Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011460 | XP_013466487.1 | 93.560 | 854 | 31 | 1 | 1 | 854 | 1 | 830 | 0.0 | 1521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011460 | sp|Q8LLE5|FPP_SOLLC | 54.148 | 458 | 196 | 5 | 185 | 634 | 1 | 452 | 6.50e-135 | 417 |
| Msa0011460 | sp|Q8LLE5|FPP_SOLLC | 40.400 | 250 | 103 | 4 | 644 | 850 | 327 | 573 | 5.26e-35 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011460 | A0A072VGG6 | 93.560 | 854 | 31 | 1 | 1 | 854 | 1 | 830 | 0.0 | 1521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011400 | Msa0011460 | 0.840171 | 1.020954e-57 | -8.615850e-47 |
| Msa0011430 | Msa0011460 | 0.951356 | 2.427553e-109 | -8.615850e-47 |
| Msa0011460 | Msa0151370 | 0.839741 | 1.321571e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011460 | MtrunA17_Chr1g0159951 | 93.560 | 854 | 31 | 1 | 1 | 854 | 1 | 830 | 0.0 | 1521 |
| Msa0011460 | MtrunA17_Chr3g0130811 | 40.533 | 713 | 348 | 14 | 150 | 814 | 39 | 723 | 2.88e-126 | 396 |
| Msa0011460 | MtrunA17_Chr8g0384881 | 47.149 | 456 | 201 | 5 | 169 | 603 | 73 | 509 | 1.55e-109 | 350 |
| Msa0011460 | MtrunA17_Chr8g0384881 | 36.620 | 213 | 75 | 6 | 662 | 851 | 463 | 638 | 9.27e-21 | 97.8 |
| Msa0011460 | MtrunA17_Chr3g0142411 | 42.489 | 233 | 109 | 2 | 160 | 367 | 86 | 318 | 2.34e-43 | 170 |
| Msa0011460 | MtrunA17_Chr1g0156371 | 41.434 | 251 | 119 | 3 | 160 | 382 | 67 | 317 | 2.71e-41 | 164 |
| Msa0011460 | MtrunA17_Chr5g0405291 | 36.087 | 230 | 122 | 2 | 163 | 367 | 70 | 299 | 2.61e-33 | 137 |
| Msa0011460 | MtrunA17_Chr4g0053121 | 37.220 | 223 | 115 | 3 | 162 | 359 | 33 | 255 | 3.58e-28 | 122 |
| Msa0011460 | MtrunA17_Chr5g0401911 | 31.988 | 322 | 156 | 7 | 171 | 461 | 50 | 339 | 1.10e-26 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011460 | AT1G21810.3 | 38.174 | 723 | 291 | 17 | 182 | 854 | 13 | 629 | 1.06e-107 | 345 |
| Msa0011460 | AT1G21810.1 | 38.174 | 723 | 291 | 17 | 182 | 854 | 13 | 629 | 1.06e-107 | 345 |
| Msa0011460 | AT3G05270.3 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 3.29e-91 | 301 |
| Msa0011460 | AT3G05270.3 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.38e-13 | 72.8 |
| Msa0011460 | AT3G05270.2 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 3.29e-91 | 301 |
| Msa0011460 | AT3G05270.2 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.38e-13 | 72.8 |
| Msa0011460 | AT3G05270.1 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 3.29e-91 | 301 |
| Msa0011460 | AT3G05270.1 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.38e-13 | 72.8 |
| Msa0011460 | AT1G77580.1 | 48.688 | 343 | 124 | 6 | 162 | 498 | 22 | 318 | 1.02e-81 | 276 |
| Msa0011460 | AT1G77580.4 | 48.980 | 343 | 123 | 7 | 162 | 498 | 22 | 318 | 1.02e-80 | 276 |
| Msa0011460 | AT1G77580.2 | 48.980 | 343 | 123 | 7 | 162 | 498 | 56 | 352 | 1.83e-80 | 276 |
