AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010260 MtrunA17_Chr3g0125141 55.556 63 27 1 42 103 1 63 1.18e-15 66.2
Msa0010260 MtrunA17_Chr1g0197101 71.111 45 9 1 9 53 55 95 2.38e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCCAAATAATTGAAATTT+TGG 0.047025 1_1:-15400466 None:intergenic
ATCCCAAAATTTCAATTATT+TGG 0.074593 1_1:+15400463 Msa0010260:five_prime_UTR
GTTTATTTCATTCGGAAAAT+TGG 0.104151 1_1:+15404122 Msa0010260:three_prime_UTR
CTACAACTCAATTGAAATTC+TGG 0.219729 1_1:+15403659 Msa0010260:three_prime_UTR
AAGACTCAGGGATGTCTTTA+TGG 0.246681 1_1:+15403700 Msa0010260:three_prime_UTR
CAGAATTTCAATTGAGTTGT+AGG 0.259880 1_1:-15403658 None:intergenic
GCTAATAAGCGCACACGATT+TGG 0.265270 1_1:+15403897 Msa0010260:three_prime_UTR
CAAGGCTGCTGTGATTATAT+TGG 0.287750 1_1:+15401554 Msa0010260:CDS
AGATTAGGACACATTCTATT+AGG 0.291663 1_1:+15401502 Msa0010260:intron
ATTTCTGTCAATAGGAGTTT+TGG 0.293765 1_1:-15400500 None:intergenic
TTTATTTCATTCGGAAAATT+GGG 0.295943 1_1:+15404123 Msa0010260:three_prime_UTR
GATGCAGGGCAGCTGGATAC+AGG 0.334750 1_1:+15403533 Msa0010260:CDS
AAATTCTGGGCTGAATTGGC+TGG 0.336987 1_1:+15403673 Msa0010260:three_prime_UTR
CTGTTCTGAGTGAATAAAAT+AGG 0.339761 1_1:-15400546 None:intergenic
TCTTTATGGTACTTGTGATA+TGG 0.350156 1_1:+15403714 Msa0010260:three_prime_UTR
GGATGCAGGGGACGAGATGC+AGG 0.353260 1_1:+15403518 Msa0010260:CDS
TCTTGAGTAGGAAACATATA+AGG 0.375208 1_1:+15403587 Msa0010260:three_prime_UTR
GCAGAAACTTGGCTACTATA+TGG 0.376503 1_1:-15403789 None:intergenic
ATATTAATGTTTATTTCATT+CGG 0.380924 1_1:+15404114 Msa0010260:three_prime_UTR
AATGAAGGGGAGCGGGATGC+AGG 0.385018 1_1:+15403504 Msa0010260:CDS
ACGATGTCGGCCACCCTTGA+TGG 0.396044 1_1:-15403954 None:intergenic
ATTGAAATTCTGGGCTGAAT+TGG 0.403644 1_1:+15403669 Msa0010260:three_prime_UTR
TTGTGAGAAAAGAGAACAAA+TGG 0.414854 1_1:+15400740 Msa0010260:exon
GGAAACATATAAGGAGAAGA+TGG 0.415058 1_1:+15403596 Msa0010260:three_prime_UTR
GAATGATATGGTTGGGCAAT+CGG 0.416206 1_1:-15400613 None:intergenic
GGGACGAGATGCAGGGCAGC+TGG 0.421743 1_1:+15403526 Msa0010260:CDS
TACAACTCAATTGAAATTCT+GGG 0.437150 1_1:+15403660 Msa0010260:three_prime_UTR
GATCGAAGAAAAGAATGATA+TGG 0.443057 1_1:-15400625 None:intergenic
TTTCAGGATTCTCGTGAGAA+AGG 0.449070 1_1:+15400713 Msa0010260:five_prime_UTR
AGAAGGAAGGCATCTGATAA+TGG 0.449114 1_1:+15403619 Msa0010260:three_prime_UTR
ATGGAGATACATGCGACTGC+TGG 0.450706 1_1:-15403770 None:intergenic
CTGCCATCTGTGCAGCAATC+CGG 0.458112 1_1:-15403811 None:intergenic
GAATATTGATGAGACTTTCA+AGG 0.458436 1_1:+15401536 Msa0010260:CDS
AAGAAAAGAATGATATGGTT+GGG 0.460323 1_1:-15400620 None:intergenic
CTGCCGGATTGCTGCACAGA+TGG 0.465200 1_1:+15403808 Msa0010260:three_prime_UTR
ATGGCAAAGCGCTACAAGCC+AGG 0.468440 1_1:+15403733 Msa0010260:three_prime_UTR
GGAGTGACAACGGAAGGAAT+TGG 0.468989 1_1:+15403918 Msa0010260:three_prime_UTR
AATTCTGGGCTGAATTGGCT+GGG 0.469850 1_1:+15403674 Msa0010260:three_prime_UTR
TCTGTGGACCTTTGACCTTA+CGG 0.478369 1_1:-15403356 None:intergenic
TCAGAGATGTCATCATAGTC+TGG 0.479204 1_1:-15403983 None:intergenic
TTCAGGATTCTCGTGAGAAA+GGG 0.487517 1_1:+15400714 Msa0010260:five_prime_UTR
GCAGCAATCCGGCAGAAACT+TGG 0.488047 1_1:-15403800 None:intergenic
GATGTAAATCAGATGAATGA+AGG 0.491907 1_1:+15403489 Msa0010260:CDS
CTGGGTAGGGATGATGCACC+TGG 0.492746 1_1:-15403751 None:intergenic
TCACTTTGATCAATATCGTC+AGG 0.494553 1_1:+15401578 Msa0010260:CDS
TGAAGGGGAGCGGGATGCAG+GGG 0.501360 1_1:+15403506 Msa0010260:CDS
CTGAGTGTTACTTCCATCAA+GGG 0.514566 1_1:+15403941 Msa0010260:three_prime_UTR
GCTGAGTGTTACTTCCATCA+AGG 0.518355 1_1:+15403940 Msa0010260:three_prime_UTR
GAAGAAAAGAATGATATGGT+TGG 0.522034 1_1:-15400621 None:intergenic
AATAACTTTCATAACTGCAA+TGG 0.524765 1_1:-15404178 None:intergenic
TCAGATGAATGAAGGGGAGC+GGG 0.530853 1_1:+15403497 Msa0010260:CDS
ATGAAGGGGAGCGGGATGCA+GGG 0.531337 1_1:+15403505 Msa0010260:CDS
TGGAGATACATGCGACTGCT+GGG 0.532764 1_1:-15403769 None:intergenic
AAGGAGAAGATGGAGAAGGA+AGG 0.533403 1_1:+15403606 Msa0010260:three_prime_UTR
GTCGCTTGTTTCAACTTATG+CGG 0.544680 1_1:-15403399 None:intergenic
GATACATGCGACTGCTGGGT+AGG 0.544893 1_1:-15403765 None:intergenic
ACGCTACAACACCATGGCAG+TGG 0.545516 1_1:+15403466 Msa0010260:CDS
CGCTACAACACCATGGCAGT+GGG 0.546579 1_1:+15403467 Msa0010260:CDS
ATGTAAATCAGATGAATGAA+GGG 0.559122 1_1:+15403490 Msa0010260:CDS
TATAGTAGCCAAGTTTCTGC+CGG 0.562202 1_1:+15403792 Msa0010260:three_prime_UTR
ATCAGATGAATGAAGGGGAG+CGG 0.562953 1_1:+15403496 Msa0010260:CDS
ATACATGCGACTGCTGGGTA+GGG 0.563394 1_1:-15403764 None:intergenic
AAAGAAAACCGTAAGGTCAA+AGG 0.566284 1_1:+15403348 Msa0010260:CDS
AGTTGTAGGATCAACCTCCT+TGG 0.575331 1_1:-15403644 None:intergenic
AGATGTCATCATAGTCTGGA+TGG 0.576610 1_1:-15403979 None:intergenic
ATATAAGGAGAAGATGGAGA+AGG 0.579875 1_1:+15403602 Msa0010260:three_prime_UTR
TATGGTTGGGCAATCGGAGT+AGG 0.580585 1_1:-15400607 None:intergenic
GATGCAGGGGACGAGATGCA+GGG 0.582931 1_1:+15403519 Msa0010260:CDS
TTATTTCATTCGGAAAATTG+GGG 0.586712 1_1:+15404124 Msa0010260:three_prime_UTR
GGACGGTGGGCAATCAGAGA+TGG 0.587086 1_1:-15400586 None:intergenic
ATGCAGGGCAGCTGGATACA+GGG 0.592695 1_1:+15403534 Msa0010260:CDS
GGCAATCGGAGTAGGACGGT+GGG 0.593012 1_1:-15400599 None:intergenic
CGATTTGGAGTGACAACGGA+AGG 0.593203 1_1:+15403912 Msa0010260:three_prime_UTR
GGGCAATCGGAGTAGGACGG+TGG 0.593669 1_1:-15400600 None:intergenic
