AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149810 MtrunA17_Chr1g0146331 94.206 466 14 3 1 453 1 466 0.0 884
Msa0149810 MtrunA17_Chr1g0146391 85.242 454 57 1 10 453 4 457 0.0 798
Msa0149810 MtrunA17_Chr2g0293331 78.901 455 86 1 9 453 3 457 0.0 751
Msa0149810 MtrunA17_Chr3g0140531 66.882 465 142 2 1 453 7 471 0.0 649
Msa0149810 MtrunA17_Chr1g0146411 57.174 453 175 5 12 452 27 472 0.0 534
Msa0149810 MtrunA17_Chr3g0140541 53.201 453 198 3 12 452 19 469 1.23e-168 482
Msa0149810 MtrunA17_Chr3g0140761 47.484 457 224 5 12 453 27 482 1.45e-158 457
Msa0149810 MtrunA17_Chr1g0146491 47.807 456 224 4 12 453 17 472 1.06e-155 449
Msa0149810 MtrunA17_Chr1g0206871 47.797 454 214 5 18 449 15 467 4.51e-151 437
Msa0149810 MtrunA17_Chr8g0384661 46.154 455 228 5 8 449 40 490 1.90e-150 437
Msa0149810 MtrunA17_Chr1g0159761 46.903 452 225 4 12 449 21 471 1.11e-146 427
Msa0149810 MtrunA17_Chr3g0125081 46.903 452 222 5 12 449 28 475 3.31e-145 423
Msa0149810 MtrunA17_Chr3g0130651 48.552 449 216 4 12 449 20 464 1.38e-144 421
Msa0149810 MtrunA17_Chr3g0125101 46.578 453 223 6 12 449 28 476 9.05e-143 417
Msa0149810 MtrunA17_Chr3g0125091 46.018 452 227 5 12 449 28 476 6.54e-142 414
Msa0149810 MtrunA17_Chr3g0130641 44.469 452 234 5 12 450 27 474 2.44e-140 410
Msa0149810 MtrunA17_Chr4g0037201 44.079 456 237 4 12 449 53 508 1.82e-138 407
Msa0149810 MtrunA17_Chr3g0103231 40.492 447 249 5 12 444 17 460 5.86e-123 365
Msa0149810 MtrunA17_Chr3g0103211 40.090 444 246 5 12 438 17 457 5.36e-118 353
Msa0149810 MtrunA17_Chr5g0447221 40.700 457 247 8 2 443 18 465 1.07e-115 347
Msa0149810 MtrunA17_Chr3g0103221 39.955 448 246 8 15 445 27 468 1.27e-113 342
Msa0149810 MtrunA17_Chr3g0103271 40.498 442 246 5 12 439 21 459 1.36e-111 337
Msa0149810 MtrunA17_Chr1g0206851 44.384 365 183 5 99 449 19 377 6.06e-107 322
Msa0149810 MtrunA17_Chr5g0447231 36.947 452 268 5 2 439 9 457 1.27e-102 313
Msa0149810 MtrunA17_Chr1g0206831 46.129 310 157 4 131 436 24 327 1.99e-96 293
Msa0149810 MtrunA17_Chr3g0103251 35.244 349 191 4 123 439 22 367 5.64e-76 242
Msa0149810 MtrunA17_Chr5g0402151 40.878 296 129 6 21 304 3 264 1.81e-69 222
Msa0149810 MtrunA17_Chr1g0206821 47.706 218 111 2 235 449 310 527 2.08e-69 229
Msa0149810 MtrunA17_Chr1g0206821 46.245 253 121 3 1 238 1 253 8.32e-68 225
Msa0149810 MtrunA17_Chr3g0130671 46.296 216 103 3 12 216 33 246 1.35e-60 199
Msa0149810 MtrunA17_Chr3g0130661 43.646 181 96 3 273 450 1 178 1.84e-48 164
Msa0149810 MtrunA17_Chr6g0458931 26.444 450 279 12 5 435 20 436 2.59e-39 147
Msa0149810 MtrunA17_Chr4g0057851 26.267 434 279 11 9 433 1 402 7.60e-37 140
Msa0149810 MtrunA17_Chr1g0146351 58.586 99 40 1 28 126 13 110 5.19e-35 126
Msa0149810 MtrunA17_Chr1g0184721 24.722 449 302 11 11 449 15 437 1.04e-34 134
Msa0149810 MtrunA17_Chr3g0077651 28.188 447 280 12 17 450 51 469 1.99e-34 134
Msa0149810 MtrunA17_Chr2g0331721 26.379 417 251 10 17 414 46 425 6.04e-34 132
Msa0149810 MtrunA17_Chr8g0376991 25.721 451 282 14 17 450 22 436 1.24e-33 131
Msa0149810 MtrunA17_Chr3g0103261 48.333 120 62 0 12 131 17 136 4.99e-33 122
Msa0149810 MtrunA17_Chr1g0206841 59.341 91 37 0 9 99 12 102 3.59e-32 118
Msa0149810 MtrunA17_Chr5g0422741 26.950 423 265 13 5 414 12 403 3.77e-31 124
Msa0149810 MtrunA17_Chr1g0198541 25.727 447 291 10 14 449 20 436 1.36e-29 120
Msa0149810 MtrunA17_Chr2g0328081 27.394 376 229 12 10 372 6 350 1.46e-29 119
Msa0149810 MtrunA17_Chr1g0206861 58.889 90 37 0 10 99 13 102 2.38e-29 112
Msa0149810 MtrunA17_Chr6g0459011 26.585 410 258 10 34 433 1 377 3.46e-29 118
Msa0149810 MtrunA17_Chr6g0459021 27.329 322 203 7 17 324 33 337 4.28e-29 118
Msa0149810 MtrunA17_Chr6g0458921 26.196 439 266 12 9 427 1 401 7.35e-29 117
Msa0149810 MtrunA17_Chr7g0230011 28.527 319 203 8 17 324 29 333 1.01e-28 117
Msa0149810 MtrunA17_Chr6g0459031 25.654 382 231 11 10 372 3 350 2.78e-28 116
Msa0149810 MtrunA17_Chr3g0122921 28.438 320 202 10 17 324 32 336 7.92e-28 114
Msa0149810 MtrunA17_Chr1g0198531 26.329 414 267 11 10 414 17 401 3.14e-27 113
Msa0149810 MtrunA17_Chr6g0459001 28.710 310 196 9 16 314 20 315 8.55e-26 109
Msa0149810 MtrunA17_Chr8g0387941 23.799 458 305 13 10 449 16 447 2.17e-23 102
Msa0149810 MtrunA17_Chr4g0027241 25.304 411 255 14 10 398 28 408 6.49e-23 100
Msa0149810 MtrunA17_Chr4g0038711 23.543 446 295 11 19 442 71 492 1.04e-18 88.6
Msa0149810 MtrunA17_Chr3g0143701 23.077 455 290 15 10 436 73 495 8.12e-18 85.9
Msa0149810 MtrunA17_Chr1g0198081 24.270 445 279 18 29 450 70 479 1.23e-17 85.1
Msa0149810 MtrunA17_Chr5g0436281 22.330 412 282 10 46 450 1 381 1.73e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149810 AT1G10010.2 51.885 451 204 3 12 449 22 472 5.04e-169 484