| Msa0011460 | AT1G77580.3 | 48.980 | 343 | 123 | 7 | 162 | 498 | 56 | 352 | 1.83e-80 | 276 |
| Msa0011460 | AT1G21810.2 | 34.958 | 595 | 248 | 16 | 310 | 854 | 1 | 506 | 6.80e-64 | 223 |
| Msa0011460 | AT1G19835.6 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G19835.5 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G19835.3 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G19835.1 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G19835.4 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G19835.2 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.06e-42 | 167 |
| Msa0011460 | AT1G47900.2 | 36.122 | 263 | 140 | 3 | 162 | 396 | 109 | 371 | 3.78e-38 | 154 |
| Msa0011460 | AT1G47900.3 | 36.122 | 263 | 140 | 3 | 162 | 396 | 109 | 371 | 4.07e-38 | 154 |
| Msa0011460 | AT1G47900.1 | 36.122 | 263 | 140 | 3 | 162 | 396 | 109 | 371 | 4.07e-38 | 154 |
| Msa0011460 | AT4G36120.2 | 39.286 | 224 | 111 | 2 | 169 | 367 | 76 | 299 | 4.75e-36 | 147 |
| Msa0011460 | AT4G36120.1 | 39.286 | 224 | 111 | 2 | 169 | 367 | 76 | 299 | 4.75e-36 | 147 |
| Msa0011460 | AT2G23360.1 | 39.109 | 202 | 98 | 2 | 191 | 367 | 51 | 252 | 1.26e-23 | 107 |
Find 184 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCATTCGGCAAGCTTTC+CGG | 0.169197 | 1_1:+17269168 | None:intergenic |
| TATCGTTTGCTTTGATTTGT+AGG | 0.197140 | 1_1:+17269963 | None:intergenic |
| CCAGAAAACAATAGCATCTT+TGG | 0.227504 | 1_1:-17269149 | Msa0011460:CDS |
| TTGAAGCATCTAATTTCTTC+TGG | 0.228386 | 1_1:+17270769 | None:intergenic |
| AGCTTTCCTCATATTTGTTC+AGG | 0.245451 | 1_1:+17268942 | None:intergenic |
| CAGCAAATGGATGAACTAAA+AGG | 0.264463 | 1_1:-17270126 | Msa0011460:CDS |
| AAAGGAGGCAGTTCAGAAAT+TGG | 0.278157 | 1_1:-17270013 | Msa0011460:CDS |
| AGAGAGACTCCACTTCTTCT+AGG | 0.279649 | 1_1:-17268991 | Msa0011460:CDS |
| TTCTTTGTCAACGCATTTAT+CGG | 0.285448 | 1_1:+17270182 | None:intergenic |
| CTGTTTAACCAAGTCTTCTT+TGG | 0.288311 | 1_1:+17271566 | None:intergenic |
| ATTTATTGTTTCCTTTCATT+TGG | 0.292980 | 1_1:-17273757 | Msa0011460:five_prime_UTR |
| TGCTATTAAGTGTAGGGAAT+TGG | 0.296111 | 1_1:-17269521 | Msa0011460:CDS |
| ATCACGTTCAATAGAAGATT+TGG | 0.299352 | 1_1:+17270743 | None:intergenic |
| TTCTCAGAACTGGCGTGATT+TGG | 0.303370 | 1_1:+17268878 | None:intergenic |
| CCTACTGCATGCATCATAAA+TGG | 0.307358 | 1_1:-17271864 | Msa0011460:CDS |
| AGATGAATGGTTCGGAAAAC+AGG | 0.317621 | 1_1:-17270407 | Msa0011460:CDS |
| TACTAGCTGTCTCAGCTACT+TGG | 0.324182 | 1_1:+17270610 | None:intergenic |
| TCATCAGAGGTAGATGAAAA+TGG | 0.339325 | 1_1:-17271837 | Msa0011460:CDS |
| AAATGAAAGGAAACAATAAA+TGG | 0.348423 | 1_1:+17273759 | None:intergenic |
| CCAGGTGAAGCTGAGAGTTC+AGG | 0.360722 | 1_1:-17272746 | Msa0011460:CDS |
| AAAAGGGAAGTTAGAGAAAG+TGG | 0.369237 | 1_1:-17270109 | Msa0011460:CDS |
| CAGAAAACAATAGCATCTTT+GGG | 0.371111 | 1_1:-17269148 | Msa0011460:CDS |
| AGCCGAAAAGACTCGCGAAT+TGG | 0.372165 | 1_1:-17270832 | Msa0011460:CDS |