CTCTACGCTGTCAACAAAGT+CGG 0.595260 1_1:-15404014 None:intergenic
ATTCTGGGCTGAATTGGCTG+GGG 0.600094 1_1:+15403675 Msa0010260:three_prime_UTR
GAAGAGAGCAAATGCAGCAG+AGG 0.600570 1_1:+15403839 Msa0010260:three_prime_UTR
GCTGTCAACAAAGTCGGCAT+CGG 0.608604 1_1:-15404008 None:intergenic
GTTGGGCAATCGGAGTAGGA+CGG 0.612804 1_1:-15400603 None:intergenic
TGATGCTCGAGTTGCACGTG+AGG 0.614438 1_1:+15403863 Msa0010260:three_prime_UTR
AGTCTGGATGGTGACGATGT+CGG 0.617281 1_1:-15403967 None:intergenic
GGCTCCTAAAGAAAACCGTA+AGG 0.618595 1_1:+15403341 Msa0010260:CDS
TGATTTACATCCCACTGCCA+TGG 0.619006 1_1:-15403477 None:intergenic
TGCACGTGAGGAATATTGCA+AGG 0.626270 1_1:+15403875 Msa0010260:three_prime_UTR
CGACTTTGTTGACAGCGTAG+AGG 0.628718 1_1:+15404015 Msa0010260:three_prime_UTR
GAGAGAGAGAGGAAGCCGGT+GGG 0.629232 1_1:-15400649 None:intergenic
ACAAAACATAAAACATAGTG+CGG 0.635285 1_1:-15404069 None:intergenic
TTCTGGGCTGAATTGGCTGG+GGG 0.641385 1_1:+15403676 Msa0010260:three_prime_UTR
CACACGATTTGGAGTGACAA+CGG 0.658561 1_1:+15403908 Msa0010260:three_prime_UTR
AGTGTTACTTCCATCAAGGG+TGG 0.662451 1_1:+15403944 Msa0010260:three_prime_UTR
GGCATCTGATAATGGCACCA+AGG 0.663152 1_1:+15403627 Msa0010260:three_prime_UTR
TGTAAATCAGATGAATGAAG+GGG 0.684019 1_1:+15403491 Msa0010260:CDS
ATCTGATAATGGCACCAAGG+AGG 0.695887 1_1:+15403630 Msa0010260:three_prime_UTR
GTGATGACGCTACAACACCA+TGG 0.716250 1_1:+15403460 Msa0010260:CDS
GTTGTAGCGTCATCACTGAG+AGG 0.716312 1_1:-15403453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCATTAAATAATAACAA+TGG - chr1_1:15402322-15402341 None:intergenic 10.0%
!! ATATTAATGTTTATTTCATT+CGG + chr1_1:15404114-15404133 Msa0010260:three_prime_UTR 10.0%
!! ATATCATTAAATAATAACAA+TGG - chr1_1:15402322-15402341 None:intergenic 10.0%
!! ATATTAATGTTTATTTCATT+CGG + chr1_1:15404114-15404133 Msa0010260:three_prime_UTR 10.0%
!!! TGTAATTTTATGAATATGAT+AGG + chr1_1:15401326-15401345 Msa0010260:intron 15.0%
!! AATAACATAATCTATAAAGA+TGG - chr1_1:15402200-15402219 None:intergenic 15.0%
!!! CTTTATAGATTATGTTATTT+AGG + chr1_1:15402201-15402220 Msa0010260:intron 15.0%
!!! TTTTGACAAATAATTATATC+AGG + chr1_1:15402423-15402442 Msa0010260:intron 15.0%
!! ATATATTTATTACTAAACAC+AGG - chr1_1:15403104-15403123 None:intergenic 15.0%
!!! TGTAATTTTATGAATATGAT+AGG + chr1_1:15401326-15401345 Msa0010260:intron 15.0%
!! AATAACATAATCTATAAAGA+TGG - chr1_1:15402200-15402219 None:intergenic 15.0%
!!! CTTTATAGATTATGTTATTT+AGG + chr1_1:15402201-15402220 Msa0010260:intron 15.0%
!!! TTTTGACAAATAATTATATC+AGG + chr1_1:15402423-15402442 Msa0010260:intron 15.0%
!! ATATATTTATTACTAAACAC+AGG - chr1_1:15403104-15403123 None:intergenic 15.0%
!!! AATAATTGAAATTTTGGGAT+TGG - chr1_1:15400463-15400482 None:intergenic 20.0%
!! ATCCCAAAATTTCAATTATT+TGG + chr1_1:15400463-15400482 Msa0010260:five_prime_UTR 20.0%
!!! AGCCAAATAATTGAAATTTT+GGG - chr1_1:15400468-15400487 None:intergenic 20.0%
!!! TATGTTTTATTTCTGTCAAT+AGG - chr1_1:15400511-15400530 None:intergenic 20.0%
!! AGACTTACAAAAATTGAAAA+TGG - chr1_1:15400771-15400790 None:intergenic 20.0%
!! GCTTATACAAAAACAATTTA+AGG - chr1_1:15401079-15401098 None:intergenic 20.0%
!! TATACTACAGTATTCAATAA+AGG + chr1_1:15401284-15401303 Msa0010260:intron 20.0%
!!! TGTGATTTATTTTTGGATTT+GGG + chr1_1:15401372-15401391 Msa0010260:intron 20.0%
!!! AAAGTTGGATTTTTTTGATT+TGG + chr1_1:15401472-15401491 Msa0010260:intron 20.0%
!!! AAGTTGGATTTTTTTGATTT+GGG + chr1_1:15401473-15401492 Msa0010260:intron 20.0%
!!! TGATAATTATCATGGTTTTA+CGG + chr1_1:15401607-15401626 Msa0010260:intron 20.0%
!! ATATCACTTGAGTAAAAATA+TGG - chr1_1:15402678-15402697 None:intergenic 20.0%
!!! TGATTTATGTGTTTTTGTTT+TGG + chr1_1:15403173-15403192 Msa0010260:intron 20.0%
!!! CTATATTCTCTTATGTTTTT+TGG + chr1_1:15403309-15403328 Msa0010260:intron 20.0%
!! TTTATTTCATTCGGAAAATT+GGG + chr1_1:15404123-15404142 Msa0010260:three_prime_UTR 20.0%
!!! AATAATTGAAATTTTGGGAT+TGG - chr1_1:15400463-15400482 None:intergenic 20.0%
!! ATCCCAAAATTTCAATTATT+TGG + chr1_1:15400463-15400482 Msa0010260:five_prime_UTR 20.0%
!!! AGCCAAATAATTGAAATTTT+GGG - chr1_1:15400468-15400487 None:intergenic 20.0%
!!! TATGTTTTATTTCTGTCAAT+AGG - chr1_1:15400511-15400530 None:intergenic 20.0%
!! AGACTTACAAAAATTGAAAA+TGG - chr1_1:15400771-15400790 None:intergenic 20.0%
!! GCTTATACAAAAACAATTTA+AGG - chr1_1:15401079-15401098 None:intergenic 20.0%
!! TATACTACAGTATTCAATAA+AGG + chr1_1:15401284-15401303 Msa0010260:intron 20.0%
!!! TGTGATTTATTTTTGGATTT+GGG + chr1_1:15401372-15401391 Msa0010260:intron 20.0%
!!! AAAGTTGGATTTTTTTGATT+TGG + chr1_1:15401472-15401491 Msa0010260:intron 20.0%
!!! AAGTTGGATTTTTTTGATTT+GGG + chr1_1:15401473-15401492 Msa0010260:intron 20.0%
!!! TGATAATTATCATGGTTTTA+CGG + chr1_1:15401607-15401626 Msa0010260:intron 20.0%
!! ATATCACTTGAGTAAAAATA+TGG - chr1_1:15402678-15402697 None:intergenic 20.0%
!!! TGATTTATGTGTTTTTGTTT+TGG + chr1_1:15403173-15403192 Msa0010260:intron 20.0%
!!! CTATATTCTCTTATGTTTTT+TGG + chr1_1:15403309-15403328 Msa0010260:intron 20.0%
!! TTTATTTCATTCGGAAAATT+GGG + chr1_1:15404123-15404142 Msa0010260:three_prime_UTR 20.0%
!! GAGCCAAATAATTGAAATTT+TGG - chr1_1:15400469-15400488 None:intergenic 25.0%
! AAGAAAAGAATGATATGGTT+GGG - chr1_1:15400623-15400642 None:intergenic 25.0%
! ATTCCATACATGTATATTTG+TGG + chr1_1:15400824-15400843 Msa0010260:intron 25.0%
! CAAATTATTCAATGTGATTG+TGG + chr1_1:15400946-15400965 Msa0010260:intron 25.0%
