Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719090 | RHN69474.1 | 46.875 | 96 | 31 | 3 | 91 | 185 | 1 | 77 | 2.71e-11 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719090 | A0A396IYI1 | 46.875 | 96 | 31 | 3 | 91 | 185 | 1 | 77 | 1.29e-11 | 69.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010260 | Msa0719090 | 0.800229 | 1.589730e-48 | -8.615850e-47 |
| Msa0063040 | Msa0719090 | 0.809192 | 2.136489e-50 | -8.615850e-47 |
| Msa0719080 | Msa0719090 | 0.996650 | 2.564483e-230 | -8.615850e-47 |
| Msa0719090 | Msa0719390 | 0.965364 | 1.650938e-124 | -8.615850e-47 |
| Msa0719090 | Msa0757710 | 0.809167 | 2.162802e-50 | -8.615850e-47 |
| Msa0719090 | Msa0789640 | 0.965005 | 4.786373e-124 | -8.615850e-47 |
| Msa0719090 | Msa0850750 | 0.813831 | 2.097631e-51 | -8.615850e-47 |
| Msa0719090 | Msa0898420 | 0.807170 | 5.762245e-50 | -8.615850e-47 |
| Msa0719090 | Msa0913860 | 0.800899 | 1.160733e-48 | -8.615850e-47 |
| Msa0719090 | Msa0914840 | 0.832309 | 1.017640e-55 | -8.615850e-47 |
| Msa0719090 | Msa0988690 | 0.823003 | 1.750429e-53 | -8.615850e-47 |
| Msa0719090 | Msa1062220 | 0.800041 | 1.735577e-48 | -8.615850e-47 |
| Msa0719090 | Msa1077610 | 0.880202 | 6.664393e-70 | -8.615850e-47 |
| Msa0719090 | Msa1077620 | 0.828507 | 8.649492e-55 | -8.615850e-47 |
| Msa0719090 | Msa1138460 | 0.838768 | 2.362957e-57 | -8.615850e-47 |
| Msa0719090 | Msa1163330 | 0.816592 | 5.108346e-52 | -8.615850e-47 |
| Msa0719090 | Msa1305900 | 0.966863 | 1.712694e-126 | -8.615850e-47 |
| Msa0719090 | Msa1338620 | 0.851356 | 9.362853e-61 | -8.615850e-47 |
| Msa0719090 | Msa1394840 | 0.827014 | 1.976792e-54 | -8.615850e-47 |
| Msa0213670 | Msa0719090 | 0.813779 | 2.153154e-51 | -8.615850e-47 |
| Msa0427350 | Msa0719090 | 0.839099 | 1.940195e-57 | -8.615850e-47 |
| Msa0439160 | Msa0719090 | 0.810824 | 9.512374e-51 | -8.615850e-47 |
| Msa0242320 | Msa0719090 | 0.805466 | 1.316746e-49 | -8.615850e-47 |
| Msa0269940 | Msa0719090 | 0.827395 | 1.601677e-54 | -8.615850e-47 |
| Msa0319860 | Msa0719090 | 0.800804 | 1.213748e-48 | -8.615850e-47 |
| Msa0500520 | Msa0719090 | 0.872595 | 2.818611e-67 | -8.615850e-47 |
| Msa0500530 | Msa0719090 | 0.829959 | 3.843737e-55 | -8.615850e-47 |
| Msa0500540 | Msa0719090 | 0.821999 | 2.994193e-53 | -8.615850e-47 |
| Msa0503840 | Msa0719090 | 0.819180 | 1.329759e-52 | -8.615850e-47 |
| Msa0553900 | Msa0719090 | 0.861453 | 1.015522e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719090 | MtrunA17_Chr3g0125141 | 46.875 | 96 | 31 | 3 | 91 | 185 | 1 | 77 | 2.49e-15 | 69.3 |
| Msa0719090 | MtrunA17_Chr1g0197101 | 71.111 | 45 | 9 | 1 | 58 | 102 | 55 | 95 | 1.78e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTCCTCTTCGATTTC+GGG | 0.072381 | 5_1:-13956204 | Msa0719090:CDS |
| CTGCAACTCAATTGAAATTA+TGG | 0.134418 | 5_1:-13953155 | Msa0719090:CDS |
| TCTCTCTTCCTCTTCGATTT+CGG | 0.206171 | 5_1:-13956205 | Msa0719090:CDS |
| AAGACTCTGGGATGTCTTTA+TGG | 0.210146 | 5_1:-13953114 | Msa0719090:CDS |
| CATAATTTCAATTGAGTTGC+AGG | 0.269649 | 5_1:+13953156 | None:intergenic |
| GAAGGATGCTGTGATTATAT+TGG | 0.291073 | 5_1:-13955259 | Msa0719090:CDS |
| AGATTAGGACACATTCTATT+AGG | 0.291663 | 5_1:-13955311 | Msa0719090:CDS |
| GATGCAGGGCAGCTGGATAT+AGG | 0.321032 | 5_1:-13953279 | Msa0719090:CDS |
