa0058580:CDS
ATCATGGAACAAGATGATGA+TGG 0.632907 1_2:+15064367 Msa0058580:CDS
TCATGAATGATATAGATGGA+TGG 0.638075 1_2:-15064208 None:intergenic
TATCATAACAGTTGTAGTAG+GGG 0.641841 1_2:+15065347 Msa0058580:CDS
TTGGCTAAGAGCAGGAAAAG+GGG 0.645369 1_2:+15066716 Msa0058580:CDS
TTTCTTATAATAAGGACCGG+AGG 0.646407 1_2:+15068025 Msa0058580:three_prime_UTR
TGTTGATACCCCTATCACGT+TGG 0.649196 1_2:-15067028 None:intergenic
ACAATAGCATCTTTGTAACA+AGG 0.649686 1_2:+15067830 Msa0058580:exon
ATAACCAAACGAGGTGATAG+CGG 0.652735 1_2:-15066453 None:intergenic
TTTCTTATAATAAGGACCGG+AGG 0.654187 1_2:-15067907 None:intergenic
AGGGAGTAGTATATATGTCG+AGG 0.655486 1_2:+15068045 Msa0058580:three_prime_UTR
CACCACCTCAATGATAACAC+GGG 0.666427 1_2:-15067696 None:intergenic
AAATGGGTGCTAATATCGCG+TGG 0.670178 1_2:+15067445 Msa0058580:CDS
ATGAATTGAAGCAACTACAG+CGG 0.673797 1_2:-15067763 None:intergenic
AAAGCTTGCTGGGATAACAG+TGG 0.698440 1_2:+15065992 Msa0058580:CDS
TGAGTAAGCCGGTTTATTTG+GGG 0.701635 1_2:-15064283 None:intergenic
AATGAATACATAACCAAACG+AGG 0.738565 1_2:-15066462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAATAAATATTTGAT+TGG + chr1_2:15064178-15064197 Msa0058580:five_prime_UTR 10.0%
!! TAGTATATTTCATAATTATA+TGG + chr1_2:15064489-15064508 Msa0058580:intron 10.0%
!!! TTTTGTTTTGTTTTTTTTTT+GGG - chr1_2:15064666-15064685 None:intergenic 10.0%
!!! ATTTTGTTTTGTTTTTTTTT+TGG - chr1_2:15064667-15064686 None:intergenic 10.0%
!! TTAAAAAACAAAAAATTAGA+TGG - chr1_2:15065025-15065044 None:intergenic 10.0%
!!! ATCTAATTTTTTGTTTTTTA+AGG + chr1_2:15065024-15065043 Msa0058580:intron 10.0%
!!! TTATATTTCTATTTGATAAT+AGG + chr1_2:15065930-15065949 Msa0058580:intron 10.0%
!! AATACAAAAAAATAAAATCA+TGG + chr1_2:15066149-15066168 Msa0058580:intron 10.0%
!! TTATAAATATATGAGAATAA+GGG - chr1_2:15068095-15068114 None:intergenic 10.0%
!! TTTATAAATATATGAGAATA+AGG - chr1_2:15068096-15068115 None:intergenic 10.0%
!! ATTCTCATATATTTATAAAA+AGG + chr1_2:15068097-15068116 Msa0058580:three_prime_UTR 10.0%
!! TTCTCATATATTTATAAAAA+GGG + chr1_2:15068098-15068117 Msa0058580:three_prime_UTR 10.0%
!!! AAAAATTGATTGATTTTCTT+GGG + chr1_2:15064622-15064641 Msa0058580:intron 15.0%
!! TTTCATTTATACTTATTTAG+AGG - chr1_2:15065263-15065282 None:intergenic 15.0%
!! ATCATGTTATGATTAATATT+TGG + chr1_2:15065284-15065303 Msa0058580:intron 15.0%
!!! TGTATCATATATTTAAAACA+GGG - chr1_2:15065607-15065626 None:intergenic 15.0%
!!! ATGTATCATATATTTAAAAC+AGG - chr1_2:15065608-15065627 None:intergenic 15.0%
!!! ATTCCTTATAGTTTTAAATA+TGG + chr1_2:15065870-15065889 Msa0058580:intron 15.0%
!!! TTCCTTATAGTTTTAAATAT+GGG + chr1_2:15065871-15065890 Msa0058580:intron 15.0%
!! AGAAAATAAACAAATGAAAA+GGG + chr1_2:15067005-15067024 Msa0058580:CDS 15.0%
!!! TTGATTTATGAATTTTGAAT+CGG - chr1_2:15067472-15067491 None:intergenic 15.0%
!! AGATAACTAAATGATATAAG+TGG + chr1_2:15064305-15064324 Msa0058580:five_prime_UTR 20.0%
!! AATTAAGATAGAAAGGAATA+AGG - chr1_2:15064417-15064436 None:intergenic 20.0%