! CTATACGAACAGATTAAATA+TGG + chr1_1:15401055-15401074 Msa0010260:intron 25.0%
!! GCTATAATCTGTTTTCATAA+TGG + chr1_1:15401097-15401116 Msa0010260:intron 25.0%
! CCAAAAATAAATCACAGATT+GGG - chr1_1:15401368-15401387 None:intergenic 25.0%
! TCCAAAAATAAATCACAGAT+TGG - chr1_1:15401369-15401388 None:intergenic 25.0%
!!! CTGTGATTTATTTTTGGATT+TGG + chr1_1:15401371-15401390 Msa0010260:intron 25.0%
!!! TTATTTTTGGATTTGGGTTT+TGG + chr1_1:15401378-15401397 Msa0010260:intron 25.0%
!!! GATTTGTGGTTTTTAAAAGT+TGG + chr1_1:15401457-15401476 Msa0010260:intron 25.0%
!!! GGTTAGTTTGATAATTATCA+TGG + chr1_1:15401599-15401618 Msa0010260:intron 25.0%
!!! GATAATTATCATGGTTTTAC+GGG + chr1_1:15401608-15401627 Msa0010260:intron 25.0%
! TTGTAAGAAACATATCATGA+AGG - chr1_1:15401672-15401691 None:intergenic 25.0%
!! TGTTCATTTTCAATCACTAA+GGG + chr1_1:15401761-15401780 Msa0010260:intron 25.0%
! ATAGCGGTTTAATGTTAAAA+TGG + chr1_1:15401837-15401856 Msa0010260:intron 25.0%
! GTTATAACTTTCTTAATGCA+TGG + chr1_1:15401874-15401893 Msa0010260:intron 25.0%
! ATTTCAGTTAAAGATCATCA+TGG - chr1_1:15401952-15401971 None:intergenic 25.0%
!! ATCTTTTCTTTATCTGATTC+AGG + chr1_1:15402111-15402130 Msa0010260:intron 25.0%
! ATATTGCACATATATAGACT+AGG + chr1_1:15402338-15402357 Msa0010260:intron 25.0%
! ACATATATAGACTAGGTATA+TGG + chr1_1:15402345-15402364 Msa0010260:intron 25.0%
!!! AATTTAGTTCTTACAATGCT+TGG + chr1_1:15402370-15402389 Msa0010260:intron 25.0%
!! TTCATTATGCCTTTATTTGA+TGG + chr1_1:15402446-15402465 Msa0010260:intron 25.0%
! TTTCACTTTCCATCAAATAA+AGG - chr1_1:15402458-15402477 None:intergenic 25.0%
! TAAATAACAACCATTTCACT+TGG + chr1_1:15402557-15402576 Msa0010260:intron 25.0%
! AAATAACAACCATTTCACTT+GGG + chr1_1:15402558-15402577 Msa0010260:intron 25.0%
! ATAGAAACTACTACCAAATT+CGG - chr1_1:15402640-15402659 None:intergenic 25.0%
! TTGAGTAAAAATATGGTATC+AGG - chr1_1:15402671-15402690 None:intergenic 25.0%
!!! TTATGTGTTTTTGTTTTGGT+TGG + chr1_1:15403177-15403196 Msa0010260:intron 25.0%
! TTAGAGCAATAATTAGTGTA+TGG - chr1_1:15403236-15403255 None:intergenic 25.0%
!!! TATGCAAACTTTAAAACAGA+TGG - chr1_1:15403263-15403282 None:intergenic 25.0%
! ATGTAAATCAGATGAATGAA+GGG + chr1_1:15403490-15403509 Msa0010260:CDS 25.0%
! TACAACTCAATTGAAATTCT+GGG + chr1_1:15403660-15403679 Msa0010260:three_prime_UTR 25.0%
! ACAAAACATAAAACATAGTG+CGG - chr1_1:15404072-15404091 None:intergenic 25.0%
! GTTTATTTCATTCGGAAAAT+TGG + chr1_1:15404122-15404141 Msa0010260:three_prime_UTR 25.0%
! TTATTTCATTCGGAAAATTG+GGG + chr1_1:15404124-15404143 Msa0010260:three_prime_UTR 25.0%
!! GAGCCAAATAATTGAAATTT+TGG - chr1_1:15400469-15400488 None:intergenic 25.0%
! AAGAAAAGAATGATATGGTT+GGG - chr1_1:15400623-15400642 None:intergenic 25.0%
! ATTCCATACATGTATATTTG+TGG + chr1_1:15400824-15400843 Msa0010260:intron 25.0%
! CAAATTATTCAATGTGATTG+TGG + chr1_1:15400946-15400965 Msa0010260:intron 25.0%
! CTATACGAACAGATTAAATA+TGG + chr1_1:15401055-15401074 Msa0010260:intron 25.0%
!! GCTATAATCTGTTTTCATAA+TGG + chr1_1:15401097-15401116 Msa0010260:intron 25.0%
! CCAAAAATAAATCACAGATT+GGG - chr1_1:15401368-15401387 None:intergenic 25.0%
! TCCAAAAATAAATCACAGAT+TGG - chr1_1:15401369-15401388 None:intergenic 25.0%
!!! CTGTGATTTATTTTTGGATT+TGG + chr1_1:15401371-15401390 Msa0010260:intron 25.0%
!!! TTATTTTTGGATTTGGGTTT+TGG + chr1_1:15401378-15401397 Msa0010260:intron 25.0%
!!! GATTTGTGGTTTTTAAAAGT+TGG + chr1_1:15401457-15401476 Msa0010260:intron 25.0%
!!! GGTTAGTTTGATAATTATCA+TGG + chr1_1:15401599-15401618 Msa0010260:intron 25.0%
!!! GATAATTATCATGGTTTTAC+GGG + chr1_1:15401608-15401627 Msa0010260:intron 25.0%
! TTGTAAGAAACATATCATGA+AGG - chr1_1:15401672-15401691 None:intergenic 25.0%
!! TGTTCATTTTCAATCACTAA+GGG + chr1_1:15401761-15401780 Msa0010260:intron 25.0%
! ATAGCGGTTTAATGTTAAAA+TGG + chr1_1:15401837-15401856 Msa0010260:intron 25.0%
! GTTATAACTTTCTTAATGCA+TGG + chr1_1:15401874-15401893 Msa0010260:intron 25.0%
! ATTTCAGTTAAAGATCATCA+TGG - chr1_1:15401952-15401971 None:intergenic 25.0%
!! ATCTTTTCTTTATCTGATTC+AGG + chr1_1:15402111-15402130 Msa0010260:intron 25.0%
! ATATTGCACATATATAGACT+AGG + chr1_1:15402338-15402357 Msa0010260:intron 25.0%
! ACATATATAGACTAGGTATA+TGG + chr1_1:15402345-15402364 Msa0010260:intron 25.0%
!!! AATTTAGTTCTTACAATGCT+TGG + chr1_1:15402370-15402389 Msa0010260:intron 25.0%
!! TTCATTATGCCTTTATTTGA+TGG + chr1_1:15402446-15402465 Msa0010260:intron 25.0%
! TTTCACTTTCCATCAAATAA+AGG - chr1_1:15402458-15402477 None:intergenic 25.0%
! TAAATAACAACCATTTCACT+TGG + chr1_1:15402557-15402576 Msa0010260:intron 25.0%
! AAATAACAACCATTTCACTT+GGG + chr1_1:15402558-15402577 Msa0010260:intron 25.0%
! ATAGAAACTACTACCAAATT+CGG - chr1_1:15402640-15402659 None:intergenic 25.0%
! TTGAGTAAAAATATGGTATC+AGG - chr1_1:15402671-15402690 None:intergenic 25.0%
!!! TTATGTGTTTTTGTTTTGGT+TGG + chr1_1:15403177-15403196 Msa0010260:intron 25.0%
! TTAGAGCAATAATTAGTGTA+TGG - chr1_1:15403236-15403255 None:intergenic 25.0%
!!! TATGCAAACTTTAAAACAGA+TGG - chr1_1:15403263-15403282 None:intergenic 25.0%
! ATGTAAATCAGATGAATGAA+GGG + chr1_1:15403490-15403509 Msa0010260:CDS 25.0%
! TACAACTCAATTGAAATTCT+GGG + chr1_1:15403660-15403679 Msa0010260:three_prime_UTR 25.0%
! ACAAAACATAAAACATAGTG+CGG - chr1_1:15404072-15404091 None:intergenic 25.0%
! GTTTATTTCATTCGGAAAAT+TGG + chr1_1:15404122-15404141 Msa0010260:three_prime_UTR 25.0%