| TCTTTATGGTACTTGTGATA+TGG | 0.350156 | 5_1:-13953100 | Msa0719090:CDS |
| TGCAACTCAATTGAAATTAT+GGG | 0.353224 | 5_1:-13953154 | Msa0719090:CDS |
| GATGCAGGGGAGCGAGATGC+AGG | 0.370231 | 5_1:-13953294 | Msa0719090:CDS |
| TCTTGAGTAGGAAACATATA+AGG | 0.375208 | 5_1:-13953227 | Msa0719090:CDS |
| GCAGAAACTTGGCTACTATA+TGG | 0.376503 | 5_1:+13953025 | None:intergenic |
| AATGAAGGGGAGCGGGATGC+AGG | 0.385018 | 5_1:-13953309 | Msa0719090:CDS |
| AAATTATGGGCTGAATCGGC+TGG | 0.391995 | 5_1:-13953141 | Msa0719090:CDS |
| TTTCGGGATTCTCGTGAGAA+AGG | 0.404939 | 5_1:-13956188 | Msa0719090:CDS |
| ATGCAGGGCAGCTGGATATA+GGG | 0.408046 | 5_1:-13953278 | Msa0719090:CDS |
| GAATGATACGGTTGGGCAAT+CGG | 0.414021 | 5_1:+13956268 | None:intergenic |
| GGAAACATATAAGGAGAAGA+TGG | 0.415058 | 5_1:-13953218 | Msa0719090:CDS |
| GGAGCGAGATGCAGGGCAGC+TGG | 0.422901 | 5_1:-13953286 | Msa0719090:CDS |
| TTCGGGATTCTCGTGAGAAA+GGG | 0.443109 | 5_1:-13956187 | Msa0719090:CDS |
| AGAAGGAAGGCATCTGATAA+TGG | 0.449114 | 5_1:-13953195 | Msa0719090:CDS |
| ATGGAGATACATGCGACTGC+TGG | 0.450706 | 5_1:+13953044 | None:intergenic |
| GCTGGGTAGGGATGATGCAC+CGG | 0.458617 | 5_1:+13953062 | None:intergenic |
| CTGCCGGATTGCTGCACAGA+TGG | 0.465200 | 5_1:-13953006 | Msa0719090:CDS |
| ATTGAAATTATGGGCTGAAT+CGG | 0.472148 | 5_1:-13953145 | Msa0719090:CDS |
| TCTGTGGACCTTTGACCTTA+CGG | 0.478369 | 5_1:+13953457 | None:intergenic |
| ATGGCAAAGCGCTACAAGCC+CGG | 0.485664 | 5_1:-13953081 | Msa0719090:CDS |
| GCAGCAATCCGGCAGAAACT+TGG | 0.488047 | 5_1:+13953014 | None:intergenic |
| GATGTAAATCAGATGAATGA+AGG | 0.491907 | 5_1:-13953324 | Msa0719090:CDS |
| TCACTTTGATCAATATCGTC+AGG | 0.494553 | 5_1:-13955235 | Msa0719090:intron |
| CTGCCATCTGTGCAGCAATC+CGG | 0.494932 | 5_1:+13953003 | None:intergenic |
| TGAAGGGGAGCGGGATGCAG+GGG | 0.496456 | 5_1:-13953307 | Msa0719090:CDS |
| AATTATGGGCTGAATCGGCT+GGG | 0.505977 | 5_1:-13953140 | Msa0719090:CDS |
| TTGTGAGAAAAGAGAACAAG+TGG | 0.509089 | 5_1:-13956161 | Msa0719090:CDS |
| AAGAAAAGAATGATACGGTT+GGG | 0.510746 | 5_1:+13956261 | None:intergenic |
| CTGGGTAGGGATGATGCACC+GGG | 0.521803 | 5_1:+13953063 | None:intergenic |
| GAATATTGATGAGACTTTGA+AGG | 0.524229 | 5_1:-13955277 | Msa0719090:CDS |
| TCAGATGAATGAAGGGGAGC+GGG | 0.530853 | 5_1:-13953316 | Msa0719090:CDS |
| ATGAAGGGGAGCGGGATGCA+GGG | 0.531337 | 5_1:-13953308 | Msa0719090:CDS |
| ATTATGGGCTGAATCGGCTG+GGG | 0.531432 | 5_1:-13953139 | Msa0719090:CDS |
| TGGAGATACATGCGACTGCT+GGG | 0.532764 | 5_1:+13953045 | None:intergenic |
| AAGGAGAAGATGGAGAAGGA+AGG | 0.533403 | 5_1:-13953208 | Msa0719090:CDS |
| GAAGAAAAGAATGATACGGT+TGG | 0.541867 | 5_1:+13956260 | None:intergenic |
| GTCGCTTGTTTCAACTTATG+CGG | 0.544680 | 5_1:+13953414 | None:intergenic |
| GATACATGCGACTGCTGGGT+AGG | 0.544893 | 5_1:+13953049 | None:intergenic |
| ACGCTACAACACCATGGCAG+TGG | 0.545516 | 5_1:-13953347 | Msa0719090:CDS |
| CGCTACAACACCATGGCAGT+GGG | 0.546579 | 5_1:-13953346 | Msa0719090:CDS |
| AGTTGCAGGATCAACCTCCT+TGG | 0.556412 | 5_1:+13953170 | None:intergenic |
| ATGTAAATCAGATGAATGAA+GGG | 0.559122 | 5_1:-13953323 | Msa0719090:CDS |
| TATAGTAGCCAAGTTTCTGC+CGG | 0.562202 | 5_1:-13953022 | Msa0719090:CDS |