!! ATCAAACATGTTATTGATAT+TGG - chr1_2:15064591-15064610 None:intergenic 20.0%
!!! AAATCAATCAATTTTTGTCA+CGG - chr1_2:15064618-15064637 None:intergenic 20.0%
!!! CAAAAATTGATTGATTTTCT+TGG + chr1_2:15064621-15064640 Msa0058580:intron 20.0%
!!! TTTTTTTTTTGGGATAACAA+GGG - chr1_2:15064656-15064675 None:intergenic 20.0%
!! CATTGAACAATATTCAATAA+TGG + chr1_2:15064766-15064785 Msa0058580:intron 20.0%
!! TTCAATAATGGTTAAACATT+TGG + chr1_2:15064778-15064797 Msa0058580:intron 20.0%
!!! ATACAGTAGTTATTTTATCA+CGG - chr1_2:15064893-15064912 None:intergenic 20.0%
!!! ATAGTTGCTTTTAAAACTTT+CGG - chr1_2:15064982-15065001 None:intergenic 20.0%
!! AATATTCTGTTATTAAAGGA+GGG - chr1_2:15065853-15065872 None:intergenic 20.0%
!! AAGGAATATTCTGTTATTAA+AGG - chr1_2:15065857-15065876 None:intergenic 20.0%
!!! AACCCATATTTAAAACTATA+AGG - chr1_2:15065876-15065895 None:intergenic 20.0%
!!! TATTTCTATTTGATAATAGG+TGG + chr1_2:15065933-15065952 Msa0058580:intron 20.0%
!! AAATCATGGTTAGATTAATT+TGG + chr1_2:15066163-15066182 Msa0058580:intron 20.0%
!! AGAAAAGTTTACAATAAGAT+TGG + chr1_2:15066628-15066647 Msa0058580:intron 20.0%
!! TTATATATGTCTACTTACAA+AGG + chr1_2:15066689-15066708 Msa0058580:intron 20.0%
!! AATGGAAAAATCAAATACAA+GGG - chr1_2:15066951-15066970 None:intergenic 20.0%
!! TAATGGAAAAATCAAATACA+AGG - chr1_2:15066952-15066971 None:intergenic 20.0%
!!! ATTTTTCCATTATTTTGTCT+AGG + chr1_2:15066960-15066979 Msa0058580:intron 20.0%
!!! CTTTTCATTTGTTTATTTTC+TGG - chr1_2:15067006-15067025 None:intergenic 20.0%
!! CAGAAAATAAACAAATGAAA+AGG + chr1_2:15067004-15067023 Msa0058580:CDS 20.0%
!! AAATATGATGATATGACAAA+AGG - chr1_2:15067273-15067292 None:intergenic 20.0%
!!! TAATATTTTATTACAGGTCA+TGG + chr1_2:15067398-15067417 Msa0058580:intron 20.0%
!!! TGATTTATGAATTTTGAATC+GGG - chr1_2:15067471-15067490 None:intergenic 20.0%
!!! TGAACTTATTTAGGTTAATT+TGG + chr1_2:15067529-15067548 Msa0058580:CDS 20.0%
!!! GTCAATTGTTTCTTATAATA+AGG - chr1_2:15067918-15067937 None:intergenic 20.0%
!!! TAAGAAACAATTGACTTTTT+TGG + chr1_2:15067923-15067942 Msa0058580:three_prime_UTR 20.0%
!!! GTCAACTTTTTCTTATAATA+AGG + chr1_2:15068017-15068036 Msa0058580:three_prime_UTR 20.0%
! TATTACACAAACTCTAATCA+TGG + chr1_2:15064351-15064370 Msa0058580:CDS 25.0%
! TTCAGAGAATTAAGATAGAA+AGG - chr1_2:15064424-15064443 None:intergenic 25.0%
! AACATGTTATTGATATTGGT+GGG - chr1_2:15064587-15064606 None:intergenic 25.0%
! AAACATGTTATTGATATTGG+TGG - chr1_2:15064588-15064607 None:intergenic 25.0%
!!! TTTTTTTTTGGGATAACAAG+GGG - chr1_2:15064655-15064674 None:intergenic 25.0%
!!! GTTTTTTTTTTGGGATAACA+AGG - chr1_2:15064657-15064676 None:intergenic 25.0%
!!! TAGTTGCTTTTAAAACTTTC+GGG - chr1_2:15064981-15065000 None:intergenic 25.0%
!! TGTTACTGTGTAAATTTTCA+TGG + chr1_2:15065067-15065086 Msa0058580:intron 25.0%
! ATCTTAAGGTTTCTACAAAT+AGG + chr1_2:15065117-15065136 Msa0058580:intron 25.0%
! ATATCATAACAGTTGTAGTA+GGG + chr1_2:15065346-15065365 Msa0058580:CDS 25.0%
! ATCAATTCTTGAAGAGTAAA+GGG - chr1_2:15065659-15065678 None:intergenic 25.0%