! TTATTTCATTCGGAAAATTG+GGG + chr1_1:15404124-15404143 Msa0010260:three_prime_UTR 25.0%
!! AGGAGTTTTGGCAAAAAAAT+TGG - chr1_1:15400491-15400510 None:intergenic 30.0%
! ATTTCTGTCAATAGGAGTTT+TGG - chr1_1:15400503-15400522 None:intergenic 30.0%
! CTGTTCTGAGTGAATAAAAT+AGG - chr1_1:15400549-15400568 None:intergenic 30.0%
GAAGAAAAGAATGATATGGT+TGG - chr1_1:15400624-15400643 None:intergenic 30.0%
GATCGAAGAAAAGAATGATA+TGG - chr1_1:15400628-15400647 None:intergenic 30.0%
TTGTGAGAAAAGAGAACAAA+TGG + chr1_1:15400740-15400759 Msa0010260:exon 30.0%
TTTGTAATTACCGATGAAGA+AGG - chr1_1:15400799-15400818 None:intergenic 30.0%
CAACCACAAATATACATGTA+TGG - chr1_1:15400830-15400849 None:intergenic 30.0%
CATACATGTATATTTGTGGT+TGG + chr1_1:15400828-15400847 Msa0010260:intron 30.0%
! ATGTATATTTGTGGTTGGTA+GGG + chr1_1:15400833-15400852 Msa0010260:intron 30.0%
! TTTTCAATTGATTGTGATCG+TGG + chr1_1:15400878-15400897 Msa0010260:intron 30.0%
CAAATTGTTCAATGTGATTG+TGG + chr1_1:15400917-15400936 Msa0010260:intron 30.0%
GAATACTGTAGTATACTTGT+TGG - chr1_1:15401279-15401298 None:intergenic 30.0%
!! CCCAATCTGTGATTTATTTT+TGG + chr1_1:15401365-15401384 Msa0010260:intron 30.0%
!! GTCAAGTAGTGTTGAATTTT+GGG + chr1_1:15401414-15401433 Msa0010260:intron 30.0%
!! TCAAGTAGTGTTGAATTTTG+GGG + chr1_1:15401415-15401434 Msa0010260:intron 30.0%
AGATTAGGACACATTCTATT+AGG + chr1_1:15401502-15401521 Msa0010260:intron 30.0%
GAATATTGATGAGACTTTCA+AGG + chr1_1:15401536-15401555 Msa0010260:CDS 30.0%
! CTGTTCATTTTCAATCACTA+AGG + chr1_1:15401760-15401779 Msa0010260:intron 30.0%
TTCACTTTGCAAATTGCAAT+TGG - chr1_1:15402004-15402023 None:intergenic 30.0%
!!! AGATGTAACTTAGTTTTGTC+TGG + chr1_1:15402075-15402094 Msa0010260:intron 30.0%
TAATCTATAAAGATGGTGAC+TGG - chr1_1:15402193-15402212 None:intergenic 30.0%
GCTTTCATATGTTGAATTCT+AGG + chr1_1:15402520-15402539 Msa0010260:intron 30.0%
ATGAATGATTGAAGTCCTTA+AGG + chr1_1:15403200-15403219 Msa0010260:intron 30.0%
!!! TATGTTTTTTGGACAGATCA+TGG + chr1_1:15403320-15403339 Msa0010260:intron 30.0%
GATGTAAATCAGATGAATGA+AGG + chr1_1:15403489-15403508 Msa0010260:CDS 30.0%
TGTAAATCAGATGAATGAAG+GGG + chr1_1:15403491-15403510 Msa0010260:CDS 30.0%
!! ATGTTTGTTTTCTCTTGAGT+AGG + chr1_1:15403575-15403594 Msa0010260:three_prime_UTR 30.0%
TCTTGAGTAGGAAACATATA+AGG + chr1_1:15403587-15403606 Msa0010260:three_prime_UTR 30.0%
! CAGAATTTCAATTGAGTTGT+AGG - chr1_1:15403661-15403680 None:intergenic 30.0%
CTACAACTCAATTGAAATTC+TGG + chr1_1:15403659-15403678 Msa0010260:three_prime_UTR 30.0%
TCTTTATGGTACTTGTGATA+TGG + chr1_1:15403714-15403733 Msa0010260:three_prime_UTR 30.0%
!! AGGAGTTTTGGCAAAAAAAT+TGG - chr1_1:15400491-15400510 None:intergenic 30.0%
! ATTTCTGTCAATAGGAGTTT+TGG - chr1_1:15400503-15400522 None:intergenic 30.0%
! CTGTTCTGAGTGAATAAAAT+AGG - chr1_1:15400549-15400568 None:intergenic 30.0%
GAAGAAAAGAATGATATGGT+TGG - chr1_1:15400624-15400643 None:intergenic 30.0%
GATCGAAGAAAAGAATGATA+TGG - chr1_1:15400628-15400647 None:intergenic 30.0%
TTGTGAGAAAAGAGAACAAA+TGG + chr1_1:15400740-15400759 Msa0010260:exon 30.0%
TTTGTAATTACCGATGAAGA+AGG - chr1_1:15400799-15400818 None:intergenic 30.0%
CAACCACAAATATACATGTA+TGG - chr1_1:15400830-15400849 None:intergenic 30.0%
CATACATGTATATTTGTGGT+TGG + chr1_1:15400828-15400847 Msa0010260:intron 30.0%
! ATGTATATTTGTGGTTGGTA+GGG + chr1_1:15400833-15400852 Msa0010260:intron 30.0%
! TTTTCAATTGATTGTGATCG+TGG + chr1_1:15400878-15400897 Msa0010260:intron 30.0%
CAAATTGTTCAATGTGATTG+TGG + chr1_1:15400917-15400936 Msa0010260:intron 30.0%
GAATACTGTAGTATACTTGT+TGG - chr1_1:15401279-15401298 None:intergenic 30.0%
!! CCCAATCTGTGATTTATTTT+TGG + chr1_1:15401365-15401384 Msa0010260:intron 30.0%
!! GTCAAGTAGTGTTGAATTTT+GGG + chr1_1:15401414-15401433 Msa0010260:intron 30.0%
!! TCAAGTAGTGTTGAATTTTG+GGG + chr1_1:15401415-15401434 Msa0010260:intron 30.0%
AGATTAGGACACATTCTATT+AGG + chr1_1:15401502-15401521 Msa0010260:intron 30.0%
GAATATTGATGAGACTTTCA+AGG + chr1_1:15401536-15401555 Msa0010260:CDS 30.0%
! CTGTTCATTTTCAATCACTA+AGG + chr1_1:15401760-15401779 Msa0010260:intron 30.0%
TTCACTTTGCAAATTGCAAT+TGG - chr1_1:15402004-15402023 None:intergenic 30.0%
!!! AGATGTAACTTAGTTTTGTC+TGG + chr1_1:15402075-15402094 Msa0010260:intron 30.0%
TAATCTATAAAGATGGTGAC+TGG - chr1_1:15402193-15402212 None:intergenic 30.0%
GCTTTCATATGTTGAATTCT+AGG + chr1_1:15402520-15402539 Msa0010260:intron 30.0%
ATGAATGATTGAAGTCCTTA+AGG + chr1_1:15403200-15403219 Msa0010260:intron 30.0%
!!! TATGTTTTTTGGACAGATCA+TGG + chr1_1:15403320-15403339 Msa0010260:intron 30.0%
GATGTAAATCAGATGAATGA+AGG + chr1_1:15403489-15403508 Msa0010260:CDS 30.0%
TGTAAATCAGATGAATGAAG+GGG + chr1_1:15403491-15403510 Msa0010260:CDS 30.0%
!! ATGTTTGTTTTCTCTTGAGT+AGG + chr1_1:15403575-15403594 Msa0010260:three_prime_UTR 30.0%
TCTTGAGTAGGAAACATATA+AGG + chr1_1:15403587-15403606 Msa0010260:three_prime_UTR 30.0%
! CAGAATTTCAATTGAGTTGT+AGG - chr1_1:15403661-15403680 None:intergenic 30.0%
CTACAACTCAATTGAAATTC+TGG + chr1_1:15403659-15403678 Msa0010260:three_prime_UTR 30.0%
TCTTTATGGTACTTGTGATA+TGG + chr1_1:15403714-15403733 Msa0010260:three_prime_UTR 30.0%
CATGTATATTTGTGGTTGGT+AGG + chr1_1:15400832-15400851 Msa0010260:intron 35.0%
TTATTCAATGTGATTGTGGC+TGG + chr1_1:15400950-15400969 Msa0010260:intron 35.0%
TCATTATCGTGACAAACACT+TGG + chr1_1:15401019-15401038 Msa0010260:intron 35.0%