| ATCAGATGAATGAAGGGGAG+CGG | 0.562953 | 5_1:-13953317 | Msa0719090:CDS |
| ATACATGCGACTGCTGGGTA+GGG | 0.563394 | 5_1:+13953050 | None:intergenic |
| AAAGAAAACCGTAAGGTCAA+AGG | 0.566284 | 5_1:-13953465 | Msa0719090:CDS |
| TACGGTTGGGCAATCGGAGT+AGG | 0.576279 | 5_1:+13956274 | None:intergenic |
| ATGCAGGGGAGCGAGATGCA+GGG | 0.577717 | 5_1:-13953293 | Msa0719090:CDS |
| ATATAAGGAGAAGATGGAGA+AGG | 0.579875 | 5_1:-13953212 | Msa0719090:CDS |
| GATCGAAGAAAAGAATGATA+CGG | 0.586425 | 5_1:+13956256 | None:intergenic |
| GGCAATCGGAGTAGGACGGT+GGG | 0.593012 | 5_1:+13956282 | None:intergenic |
| GGGCAATCGGAGTAGGACGG+TGG | 0.593669 | 5_1:+13956281 | None:intergenic |
| GGCTCCTAAAGAAAACCGTA+AGG | 0.618595 | 5_1:-13953472 | Msa0719090:CDS |
| TGATTTACATCCCACTGCCA+TGG | 0.619006 | 5_1:+13953336 | None:intergenic |
| CGAGAATCCCGAAATCGAAG+AGG | 0.627892 | 5_1:+13956197 | None:intergenic |
| TTATGGGCTGAATCGGCTGG+GGG | 0.634285 | 5_1:-13953138 | Msa0719090:CDS |
| GTTGGGCAATCGGAGTAGGA+CGG | 0.645201 | 5_1:+13956278 | None:intergenic |
| GGCATCTGATAATGGCACCA+AGG | 0.663152 | 5_1:-13953187 | Msa0719090:CDS |
| TGTAAATCAGATGAATGAAG+GGG | 0.684019 | 5_1:-13953322 | Msa0719090:CDS |
| ATCTGATAATGGCACCAAGG+AGG | 0.695887 | 5_1:-13953184 | Msa0719090:CDS |
| GTGATGACGCTACAACACCA+TGG | 0.716250 | 5_1:-13953353 | Msa0719090:CDS |
| GTTGTAGCGTCATCACTGAG+AGG | 0.758690 | 5_1:+13953360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTATGAATATGAT+AGG | - | chr5_1:13953798-13953817 | Msa0719090:intron | 10.0% |
| !! | ATATCATTAAATAATAACAA+TGG | + | chr5_1:13954794-13954813 | None:intergenic | 10.0% |
| !!! | TCTTTTATGAAAGTTAATAA+TGG | - | chr5_1:13953675-13953694 | Msa0719090:intron | 15.0% |
| !!! | TCTTTTATGAAAGTTAATAA+TGG | - | chr5_1:13953675-13953694 | Msa0719090:intron | 15.0% |
| !! | AATAACATAATCTATAAAGA+TGG | + | chr5_1:13954672-13954691 | None:intergenic | 15.0% |
| !! | TCTTTATAGATTATGTTATT+TGG | - | chr5_1:13954672-13954691 | Msa0719090:intron | 15.0% |
| !!! | CTTTATAGATTATGTTATTT+GGG | - | chr5_1:13954673-13954692 | Msa0719090:intron | 15.0% |
| !!! | TTTTGACAAATAATTATATC+AGG | - | chr5_1:13954895-13954914 | Msa0719090:intron | 15.0% |
| !! | ATATATTTATTACTAAACAC+AGG | + | chr5_1:13955576-13955595 | None:intergenic | 15.0% |
| !!! | CTATATTTTCTTATGTTTTT+TGG | - | chr5_1:13955781-13955800 | Msa0719090:intron | 15.0% |
| !! | AGACTTACAAAAATTGAAAA+TGG | + | chr5_1:13953155-13953174 | None:intergenic | 20.0% |
| !! | CTATACGAACATATTAAATA+TGG | - | chr5_1:13953439-13953458 | Msa0719090:CDS | 20.0% |
| !! | GCTTATACAAAAACAATTTA+AGG | + | chr5_1:13953463-13953482 | None:intergenic | 20.0% |
| !!! | TATACTACAGTATTGAATAA+AGG | - | chr5_1:13953756-13953775 | Msa0719090:intron | 20.0% |
| !!! | TGTGATTTATTTTTGGATTT+GGG | - | chr5_1:13953844-13953863 | Msa0719090:intron | 20.0% |
| !!! | AAAGTTGGATTTTTTTGATT+TGG | - | chr5_1:13953944-13953963 | Msa0719090:intron | 20.0% |
| !!! | AAGTTGGATTTTTTTGATTT+GGG | - | chr5_1:13953945-13953964 | Msa0719090:intron | 20.0% |
| !!! | TGATAATTATCATGGTTTTA+CGG | - | chr5_1:13954079-13954098 | Msa0719090:intron | 20.0% |
| !! | ATATCACTTGAGTAAAAATA+TGG | + | chr5_1:13955150-13955169 | None:intergenic | 20.0% |
| !!! | TGATTTATGTGTTTTTGTTT+TGG | - | chr5_1:13955645-13955664 | Msa0719090:intron | 20.0% |