! ATATTCTGTTATTAAAGGAG+GGG - chr1_2:15065852-15065871 None:intergenic 25.0%
! GAATATTCTGTTATTAAAGG+AGG - chr1_2:15065854-15065873 None:intergenic 25.0%
!!! ATTTGTGGATTGATTTTGTA+TGG + chr1_2:15065969-15065988 Msa0058580:CDS 25.0%
!! GTTAGATTAATTTGGTAAGT+AGG + chr1_2:15066171-15066190 Msa0058580:intron 25.0%
!! TCATATTACACTTGTTAGTA+AGG - chr1_2:15066278-15066297 None:intergenic 25.0%
!! TACTGTTATTTACGACATAA+TGG + chr1_2:15066848-15066867 Msa0058580:CDS 25.0%
! ATGTATCCTAGACAAAATAA+TGG - chr1_2:15066969-15066988 None:intergenic 25.0%
!!! TTCATTTGTTTATTTTCTGG+TGG - chr1_2:15067003-15067022 None:intergenic 25.0%
! AATCCAAAAAAAATGTTTCC+TGG - chr1_2:15067114-15067133 None:intergenic 25.0%
! GGATACTAGTAATTTAGTAA+TGG - chr1_2:15067252-15067271 None:intergenic 25.0%
!!! CAATCAAGTTGAACTTATTT+AGG + chr1_2:15067520-15067539 Msa0058580:CDS 25.0%
!! ACTTATTTAGGTTAATTTGG+AGG + chr1_2:15067532-15067551 Msa0058580:CDS 25.0%
! GCTAGAAATTGATTGAAAAA+TGG - chr1_2:15067600-15067619 None:intergenic 25.0%
! TACAAAGACAATTCAAAAGT+TGG - chr1_2:15067728-15067747 None:intergenic 25.0%
!! ACTTTTGAATTGTCTTTGTA+TGG + chr1_2:15067728-15067747 Msa0058580:CDS 25.0%
!! TTGTTTCTTATAATAAGGAC+CGG - chr1_2:15067913-15067932 None:intergenic 25.0%
!! CTTTTTCTTATAATAAGGAC+CGG + chr1_2:15068022-15068041 Msa0058580:three_prime_UTR 25.0%
TCATGAATGATATAGATGGA+TGG - chr1_2:15064211-15064230 None:intergenic 30.0%
ACACTCATGAATGATATAGA+TGG - chr1_2:15064215-15064234 None:intergenic 30.0%
!!! TCTTTCTCTCCTATCTTTTT+TGG + chr1_2:15064240-15064259 Msa0058580:five_prime_UTR 30.0%
ATTTAGTTATCTGAGTAAGC+CGG - chr1_2:15064297-15064316 None:intergenic 30.0%
!!! TTTTTTTTGGGATAACAAGG+GGG - chr1_2:15064654-15064673 None:intergenic 30.0%
TGATTTCGTAAGCTTATACT+TGG + chr1_2:15064686-15064705 Msa0058580:intron 30.0%
! ACTTTTGTTGGGAAATTTGT+TGG - chr1_2:15064864-15064883 None:intergenic 30.0%
! AAAACTTTCGGGTATTTGTA+TGG - chr1_2:15064970-15064989 None:intergenic 30.0%
AAACCTTAAGATGTTTCCTA+AGG - chr1_2:15065109-15065128 None:intergenic 30.0%
CAATCCTGTGAGAAATAAAT+TGG + chr1_2:15065167-15065186 Msa0058580:intron 30.0%
!! TGTTCTAAGAGCACATATTA+AGG - chr1_2:15065227-15065246 None:intergenic 30.0%
CATATCATAACAGTTGTAGT+AGG + chr1_2:15065345-15065364 Msa0058580:CDS 30.0%
TATCATAACAGTTGTAGTAG+GGG + chr1_2:15065347-15065366 Msa0058580:CDS 30.0%
ACTGTAAGTGAAAATAGAGA+TGG - chr1_2:15065451-15065470 None:intergenic 30.0%
! AATTTCTTTTGCCAGTGATT+GGG - chr1_2:15065503-15065522 None:intergenic 30.0%
! TAATTTCTTTTGCCAGTGAT+TGG - chr1_2:15065504-15065523 None:intergenic 30.0%
!!! TGATACATATTTTAGCAACG+AGG + chr1_2:15065620-15065639 Msa0058580:intron 30.0%
!!! GATACATATTTTAGCAACGA+GGG + chr1_2:15065621-15065640 Msa0058580:intron 30.0%
TCAATTCTTGAAGAGTAAAG+GGG - chr1_2:15065658-15065677 None:intergenic 30.0%
CATCAATTCTTGAAGAGTAA+AGG - chr1_2:15065660-15065679 None:intergenic 30.0%
CTTTACTCTTCAAGAATTGA+TGG + chr1_2:15065658-15065677 Msa0058580:intron 30.0%