!!! GGGTTTTGGTTGATTTGATT+TGG + chr1_1:15401392-15401411 Msa0010260:intron 35.0%
!! GGTCAAGTAGTGTTGAATTT+TGG + chr1_1:15401413-15401432 Msa0010260:intron 35.0%
TCACTTTGATCAATATCGTC+AGG + chr1_1:15401578-15401597 Msa0010260:CDS 35.0%
TCACTAAGGGTCTAAACTAT+AGG + chr1_1:15401774-15401793 Msa0010260:intron 35.0%
CACTAAGGGTCTAAACTATA+GGG + chr1_1:15401775-15401794 Msa0010260:intron 35.0%
GTCGAATGCTCTAATTATAG+CGG + chr1_1:15401821-15401840 Msa0010260:intron 35.0%
ATAAAGATGGTGACTGGTAA+GGG - chr1_1:15402187-15402206 None:intergenic 35.0%
TATAAAGATGGTGACTGGTA+AGG - chr1_1:15402188-15402207 None:intergenic 35.0%
CAATGCTTGGAAAATCTTTC+TGG + chr1_1:15402383-15402402 Msa0010260:intron 35.0%
! AGACATTCCTTTTCCGAATT+TGG + chr1_1:15402624-15402643 Msa0010260:intron 35.0%
ACTACTACCAAATTCGGAAA+AGG - chr1_1:15402634-15402653 None:intergenic 35.0%
ATTAGCACTACAAGCTCAAT+TGG - chr1_1:15403043-15403062 None:intergenic 35.0%
CTGAAGCATAAGAACAAGTA+TGG - chr1_1:15403073-15403092 None:intergenic 35.0%
ATTACTAAACACAGGCTCAA+GGG - chr1_1:15403096-15403115 None:intergenic 35.0%
TATTACTAAACACAGGCTCA+AGG - chr1_1:15403097-15403116 None:intergenic 35.0%
AGATGAGATGAAATCGACAT+AGG + chr1_1:15403149-15403168 Msa0010260:intron 35.0%
! TTGACCTTACGGTTTTCTTT+AGG - chr1_1:15403348-15403367 None:intergenic 35.0%
AAAGAAAACCGTAAGGTCAA+AGG + chr1_1:15403348-15403367 Msa0010260:CDS 35.0%
!!! ATCATACGCTTTTTCATCTG+TGG - chr1_1:15403375-15403394 None:intergenic 35.0%
GGAAACATATAAGGAGAAGA+TGG + chr1_1:15403596-15403615 Msa0010260:three_prime_UTR 35.0%
ATATAAGGAGAAGATGGAGA+AGG + chr1_1:15403602-15403621 Msa0010260:three_prime_UTR 35.0%
ATTGAAATTCTGGGCTGAAT+TGG + chr1_1:15403669-15403688 Msa0010260:three_prime_UTR 35.0%
CATGTATATTTGTGGTTGGT+AGG + chr1_1:15400832-15400851 Msa0010260:intron 35.0%
TTATTCAATGTGATTGTGGC+TGG + chr1_1:15400950-15400969 Msa0010260:intron 35.0%
TCATTATCGTGACAAACACT+TGG + chr1_1:15401019-15401038 Msa0010260:intron 35.0%
!!! GGGTTTTGGTTGATTTGATT+TGG + chr1_1:15401392-15401411 Msa0010260:intron 35.0%
!! GGTCAAGTAGTGTTGAATTT+TGG + chr1_1:15401413-15401432 Msa0010260:intron 35.0%
TCACTTTGATCAATATCGTC+AGG + chr1_1:15401578-15401597 Msa0010260:CDS 35.0%
TCACTAAGGGTCTAAACTAT+AGG + chr1_1:15401774-15401793 Msa0010260:intron 35.0%
CACTAAGGGTCTAAACTATA+GGG + chr1_1:15401775-15401794 Msa0010260:intron 35.0%
GTCGAATGCTCTAATTATAG+CGG + chr1_1:15401821-15401840 Msa0010260:intron 35.0%
ATAAAGATGGTGACTGGTAA+GGG - chr1_1:15402187-15402206 None:intergenic 35.0%
TATAAAGATGGTGACTGGTA+AGG - chr1_1:15402188-15402207 None:intergenic 35.0%
CAATGCTTGGAAAATCTTTC+TGG + chr1_1:15402383-15402402 Msa0010260:intron 35.0%
! AGACATTCCTTTTCCGAATT+TGG + chr1_1:15402624-15402643 Msa0010260:intron 35.0%
ACTACTACCAAATTCGGAAA+AGG - chr1_1:15402634-15402653 None:intergenic 35.0%
ATTAGCACTACAAGCTCAAT+TGG - chr1_1:15403043-15403062 None:intergenic 35.0%
CTGAAGCATAAGAACAAGTA+TGG - chr1_1:15403073-15403092 None:intergenic 35.0%
ATTACTAAACACAGGCTCAA+GGG - chr1_1:15403096-15403115 None:intergenic 35.0%
TATTACTAAACACAGGCTCA+AGG - chr1_1:15403097-15403116 None:intergenic 35.0%
AGATGAGATGAAATCGACAT+AGG + chr1_1:15403149-15403168 Msa0010260:intron 35.0%
! TTGACCTTACGGTTTTCTTT+AGG - chr1_1:15403348-15403367 None:intergenic 35.0%
AAAGAAAACCGTAAGGTCAA+AGG + chr1_1:15403348-15403367 Msa0010260:CDS 35.0%
!!! ATCATACGCTTTTTCATCTG+TGG - chr1_1:15403375-15403394 None:intergenic 35.0%
GGAAACATATAAGGAGAAGA+TGG + chr1_1:15403596-15403615 Msa0010260:three_prime_UTR 35.0%
ATATAAGGAGAAGATGGAGA+AGG + chr1_1:15403602-15403621 Msa0010260:three_prime_UTR 35.0%
ATTGAAATTCTGGGCTGAAT+TGG + chr1_1:15403669-15403688 Msa0010260:three_prime_UTR 35.0%
TTGGGATTGGAGAAAAAGTG+TGG - chr1_1:15400450-15400469 None:intergenic 40.0%
GAATGATATGGTTGGGCAAT+CGG - chr1_1:15400616-15400635 None:intergenic 40.0%
TTTCAGGATTCTCGTGAGAA+AGG + chr1_1:15400713-15400732 Msa0010260:five_prime_UTR 40.0%
TTCAGGATTCTCGTGAGAAA+GGG + chr1_1:15400714-15400733 Msa0010260:five_prime_UTR 40.0%
AGTCTTCTCACCTTCTTCAT+CGG + chr1_1:15400786-15400805 Msa0010260:intron 40.0%
ATTGTGATCGTGGCTTATTG+TGG + chr1_1:15400888-15400907 Msa0010260:intron 40.0%
!! CAGATTGGGCTTTGAAAAAC+AGG - chr1_1:15401354-15401373 None:intergenic 40.0%
!! GTTGAATTTTGGGGATCTGA+CGG + chr1_1:15401424-15401443 Msa0010260:intron 40.0%
!! TTGAATTTTGGGGATCTGAC+GGG + chr1_1:15401425-15401444 Msa0010260:intron 40.0%
! TGATTTGGGTGTTGCAGATT+AGG + chr1_1:15401487-15401506 Msa0010260:intron 40.0%
CAAGGCTGCTGTGATTATAT+TGG + chr1_1:15401554-15401573 Msa0010260:CDS 40.0%
TACCTTGAGAGACCTAATAG+AGG + chr1_1:15401799-15401818 Msa0010260:intron 40.0%
! TAGAGCATTCGACCTCTATT+AGG - chr1_1:15401814-15401833 None:intergenic 40.0%
ATGATAGTAGTCAGCATTGC+AGG - chr1_1:15401916-15401935 None:intergenic 40.0%
TGCAGTCCAGTTGACTAAAT+GGG - chr1_1:15402045-15402064 None:intergenic 40.0%
ATGCAGTCCAGTTGACTAAA+TGG - chr1_1:15402046-15402065 None:intergenic 40.0%
! ATTACAGAAGCGCATGAGTT+AGG - chr1_1:15402244-15402263 None:intergenic 40.0%
AAGAGCAAAAGCTCTTACAC+AGG + chr1_1:15402498-15402517 Msa0010260:intron 40.0%
! GAGATTTTGCCCAAGTGAAA+TGG - chr1_1:15402570-15402589 None:intergenic 40.0%
TGTGCATTCAGCACTACTAA+AGG + chr1_1:15402732-15402751 Msa0010260:intron 40.0%
GTTTCACAACAAGCACACTA+AGG + chr1_1:15402859-15402878 Msa0010260:intron 40.0%
AGGAACAGAGGATTTCTCTT+TGG + chr1_1:15402879-15402898 Msa0010260:intron 40.0%