| ! | ATTCCATACATGTATATTTG+TGG | - | chr5_1:13953208-13953227 | Msa0719090:CDS | 25.0% |
| ! | ATGTATATTTGTGGTTGTTA+GGG | - | chr5_1:13953217-13953236 | Msa0719090:CDS | 25.0% |
| ! | CAAATTATTCAATGTGATTG+TGG | - | chr5_1:13953330-13953349 | Msa0719090:CDS | 25.0% |
| !! | GCTATAATCTGTTTTCATAA+TGG | - | chr5_1:13953481-13953500 | Msa0719090:intron | 25.0% |
| ! | CCAAAAATAAATCACAGATA+GGG | + | chr5_1:13953840-13953859 | None:intergenic | 25.0% |
| ! | TCCAAAAATAAATCACAGAT+AGG | + | chr5_1:13953841-13953860 | None:intergenic | 25.0% |
| !!! | CTGTGATTTATTTTTGGATT+TGG | - | chr5_1:13953843-13953862 | Msa0719090:intron | 25.0% |
| !!! | TTATTTTTGGATTTGGGTTT+TGG | - | chr5_1:13953850-13953869 | Msa0719090:intron | 25.0% |
| !!! | GATTTGTGGTTTTTAAAAGT+TGG | - | chr5_1:13953929-13953948 | Msa0719090:intron | 25.0% |
| !!! | GGTTAGTTTGATAATTATCA+TGG | - | chr5_1:13954071-13954090 | Msa0719090:intron | 25.0% |
| !!! | GATAATTATCATGGTTTTAC+GGG | - | chr5_1:13954080-13954099 | Msa0719090:intron | 25.0% |
| ! | TTGTAAGAAACATATCATGA+AGG | + | chr5_1:13954144-13954163 | None:intergenic | 25.0% |
| !! | TGTTCATTTTCAATCACTAA+GGG | - | chr5_1:13954233-13954252 | Msa0719090:intron | 25.0% |
| ! | ATAGCGGTTTAATGTAAAAA+TGG | - | chr5_1:13954309-13954328 | Msa0719090:intron | 25.0% |
| ! | GTTATAACTTTCTTAATGCA+TGG | - | chr5_1:13954346-13954365 | Msa0719090:intron | 25.0% |
| ! | ATTTCAGTTAAAGATCATCA+TGG | + | chr5_1:13954424-13954443 | None:intergenic | 25.0% |
| !! | ATCTTTTCTTTATCTGATTC+AGG | - | chr5_1:13954583-13954602 | Msa0719090:intron | 25.0% |
| ! | ATATTGCACATATATAGACT+AGG | - | chr5_1:13954810-13954829 | Msa0719090:intron | 25.0% |
| ! | ACATATATAGACTAGGTATA+TGG | - | chr5_1:13954817-13954836 | Msa0719090:intron | 25.0% |
| !!! | AATTTAGTTCTTACAATGCT+TGG | - | chr5_1:13954842-13954861 | Msa0719090:intron | 25.0% |
| !! | TTGATTATGCCTTTATTTGA+TGG | - | chr5_1:13954918-13954937 | Msa0719090:intron | 25.0% |
| ! | TAAATAACAACCATTTCACT+TGG | - | chr5_1:13955029-13955048 | Msa0719090:intron | 25.0% |
| ! | AAATAACAACCATTTCACTT+GGG | - | chr5_1:13955030-13955049 | Msa0719090:intron | 25.0% |
| ! | ATAGAAACTACTACCAAATT+CGG | + | chr5_1:13955112-13955131 | None:intergenic | 25.0% |
| ! | TTGAGTAAAAATATGGTATC+AGG | + | chr5_1:13955143-13955162 | None:intergenic | 25.0% |
| !!! | TTATGTGTTTTTGTTTTGGT+TGG | - | chr5_1:13955649-13955668 | Msa0719090:intron | 25.0% |
| ! | TTAGAGCAATAATTAGTGTA+TGG | + | chr5_1:13955708-13955727 | None:intergenic | 25.0% |
| !!! | TATGCAAACTTTAAAACAGA+TGG | + | chr5_1:13955735-13955754 | None:intergenic | 25.0% |
| ! | ATGTAAATCAGATGAATGAA+GGG | - | chr5_1:13955962-13955981 | Msa0719090:intron | 25.0% |
| ! | TGCAACTCAATTGAAATTAT+GGG | - | chr5_1:13956131-13956150 | Msa0719090:intron | 25.0% |
| AAGAAAAGAATGATACGGTT+GGG | + | chr5_1:13953027-13953046 | None:intergenic | 30.0% | |
| GATCGAAGAAAAGAATGATA+CGG | + | chr5_1:13953032-13953051 | None:intergenic | 30.0% | |
| TTTGTAATTACCGATGAAGA+AGG | + | chr5_1:13953183-13953202 | None:intergenic | 30.0% | |
| CAACCACAAATATACATGTA+TGG | + | chr5_1:13953214-13953233 | None:intergenic | 30.0% | |
| CATGTATATTTGTGGTTGTT+AGG | - | chr5_1:13953216-13953235 | Msa0719090:CDS | 30.0% | |