TCTTATAATCCCTACATGAT+CGG + chr1_2:15066359-15066378 Msa0058580:CDS 30.0%
AATGAATACATAACCAAACG+AGG - chr1_2:15066465-15066484 None:intergenic 30.0%
AGATAAGTACACTAAGACAA+AGG - chr1_2:15066496-15066515 None:intergenic 30.0%
AATCAACTACACCATAAAGT+TGG - chr1_2:15066588-15066607 None:intergenic 30.0%
!!! ACACCAGGAAACATTTTTTT+TGG + chr1_2:15067108-15067127 Msa0058580:CDS 30.0%
ATGGTTAGATTAAAGTTAGC+TGG - chr1_2:15067233-15067252 None:intergenic 30.0%
!! AATCAATTTCTAGCTCTGTT+GGG + chr1_2:15067606-15067625 Msa0058580:CDS 30.0%
GAGCAATATGCATTTGTATA+GGG - chr1_2:15067665-15067684 None:intergenic 30.0%
TGAGCAATATGCATTTGTAT+AGG - chr1_2:15067666-15067685 None:intergenic 30.0%
ACAATAGCATCTTTGTAACA+AGG + chr1_2:15067830-15067849 Msa0058580:exon 30.0%
! CATTTCTTTAGAGATAGAGT+TGG + chr1_2:15068144-15068163 Msa0058580:three_prime_UTR 30.0%
!! TATTTGGGGTAGTTGTTTTC+CGG - chr1_2:15064272-15064291 None:intergenic 35.0%
AACAACTACCCCAAATAAAC+CGG + chr1_2:15064275-15064294 Msa0058580:five_prime_UTR 35.0%
ATCATGGAACAAGATGATGA+TGG + chr1_2:15064367-15064386 Msa0058580:CDS 35.0%
! AAGGTACATACCAGTTCTTT+TGG - chr1_2:15064398-15064417 None:intergenic 35.0%
!! TGATTGATTTTCTTGGGCTT+AGG + chr1_2:15064628-15064647 Msa0058580:intron 35.0%
TTGGACACGTAACAATTTGT+AGG + chr1_2:15064797-15064816 Msa0058580:intron 35.0%
! CACGGTAACTAACTTTTGTT+GGG - chr1_2:15064875-15064894 None:intergenic 35.0%
! TCACGGTAACTAACTTTTGT+TGG - chr1_2:15064876-15064895 None:intergenic 35.0%
!! ATAGCTGAGTTTCTTTTTCG+TGG + chr1_2:15064917-15064936 Msa0058580:intron 35.0%
!!! TGGAATTCTGGCTTCAATTT+TGG - chr1_2:15064950-15064969 None:intergenic 35.0%
CAGTAACACACATCATTAGA+CGG - chr1_2:15065055-15065074 None:intergenic 35.0%
TCATGCTAACTTATGTCCTT+AGG + chr1_2:15065090-15065109 Msa0058580:intron 35.0%
TGTCCTTAGGAAACATCTTA+AGG + chr1_2:15065103-15065122 Msa0058580:intron 35.0%
! TGTGCCAATTTATTTCTCAC+AGG - chr1_2:15065174-15065193 None:intergenic 35.0%
!! TATTTGGTGTGCAATATTGC+AGG + chr1_2:15065300-15065319 Msa0058580:intron 35.0%
!! ATTTGGTGTGCAATATTGCA+GGG + chr1_2:15065301-15065320 Msa0058580:intron 35.0%
GAAAATAGAGATGGATGCAA+AGG - chr1_2:15065442-15065461 None:intergenic 35.0%
TAAAACAGGGCAAAATTCAG+TGG - chr1_2:15065594-15065613 None:intergenic 35.0%
TTATTAAAGGAGGGGAAAAC+TGG - chr1_2:15065844-15065863 None:intergenic 35.0%
! ATTTTGTATGGAAAGCTTGC+TGG + chr1_2:15065981-15066000 Msa0058580:CDS 35.0%
!! TTTTGTATGGAAAGCTTGCT+GGG + chr1_2:15065982-15066001 Msa0058580:CDS 35.0%
GTTGTTTGCATCCATAGAAA+AGG + chr1_2:15066314-15066333 Msa0058580:intron 35.0%
CATGTCAGTTTGTGAAAGTT+GGG - chr1_2:15066419-15066438 None:intergenic 35.0%
GGTTATGTATTCATTGCAGT+TGG + chr1_2:15066470-15066489 Msa0058580:CDS 35.0%
TGTCTTAGTGTACTTATCTC+AGG + chr1_2:15066497-15066516 Msa0058580:intron 35.0%
ATCCTCTACAACCAACTTTA+TGG + chr1_2:15066574-15066593 Msa0058580:intron 35.0%
GATCATAAAATCGATCGTAG+AGG + chr1_2:15066650-15066669 Msa0058580:intron 35.0%
!!! GTCTACTTACAAAGGCATTT+TGG + chr1_2:15066697-15066716 Msa0058580:intron 35.0%