Msa0149810 AT1G10010.1 51.885 451 204 3 12 449 21 471 6.26e-169 483
Msa0149810 AT1G58360.1 51.441 451 206 3 12 449 30 480 1.85e-168 483
Msa0149810 AT5G49630.1 49.448 453 214 5 12 449 26 478 4.50e-156 451
Msa0149810 AT1G77380.1 48.559 451 218 4 12 449 23 472 3.25e-153 444
Msa0149810 AT1G44100.1 45.614 456 230 4 12 449 21 476 7.68e-146 425
Msa0149810 AT5G63850.1 44.690 452 235 4 12 449 12 462 1.38e-143 419
Msa0149810 AT5G09220.1 43.805 452 239 4 12 449 39 489 2.40e-142 417
Msa0149810 AT5G23810.1 44.131 426 217 7 11 418 18 440 6.63e-116 348
Msa0149810 AT5G23810.2 45.152 330 163 6 11 325 18 344 2.09e-88 274
Msa0149810 AT5G23810.4 44.398 241 118 5 11 238 18 255 2.26e-59 196
Msa0149810 AT5G23810.5 47.938 194 88 4 11 191 18 211 2.34e-51 173
Msa0149810 AT5G23810.3 47.938 194 88 4 11 191 18 211 2.34e-51 173
Msa0149810 AT5G40780.1 28.837 430 261 13 17 435 32 427 4.47e-38 144
Msa0149810 AT1G48640.1 27.842 431 264 12 17 435 39 434 7.86e-38 143
Msa0149810 AT5G40780.3 29.056 413 248 13 34 435 1 379 1.69e-34 133
Msa0149810 AT5G40780.2 29.056 413 248 13 34 435 1 379 1.69e-34 133
Msa0149810 AT1G24400.1 27.009 448 280 11 17 450 27 441 2.50e-33 130
Msa0149810 AT3G01760.1 24.605 443 290 10 17 445 30 442 3.03e-30 122
Msa0149810 AT1G71680.1 25.450 444 293 9 17 450 33 448 2.02e-29 120
Msa0149810 AT1G61270.1 23.810 462 304 13 3 447 12 442 7.43e-29 118
Msa0149810 AT1G71680.2 28.302 318 206 7 17 324 33 338 9.07e-29 116
Msa0149810 AT1G67640.1 25.893 448 285 13 17 450 27 441 2.36e-28 117
Msa0149810 AT1G25530.1 25.664 452 295 12 10 450 19 440 2.55e-28 116
Msa0149810 AT1G08230.2 26.134 463 272 17 18 450 27 449 1.71e-23 102
Msa0149810 AT5G41800.1 22.894 463 310 12 8 450 12 447 3.35e-22 99.0
Msa0149810 AT3G55740.1 23.002 413 278 10 46 450 57 437 5.57e-19 89.4
Msa0149810 AT3G55740.2 23.002 413 278 10 46 450 1 381 6.04e-19 88.6
Msa0149810 AT3G55740.3 23.002 413 278 10 46 450 1 381 6.04e-19 88.6
Msa0149810 AT1G08230.4 28.308 325 184 13 144 450 37 330 2.45e-16 80.5
Msa0149810 AT1G08230.6 28.308 325 184 13 144 450 37 330 2.45e-16 80.5
Msa0149810 AT1G08230.5 28.308 325 184 13 144 450 37 330 2.45e-16 80.5
Msa0149810 AT1G08230.3 26.720 378 215 16 95 450 12 349 2.80e-16 80.5
Msa0149810 AT2G39890.2 21.845 412 284 13 46 450 60 440 1.19e-14 76.3
Msa0149810 AT2G39890.1 21.845 412 284 13 46 450 60 440 1.19e-14 76.3
Msa0149810 AT2G39890.3 21.845 412 284 13 46 450 1 381 1.52e-14 75.5
Msa0149810 AT2G36590.1 22.642 371 243 8 46 406 54 390 2.77e-14 75.1

Find 110 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTGTTTAGGTTAATT+TGG 0.187378 1_4:+10671237 Msa0149810:CDS
TTTCTATAAATATGAGAATA+AGG 0.229909 1_4:-10671638 None:intergenic
AATCCCTACATGATCGGTTT+TGG 0.237586 1_4:+10669824 Msa0149810:CDS
CTGAGTAAGCCGGTTTATTT+GGG 0.252552 1_4:-10667664 None:intergenic
CAATCAATTTGAACTTGTTT+AGG 0.255382 1_4:+10671228 Msa0149810:CDS
TCTGAGTAAGCCGGTTTATT+TGG 0.261955 1_4:-10667665 None:intergenic
CCACATGATTGGAGCATATC+AGG 0.262285 1_4:+10670648 Msa0149810:CDS
TGCCTTGGCTATGCTGCTTT+TGG 0.276773 1_4:+10670544 Msa0149810:CDS
AGCATAACCGGAACACAAAT+AGG 0.277840 1_4:+10670213 Msa0149810:CDS
CTGTTGGGAGCAATTGGATT+TGG 0.283088 1_4:+10671329 Msa0149810:CDS
TGAGCAATATGCATTTGTAT+AGG 0.308548 1_4:-10671371 None:intergenic
TCTTTGTATGGTTGTCTCAT+TGG 0.316701 1_4:+10671448 Msa0149810:CDS
GCATCTTTAAATTTGTAATC+AGG 0.318004 1_4:+10671544 Msa0149810:exon
TTCCGGCCCTATTTGTGTTC+CGG 0.324687 1_4:-10670220 None:intergenic
GAGCAATATGCATTTGTATA+GGG 0.353394 1_4:-10671370 None:intergenic
AAGGTACATACCAGTTCTTT+TGG 0.354167 1_4:-10667775 None:intergenic
CAGGGGTGTTGGCTCTAGCA+TGG 0.361926 1_4:+10668778 Msa0149810:CDS
CTAGCTCTGTTGGGAGCAAT+TGG 0.365907 1_4:+10671323 Msa0149810:CDS
CAATAAAATAAATATTTGAT+TGG 0.374722 1_4:+10667558 Msa0149810:five_prime_UTR
TACTGTTATTTACGACATAA+TGG 0.375376 1_4:+10670314 Msa0149810:CDS
CCATGTCAGTTTGTGAAAGT+TGG 0.389481 1_4:-10669876 None:intergenic
TGTAGTAGGGGCAGGGGTGT+TGG 0.391643 1_4:+10668767 Msa0149810:CDS
TGTCTTACTGTCCTTATCTC+AGG 0.412282 1_4:+10669956 Msa0149810:CDS
GTCTTGTAGCTGATTGCTAT+AGG 0.413676 1_4:+10668877 Msa0149810:CDS
ACACTCATGAATGATATAGA+TGG 0.414715 1_4:-10667592 None:intergenic
CAATCAATTTCTAGCTCTGT+TGG 0.414936 1_4:+10671313 Msa0149810:CDS
TCCAAGGGCAACTATCCAAT+AGG 0.418884 1_4:-10670608 None:intergenic
ATGAAAAGGGCCAATGTGAC+AGG 0.425494 1_4:+10670484 Msa0149810:CDS
ATTGCCGCTATCACCTCGTT+TGG 0.429141 1_4:+10669908 Msa0149810:CDS
CATGTCAGTTTGTGAAAGTT+GGG 0.432632 1_4:-10669875 None:intergenic
TACAAAGACAATTTAAAAGT+TGG 0.433102 1_4:-10671433 None:intergenic
CAAGCTGTCAAGAGCTACTT+AGG 0.436812 1_4:+10668942 Msa0149810:CDS