| ! | TTTTCAATTGATTGTGATCG+TGG | - | chr5_1:13953262-13953281 | Msa0719090:CDS | 30.0% |
| CAAATTGTTCAATGTGATTG+CGG | - | chr5_1:13953301-13953320 | Msa0719090:CDS | 30.0% | |
| ATAAAAGAAACTAGCGTTGT+TGG | + | chr5_1:13953663-13953682 | None:intergenic | 30.0% | |
| !! | CCCTATCTGTGATTTATTTT+TGG | - | chr5_1:13953837-13953856 | Msa0719090:intron | 30.0% |
| !! | GTCAAGTAGTGTTGAATTTT+GGG | - | chr5_1:13953886-13953905 | Msa0719090:intron | 30.0% |
| !! | TCAAGTAGTGTTGAATTTTG+GGG | - | chr5_1:13953887-13953906 | Msa0719090:intron | 30.0% |
| AGATTAGGACACATTCTATT+AGG | - | chr5_1:13953974-13953993 | Msa0719090:intron | 30.0% | |
| GAATATTGATGAGACTTTGA+AGG | - | chr5_1:13954008-13954027 | Msa0719090:intron | 30.0% | |
| ! | CTGTTCATTTTCAATCACTA+AGG | - | chr5_1:13954232-13954251 | Msa0719090:intron | 30.0% |
| TTCACTTTGCAAATTGCAAT+TGG | + | chr5_1:13954476-13954495 | None:intergenic | 30.0% | |
| !!! | AGATGTAACTTAGTTTTGTC+TGG | - | chr5_1:13954547-13954566 | Msa0719090:intron | 30.0% |
| TAATCTATAAAGATGGTGAC+TGG | + | chr5_1:13954665-13954684 | None:intergenic | 30.0% | |
| TTGCACTTTCCATCAAATAA+AGG | + | chr5_1:13954930-13954949 | None:intergenic | 30.0% | |
| GCTTTCATATGTTGAATTCT+AGG | - | chr5_1:13954992-13955011 | Msa0719090:intron | 30.0% | |
| ATGAATGATTGAAGTCCTTA+AGG | - | chr5_1:13955672-13955691 | Msa0719090:intron | 30.0% | |
| !!! | TATGTTTTTTGGACAGATCA+TGG | - | chr5_1:13955792-13955811 | Msa0719090:intron | 30.0% |
| GATGTAAATCAGATGAATGA+AGG | - | chr5_1:13955961-13955980 | Msa0719090:intron | 30.0% | |
| TGTAAATCAGATGAATGAAG+GGG | - | chr5_1:13955963-13955982 | Msa0719090:intron | 30.0% | |
| TCTTGAGTAGGAAACATATA+AGG | - | chr5_1:13956058-13956077 | Msa0719090:intron | 30.0% | |
| ! | CATAATTTCAATTGAGTTGC+AGG | + | chr5_1:13956132-13956151 | None:intergenic | 30.0% |
| CTGCAACTCAATTGAAATTA+TGG | - | chr5_1:13956130-13956149 | Msa0719090:intron | 30.0% | |
| ! | ATTGAAATTATGGGCTGAAT+CGG | - | chr5_1:13956140-13956159 | Msa0719090:intron | 30.0% |
| TCTTTATGGTACTTGTGATA+TGG | - | chr5_1:13956185-13956204 | Msa0719090:CDS | 30.0% | |
| GAAGAAAAGAATGATACGGT+TGG | + | chr5_1:13953028-13953047 | None:intergenic | 35.0% | |
| TTGTGAGAAAAGAGAACAAG+TGG | - | chr5_1:13953124-13953143 | Msa0719090:CDS | 35.0% | |
| TTATTCAATGTGATTGTGGC+TGG | - | chr5_1:13953334-13953353 | Msa0719090:CDS | 35.0% | |
| TCATTATCGTGACAAACACT+TGG | - | chr5_1:13953403-13953422 | Msa0719090:CDS | 35.0% | |
| !!! | GGGTTTTGGTTGATTTGATT+TGG | - | chr5_1:13953864-13953883 | Msa0719090:intron | 35.0% |
| !! | GGTCAAGTAGTGTTGAATTT+TGG | - | chr5_1:13953885-13953904 | Msa0719090:intron | 35.0% |
| !! | TTGAATTTTGGGGATCTGAA+GGG | - | chr5_1:13953897-13953916 | Msa0719090:intron | 35.0% |
| GAAGGATGCTGTGATTATAT+TGG | - | chr5_1:13954026-13954045 | Msa0719090:intron | 35.0% | |
| TCACTTTGATCAATATCGTC+AGG | - | chr5_1:13954050-13954069 | Msa0719090:intron | 35.0% | |
| TCACTAAGGGTCTAAACTAT+AGG | - | chr5_1:13954246-13954265 | Msa0719090:intron | 35.0% | |
| CACTAAGGGTCTAAACTATA+GGG | - | chr5_1:13954247-13954266 | Msa0719090:intron | 35.0% | |
| GTCGAATGCTCTAATTATAG+CGG | - | chr5_1:13954293-13954312 | Msa0719090:intron | 35.0% | |
| !! | TGCAGTCAAGTTGACTAAAT+GGG | + | chr5_1:13954517-13954536 | None:intergenic | 35.0% |