! CAGAGGATTTCTCTTTGGAA+AGG + chr1_1:15402884-15402903 Msa0010260:intron 40.0%
TATGGCGTACATGTTCCTTA+AGG - chr1_1:15403218-15403237 None:intergenic 40.0%
GTCGCTTGTTTCAACTTATG+CGG - chr1_1:15403402-15403421 None:intergenic 40.0%
!! AGAAGGAAGGCATCTGATAA+TGG + chr1_1:15403619-15403638 Msa0010260:three_prime_UTR 40.0%
AAGACTCAGGGATGTCTTTA+TGG + chr1_1:15403700-15403719 Msa0010260:three_prime_UTR 40.0%
GCAGAAACTTGGCTACTATA+TGG - chr1_1:15403792-15403811 None:intergenic 40.0%
TATAGTAGCCAAGTTTCTGC+CGG + chr1_1:15403792-15403811 Msa0010260:three_prime_UTR 40.0%
!! CTGAGTGTTACTTCCATCAA+GGG + chr1_1:15403941-15403960 Msa0010260:three_prime_UTR 40.0%
AGATGTCATCATAGTCTGGA+TGG - chr1_1:15403982-15404001 None:intergenic 40.0%
TCAGAGATGTCATCATAGTC+TGG - chr1_1:15403986-15404005 None:intergenic 40.0%
TTGGGATTGGAGAAAAAGTG+TGG - chr1_1:15400450-15400469 None:intergenic 40.0%
GAATGATATGGTTGGGCAAT+CGG - chr1_1:15400616-15400635 None:intergenic 40.0%
TTTCAGGATTCTCGTGAGAA+AGG + chr1_1:15400713-15400732 Msa0010260:five_prime_UTR 40.0%
TTCAGGATTCTCGTGAGAAA+GGG + chr1_1:15400714-15400733 Msa0010260:five_prime_UTR 40.0%
AGTCTTCTCACCTTCTTCAT+CGG + chr1_1:15400786-15400805 Msa0010260:intron 40.0%
ATTGTGATCGTGGCTTATTG+TGG + chr1_1:15400888-15400907 Msa0010260:intron 40.0%
!! CAGATTGGGCTTTGAAAAAC+AGG - chr1_1:15401354-15401373 None:intergenic 40.0%
!! GTTGAATTTTGGGGATCTGA+CGG + chr1_1:15401424-15401443 Msa0010260:intron 40.0%
!! TTGAATTTTGGGGATCTGAC+GGG + chr1_1:15401425-15401444 Msa0010260:intron 40.0%
! TGATTTGGGTGTTGCAGATT+AGG + chr1_1:15401487-15401506 Msa0010260:intron 40.0%
CAAGGCTGCTGTGATTATAT+TGG + chr1_1:15401554-15401573 Msa0010260:CDS 40.0%
TACCTTGAGAGACCTAATAG+AGG + chr1_1:15401799-15401818 Msa0010260:intron 40.0%
! TAGAGCATTCGACCTCTATT+AGG - chr1_1:15401814-15401833 None:intergenic 40.0%
ATGATAGTAGTCAGCATTGC+AGG - chr1_1:15401916-15401935 None:intergenic 40.0%
TGCAGTCCAGTTGACTAAAT+GGG - chr1_1:15402045-15402064 None:intergenic 40.0%
ATGCAGTCCAGTTGACTAAA+TGG - chr1_1:15402046-15402065 None:intergenic 40.0%
! ATTACAGAAGCGCATGAGTT+AGG - chr1_1:15402244-15402263 None:intergenic 40.0%
AAGAGCAAAAGCTCTTACAC+AGG + chr1_1:15402498-15402517 Msa0010260:intron 40.0%
! GAGATTTTGCCCAAGTGAAA+TGG - chr1_1:15402570-15402589 None:intergenic 40.0%
TGTGCATTCAGCACTACTAA+AGG + chr1_1:15402732-15402751 Msa0010260:intron 40.0%
GTTTCACAACAAGCACACTA+AGG + chr1_1:15402859-15402878 Msa0010260:intron 40.0%
AGGAACAGAGGATTTCTCTT+TGG + chr1_1:15402879-15402898 Msa0010260:intron 40.0%
! CAGAGGATTTCTCTTTGGAA+AGG + chr1_1:15402884-15402903 Msa0010260:intron 40.0%
TATGGCGTACATGTTCCTTA+AGG - chr1_1:15403218-15403237 None:intergenic 40.0%
GTCGCTTGTTTCAACTTATG+CGG - chr1_1:15403402-15403421 None:intergenic 40.0%
!! AGAAGGAAGGCATCTGATAA+TGG + chr1_1:15403619-15403638 Msa0010260:three_prime_UTR 40.0%
AAGACTCAGGGATGTCTTTA+TGG + chr1_1:15403700-15403719 Msa0010260:three_prime_UTR 40.0%
GCAGAAACTTGGCTACTATA+TGG - chr1_1:15403792-15403811 None:intergenic 40.0%
TATAGTAGCCAAGTTTCTGC+CGG + chr1_1:15403792-15403811 Msa0010260:three_prime_UTR 40.0%
!! CTGAGTGTTACTTCCATCAA+GGG + chr1_1:15403941-15403960 Msa0010260:three_prime_UTR 40.0%
AGATGTCATCATAGTCTGGA+TGG - chr1_1:15403982-15404001 None:intergenic 40.0%
TCAGAGATGTCATCATAGTC+TGG - chr1_1:15403986-15404005 None:intergenic 40.0%
! TCTTTTCTTCGATCACCCAC+CGG + chr1_1:15400634-15400653 Msa0010260:five_prime_UTR 45.0%
CTCTCTCTCTCTTCGATTTC+AGG + chr1_1:15400697-15400716 Msa0010260:five_prime_UTR 45.0%
! ACGGGTGTTTTGTGGATTTG+TGG + chr1_1:15401443-15401462 Msa0010260:intron 45.0%
GACCTCTATTAGGTCTCTCA+AGG - chr1_1:15401804-15401823 None:intergenic 45.0%
TCCAGTCCCATTTAGTCAAC+TGG + chr1_1:15402036-15402055 Msa0010260:intron 45.0%
TCCAGTTGACTAAATGGGAC+TGG - chr1_1:15402040-15402059 None:intergenic 45.0%
! TGAAATAGCTCTGCCAGTTC+AGG + chr1_1:15402473-15402492 Msa0010260:intron 45.0%
! GAAATAGCTCTGCCAGTTCA+GGG + chr1_1:15402474-15402493 Msa0010260:intron 45.0%
! CTTTTGCTCTTTCCCTGAAC+TGG - chr1_1:15402489-15402508 None:intergenic 45.0%
ACAAGCACACTAAGGAACAG+AGG + chr1_1:15402867-15402886 Msa0010260:intron 45.0%
GGCTCCTAAAGAAAACCGTA+AGG + chr1_1:15403341-15403360 Msa0010260:CDS 45.0%
TCTGTGGACCTTTGACCTTA+CGG - chr1_1:15403359-15403378 None:intergenic 45.0%
TGATTTACATCCCACTGCCA+TGG - chr1_1:15403480-15403499 None:intergenic 45.0%
ATCAGATGAATGAAGGGGAG+CGG + chr1_1:15403496-15403515 Msa0010260:CDS 45.0%
AAGGAGAAGATGGAGAAGGA+AGG + chr1_1:15403606-15403625 Msa0010260:three_prime_UTR 45.0%
!! ATCTGATAATGGCACCAAGG+AGG + chr1_1:15403630-15403649 Msa0010260:three_prime_UTR 45.0%
AGTTGTAGGATCAACCTCCT+TGG - chr1_1:15403647-15403666 None:intergenic 45.0%
AAATTCTGGGCTGAATTGGC+TGG + chr1_1:15403673-15403692 Msa0010260:three_prime_UTR 45.0%
AATTCTGGGCTGAATTGGCT+GGG + chr1_1:15403674-15403693 Msa0010260:three_prime_UTR 45.0%
TGCACGTGAGGAATATTGCA+AGG + chr1_1:15403875-15403894 Msa0010260:three_prime_UTR 45.0%
GCTAATAAGCGCACACGATT+TGG + chr1_1:15403897-15403916 Msa0010260:three_prime_UTR 45.0%
! CACACGATTTGGAGTGACAA+CGG + chr1_1:15403908-15403927 Msa0010260:three_prime_UTR 45.0%
!! GCTGAGTGTTACTTCCATCA+AGG + chr1_1:15403940-15403959 Msa0010260:three_prime_UTR 45.0%
!! AGTGTTACTTCCATCAAGGG+TGG + chr1_1:15403944-15403963 Msa0010260:three_prime_UTR 45.0%
CTCTACGCTGTCAACAAAGT+CGG - chr1_1:15404017-15404036 None:intergenic 45.0%