TTATTCTCATATTTATAGAA+AGG 0.437788 1_4:+10671640 Msa0149810:three_prime_UTR
TTCATAGTAATCCACATGAT+TGG 0.440064 1_4:+10670637 Msa0149810:CDS
AACAACTACCCCAAATAAAC+CGG 0.440192 1_4:+10667655 Msa0149810:five_prime_UTR
GGGGCATCTACTAGCATAAC+CGG 0.440485 1_4:+10670201 Msa0149810:CDS
AGGGGTGTTGGCTCTAGCAT+GGG 0.441108 1_4:+10668779 Msa0149810:CDS
CAGAAAATAAACAAATGAAA+AGG 0.441906 1_4:+10670470 Msa0149810:CDS
TTCTATAAATATGAGAATAA+GGG 0.448403 1_4:-10671637 None:intergenic
GCACGTTAAATGAATAGTCT+TGG 0.449335 1_4:-10671196 None:intergenic
CATATCATAACAGTTGTAGT+AGG 0.450490 1_4:+10668753 Msa0149810:CDS
ATAGGGAAGAACACAACTAA+TGG 0.451132 1_4:-10671353 None:intergenic
AATCAATTTCTAGCTCTGTT+GGG 0.451943 1_4:+10671314 Msa0149810:CDS
TACCAGCTATCCATCCTAGT+TGG 0.452399 1_4:-10668809 None:intergenic
GGTTATGTATTCATTGCAGT+TGG 0.455037 1_4:+10669929 Msa0149810:CDS
GCATAACCGGAACACAAATA+GGG 0.463229 1_4:+10670214 Msa0149810:CDS
CTAGGATGGATAGCTGGTAT+AGG 0.464604 1_4:+10668813 Msa0149810:CDS
GTGGCGTGTTTGCACTTCAA+TGG 0.465802 1_4:+10670263 Msa0149810:CDS
TTCCTGCTATGTAGTTGCCT+TGG 0.466308 1_4:+10670529 Msa0149810:CDS
TATTCTCATATTTATAGAAA+GGG 0.467678 1_4:+10671641 Msa0149810:three_prime_UTR
TTCCTTTGTCACTTTATCCA+AGG 0.468551 1_4:+10671680 Msa0149810:three_prime_UTR
GATGGTAAAGCCAAAAGAAC+TGG 0.469877 1_4:+10667765 Msa0149810:CDS
GTTGGCTCTAGCATGGGCCA+TGG 0.482757 1_4:+10668785 Msa0149810:CDS
AGAAAATAAACAAATGAAAA+GGG 0.483828 1_4:+10670471 Msa0149810:CDS
TATTACACAAACTCTAATCA+TGG 0.488415 1_4:+10667731 Msa0149810:CDS
ACCAGCTATCCATCCTAGTT+GGG 0.489518 1_4:-10668808 None:intergenic
TTTGGCTAAGAGCAGGAAAA+GGG 0.492627 1_4:+10670181 Msa0149810:intron
CCAAGGGCAACTATCCAATA+GGG 0.493750 1_4:-10670607 None:intergenic
CCCTATTGGATAGTTGCCCT+TGG 0.494101 1_4:+10670607 Msa0149810:CDS
ATAACAGTTGTAGTAGGGGC+AGG 0.494302 1_4:+10668759 Msa0149810:CDS
TGGCGTGTTTGCACTTCAAT+GGG 0.506484 1_4:+10670264 Msa0149810:CDS
TGGCATTGCCATGGCAAGAA+TGG 0.508311 1_4:-10671285 None:intergenic
GGAACGATGCAAGTGATTTG+TGG 0.514681 1_4:+10669418 Msa0149810:CDS
TCTTATAATCCCTACATGAT+CGG 0.515618 1_4:+10669818 Msa0149810:CDS
ATATCATAACAGTTGTAGTA+GGG 0.519670 1_4:+10668754 Msa0149810:CDS
GACTATTCATTTAACGTGCG+TGG 0.527695 1_4:+10671200 Msa0149810:CDS
ATCCCAAAACCGATCATGTA+GGG 0.529885 1_4:-10669827 None:intergenic
AGATAACTAAATGATATAAG+TGG 0.534402 1_4:+10667685 Msa0149810:five_prime_UTR
AGCCAAGGCAACTACATAGC+AGG 0.535863 1_4:-10670531 None:intergenic
GCATGGGCCATGGCCCAACT+AGG 0.536744 1_4:+10668795 Msa0149810:CDS
GGGCCATGGCCCAACTAGGA+TGG 0.542624 1_4:+10668799 Msa0149810:CDS
CCAACTTTCACAAACTGACA+TGG 0.543853 1_4:+10669876 Msa0149810:CDS
AACAGTTGTAGTAGGGGCAG+GGG 0.543889 1_4:+10668761 Msa0149810:CDS
AATCCCACCAAATAAAACCT+TGG 0.546835 1_4:-10671697 None:intergenic
ATTTAGTTATCTGAGTAAGC+CGG 0.551482 1_4:-10667674 None:intergenic
TATCCATCCTAGTTGGGCCA+TGG 0.551644 1_4:-10668802 None:intergenic
CATTGATACCCCTGTCACAT+TGG 0.552253 1_4:-10670494 None:intergenic
AAACGAGGTGATAGCGGCAA+TGG 0.553749 1_4:-10669906 None:intergenic
GCCCAACTAGGATGGATAGC+TGG 0.559262 1_4:+10668807 Msa0149810:CDS
AGGTTTCCAGACCCAATCAC+TGG 0.561683 1_4:+10668897 Msa0149810:CDS
TTACTATGAATACTTCTCCA+AGG 0.568177 1_4:-10670624 None:intergenic
AACCGGAACACAAATAGGGC+CGG 0.569882 1_4:+10670218 Msa0149810:CDS
TAACAGTTGTAGTAGGGGCA+GGG 0.570383 1_4:+10668760 Msa0149810:CDS
ACTGTAAGTGAAAATAGAGA+TGG 0.570667 1_4:-10668856 None:intergenic
CACCAAAAGCAGCATAGCCA+AGG 0.570972 1_4:-10670546 None:intergenic
TCAACAAACTACCTGAGATA+AGG 0.571296 1_4:-10669967 None:intergenic
TATCCCAAAACCGATCATGT+AGG 0.575682 1_4:-10669828 None:intergenic
AAGCTTGCTGGGATAACAGT+GGG 0.590727 1_4:+10669457 Msa0149810:CDS
TGAAAAGGGCCAATGTGACA+GGG 0.592390 1_4:+10670485 Msa0149810:CDS
AATAGCAACCATTCTTGCCA+TGG 0.596755 1_4:+10671277 Msa0149810:CDS
TATTTCTTTAGAGATAGTGT+TGG 0.599930 1_4:+10671745 Msa0149810:three_prime_UTR
AACCTTGGATAAAGTGACAA+AGG 0.605476 1_4:-10671682 None:intergenic
CCTGATATGCTCCAATCATG+TGG 0.605782 1_4:-10670648 None:intergenic
TACTATGAATACTTCTCCAA+GGG 0.610459 1_4:-10670623 None:intergenic
GCAATATTGCAGGGAATGTG+TGG 0.613247 1_4:+10668718 Msa0149810:intron
TACCCGTGTTATCATTGAGG+TGG 0.616935 1_4:+10671402 Msa0149810:CDS
ACACCACCTCAATGATAACA+CGG 0.627382 1_4:-10671405 None:intergenic
GCATACCCGTGTTATCATTG+AGG 0.631382 1_4:+10671399 Msa0149810:CDS
ATCATGGAACAAGATGATGA+TGG 0.632907 1_4:+10667747 Msa0149810:CDS
TCATGAATGATATAGATGGA+TGG 0.638075 1_4:-10667588 None:intergenic
TATCATAACAGTTGTAGTAG+GGG 0.641841 1_4:+10668755 Msa0149810:CDS
TTGGCTAAGAGCAGGAAAAG+GGG 0.645369 1_4:+10670182 Msa0149810:intron