GCAATTATGCAGTAACAAGT+TGG + chr1_2:15066910-15066929 Msa0058580:intron 35.0%
AAAAAATGTTTCCTGGTGTG+TGG - chr1_2:15067107-15067126 None:intergenic 35.0%
! TTGGATTTTATGAGCCCTAT+TGG + chr1_2:15067127-15067146 Msa0058580:CDS 35.0%
TACTATGCATACTTCTCCAA+GGG - chr1_2:15067160-15067179 None:intergenic 35.0%
TTACTATGCATACTTCTCCA+AGG - chr1_2:15067161-15067180 None:intergenic 35.0%
TGCATAGTAATCCACATGAT+TGG + chr1_2:15067171-15067190 Msa0058580:CDS 35.0%
ATTTCAACGACGCGAAAAAA+TGG - chr1_2:15067429-15067448 None:intergenic 35.0%
!!! ATTTTTTCGCGTCGTTGAAA+TGG + chr1_2:15067428-15067447 Msa0058580:CDS 35.0%
!!! TTTTTTCGCGTCGTTGAAAT+GGG + chr1_2:15067429-15067448 Msa0058580:CDS 35.0%
ATTGAAAAATGGCATTGCCA+TGG - chr1_2:15067589-15067608 None:intergenic 35.0%
!! CAATCAATTTCTAGCTCTGT+TGG + chr1_2:15067605-15067624 Msa0058580:CDS 35.0%
ATAGGGAAGAAGACAACTAA+TGG - chr1_2:15067648-15067667 None:intergenic 35.0%
TCTTTGTATGGTTGTCTCAT+TGG + chr1_2:15067740-15067759 Msa0058580:CDS 35.0%
ATGAATTGAAGCAACTACAG+CGG - chr1_2:15067766-15067785 None:intergenic 35.0%
! TTTAAGTTTACTACTCCCTC+CGG + chr1_2:15067891-15067910 Msa0058580:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG - chr1_2:15068026-15068045 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG - chr1_2:15068025-15068044 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG + chr1_2:15068025-15068044 Msa0058580:three_prime_UTR 35.0%
TTCTTATAATAAGGACCGGA+GGG + chr1_2:15068026-15068045 Msa0058580:three_prime_UTR 35.0%
GTAGTATATATGTCGAGGTT+AGG + chr1_2:15068050-15068069 Msa0058580:three_prime_UTR 35.0%
!!! CTATCTTTTTTGGCAGTGAC+CGG + chr1_2:15064250-15064269 Msa0058580:five_prime_UTR 40.0%
! TGAGTAAGCCGGTTTATTTG+GGG - chr1_2:15064286-15064305 None:intergenic 40.0%
! CTGAGTAAGCCGGTTTATTT+GGG - chr1_2:15064287-15064306 None:intergenic 40.0%
! TCTGAGTAAGCCGGTTTATT+TGG - chr1_2:15064288-15064307 None:intergenic 40.0%
GATGGTAAAGCCAAAAGAAC+TGG + chr1_2:15064385-15064404 Msa0058580:CDS 40.0%
CGGGTATTTGTATGGAATTC+TGG - chr1_2:15064962-15064981 None:intergenic 40.0%
GGATGCAAAGGTTAGTATAC+TGG - chr1_2:15065430-15065449 None:intergenic 40.0%
GTCTTGTAGCTGATTGCTAT+AGG + chr1_2:15065469-15065488 Msa0058580:CDS 40.0%
! CAGCTTCAAGTCCTTTTCTA+TGG - chr1_2:15066328-15066347 None:intergenic 40.0%
!! AATCCCTACATGATCGGTTT+TGG + chr1_2:15066365-15066384 Msa0058580:CDS 40.0%
!! ATCCCTACATGATCGGTTTT+GGG + chr1_2:15066366-15066385 Msa0058580:CDS 40.0%
ATCCCAAAACCGATCATGTA+GGG - chr1_2:15066371-15066390 None:intergenic 40.0%
TATCCCAAAACCGATCATGT+AGG - chr1_2:15066372-15066391 None:intergenic 40.0%
CCATGTCAGTTTGTGAAAGT+TGG - chr1_2:15066420-15066439 None:intergenic 40.0%
CCAACTTTCACAAACTGACA+TGG + chr1_2:15066417-15066436 Msa0058580:CDS 40.0%
ATAACCAAACGAGGTGATAG+CGG - chr1_2:15066456-15066475 None:intergenic 40.0%
! CACCATAAAGTTGGTTGTAG+AGG - chr1_2:15066579-15066598 None:intergenic 40.0%
!! TTTTGGCTAAGAGCAGGAAA+AGG + chr1_2:15066714-15066733 Msa0058580:CDS 40.0%