| !! | ATGCAGTCAAGTTGACTAAA+TGG | + | chr5_1:13954518-13954537 | None:intergenic | 35.0% |
| ATAAAGATGGTGACTGGTAA+GGG | + | chr5_1:13954659-13954678 | None:intergenic | 35.0% | |
| TATAAAGATGGTGACTGGTA+AGG | + | chr5_1:13954660-13954679 | None:intergenic | 35.0% | |
| CAATGCTTGGAAAATCTTTC+TGG | - | chr5_1:13954855-13954874 | Msa0719090:intron | 35.0% | |
| ACTACTACCAAATTCGGAAA+AGG | + | chr5_1:13955106-13955125 | None:intergenic | 35.0% | |
| ATTAGCACTACAAGCTCAAT+TGG | + | chr5_1:13955515-13955534 | None:intergenic | 35.0% | |
| CTGAAGCATAAGAACAAGTA+TGG | + | chr5_1:13955545-13955564 | None:intergenic | 35.0% | |
| ATTACTAAACACAGGCTCAA+GGG | + | chr5_1:13955568-13955587 | None:intergenic | 35.0% | |
| TATTACTAAACACAGGCTCA+AGG | + | chr5_1:13955569-13955588 | None:intergenic | 35.0% | |
| AGATGAGATGAAATCGACAT+AGG | - | chr5_1:13955621-13955640 | Msa0719090:intron | 35.0% | |
| ! | TTGACCTTACGGTTTTCTTT+AGG | + | chr5_1:13955820-13955839 | None:intergenic | 35.0% |
| AAAGAAAACCGTAAGGTCAA+AGG | - | chr5_1:13955820-13955839 | Msa0719090:intron | 35.0% | |
| !!! | ATCATACGCTTTTTCATCTG+TGG | + | chr5_1:13955847-13955866 | None:intergenic | 35.0% |
| !! | GTGTTTGTTTTCTCTTGAGT+AGG | - | chr5_1:13956046-13956065 | Msa0719090:intron | 35.0% |
| GGAAACATATAAGGAGAAGA+TGG | - | chr5_1:13956067-13956086 | Msa0719090:intron | 35.0% | |
| ATATAAGGAGAAGATGGAGA+AGG | - | chr5_1:13956073-13956092 | Msa0719090:intron | 35.0% | |
| TCTCTCTTCCTCTTCGATTT+CGG | - | chr5_1:13953080-13953099 | Msa0719090:CDS | 40.0% | |
| AGTCTTCTCACCTTCTTCAT+CGG | - | chr5_1:13953170-13953189 | Msa0719090:CDS | 40.0% | |
| ATTGTGATCGTGGCTTATTG+TGG | - | chr5_1:13953272-13953291 | Msa0719090:CDS | 40.0% | |
| !! | CAGATAGGGCTTTGAAAAAC+AGG | + | chr5_1:13953826-13953845 | None:intergenic | 40.0% |
| !! | GTTGAATTTTGGGGATCTGA+AGG | - | chr5_1:13953896-13953915 | Msa0719090:intron | 40.0% |
| !!! | AAGGGTGTTTTGTGGATTTG+TGG | - | chr5_1:13953915-13953934 | Msa0719090:intron | 40.0% |
| ! | TGATTTGGGTGTTGCAGATT+AGG | - | chr5_1:13953959-13953978 | Msa0719090:intron | 40.0% |
| TACCTTGAGAGACCTAATAG+AGG | - | chr5_1:13954271-13954290 | Msa0719090:intron | 40.0% | |
| ! | TAGAGCATTCGACCTCTATT+AGG | + | chr5_1:13954286-13954305 | None:intergenic | 40.0% |
| ATGATAGTAGTCAGCATTGC+AGG | + | chr5_1:13954388-13954407 | None:intergenic | 40.0% | |
| !! | TCAAGTTGACTAAATGGGAC+TGG | + | chr5_1:13954512-13954531 | None:intergenic | 40.0% |
| ! | ATTACAGAAGCGCATGAGTT+AGG | + | chr5_1:13954716-13954735 | None:intergenic | 40.0% |
| ! | GAGATTTTGCCCAAGTGAAA+TGG | + | chr5_1:13955042-13955061 | None:intergenic | 40.0% |
| ! | CGACATTCCTTTTCCGAATT+TGG | - | chr5_1:13955096-13955115 | Msa0719090:intron | 40.0% |
| TGTGCATTCAGCACTACTAA+AGG | - | chr5_1:13955204-13955223 | Msa0719090:intron | 40.0% | |
| GTTTCACAACAAGCACACTA+AGG | - | chr5_1:13955331-13955350 | Msa0719090:intron | 40.0% | |
| AGGAACAGAGGATTTCTCTT+TGG | - | chr5_1:13955351-13955370 | Msa0719090:intron | 40.0% | |
| ! | CAGAGGATTTCTCTTTGGAA+AGG | - | chr5_1:13955356-13955375 | Msa0719090:intron | 40.0% |
| TATGGCGTACATGTTCCTTA+AGG | + | chr5_1:13955690-13955709 | None:intergenic | 40.0% | |
| GTCGCTTGTTTCAACTTATG+CGG | + | chr5_1:13955874-13955893 | None:intergenic | 40.0% | |