ATAACCAAACGAGGTGATAG+CGG 0.652735 1_4:-10669912 None:intergenic
CACCACCTCAATGATAACAC+GGG 0.666427 1_4:-10671404 None:intergenic
AGATAAGGACAGTAAGACAA+AGG 0.669370 1_4:-10669952 None:intergenic
GAAAAGGGCCAATGTGACAG+GGG 0.672165 1_4:+10670486 Msa0149810:CDS
AAAGCTTGCTGGGATAACAG+TGG 0.698440 1_4:+10669456 Msa0149810:CDS
TGAGTAAGCCGGTTTATTTG+GGG 0.701635 1_4:-10667663 None:intergenic
AAATGGGTGCTAATATCGTG+TGG 0.710937 1_4:+10671153 Msa0149810:CDS
AATGAATACATAACCAAACG+AGG 0.738565 1_4:-10669921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAATAAATATTTGAT+TGG + chr1_4:10667558-10667577 Msa0149810:five_prime_UTR 10.0%
!!! TTATATTTCTATTTGATAAT+AGG + chr1_4:10669394-10669413 Msa0149810:intron 10.0%
!! TTAAAAAACAAAGAATTAGA+TGG - chr1_4:10668433-10668452 None:intergenic 15.0%
!!! ATCTAATTCTTTGTTTTTTA+AGG + chr1_4:10668432-10668451 Msa0149810:intron 15.0%
!! TTTCATTTATACTTATTTAG+AGG - chr1_4:10668671-10668690 None:intergenic 15.0%
!! ATCATGTTATGATTAATATT+TGG + chr1_4:10668692-10668711 Msa0149810:intron 15.0%
!! CATAATACAAAAAAAAATCA+TGG + chr1_4:10669606-10669625 Msa0149810:intron 15.0%
!! AATAAGATGTATCATAAAAT+TGG + chr1_4:10670107-10670126 Msa0149810:intron 15.0%
!! TTATATATGTCTAATTACAA+AGG + chr1_4:10670155-10670174 Msa0149810:intron 15.0%
!!! ATTTTTCCATTATTTTGTTT+AGG + chr1_4:10670426-10670445 Msa0149810:intron 15.0%
!! AGAAAATAAACAAATGAAAA+GGG + chr1_4:10670471-10670490 Msa0149810:CDS 15.0%
!! ATAAAACTCAATAATTAAAC+TGG - chr1_4:10670691-10670710 None:intergenic 15.0%
!! TATCATGGTAATATATAATT+TGG - chr1_4:10670803-10670822 None:intergenic 15.0%
!! AAATTATATATTACCATGAT+AGG + chr1_4:10670802-10670821 Msa0149810:intron 15.0%
!! TATGCTATTAGTATTTATTT+AGG + chr1_4:10670884-10670903 Msa0149810:intron 15.0%
!! TTCTATAAATATGAGAATAA+GGG - chr1_4:10671640-10671659 None:intergenic 15.0%
!! TTTCTATAAATATGAGAATA+AGG - chr1_4:10671641-10671660 None:intergenic 15.0%
!! TTATTCTCATATTTATAGAA+AGG + chr1_4:10671640-10671659 Msa0149810:three_prime_UTR 15.0%
!! TATTCTCATATTTATAGAAA+GGG + chr1_4:10671641-10671660 Msa0149810:three_prime_UTR 15.0%
!! AGATAACTAAATGATATAAG+TGG + chr1_4:10667685-10667704 Msa0149810:five_prime_UTR 20.0%
!! AATTAAAATAGAAAGGAAGA+AGG - chr1_4:10667797-10667816 None:intergenic 20.0%
!! TTCAGAGAATTAAAATAGAA+AGG - chr1_4:10667804-10667823 None:intergenic 20.0%
!! TGTAGTATTTCCTAATTATA+TGG + chr1_4:10667867-10667886 Msa0149810:intron 20.0%
!! AAGATTGATACCATATAATT+AGG - chr1_4:10667880-10667899 None:intergenic 20.0%
!!! ATAGTTGCTTTTAAAACTTT+CGG - chr1_4:10668390-10668409 None:intergenic 20.0%
!!! TGTATCATATATTTAGAACA+GGG - chr1_4:10669015-10669034 None:intergenic 20.0%
!!! ATGTATCATATATTTAGAAC+AGG - chr1_4:10669016-10669035 None:intergenic 20.0%
!! TGTATTATTCAATAAGAAAG+AGG + chr1_4:10669162-10669181 Msa0149810:intron 20.0%
!! TAAGAAATATTGTTAGTAGT+TGG - chr1_4:10669274-10669293 None:intergenic 20.0%
!! AATATTCTGTTATAAAAGGA+GGG - chr1_4:10669318-10669337 None:intergenic 20.0%
!! AAGGAATATTCTGTTATAAA+AGG - chr1_4:10669322-10669341 None:intergenic 20.0%
!!! ATTCCTTAAAGTTTTAAACA+TGG + chr1_4:10669335-10669354 Msa0149810:intron 20.0%
!!! TTCCTTAAAGTTTTAAACAT+GGG + chr1_4:10669336-10669355 Msa0149810:intron 20.0%
!!! TATTTCTATTTGATAATAGG+TGG + chr1_4:10669397-10669416 Msa0149810:intron 20.0%
!! AAATCATGGTTAGATTAATT+TGG + chr1_4:10669620-10669639 Msa0149810:intron 20.0%
!! AATGGAAAAATCAAATACAA+GGG - chr1_4:10670417-10670436 None:intergenic 20.0%
!! TAATGGAAAAATCAAATACA+AGG - chr1_4:10670418-10670437 None:intergenic 20.0%
!! ATGTATCCTAAACAAAATAA+TGG - chr1_4:10670435-10670454 None:intergenic 20.0%
!!! CTTTTCATTTGTTTATTTTC+TGG - chr1_4:10670472-10670491 None:intergenic 20.0%
!! CAGAAAATAAACAAATGAAA+AGG + chr1_4:10670470-10670489 Msa0149810:CDS 20.0%
!!! TTTGGCAAGAAATTTTTTTT+TGG - chr1_4:10670785-10670804 None:intergenic 20.0%
!! ATTTAGGTATTAAATTTAGC+TGG + chr1_4:10670900-10670919 Msa0149810:intron 20.0%
!!! TAATATTTTATTACAGGTCA+TGG + chr1_4:10671106-10671125 Msa0149810:intron 20.0%
!!! TTGGTTTATGAATTTTGAAT+CGG - chr1_4:10671180-10671199 None:intergenic 20.0%
!! TACAAAGACAATTTAAAAGT+TGG - chr1_4:10671436-10671455 None:intergenic 20.0%
!!! ACTTTTAAATTGTCTTTGTA+TGG + chr1_4:10671436-10671455 Msa0149810:CDS 20.0%
! TATTACACAAACTCTAATCA+TGG + chr1_4:10667731-10667750 Msa0149810:CDS 25.0%
!! AGTTGAGAATAAAAAGCATA+AGG - chr1_4:10667845-10667864 None:intergenic 25.0%
! TTTCTGTGAGTTTACAATAA+TGG + chr1_4:10667935-10667954 Msa0149810:intron 25.0%
! ATCAAACATGTTATTGATGT+TGG - chr1_4:10668008-10668027 None:intergenic 25.0%
! GTGACAAAAATTGATTGATT+TGG + chr1_4:10668034-10668053 Msa0149810:intron 25.0%
! ATGTTCATTGAATAATGTTC+CGG + chr1_4:10668129-10668148 Msa0149810:intron 25.0%