! TCTTTTCTTCGATCACCCAC+CGG + chr1_1:15400634-15400653 Msa0010260:five_prime_UTR 45.0%
CTCTCTCTCTCTTCGATTTC+AGG + chr1_1:15400697-15400716 Msa0010260:five_prime_UTR 45.0%
! ACGGGTGTTTTGTGGATTTG+TGG + chr1_1:15401443-15401462 Msa0010260:intron 45.0%
GACCTCTATTAGGTCTCTCA+AGG - chr1_1:15401804-15401823 None:intergenic 45.0%
TCCAGTCCCATTTAGTCAAC+TGG + chr1_1:15402036-15402055 Msa0010260:intron 45.0%
TCCAGTTGACTAAATGGGAC+TGG - chr1_1:15402040-15402059 None:intergenic 45.0%
! TGAAATAGCTCTGCCAGTTC+AGG + chr1_1:15402473-15402492 Msa0010260:intron 45.0%
! GAAATAGCTCTGCCAGTTCA+GGG + chr1_1:15402474-15402493 Msa0010260:intron 45.0%
! CTTTTGCTCTTTCCCTGAAC+TGG - chr1_1:15402489-15402508 None:intergenic 45.0%
ACAAGCACACTAAGGAACAG+AGG + chr1_1:15402867-15402886 Msa0010260:intron 45.0%
GGCTCCTAAAGAAAACCGTA+AGG + chr1_1:15403341-15403360 Msa0010260:CDS 45.0%
TCTGTGGACCTTTGACCTTA+CGG - chr1_1:15403359-15403378 None:intergenic 45.0%
TGATTTACATCCCACTGCCA+TGG - chr1_1:15403480-15403499 None:intergenic 45.0%
ATCAGATGAATGAAGGGGAG+CGG + chr1_1:15403496-15403515 Msa0010260:CDS 45.0%
AAGGAGAAGATGGAGAAGGA+AGG + chr1_1:15403606-15403625 Msa0010260:three_prime_UTR 45.0%
!! ATCTGATAATGGCACCAAGG+AGG + chr1_1:15403630-15403649 Msa0010260:three_prime_UTR 45.0%
AGTTGTAGGATCAACCTCCT+TGG - chr1_1:15403647-15403666 None:intergenic 45.0%
AAATTCTGGGCTGAATTGGC+TGG + chr1_1:15403673-15403692 Msa0010260:three_prime_UTR 45.0%
AATTCTGGGCTGAATTGGCT+GGG + chr1_1:15403674-15403693 Msa0010260:three_prime_UTR 45.0%
TGCACGTGAGGAATATTGCA+AGG + chr1_1:15403875-15403894 Msa0010260:three_prime_UTR 45.0%
GCTAATAAGCGCACACGATT+TGG + chr1_1:15403897-15403916 Msa0010260:three_prime_UTR 45.0%
! CACACGATTTGGAGTGACAA+CGG + chr1_1:15403908-15403927 Msa0010260:three_prime_UTR 45.0%
!! GCTGAGTGTTACTTCCATCA+AGG + chr1_1:15403940-15403959 Msa0010260:three_prime_UTR 45.0%
!! AGTGTTACTTCCATCAAGGG+TGG + chr1_1:15403944-15403963 Msa0010260:three_prime_UTR 45.0%
CTCTACGCTGTCAACAAAGT+CGG - chr1_1:15404017-15404036 None:intergenic 45.0%
TATGGTTGGGCAATCGGAGT+AGG - chr1_1:15400610-15400629 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1_1:15400661-15400680 None:intergenic 50.0%
GTTGTAGCGTCATCACTGAG+AGG - chr1_1:15403456-15403475 None:intergenic 50.0%
! GTGATGACGCTACAACACCA+TGG + chr1_1:15403460-15403479 Msa0010260:CDS 50.0%
TCAGATGAATGAAGGGGAGC+GGG + chr1_1:15403497-15403516 Msa0010260:CDS 50.0%
!! GGCATCTGATAATGGCACCA+AGG + chr1_1:15403627-15403646 Msa0010260:three_prime_UTR 50.0%
ATTCTGGGCTGAATTGGCTG+GGG + chr1_1:15403675-15403694 Msa0010260:three_prime_UTR 50.0%
ATACATGCGACTGCTGGGTA+GGG - chr1_1:15403767-15403786 None:intergenic 50.0%
TGGAGATACATGCGACTGCT+GGG - chr1_1:15403772-15403791 None:intergenic 50.0%
ATGGAGATACATGCGACTGC+TGG - chr1_1:15403773-15403792 None:intergenic 50.0%
GAAGAGAGCAAATGCAGCAG+AGG + chr1_1:15403839-15403858 Msa0010260:three_prime_UTR 50.0%
! CGATTTGGAGTGACAACGGA+AGG + chr1_1:15403912-15403931 Msa0010260:three_prime_UTR 50.0%
GGAGTGACAACGGAAGGAAT+TGG + chr1_1:15403918-15403937 Msa0010260:three_prime_UTR 50.0%
! AGTCTGGATGGTGACGATGT+CGG - chr1_1:15403970-15403989 None:intergenic 50.0%
GCTGTCAACAAAGTCGGCAT+CGG - chr1_1:15404011-15404030 None:intergenic 50.0%
CGACTTTGTTGACAGCGTAG+AGG + chr1_1:15404015-15404034 Msa0010260:three_prime_UTR 50.0%
TATGGTTGGGCAATCGGAGT+AGG - chr1_1:15400610-15400629 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1_1:15400661-15400680 None:intergenic 50.0%
GTTGTAGCGTCATCACTGAG+AGG - chr1_1:15403456-15403475 None:intergenic 50.0%
! GTGATGACGCTACAACACCA+TGG + chr1_1:15403460-15403479 Msa0010260:CDS 50.0%
TCAGATGAATGAAGGGGAGC+GGG + chr1_1:15403497-15403516 Msa0010260:CDS 50.0%
!! GGCATCTGATAATGGCACCA+AGG + chr1_1:15403627-15403646 Msa0010260:three_prime_UTR 50.0%
ATTCTGGGCTGAATTGGCTG+GGG + chr1_1:15403675-15403694 Msa0010260:three_prime_UTR 50.0%
ATACATGCGACTGCTGGGTA+GGG - chr1_1:15403767-15403786 None:intergenic 50.0%
TGGAGATACATGCGACTGCT+GGG - chr1_1:15403772-15403791 None:intergenic 50.0%
ATGGAGATACATGCGACTGC+TGG - chr1_1:15403773-15403792 None:intergenic 50.0%
GAAGAGAGCAAATGCAGCAG+AGG + chr1_1:15403839-15403858 Msa0010260:three_prime_UTR 50.0%
! CGATTTGGAGTGACAACGGA+AGG + chr1_1:15403912-15403931 Msa0010260:three_prime_UTR 50.0%
GGAGTGACAACGGAAGGAAT+TGG + chr1_1:15403918-15403937 Msa0010260:three_prime_UTR 50.0%
! AGTCTGGATGGTGACGATGT+CGG - chr1_1:15403970-15403989 None:intergenic 50.0%
GCTGTCAACAAAGTCGGCAT+CGG - chr1_1:15404011-15404030 None:intergenic 50.0%
CGACTTTGTTGACAGCGTAG+AGG + chr1_1:15404015-15404034 Msa0010260:three_prime_UTR 50.0%
GTTGGGCAATCGGAGTAGGA+CGG - chr1_1:15400606-15400625 None:intergenic 55.0%
GAGAGAGAGAGAGAGGAAGC+CGG - chr1_1:15400656-15400675 None:intergenic 55.0%
!! GGGATCTGACGGGTGTTTTG+TGG + chr1_1:15401435-15401454 Msa0010260:intron 55.0%
ACGCTACAACACCATGGCAG+TGG + chr1_1:15403466-15403485 Msa0010260:CDS 55.0%
CGCTACAACACCATGGCAGT+GGG + chr1_1:15403467-15403486 Msa0010260:CDS 55.0%
ATGCAGGGCAGCTGGATACA+GGG + chr1_1:15403534-15403553 Msa0010260:CDS 55.0%
TTCTGGGCTGAATTGGCTGG+GGG + chr1_1:15403676-15403695 Msa0010260:three_prime_UTR 55.0%
ATTGGCTGGGGGAAAGACTC+AGG + chr1_1:15403687-15403706 Msa0010260:three_prime_UTR 55.0%
TTGGCTGGGGGAAAGACTCA+GGG + chr1_1:15403688-15403707 Msa0010260:three_prime_UTR 55.0%