TTTGGCTAAGAGCAGGAAAA+GGG + chr1_2:15066715-15066734 Msa0058580:CDS 40.0%
TATTTGTGTTCCGGTTATGC+TGG - chr1_2:15066748-15066767 None:intergenic 40.0%
AGCATAACCGGAACACAAAT+AGG + chr1_2:15066747-15066766 Msa0058580:CDS 40.0%
GCATAACCGGAACACAAATA+GGG + chr1_2:15066748-15066767 Msa0058580:CDS 40.0%
TTCCTACTATGTAGTTGCCT+TGG + chr1_2:15067063-15067082 Msa0058580:CDS 40.0%
ATGATTGGAGCATATCAGGT+TGG + chr1_2:15067186-15067205 Msa0058580:intron 40.0%
GACTATTCATTTAACGTGCG+TGG + chr1_2:15067492-15067511 Msa0058580:CDS 40.0%
ACACCACCTCAATGATAACA+CGG - chr1_2:15067700-15067719 None:intergenic 40.0%
GACATATATACTACTCCCTC+CGG - chr1_2:15068044-15068063 None:intergenic 40.0%
AGGGAGTAGTATATATGTCG+AGG + chr1_2:15068045-15068064 Msa0058580:three_prime_UTR 40.0%
CGGTCACTGCCAAAAAAGAT+AGG - chr1_2:15064252-15064271 None:intergenic 45.0%
CTTTCTTCATACGCAAGCGT+TGG - chr1_2:15064831-15064850 None:intergenic 45.0%
GCAATATTGCAGGGAATGTG+TGG + chr1_2:15065310-15065329 Msa0058580:intron 45.0%
ATAACAGTTGTAGTAGGGGC+AGG + chr1_2:15065351-15065370 Msa0058580:CDS 45.0%
TAACAGTTGTAGTAGGGGCA+GGG + chr1_2:15065352-15065371 Msa0058580:CDS 45.0%
ACCAGCTATCCATCCTAGTT+GGG - chr1_2:15065403-15065422 None:intergenic 45.0%
TACCAGCTATCCATCCTAGT+TGG - chr1_2:15065404-15065423 None:intergenic 45.0%
CAAGCTGTCAAGAGCTACTT+AGG + chr1_2:15065534-15065553 Msa0058580:CDS 45.0%
TGAGCTCAAGAGCTCTACAA+TGG + chr1_2:15065775-15065794 Msa0058580:intron 45.0%
GGAACGATGCAAGTGATTTG+TGG + chr1_2:15065954-15065973 Msa0058580:CDS 45.0%
!! AAAGCTTGCTGGGATAACAG+TGG + chr1_2:15065992-15066011 Msa0058580:CDS 45.0%
!! AAGCTTGCTGGGATAACAGT+GGG + chr1_2:15065993-15066012 Msa0058580:CDS 45.0%
!!! AAGGCATTTTGGCTAAGAGC+AGG + chr1_2:15066708-15066727 Msa0058580:intron 45.0%
TTGGCTAAGAGCAGGAAAAG+GGG + chr1_2:15066716-15066735 Msa0058580:CDS 45.0%
TTCTGGCCCTATTTGTGTTC+CGG - chr1_2:15066757-15066776 None:intergenic 45.0%
TTCTCTGCAGCAGTTAGTTC+TGG - chr1_2:15066774-15066793 None:intergenic 45.0%
TAACTGCTGCAGAGAAAGTG+TGG + chr1_2:15066778-15066797 Msa0058580:CDS 45.0%
TGGCGTGTTTGCACTTCAAT+GGG + chr1_2:15066798-15066817 Msa0058580:CDS 45.0%
ATGAAAAGGGCCAACGTGAT+AGG + chr1_2:15067018-15067037 Msa0058580:CDS 45.0%
TGAAAAGGGCCAACGTGATA+GGG + chr1_2:15067019-15067038 Msa0058580:CDS 45.0%
TGTTGATACCCCTATCACGT+TGG - chr1_2:15067031-15067050 None:intergenic 45.0%
AGCCAAGGCAACTACATAGT+AGG - chr1_2:15067068-15067087 None:intergenic 45.0%
CCAAGGGCAACTATCCAATA+GGG - chr1_2:15067144-15067163 None:intergenic 45.0%
TCCAAGGGCAACTATCCAAT+AGG - chr1_2:15067145-15067164 None:intergenic 45.0%
CCTGATATGCTCCAATCATG+TGG - chr1_2:15067185-15067204 None:intergenic 45.0%
CCACATGATTGGAGCATATC+AGG + chr1_2:15067182-15067201 Msa0058580:CDS 45.0%
AAATGGGTGCTAATATCGCG+TGG + chr1_2:15067445-15067464 Msa0058580:CDS 45.0%
ACTAGCAACCATTCTTGCCA+TGG + chr1_2:15067569-15067588 Msa0058580:CDS 45.0%
CTGTTGGGAGCAATTGGATT+TGG + chr1_2:15067621-15067640 Msa0058580:CDS 45.0%
GCATACCCGTGTTATCATTG+AGG + chr1_2:15067691-15067710 Msa0058580:CDS 45.0%