! ATGTAAAGTAATTTATGCTC+CGG - chr1_4:10668151-10668170 None:intergenic 25.0%
! AACTACTCAACACTATTTAA+TGG + chr1_4:10668173-10668192 Msa0149810:intron 25.0%
!!! TGGAATTTTGGTTTCAATTT+TGG - chr1_4:10668358-10668377 None:intergenic 25.0%
!!! TAGTTGCTTTTAAAACTTTC+GGG - chr1_4:10668389-10668408 None:intergenic 25.0%
!! TGTTACTGTGTAAATTTTCA+TGG + chr1_4:10668475-10668494 Msa0149810:intron 25.0%
! ATGTTAAGGTTTCTACAAAT+AGG + chr1_4:10668525-10668544 Msa0149810:intron 25.0%
! CAAAGATGAAAATTATGCAT+TGG - chr1_4:10668609-10668628 None:intergenic 25.0%
! ATATCATAACAGTTGTAGTA+GGG + chr1_4:10668754-10668773 Msa0149810:CDS 25.0%
! ATCAATTCTTGAAGAGTAAA+GGG - chr1_4:10669067-10669086 None:intergenic 25.0%
! AATATTGTTAGTAGTTGGTT+AGG - chr1_4:10669269-10669288 None:intergenic 25.0%
! ATATTCTGTTATAAAAGGAG+GGG - chr1_4:10669317-10669336 None:intergenic 25.0%
! GAATATTCTGTTATAAAAGG+AGG - chr1_4:10669319-10669338 None:intergenic 25.0%
!! AACCCATGTTTAAAACTTTA+AGG - chr1_4:10669341-10669360 None:intergenic 25.0%
!!! ATTTGTGGATTGATTTTGTA+TGG + chr1_4:10669433-10669452 Msa0149810:CDS 25.0%
!! GTTAGATTAATTTGGTAAGT+AGG + chr1_4:10669628-10669647 Msa0149810:intron 25.0%
! AATCAACTACACAATAAAGT+TGG - chr1_4:10670047-10670066 None:intergenic 25.0%
!!! AATTTTCTGTATTAGTCTTG+CGG - chr1_4:10670075-10670094 None:intergenic 25.0%
!! CTATGAATTCGTATTTTCTA+CGG - chr1_4:10670133-10670152 None:intergenic 25.0%
!! TACTGTTATTTACGACATAA+TGG + chr1_4:10670314-10670333 Msa0149810:CDS 25.0%
!!! TTCATTTGTTTATTTTCTGG+TGG - chr1_4:10670469-10670488 None:intergenic 25.0%
! AATCCAAAAAAAATGTTTCC+TGG - chr1_4:10670580-10670599 None:intergenic 25.0%
! TCAAGATAGGGAAATTAATT+CGG - chr1_4:10670756-10670775 None:intergenic 25.0%
! AAATACGATGATATGACAAA+AGG - chr1_4:10670959-10670978 None:intergenic 25.0%
!! TGGTTTATGAATTTTGAATC+GGG - chr1_4:10671179-10671198 None:intergenic 25.0%
!! CAATCAATTTGAACTTGTTT+AGG + chr1_4:10671228-10671247 Msa0149810:CDS 25.0%
!! TGAACTTGTTTAGGTTAATT+TGG + chr1_4:10671237-10671256 Msa0149810:CDS 25.0%
! GCTAGAAATTGATTGAAAAA+TGG - chr1_4:10671308-10671327 None:intergenic 25.0%
! GCATCTTTAAATTTGTAATC+AGG + chr1_4:10671544-10671563 Msa0149810:exon 25.0%
!!! ACTTTATCCAAGGTTTTATT+TGG + chr1_4:10671690-10671709 Msa0149810:three_prime_UTR 25.0%
!! TATTTCTTTAGAGATAGTGT+TGG + chr1_4:10671745-10671764 Msa0149810:three_prime_UTR 25.0%
TCATGAATGATATAGATGGA+TGG - chr1_4:10667591-10667610 None:intergenic 30.0%
ACACTCATGAATGATATAGA+TGG - chr1_4:10667595-10667614 None:intergenic 30.0%
!!! TCTTTCTCTCCTATCTTTTT+TGG + chr1_4:10667620-10667639 Msa0149810:five_prime_UTR 30.0%
ATTTAGTTATCTGAGTAAGC+CGG - chr1_4:10667677-10667696 None:intergenic 30.0%
AAACATGTTATTGATGTTGG+CGG - chr1_4:10668005-10668024 None:intergenic 30.0%
CAATAACATGTTTGATTCTG+CGG + chr1_4:10668012-10668031 Msa0149810:intron 30.0%
CTATTTAATGGTTAGAGACT+TGG + chr1_4:10668185-10668204 Msa0149810:intron 30.0%
ATTTCTGTTGGGAAATTTGT+TGG - chr1_4:10668272-10668291 None:intergenic 30.0%
CACGTTAACTAATTTCTGTT+GGG - chr1_4:10668283-10668302 None:intergenic 30.0%
TCACGTTAACTAATTTCTGT+TGG - chr1_4:10668284-10668303 None:intergenic 30.0%
!! ATAGTTGAGCTTCTTTTTCA+TGG + chr1_4:10668325-10668344 Msa0149810:intron 30.0%
! AAAACTTTCGGGTATTTGTA+TGG - chr1_4:10668378-10668397 None:intergenic 30.0%
CAATCCTGTGAGAAATAAAT+TGG + chr1_4:10668575-10668594 Msa0149810:intron 30.0%
!! TGTTCTAAGAGCACATATTA+AGG - chr1_4:10668635-10668654 None:intergenic 30.0%
CATATCATAACAGTTGTAGT+AGG + chr1_4:10668753-10668772 Msa0149810:CDS 30.0%
TATCATAACAGTTGTAGTAG+GGG + chr1_4:10668755-10668774 Msa0149810:CDS 30.0%
ACTGTAAGTGAAAATAGAGA+TGG - chr1_4:10668859-10668878 None:intergenic 30.0%
! AATTTCTTTTGCCAGTGATT+GGG - chr1_4:10668911-10668930 None:intergenic 30.0%
! TAATTTCTTTTGCCAGTGAT+TGG - chr1_4:10668912-10668931 None:intergenic 30.0%
!!! TGATACATATTTTAGCAACG+AGG + chr1_4:10669028-10669047 Msa0149810:intron 30.0%
!!! GATACATATTTTAGCAACGA+GGG + chr1_4:10669029-10669048 Msa0149810:intron 30.0%
TCAATTCTTGAAGAGTAAAG+GGG - chr1_4:10669066-10669085 None:intergenic 30.0%
CATCAATTCTTGAAGAGTAA+AGG - chr1_4:10669068-10669087 None:intergenic 30.0%
CTTTACTCTTCAAGAATTGA+TGG + chr1_4:10669066-10669085 Msa0149810:intron 30.0%
GTTTCTCTCAGATTAAAACT+TGG - chr1_4:10669243-10669262 None:intergenic 30.0%
TCTTATAATCCCTACATGAT+CGG + chr1_4:10669818-10669837 Msa0149810:CDS 30.0%
AATGAATACATAACCAAACG+AGG - chr1_4:10669924-10669943 None:intergenic 30.0%
!!! GTCTAATTACAAAGGCATTT+TGG + chr1_4:10670163-10670182 Msa0149810:intron 30.0%
GCAATTATGTAGTAACAAGT+TGG + chr1_4:10670376-10670395 Msa0149810:intron 30.0%