| !! | AGAAGGAAGGCATCTGATAA+TGG | - | chr5_1:13956090-13956109 | Msa0719090:intron | 40.0% |
| !! | AAGACTCTGGGATGTCTTTA+TGG | - | chr5_1:13956171-13956190 | Msa0719090:CDS | 40.0% |
| GCAGAAACTTGGCTACTATA+TGG | + | chr5_1:13956263-13956282 | None:intergenic | 40.0% | |
| TATAGTAGCCAAGTTTCTGC+CGG | - | chr5_1:13956263-13956282 | Msa0719090:CDS | 40.0% | |
| GAATGATACGGTTGGGCAAT+CGG | + | chr5_1:13953020-13953039 | None:intergenic | 45.0% | |
| ! | TCTTTTCTTCGATCACCCAC+CGG | - | chr5_1:13953038-13953057 | Msa0719090:CDS | 45.0% |
| CTCTCTTCCTCTTCGATTTC+GGG | - | chr5_1:13953081-13953100 | Msa0719090:CDS | 45.0% | |
| TTTCGGGATTCTCGTGAGAA+AGG | - | chr5_1:13953097-13953116 | Msa0719090:CDS | 45.0% | |
| TTCGGGATTCTCGTGAGAAA+GGG | - | chr5_1:13953098-13953117 | Msa0719090:CDS | 45.0% | |
| GACCTCTATTAGGTCTCTCA+AGG | + | chr5_1:13954276-13954295 | None:intergenic | 45.0% | |
| AAGAGCGAAAGCTCTTACAC+AGG | - | chr5_1:13954970-13954989 | Msa0719090:intron | 45.0% | |
| ACAAGCACACTAAGGAACAG+AGG | - | chr5_1:13955339-13955358 | Msa0719090:intron | 45.0% | |
| GGCTCCTAAAGAAAACCGTA+AGG | - | chr5_1:13955813-13955832 | Msa0719090:intron | 45.0% | |
| TCTGTGGACCTTTGACCTTA+CGG | + | chr5_1:13955831-13955850 | None:intergenic | 45.0% | |
| TGATTTACATCCCACTGCCA+TGG | + | chr5_1:13955952-13955971 | None:intergenic | 45.0% | |
| ATCAGATGAATGAAGGGGAG+CGG | - | chr5_1:13955968-13955987 | Msa0719090:intron | 45.0% | |
| AAGGAGAAGATGGAGAAGGA+AGG | - | chr5_1:13956077-13956096 | Msa0719090:intron | 45.0% | |
| !! | ATCTGATAATGGCACCAAGG+AGG | - | chr5_1:13956101-13956120 | Msa0719090:intron | 45.0% |
| ! | AAATTATGGGCTGAATCGGC+TGG | - | chr5_1:13956144-13956163 | Msa0719090:CDS | 45.0% |
| ! | AATTATGGGCTGAATCGGCT+GGG | - | chr5_1:13956145-13956164 | Msa0719090:CDS | 45.0% |
| CGAGAATCCCGAAATCGAAG+AGG | + | chr5_1:13953091-13953110 | None:intergenic | 50.0% | |
| !!! | GGGATCTGAAGGGTGTTTTG+TGG | - | chr5_1:13953907-13953926 | Msa0719090:intron | 50.0% |
| ! | TGCAATAGCTCTGCCAGTTC+AGG | - | chr5_1:13954945-13954964 | Msa0719090:intron | 50.0% |
| ! | GCAATAGCTCTGCCAGTTCA+GGG | - | chr5_1:13954946-13954965 | Msa0719090:intron | 50.0% |
| CTTTCGCTCTTTCCCTGAAC+TGG | + | chr5_1:13954961-13954980 | None:intergenic | 50.0% | |
| GTTGTAGCGTCATCACTGAG+AGG | + | chr5_1:13955928-13955947 | None:intergenic | 50.0% | |
| ! | GTGATGACGCTACAACACCA+TGG | - | chr5_1:13955932-13955951 | Msa0719090:intron | 50.0% |
| TCAGATGAATGAAGGGGAGC+GGG | - | chr5_1:13955969-13955988 | Msa0719090:intron | 50.0% | |
| ATGCAGGGCAGCTGGATATA+GGG | - | chr5_1:13956007-13956026 | Msa0719090:intron | 50.0% | |
| !! | GGCATCTGATAATGGCACCA+AGG | - | chr5_1:13956098-13956117 | Msa0719090:intron | 50.0% |
| AGTTGCAGGATCAACCTCCT+TGG | + | chr5_1:13956118-13956137 | None:intergenic | 50.0% | |
| ! | ATTATGGGCTGAATCGGCTG+GGG | - | chr5_1:13956146-13956165 | Msa0719090:CDS | 50.0% |
| ATACATGCGACTGCTGGGTA+GGG | + | chr5_1:13956238-13956257 | None:intergenic | 50.0% | |
| TGGAGATACATGCGACTGCT+GGG | + | chr5_1:13956243-13956262 | None:intergenic | 50.0% | |
| ATGGAGATACATGCGACTGC+TGG | + | chr5_1:13956244-13956263 | None:intergenic | 50.0% | |
| GTTGGGCAATCGGAGTAGGA+CGG | + | chr5_1:13953010-13953029 | None:intergenic | 55.0% | |