TACCCGTGTTATCATTGAGG+TGG + chr1_2:15067694-15067713 Msa0058580:CDS 45.0%
CACCACCTCAATGATAACAC+GGG - chr1_2:15067699-15067718 None:intergenic 45.0%
!!! ATAATTTAATATTTTATTAC+AGG + chr1_2:15067392-15067411 Msa0058580:intron 5.0%
AACAGTTGTAGTAGGGGCAG+GGG + chr1_2:15065353-15065372 Msa0058580:CDS 50.0%
TATCCATCCTAGTTGGGCCA+TGG - chr1_2:15065397-15065416 None:intergenic 50.0%
AGGTTTCCAGACCCAATCAC+TGG + chr1_2:15065489-15065508 Msa0058580:CDS 50.0%
! CTTTTGCCAGTGATTGGGTC+TGG - chr1_2:15065498-15065517 None:intergenic 50.0%
!! ATTTTAGCAACGAGGGCGAG+CGG + chr1_2:15065628-15065647 Msa0058580:intron 50.0%
!! AAACGAGGTGATAGCGGCAA+TGG - chr1_2:15066450-15066469 None:intergenic 50.0%
ATTGCCGCTATCACCTCGTT+TGG + chr1_2:15066449-15066468 Msa0058580:CDS 50.0%
GTGGCGTGTTTGCACTTCAA+TGG + chr1_2:15066797-15066816 Msa0058580:CDS 50.0%
GAAAAGGGCCAACGTGATAG+GGG + chr1_2:15067020-15067039 Msa0058580:CDS 50.0%
!!! TGCCTTGGCTATGCTGCTTT+TGG + chr1_2:15067078-15067097 Msa0058580:CDS 50.0%
CACCAAAAGCAGCATAGCCA+AGG - chr1_2:15067083-15067102 None:intergenic 50.0%
CCCTATTGGATAGTTGCCCT+TGG + chr1_2:15067141-15067160 Msa0058580:CDS 50.0%
TGGCATTGCCATGGCAAGAA+TGG - chr1_2:15067580-15067599 None:intergenic 50.0%
!! CTAGCTCTGTTGGGAGCAAT+TGG + chr1_2:15067615-15067634 Msa0058580:CDS 50.0%
! TTGGTGGGCAGAGCAGATGA+AGG - chr1_2:15064572-15064591 None:intergenic 55.0%
!! AGGGGTGTTGGCTCTAGCAT+GGG + chr1_2:15065371-15065390 Msa0058580:CDS 55.0%
GCCCAACTAGGATGGATAGC+TGG + chr1_2:15065399-15065418 Msa0058580:CDS 55.0%
! GGGGCATCTACCAGCATAAC+CGG + chr1_2:15066735-15066754 Msa0058580:CDS 55.0%
!! GCTTTTGGTGACCACACACC+AGG + chr1_2:15067093-15067112 Msa0058580:CDS 55.0%
! TGTAGTAGGGGCAGGGGTGT+TGG + chr1_2:15065359-15065378 Msa0058580:CDS 60.0%
!! CAGGGGTGTTGGCTCTAGCA+TGG + chr1_2:15065370-15065389 Msa0058580:CDS 60.0%
!! GTTGGCTCTAGCATGGGCCA+TGG + chr1_2:15065377-15065396 Msa0058580:CDS 60.0%
GCATGGGCCATGGCCCAACT+AGG + chr1_2:15065387-15065406 Msa0058580:CDS 65.0%
GGGCCATGGCCCAACTAGGA+TGG + chr1_2:15065391-15065410 Msa0058580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 15064139 15068202 15064139 ID=Msa0058580;Name=Msa0058580
chr1_2 mRNA 15064139 15068202 15064139 ID=Msa0058580-mRNA-1;Parent=Msa0058580;Name=Msa0058580-mRNA-1;_AED=0.24;_eAED=0.24;_QI=207|0.71|0.75|1|0.85|0.75|8|346|455
chr1_2 exon 15064139 15064406 15064139 ID=Msa0058580-mRNA-1:exon:6074;Parent=Msa0058580-mRNA-1
chr1_2 exon 15065322 15065555 15065322 ID=Msa0058580-mRNA-1:exon:6075;Parent=Msa0058580-mRNA-1
chr1_2 exon 15065952 15066045 15065952 ID=Msa0058580-mRNA-1:exon:6076;Parent=Msa0058580-mRNA-1
chr1_2 exon 15066331 15066505 15066331 ID=Msa0058580-mRNA-1:exon:6077;Parent=Msa0058580-mRNA-1
chr1_2 exon 15066711 15066869 15066711 ID=Msa0058580-mRNA-1:exon:6078;Parent=Msa0058580-mRNA-1
chr1_2 exon 15066982 15067203 15066982 ID=Msa0058580-mRNA-1:exon:6079;Parent=Msa0058580-mRNA-1
chr1_2 exon 15067414 15067883 15067414 ID=Msa0058580-mRNA-1:exon:6080;Parent=Msa0058580-mRNA-1