!!! ACACCAGGAAACATTTTTTT+TGG + chr1_4:10670574-10670593 Msa0149810:CDS 30.0%
TACTATGAATACTTCTCCAA+GGG - chr1_4:10670626-10670645 None:intergenic 30.0%
TTACTATGAATACTTCTCCA+AGG - chr1_4:10670627-10670646 None:intergenic 30.0%
TTCATAGTAATCCACATGAT+TGG + chr1_4:10670637-10670656 Msa0149810:CDS 30.0%
! TTTTGGCAAGAATCAAGATA+GGG - chr1_4:10670768-10670787 None:intergenic 30.0%
!! TTTTTGGCAAGAATCAAGAT+AGG - chr1_4:10670769-10670788 None:intergenic 30.0%
ACTTGTAGAAATACCTATCA+TGG - chr1_4:10670818-10670837 None:intergenic 30.0%
!! AATCAATTTCTAGCTCTGTT+GGG + chr1_4:10671314-10671333 Msa0149810:CDS 30.0%
GAGCAATATGCATTTGTATA+GGG - chr1_4:10671373-10671392 None:intergenic 30.0%
TGAGCAATATGCATTTGTAT+AGG - chr1_4:10671374-10671393 None:intergenic 30.0%
!!! TTATCCAAGGTTTTATTTGG+TGG + chr1_4:10671693-10671712 Msa0149810:three_prime_UTR 30.0%
!!! TATCCAAGGTTTTATTTGGT+GGG + chr1_4:10671694-10671713 Msa0149810:three_prime_UTR 30.0%
!! TATTTGGGGTAGTTGTTTTC+CGG - chr1_4:10667652-10667671 None:intergenic 35.0%
AACAACTACCCCAAATAAAC+CGG + chr1_4:10667655-10667674 Msa0149810:five_prime_UTR 35.0%
ATCATGGAACAAGATGATGA+TGG + chr1_4:10667747-10667766 Msa0149810:CDS 35.0%
! AAGGTACATACCAGTTCTTT+TGG - chr1_4:10667778-10667797 None:intergenic 35.0%
AACATGTTATTGATGTTGGC+GGG - chr1_4:10668004-10668023 None:intergenic 35.0%
! TTTTCTTGATACGCAAGAGT+CGG - chr1_4:10668239-10668258 None:intergenic 35.0%
! CGGGTATTTGTATGGAATTT+TGG - chr1_4:10668370-10668389 None:intergenic 35.0%
CAGTAACACACATCATTAGA+CGG - chr1_4:10668463-10668482 None:intergenic 35.0%
TCATGCTAACTTATGTCCTT+AGG + chr1_4:10668498-10668517 Msa0149810:intron 35.0%
CATGCTAACTTATGTCCTTA+GGG + chr1_4:10668499-10668518 Msa0149810:intron 35.0%
AAACCTTAACATGTTCCCTA+AGG - chr1_4:10668517-10668536 None:intergenic 35.0%
! TGTGCCAATTTATTTCTCAC+AGG - chr1_4:10668582-10668601 None:intergenic 35.0%
!! TATTTGGTGTGCAATATTGC+AGG + chr1_4:10668708-10668727 Msa0149810:intron 35.0%
!! ATTTGGTGTGCAATATTGCA+GGG + chr1_4:10668709-10668728 Msa0149810:intron 35.0%
TTATAAAAGGAGGGGAAAAG+TGG - chr1_4:10669309-10669328 None:intergenic 35.0%
! ATTTTGTATGGAAAGCTTGC+TGG + chr1_4:10669445-10669464 Msa0149810:CDS 35.0%
!! TTTTGTATGGAAAGCTTGCT+GGG + chr1_4:10669446-10669465 Msa0149810:CDS 35.0%
GTTGTTTGCATCCATAGAAA+AGG + chr1_4:10669773-10669792 Msa0149810:intron 35.0%
CATGTCAGTTTGTGAAAGTT+GGG - chr1_4:10669878-10669897 None:intergenic 35.0%
GGTTATGTATTCATTGCAGT+TGG + chr1_4:10669929-10669948 Msa0149810:CDS 35.0%
AGATAAGGACAGTAAGACAA+AGG - chr1_4:10669955-10669974 None:intergenic 35.0%
TCAACAAACTACCTGAGATA+AGG - chr1_4:10669970-10669989 None:intergenic 35.0%
! CACAATAAAGTTGGTTGTAG+AGG - chr1_4:10670038-10670057 None:intergenic 35.0%
AAAAAATGTTTCCTGGTGTG+TGG - chr1_4:10670573-10670592 None:intergenic 35.0%
! TTGGATTTTATGAGCCCTAT+TGG + chr1_4:10670593-10670612 Msa0149810:CDS 35.0%
ATTTCAACGACGCGAAAAAA+TGG - chr1_4:10671137-10671156 None:intergenic 35.0%
!!! ATTTTTTCGCGTCGTTGAAA+TGG + chr1_4:10671136-10671155 Msa0149810:CDS 35.0%
!!! TTTTTTCGCGTCGTTGAAAT+GGG + chr1_4:10671137-10671156 Msa0149810:CDS 35.0%
GCACGTTAAATGAATAGTCT+TGG - chr1_4:10671199-10671218 None:intergenic 35.0%
ATTGAAAAATGGCATTGCCA+TGG - chr1_4:10671297-10671316 None:intergenic 35.0%
!! CAATCAATTTCTAGCTCTGT+TGG + chr1_4:10671313-10671332 Msa0149810:CDS 35.0%
ATAGGGAAGAACACAACTAA+TGG - chr1_4:10671356-10671375 None:intergenic 35.0%
TCTTTGTATGGTTGTCTCAT+TGG + chr1_4:10671448-10671467 Msa0149810:CDS 35.0%
!! TTCCTTTGTCACTTTATCCA+AGG + chr1_4:10671680-10671699 Msa0149810:three_prime_UTR 35.0%
AACCTTGGATAAAGTGACAA+AGG - chr1_4:10671685-10671704 None:intergenic 35.0%
AATCCCACCAAATAAAACCT+TGG - chr1_4:10671700-10671719 None:intergenic 35.0%
!!! CTATCTTTTTTGGCAGTGAC+CGG + chr1_4:10667630-10667649 Msa0149810:five_prime_UTR 40.0%
! TGAGTAAGCCGGTTTATTTG+GGG - chr1_4:10667666-10667685 None:intergenic 40.0%
! CTGAGTAAGCCGGTTTATTT+GGG - chr1_4:10667667-10667686 None:intergenic 40.0%
! TCTGAGTAAGCCGGTTTATT+TGG - chr1_4:10667668-10667687 None:intergenic 40.0%
GATGGTAAAGCCAAAAGAAC+TGG + chr1_4:10667765-10667784 Msa0149810:CDS 40.0%
TGGACACTTAAGCAATTCGT+AGG + chr1_4:10668205-10668224 Msa0149810:intron 40.0%
TGTCCTTAGGGAACATGTTA+AGG + chr1_4:10668511-10668530 Msa0149810:intron 40.0%
GTCTTGTAGCTGATTGCTAT+AGG + chr1_4:10668877-10668896 Msa0149810:CDS 40.0%
TAGAACAGGGCAAAATTCAG+TGG - chr1_4:10669002-10669021 None:intergenic 40.0%
!!! ACATATTTTAGCAACGAGGG+CGG + chr1_4:10669032-10669051 Msa0149810:intron 40.0%
! CAGCTTCAAGTCCTTTTCTA+TGG - chr1_4:10669787-10669806 None:intergenic 40.0%
!! AATCCCTACATGATCGGTTT+TGG + chr1_4:10669824-10669843 Msa0149810:CDS 40.0%