| TACGGTTGGGCAATCGGAGT+AGG | + | chr5_1:13953014-13953033 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGC+CGG | + | chr5_1:13953060-13953079 | None:intergenic | 55.0% | |
| ACGCTACAACACCATGGCAG+TGG | - | chr5_1:13955938-13955957 | Msa0719090:intron | 55.0% | |
| CGCTACAACACCATGGCAGT+GGG | - | chr5_1:13955939-13955958 | Msa0719090:intron | 55.0% | |
| GATGCAGGGCAGCTGGATAT+AGG | - | chr5_1:13956006-13956025 | Msa0719090:intron | 55.0% | |
| ! | TTATGGGCTGAATCGGCTGG+GGG | - | chr5_1:13956147-13956166 | Msa0719090:CDS | 55.0% |
| ! | ATGGCAAAGCGCTACAAGCC+CGG | - | chr5_1:13956204-13956223 | Msa0719090:CDS | 55.0% |
| GATACATGCGACTGCTGGGT+AGG | + | chr5_1:13956239-13956258 | None:intergenic | 55.0% | |
| GCAGCAATCCGGCAGAAACT+TGG | + | chr5_1:13956274-13956293 | None:intergenic | 55.0% | |
| CTGCCATCTGTGCAGCAATC+CGG | + | chr5_1:13956285-13956304 | None:intergenic | 55.0% | |
| GGCAATCGGAGTAGGACGGT+GGG | + | chr5_1:13953006-13953025 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGAGCCGGT+GGG | + | chr5_1:13953056-13953075 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGAGAGCCGG+TGG | + | chr5_1:13953057-13953076 | None:intergenic | 60.0% | |
| AATGAAGGGGAGCGGGATGC+AGG | - | chr5_1:13955976-13955995 | Msa0719090:intron | 60.0% | |
| ATGAAGGGGAGCGGGATGCA+GGG | - | chr5_1:13955977-13955996 | Msa0719090:intron | 60.0% | |
| ATGCAGGGGAGCGAGATGCA+GGG | - | chr5_1:13955992-13956011 | Msa0719090:intron | 60.0% | |
| ATCGGCTGGGGGAAAGACTC+TGG | - | chr5_1:13956158-13956177 | Msa0719090:CDS | 60.0% | |
| TCGGCTGGGGGAAAGACTCT+GGG | - | chr5_1:13956159-13956178 | Msa0719090:CDS | 60.0% | |
| CTGGGTAGGGATGATGCACC+GGG | + | chr5_1:13956225-13956244 | None:intergenic | 60.0% | |
| GCTGGGTAGGGATGATGCAC+CGG | + | chr5_1:13956226-13956245 | None:intergenic | 60.0% | |
| CTGCCGGATTGCTGCACAGA+TGG | - | chr5_1:13956279-13956298 | Msa0719090:CDS | 60.0% | |
| GGGCAATCGGAGTAGGACGG+TGG | + | chr5_1:13953007-13953026 | None:intergenic | 65.0% | |
| TGAAGGGGAGCGGGATGCAG+GGG | - | chr5_1:13955978-13955997 | Msa0719090:intron | 65.0% | |
| GATGCAGGGGAGCGAGATGC+AGG | - | chr5_1:13955991-13956010 | Msa0719090:intron | 65.0% | |
| GGAGCGAGATGCAGGGCAGC+TGG | - | chr5_1:13955999-13956018 | Msa0719090:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 13952996 | 13956311 | 13952996 | ID=Msa0719090;Name=Msa0719090 |
| chr5_1 | mRNA | 13952996 | 13956311 | 13952996 | ID=Msa0719090-mRNA-1;Parent=Msa0719090;Name=Msa0719090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.33|1|0.5|0.66|3|0|256 |
| chr5_1 | exon | 13956141 | 13956311 | 13956141 | ID=Msa0719090-mRNA-1:exon:5547;Parent=Msa0719090-mRNA-1 |
| chr5_1 | exon | 13955236 | 13955331 | 13955236 | ID=Msa0719090-mRNA-1:exon:5546;Parent=Msa0719090-mRNA-1 |
| chr5_1 | exon | 13952996 | 13953499 | 13952996 | ID=Msa0719090-mRNA-1:exon:5545;Parent=Msa0719090-mRNA-1 |
| chr5_1 | CDS | 13956141 | 13956311 | 13956141 | ID=Msa0719090-mRNA-1:cds;Parent=Msa0719090-mRNA-1 |
| chr5_1 | CDS | 13955236 | 13955331 | 13955236 | ID=Msa0719090-mRNA-1:cds;Parent=Msa0719090-mRNA-1 |
| chr5_1 | CDS | 13952996 | 13953499 | 13952996 | ID=Msa0719090-mRNA-1:cds;Parent=Msa0719090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