chr1_2 exon 15067904 15068202 15067904 ID=Msa0058580-mRNA-1:exon:6081;Parent=Msa0058580-mRNA-1
chr1_2 five_prime_UTR 15064139 15064345 15064139 ID=Msa0058580-mRNA-1:five_prime_utr;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15064346 15064406 15064346 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15065322 15065555 15065322 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15065952 15066045 15065952 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15066331 15066505 15066331 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15066711 15066869 15066711 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15066982 15067203 15066982 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 CDS 15067414 15067836 15067414 ID=Msa0058580-mRNA-1:cds;Parent=Msa0058580-mRNA-1
chr1_2 three_prime_UTR 15067837 15067883 15067837 ID=Msa0058580-mRNA-1:three_prime_utr;Parent=Msa0058580-mRNA-1
chr1_2 three_prime_UTR 15067904 15068202 15067904 ID=Msa0058580-mRNA-1:three_prime_utr;Parent=Msa0058580-mRNA-1
Gene Sequence

>Msa0058580

ATGAGTATTACACAAACTCTAATCATGGAACAAGATGATGATGGTAAAGCCAAAAGAACTGGGAATGTGTGGACTGCTGTTACACATATCATAACAGTTGTAGTAGGGGCAGGGGTGTTGGCTCTAGCATGGGCCATGGCCCAACTAGGATGGATAGCTGGTATAGCCAGTATACTAACCTTTGCATCCATCTCTATTTTCACTTACAGTCTTGTAGCTGATTGCTATAGGTTTCCAGACCCAATCACTGGCAAAAGAAATTATACTTACATGCAAGCTGTCAAGAGCTACTTAGGTGGAACGATGCAAGTGATTTGTGGATTGATTTTGTATGGAAAGCTTGCTGGGATAACAGTGGGCTACACAATAACTTCATCGACAAGCTTAGCAAAAGGACTTGAAGCTGATTGCAGCACTTCTTATAATCCCTACATGATCGGTTTTGGGATATTGCAGATTTTCTTGTCTCAAATTCCCAACTTTCACAAACTGACATGGATCTCAACCATTGCCGCTATCACCTCGTTTGGTTATGTATTCATTGCAGTTGGCCTTTGTCTTAGTGCATTTTGGCTAAGAGCAGGAAAAGGGGCATCTACCAGCATAACCGGAACACAAATAGGGCCAGAACTAACTGCTGCAGAGAAAGTGTGGCGTGTTTGCACTTCAATGGGAAACATAGCTCTTGCTAGCACTTACGCTACTGTTATTTACGACATAATGGATACATTAAAGTCACATCCACCAGAAAATAAACAAATGAAAAGGGCCAACGTGATAGGGGTATCAACAATGACAATGATATTCCTACTATGTAGTTGCCTTGGCTATGCTGCTTTTGGTGACCACACACCAGGAAACATTTTTTTTGGATTTTATGAGCCCTATTGGATAGTTGCCCTTGGAGAAGTATGCATAGTAATCCACATGATTGGAGCATATCAGGTCATGGCACAACCATTTTTTCGCGTCGTTGAAATGGGTGCTAATATCGCGTGGCCCGATTCAAAATTCATAAATCAAGACTATTCATTTAACGTGCGTGGTGCAACAATCAAGTTGAACTTATTTAGGTTAATTTGGAGGACGATATTTGTGATACTAGCAACCATTCTTGCCATGGCAATGCCATTTTTCAATCAATTTCTAGCTCTGTTGGGAGCAATTGGATTTGGTCCATTAGTTGTCTTCTTCCCTATACAAATGCATATTGCTCAGAAGCGCATACCCGTGTTATCATTGAGGTGGTGTGCGCTCCAACTTTTGAATTGTCTTTGTATGGTTGTCTCATTGGCCGCTGTAGTTGCTTCAATTCATGAAATTAGTGAAAATATTCACAAATACAAGATTTTTGCTTATAAACAATAG
Protein sequence

>Msa0058580

MSITQTLIMEQDDDGKAKRTGNVWTAVTHIITVVVGAGVLALAWAMAQLGWIAGIASILTFASISIFTYSLVADCYRFPDPITGKRNYTYMQAVKSYLGGTMQVICGLILYGKLAGITVGYTITSSTSLAKGLEADCSTSYNPYMIGFGILQIFLSQIPNFHKLTWISTIAAITSFGYVFIAVGLCLSAFWLRAGKGASTSITGTQIGPELTAAEKVWRVCTSMGNIALASTYATVIYDIMDTLKSHPPENKQMKRANVIGVSTMTMIFLLCSCLGYAAFGDHTPGNIFFGFYEPYWIVALGEVCIVIHMIGAYQVMAQPFFRVVEMGANIAWPDSKFINQDYSFNVRGATIKLNLFRLIWRTIFVILATILAMAMPFFNQFLALLGAIGFGPLVVFFPIQMHIAQKRIPVLSLRWCALQLLNCLCMVVSLAAVVASIHEISENIHKYKIFAYKQ*