!! ATCCCTACATGATCGGTTTT+GGG + chr1_4:10669825-10669844 Msa0149810:CDS 40.0%
ATCCCAAAACCGATCATGTA+GGG - chr1_4:10669830-10669849 None:intergenic 40.0%
TATCCCAAAACCGATCATGT+AGG - chr1_4:10669831-10669850 None:intergenic 40.0%
CCATGTCAGTTTGTGAAAGT+TGG - chr1_4:10669879-10669898 None:intergenic 40.0%
CCAACTTTCACAAACTGACA+TGG + chr1_4:10669876-10669895 Msa0149810:CDS 40.0%
ATAACCAAACGAGGTGATAG+CGG - chr1_4:10669915-10669934 None:intergenic 40.0%
TGTCTTACTGTCCTTATCTC+AGG + chr1_4:10669956-10669975 Msa0149810:CDS 40.0%
!! TTTTGGCTAAGAGCAGGAAA+AGG + chr1_4:10670180-10670199 Msa0149810:intron 40.0%
TTTGGCTAAGAGCAGGAAAA+GGG + chr1_4:10670181-10670200 Msa0149810:intron 40.0%
AGCATAACCGGAACACAAAT+AGG + chr1_4:10670213-10670232 Msa0149810:CDS 40.0%
GCATAACCGGAACACAAATA+GGG + chr1_4:10670214-10670233 Msa0149810:CDS 40.0%
! TTTTCTGCAGCAGTTAGTTC+CGG - chr1_4:10670240-10670259 None:intergenic 40.0%
TAACTGCTGCAGAAAAAGTG+TGG + chr1_4:10670244-10670263 Msa0149810:CDS 40.0%
AAATGGGTGCTAATATCGTG+TGG + chr1_4:10671153-10671172 Msa0149810:CDS 40.0%
GACTATTCATTTAACGTGCG+TGG + chr1_4:10671200-10671219 Msa0149810:CDS 40.0%
AATAGCAACCATTCTTGCCA+TGG + chr1_4:10671277-10671296 Msa0149810:CDS 40.0%
ACACCACCTCAATGATAACA+CGG - chr1_4:10671408-10671427 None:intergenic 40.0%
CGGTCACTGCCAAAAAAGAT+AGG - chr1_4:10667632-10667651 None:intergenic 45.0%
GCAATATTGCAGGGAATGTG+TGG + chr1_4:10668718-10668737 Msa0149810:intron 45.0%
ATAACAGTTGTAGTAGGGGC+AGG + chr1_4:10668759-10668778 Msa0149810:CDS 45.0%
TAACAGTTGTAGTAGGGGCA+GGG + chr1_4:10668760-10668779 Msa0149810:CDS 45.0%
ACCAGCTATCCATCCTAGTT+GGG - chr1_4:10668811-10668830 None:intergenic 45.0%
TACCAGCTATCCATCCTAGT+TGG - chr1_4:10668812-10668831 None:intergenic 45.0%
CTAGGATGGATAGCTGGTAT+AGG + chr1_4:10668813-10668832 Msa0149810:CDS 45.0%
CAAGCTGTCAAGAGCTACTT+AGG + chr1_4:10668942-10668961 Msa0149810:CDS 45.0%
!!! CATATTTTAGCAACGAGGGC+GGG + chr1_4:10669033-10669052 Msa0149810:intron 45.0%
GGAACGATGCAAGTGATTTG+TGG + chr1_4:10669418-10669437 Msa0149810:CDS 45.0%
!! AAAGCTTGCTGGGATAACAG+TGG + chr1_4:10669456-10669475 Msa0149810:CDS 45.0%
!! AAGCTTGCTGGGATAACAGT+GGG + chr1_4:10669457-10669476 Msa0149810:CDS 45.0%
!!! AAGGCATTTTGGCTAAGAGC+AGG + chr1_4:10670174-10670193 Msa0149810:intron 45.0%
TTGGCTAAGAGCAGGAAAAG+GGG + chr1_4:10670182-10670201 Msa0149810:intron 45.0%
TGGCGTGTTTGCACTTCAAT+GGG + chr1_4:10670264-10670283 Msa0149810:CDS 45.0%
ATGAAAAGGGCCAATGTGAC+AGG + chr1_4:10670484-10670503 Msa0149810:CDS 45.0%
TGAAAAGGGCCAATGTGACA+GGG + chr1_4:10670485-10670504 Msa0149810:CDS 45.0%
CATTGATACCCCTGTCACAT+TGG - chr1_4:10670497-10670516 None:intergenic 45.0%
TTCCTGCTATGTAGTTGCCT+TGG + chr1_4:10670529-10670548 Msa0149810:CDS 45.0%
CCAAGGGCAACTATCCAATA+GGG - chr1_4:10670610-10670629 None:intergenic 45.0%
TCCAAGGGCAACTATCCAAT+AGG - chr1_4:10670611-10670630 None:intergenic 45.0%
CCTGATATGCTCCAATCATG+TGG - chr1_4:10670651-10670670 None:intergenic 45.0%
CCACATGATTGGAGCATATC+AGG + chr1_4:10670648-10670667 Msa0149810:CDS 45.0%
CTGTTGGGAGCAATTGGATT+TGG + chr1_4:10671329-10671348 Msa0149810:CDS 45.0%
GCATACCCGTGTTATCATTG+AGG + chr1_4:10671399-10671418 Msa0149810:CDS 45.0%
TACCCGTGTTATCATTGAGG+TGG + chr1_4:10671402-10671421 Msa0149810:CDS 45.0%
CACCACCTCAATGATAACAC+GGG - chr1_4:10671407-10671426 None:intergenic 45.0%
!! TAAAATATTATTTGATATAT+TGG + chr1_4:10670850-10670869 Msa0149810:intron 5.0%
!!! ATAATTTAATATTTTATTAC+AGG + chr1_4:10671100-10671119 Msa0149810:intron 5.0%
AACAGTTGTAGTAGGGGCAG+GGG + chr1_4:10668761-10668780 Msa0149810:CDS 50.0%
TATCCATCCTAGTTGGGCCA+TGG - chr1_4:10668805-10668824 None:intergenic 50.0%
AGGTTTCCAGACCCAATCAC+TGG + chr1_4:10668897-10668916 Msa0149810:CDS 50.0%
! CTTTTGCCAGTGATTGGGTC+TGG - chr1_4:10668906-10668925 None:intergenic 50.0%
GGAGCTCAAGAGCTCTACAA+TGG + chr1_4:10669183-10669202 Msa0149810:intron 50.0%
!! AAACGAGGTGATAGCGGCAA+TGG - chr1_4:10669909-10669928 None:intergenic 50.0%
ATTGCCGCTATCACCTCGTT+TGG + chr1_4:10669908-10669927 Msa0149810:CDS 50.0%
! GGGGCATCTACTAGCATAAC+CGG + chr1_4:10670201-10670220 Msa0149810:CDS 50.0%
AACCGGAACACAAATAGGGC+CGG + chr1_4:10670218-10670237 Msa0149810:CDS 50.0%
TTCCGGCCCTATTTGTGTTC+CGG - chr1_4:10670223-10670242 None:intergenic 50.0%
GTGGCGTGTTTGCACTTCAA+TGG + chr1_4:10670263-10670282 Msa0149810:CDS 50.0%
GAAAAGGGCCAATGTGACAG+GGG + chr1_4:10670486-10670505 Msa0149810:CDS 50.0%
AGCCAAGGCAACTACATAGC+AGG - chr1_4:10670534-10670553 None:intergenic 50.0%
!!! TGCCTTGGCTATGCTGCTTT+TGG + chr1_4:10670544-10670563 Msa0149810:CDS 50.0%
CACCAAAAGCAGCATAGCCA+AGG - chr1_4:10670549-10670568 None:intergenic 50.0%