! ATGGCAAAGCGCTACAAGCC+AGG + chr1_1:15403733-15403752 Msa0010260:three_prime_UTR 55.0%
GATACATGCGACTGCTGGGT+AGG - chr1_1:15403768-15403787 None:intergenic 55.0%
GCAGCAATCCGGCAGAAACT+TGG - chr1_1:15403803-15403822 None:intergenic 55.0%
CTGCCATCTGTGCAGCAATC+CGG - chr1_1:15403814-15403833 None:intergenic 55.0%
! TGATGCTCGAGTTGCACGTG+AGG + chr1_1:15403863-15403882 Msa0010260:three_prime_UTR 55.0%
GTTGGGCAATCGGAGTAGGA+CGG - chr1_1:15400606-15400625 None:intergenic 55.0%
GAGAGAGAGAGAGAGGAAGC+CGG - chr1_1:15400656-15400675 None:intergenic 55.0%
!! GGGATCTGACGGGTGTTTTG+TGG + chr1_1:15401435-15401454 Msa0010260:intron 55.0%
ACGCTACAACACCATGGCAG+TGG + chr1_1:15403466-15403485 Msa0010260:CDS 55.0%
CGCTACAACACCATGGCAGT+GGG + chr1_1:15403467-15403486 Msa0010260:CDS 55.0%
ATGCAGGGCAGCTGGATACA+GGG + chr1_1:15403534-15403553 Msa0010260:CDS 55.0%
TTCTGGGCTGAATTGGCTGG+GGG + chr1_1:15403676-15403695 Msa0010260:three_prime_UTR 55.0%
ATTGGCTGGGGGAAAGACTC+AGG + chr1_1:15403687-15403706 Msa0010260:three_prime_UTR 55.0%
TTGGCTGGGGGAAAGACTCA+GGG + chr1_1:15403688-15403707 Msa0010260:three_prime_UTR 55.0%
! ATGGCAAAGCGCTACAAGCC+AGG + chr1_1:15403733-15403752 Msa0010260:three_prime_UTR 55.0%
GATACATGCGACTGCTGGGT+AGG - chr1_1:15403768-15403787 None:intergenic 55.0%
GCAGCAATCCGGCAGAAACT+TGG - chr1_1:15403803-15403822 None:intergenic 55.0%
CTGCCATCTGTGCAGCAATC+CGG - chr1_1:15403814-15403833 None:intergenic 55.0%
! TGATGCTCGAGTTGCACGTG+AGG + chr1_1:15403863-15403882 Msa0010260:three_prime_UTR 55.0%
GGACGGTGGGCAATCAGAGA+TGG - chr1_1:15400589-15400608 None:intergenic 60.0%
GGCAATCGGAGTAGGACGGT+GGG - chr1_1:15400602-15400621 None:intergenic 60.0%
GAGAGAGAGAGGAAGCCGGT+GGG - chr1_1:15400652-15400671 None:intergenic 60.0%
AGAGAGAGAGAGGAAGCCGG+TGG - chr1_1:15400653-15400672 None:intergenic 60.0%
AATGAAGGGGAGCGGGATGC+AGG + chr1_1:15403504-15403523 Msa0010260:CDS 60.0%
ATGAAGGGGAGCGGGATGCA+GGG + chr1_1:15403505-15403524 Msa0010260:CDS 60.0%
GATGCAGGGGACGAGATGCA+GGG + chr1_1:15403519-15403538 Msa0010260:CDS 60.0%
GATGCAGGGCAGCTGGATAC+AGG + chr1_1:15403533-15403552 Msa0010260:CDS 60.0%
CTGGGTAGGGATGATGCACC+TGG - chr1_1:15403754-15403773 None:intergenic 60.0%
CTGCCGGATTGCTGCACAGA+TGG + chr1_1:15403808-15403827 Msa0010260:three_prime_UTR 60.0%
ACGATGTCGGCCACCCTTGA+TGG - chr1_1:15403957-15403976 None:intergenic 60.0%
GGACGGTGGGCAATCAGAGA+TGG - chr1_1:15400589-15400608 None:intergenic 60.0%
GGCAATCGGAGTAGGACGGT+GGG - chr1_1:15400602-15400621 None:intergenic 60.0%
GAGAGAGAGAGGAAGCCGGT+GGG - chr1_1:15400652-15400671 None:intergenic 60.0%
AGAGAGAGAGAGGAAGCCGG+TGG - chr1_1:15400653-15400672 None:intergenic 60.0%
AATGAAGGGGAGCGGGATGC+AGG + chr1_1:15403504-15403523 Msa0010260:CDS 60.0%
ATGAAGGGGAGCGGGATGCA+GGG + chr1_1:15403505-15403524 Msa0010260:CDS 60.0%
GATGCAGGGGACGAGATGCA+GGG + chr1_1:15403519-15403538 Msa0010260:CDS 60.0%
GATGCAGGGCAGCTGGATAC+AGG + chr1_1:15403533-15403552 Msa0010260:CDS 60.0%
CTGGGTAGGGATGATGCACC+TGG - chr1_1:15403754-15403773 None:intergenic 60.0%
CTGCCGGATTGCTGCACAGA+TGG + chr1_1:15403808-15403827 Msa0010260:three_prime_UTR 60.0%
ACGATGTCGGCCACCCTTGA+TGG - chr1_1:15403957-15403976 None:intergenic 60.0%
GGGCAATCGGAGTAGGACGG+TGG - chr1_1:15400603-15400622 None:intergenic 65.0%
TGAAGGGGAGCGGGATGCAG+GGG + chr1_1:15403506-15403525 Msa0010260:CDS 65.0%
GGATGCAGGGGACGAGATGC+AGG + chr1_1:15403518-15403537 Msa0010260:CDS 65.0%
GGGCAATCGGAGTAGGACGG+TGG - chr1_1:15400603-15400622 None:intergenic 65.0%
TGAAGGGGAGCGGGATGCAG+GGG + chr1_1:15403506-15403525 Msa0010260:CDS 65.0%
GGATGCAGGGGACGAGATGC+AGG + chr1_1:15403518-15403537 Msa0010260:CDS 65.0%
GGGACGAGATGCAGGGCAGC+TGG + chr1_1:15403526-15403545 Msa0010260:CDS 70.0%
GGGACGAGATGCAGGGCAGC+TGG + chr1_1:15403526-15403545 Msa0010260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 15400440 15404186 15400440 ID=Msa0010260;Name=Msa0010260
chr1_1 mRNA 15400440 15404186 15400440 ID=Msa0010260-mRNA-1;Parent=Msa0010260;Name=Msa0010260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=319|1|1|1|1|1|3|620|116
chr1_1 exon 15400440 15400782 15400440 ID=Msa0010260-mRNA-1:exon:5637;Parent=Msa0010260-mRNA-1
chr1_1 exon 15401504 15401599 15401504 ID=Msa0010260-mRNA-1:exon:5638;Parent=Msa0010260-mRNA-1
chr1_1 exon 15403336 15404186 15403336 ID=Msa0010260-mRNA-1:exon:5639;Parent=Msa0010260-mRNA-1
chr1_1 five_prime_UTR 15400440 15400758 15400440 ID=Msa0010260-mRNA-1:five_prime_utr;Parent=Msa0010260-mRNA-1
chr1_1 CDS 15400759 15400782 15400759 ID=Msa0010260-mRNA-1:cds;Parent=Msa0010260-mRNA-1
chr1_1 CDS 15401504 15401599 15401504 ID=Msa0010260-mRNA-1:cds;Parent=Msa0010260-mRNA-1
chr1_1 CDS 15403336 15403566 15403336 ID=Msa0010260-mRNA-1:cds;Parent=Msa0010260-mRNA-1
chr1_1 three_prime_UTR 15403567 15404186 15403567 ID=Msa0010260-mRNA-1:three_prime_utr;Parent=Msa0010260-mRNA-1
Gene Sequence

>Msa0010260

ATGGATTCTCCATTTTCAATTTTTATTAGGACACATTCTATTAGGAAAGCTCATGAGAATATTGATGAGACTTTCAAGGCTGCTGTGATTATATTGGCTCACTTTGATCAATATCGTCAGATCATGGCTCCTAAAGAAAACCGTAAGGTCAAAGGTCCACAGATGAAAAAGCGTATGATTATGCCGCATAAGTTGAAACAAGCGACTAAGCATCTACATGCATCAGCTGTGAAGTCGCCTCTCAGTGATGACGCTACAACACCATGGCAGTGGGATGTAAATCAGATGAATGAAGGGGAGCGGGATGCAGGGGACGAGATGCAGGGCAGCTGGATACAGGGCATCATATAA
Protein sequence

>Msa0010260

MDSPFSIFIRTHSIRKAHENIDETFKAAVIILAHFDQYRQIMAPKENRKVKGPQMKKRMIMPHKLKQATKHLHASAVKSPLSDDATTPWQWDVNQMNEGERDAGDEMQGSWIQGII*