CCCTATTGGATAGTTGCCCT+TGG + chr1_4:10670607-10670626 Msa0149810:CDS 50.0%
TGGCATTGCCATGGCAAGAA+TGG - chr1_4:10671288-10671307 None:intergenic 50.0%
!! CTAGCTCTGTTGGGAGCAAT+TGG + chr1_4:10671323-10671342 Msa0149810:CDS 50.0%
! TTGGCGGGCAGAACTGATGA+AGG - chr1_4:10667989-10668008 None:intergenic 55.0%
!! AGGGGTGTTGGCTCTAGCAT+GGG + chr1_4:10668779-10668798 Msa0149810:CDS 55.0%
GCCCAACTAGGATGGATAGC+TGG + chr1_4:10668807-10668826 Msa0149810:CDS 55.0%
!! ATTTTAGCAACGAGGGCGGG+CGG + chr1_4:10669036-10669055 Msa0149810:intron 55.0%
!! GCTTTTGGTGACCACACACC+AGG + chr1_4:10670559-10670578 Msa0149810:CDS 55.0%
! TGTAGTAGGGGCAGGGGTGT+TGG + chr1_4:10668767-10668786 Msa0149810:CDS 60.0%
!! CAGGGGTGTTGGCTCTAGCA+TGG + chr1_4:10668778-10668797 Msa0149810:CDS 60.0%
!! GTTGGCTCTAGCATGGGCCA+TGG + chr1_4:10668785-10668804 Msa0149810:CDS 60.0%
GCATGGGCCATGGCCCAACT+AGG + chr1_4:10668795-10668814 Msa0149810:CDS 65.0%
GGGCCATGGCCCAACTAGGA+TGG + chr1_4:10668799-10668818 Msa0149810:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10667519 10671805 10667519 ID=Msa0149810;Name=Msa0149810
chr1_4 mRNA 10667519 10671805 10667519 ID=Msa0149810-mRNA-1;Parent=Msa0149810;Name=Msa0149810-mRNA-1;_AED=0.26;_eAED=0.26;_QI=207|0.83|0.85|1|1|1|7|261|453
chr1_4 exon 10667519 10667786 10667519 ID=Msa0149810-mRNA-1:exon:4521;Parent=Msa0149810-mRNA-1
chr1_4 exon 10668730 10668963 10668730 ID=Msa0149810-mRNA-1:exon:4522;Parent=Msa0149810-mRNA-1
chr1_4 exon 10669416 10669509 10669416 ID=Msa0149810-mRNA-1:exon:4523;Parent=Msa0149810-mRNA-1
chr1_4 exon 10669790 10669977 10669790 ID=Msa0149810-mRNA-1:exon:4524;Parent=Msa0149810-mRNA-1
chr1_4 exon 10670196 10670335 10670196 ID=Msa0149810-mRNA-1:exon:4525;Parent=Msa0149810-mRNA-1
chr1_4 exon 10670448 10670669 10670448 ID=Msa0149810-mRNA-1:exon:4526;Parent=Msa0149810-mRNA-1
chr1_4 exon 10671122 10671805 10671122 ID=Msa0149810-mRNA-1:exon:4527;Parent=Msa0149810-mRNA-1
chr1_4 five_prime_UTR 10667519 10667725 10667519 ID=Msa0149810-mRNA-1:five_prime_utr;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10667726 10667786 10667726 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10668730 10668963 10668730 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10669416 10669509 10669416 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10669790 10669977 10669790 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10670196 10670335 10670196 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10670448 10670669 10670448 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 CDS 10671122 10671544 10671122 ID=Msa0149810-mRNA-1:cds;Parent=Msa0149810-mRNA-1
chr1_4 three_prime_UTR 10671545 10671805 10671545 ID=Msa0149810-mRNA-1:three_prime_utr;Parent=Msa0149810-mRNA-1
Gene Sequence

>Msa0149810

ATGAGTATTACACAAACTCTAATCATGGAACAAGATGATGATGGTAAAGCCAAAAGAACTGGGAATGTGTGGACTGCAACAACACATATCATAACAGTTGTAGTAGGGGCAGGGGTGTTGGCTCTAGCATGGGCCATGGCCCAACTAGGATGGATAGCTGGTATAGGCAGTATAGTACTCTTTGCATCCATCTCTATTTTCACTTACAGTCTTGTAGCTGATTGCTATAGGTTTCCAGACCCAATCACTGGCAAAAGAAATTATACTTACATGCAAGCTGTCAAGAGCTACTTAGGTGGAACGATGCAAGTGATTTGTGGATTGATTTTGTATGGAAAGCTTGCTGGGATAACAGTGGGCTACACAATAACTTCATCGACAAGCTTAGCAAAAGGACTTGAAGCTGATTGCAGCACTTCTTATAATCCCTACATGATCGGTTTTGGGATATTGCAGATTTTCTTGTCTCAAATTCCCAACTTTCACAAACTGACATGGATCTCAACCATTGCCGCTATCACCTCGTTTGGTTATGTATTCATTGCAGTTGGCCTTTGTCTTACTGTCCTTATCTCAGGAAAAGGGGCATCTACTAGCATAACCGGAACACAAATAGGGCCGGAACTAACTGCTGCAGAAAAAGTGTGGCGTGTTTGCACTTCAATGGGAAACATAGCTCTTGCTAGCACTTATGCTACTGTTATTTACGACATAATGGATACATTAAAGTCACATCCACCAGAAAATAAACAAATGAAAAGGGCCAATGTGACAGGGGTATCAATGATGACAATGATATTCCTGCTATGTAGTTGCCTTGGCTATGCTGCTTTTGGTGACCACACACCAGGAAACATTTTTTTTGGATTTTATGAGCCCTATTGGATAGTTGCCCTTGGAGAAGTATTCATAGTAATCCACATGATTGGAGCATATCAGGTCATGGCACAACCATTTTTTCGCGTCGTTGAAATGGGTGCTAATATCGTGTGGCCCGATTCAAAATTCATAAACCAAGACTATTCATTTAACGTGCGTGGTGCAACAATCAATTTGAACTTGTTTAGGTTAATTTGGAGAACGATCTTTGTGATAATAGCAACCATTCTTGCCATGGCAATGCCATTTTTCAATCAATTTCTAGCTCTGTTGGGAGCAATTGGATTTGGTCCATTAGTTGTGTTCTTCCCTATACAAATGCATATTGCTCAGAAGCGCATACCCGTGTTATCATTGAGGTGGTGTGCACTCCAACTTTTAAATTGTCTTTGTATGGTTGTCTCATTGGCTGCTGTAGTTGCTTCAGTTCATGAAATTAGCGAAAATATTCACAAATACAAGATTTTTGCTTATAAACAATAG
Protein sequence

>Msa0149810

MSITQTLIMEQDDDGKAKRTGNVWTATTHIITVVVGAGVLALAWAMAQLGWIAGIGSIVLFASISIFTYSLVADCYRFPDPITGKRNYTYMQAVKSYLGGTMQVICGLILYGKLAGITVGYTITSSTSLAKGLEADCSTSYNPYMIGFGILQIFLSQIPNFHKLTWISTIAAITSFGYVFIAVGLCLTVLISGKGASTSITGTQIGPELTAAEKVWRVCTSMGNIALASTYATVIYDIMDTLKSHPPENKQMKRANVTGVSMMTMIFLLCSCLGYAAFGDHTPGNIFFGFYEPYWIVALGEVFIVIHMIGAYQVMAQPFFRVVEMGANIVWPDSKFINQDYSFNVRGATINLNLFRLIWRTIFVIIATILAMAMPFFNQFLALLGAIGFGPLVVFFPIQMHIAQKRIPVLSLRWCALQLLNCLCMVVSLAAVVASVHEISENIHKYKIFAYKQ*