| GGAGTCACATCTTCAGTTAA+AGG | 0.375808 | 1_1:-17270031 | Msa0011460:CDS |
| GCAAATAAACTGACTGTAGT+TGG | 0.377130 | 1_1:+17268723 | None:intergenic |
| TCATCTAGATGGAGCACTTA+AGG | 0.382656 | 1_1:-17270916 | Msa0011460:CDS |
| GAAGAAGTGGAGTCTCTCTT+AGG | 0.390406 | 1_1:+17268995 | None:intergenic |
| CCCGCATGAGCAATGATTGC+TGG | 0.393330 | 1_1:+17269058 | None:intergenic |
| GAATGCTAGCAGTGTCAATA+AGG | 0.394242 | 1_1:+17269089 | None:intergenic |
| GCAATGATTGCTGGACTTGC+GGG | 0.396942 | 1_1:+17269067 | None:intergenic |
| GGTAGATGAAAATGGAGAAA+AGG | 0.409058 | 1_1:-17271829 | Msa0011460:CDS |
| GCTTTCCGGCCGCGAGTGCT+AGG | 0.411337 | 1_1:+17269182 | None:intergenic |
| AGGCCAACAGCTAGCTTGTA+TGG | 0.413438 | 1_1:-17269484 | Msa0011460:CDS |
| CTTAGAAGCAGAGGTTGAAA+AGG | 0.424596 | 1_1:-17269566 | Msa0011460:CDS |
| GTTAGAATCAGAGATTGTTA+AGG | 0.425792 | 1_1:-17269671 | Msa0011460:CDS |
| TGCTTTCTAACTCTTCCTCC+AGG | 0.429108 | 1_1:+17269818 | None:intergenic |
| GATAGAGTCACTCATCTAGA+TGG | 0.442078 | 1_1:-17270927 | Msa0011460:CDS |
| CGAAATTGCGGCCAAGTGTA+AGG | 0.444251 | 1_1:-17269632 | Msa0011460:CDS |
| TTCTAGCCGAATACCACTCT+TGG | 0.444679 | 1_1:+17268820 | None:intergenic |
| CGGATAAGAAGAGATGGTTA+TGG | 0.445207 | 1_1:-17272793 | Msa0011460:CDS |
| GCTTTCCTCATATTTGTTCA+GGG | 0.445685 | 1_1:+17268943 | None:intergenic |
| AGTTCTGAGAAGGGTCGAAT+TGG | 0.445703 | 1_1:-17268866 | Msa0011460:CDS |
| TGAGAAGTATTCTGATGAAC+AGG | 0.447757 | 1_1:-17272705 | Msa0011460:intron |
| ATGGTTGGAGACAGAGAATA+TGG | 0.450444 | 1_1:-17270703 | Msa0011460:CDS |
| ATTAGAAGCCGACGTTGATA+AGG | 0.452774 | 1_1:-17269776 | Msa0011460:CDS |
| ATTAGAAGCAGAGGTTGATA+AGG | 0.454787 | 1_1:-17269881 | Msa0011460:CDS |
| GAGTTGATTTGGTGTTTGAT+TGG | 0.455896 | 1_1:-17272828 | Msa0011460:five_prime_UTR |
| AGACAGAGAATATGGCTCTC+AGG | 0.458084 | 1_1:-17270695 | Msa0011460:CDS |
| GGTGTTGATGCAATTTCATC+GGG | 0.459416 | 1_1:+17271891 | None:intergenic |
| GGGGAATCAGCTGAAATCTC+TGG | 0.459529 | 1_1:-17269128 | Msa0011460:CDS |
| AATTCGACCCTTCTCAGAAC+TGG | 0.460941 | 1_1:+17268868 | None:intergenic |
| GTATCAAAGGAATCTTCTAA+TGG | 0.462051 | 1_1:-17271999 | Msa0011460:CDS |
| TTAGCTCTTCCGATTGAACT+AGG | 0.463368 | 1_1:+17270664 | None:intergenic |
| TGTTATTAACATACCTGCTA+TGG | 0.464798 | 1_1:+17271521 | None:intergenic |
| AAAATCTAACTGACGGGTCG+AGG | 0.465615 | 1_1:-17271632 | Msa0011460:CDS |
| CAAATAAACTGACTGTAGTT+GGG | 0.470322 | 1_1:+17268724 | None:intergenic |
| CGCGAACCAAGAGTGGTATT+CGG | 0.471935 | 1_1:-17268826 | Msa0011460:CDS |
| TATTTGCTTAGGCTGGGAAA+AGG | 0.474120 | 1_1:-17271018 | Msa0011460:intron |
| TTCTCTTAAAATAGATCTGA+TGG | 0.475097 | 1_1:-17270286 | Msa0011460:CDS |
| AAGCAGCTTTGTTGAGGAGT+TGG | 0.475100 | 1_1:-17270211 | Msa0011460:CDS |
| CTGCTTGCGTTCTTAGTCTC+GGG | 0.481931 | 1_1:+17270228 | None:intergenic |
| GCTGCTTGCGTTCTTAGTCT+CGG | 0.482246 | 1_1:+17270227 | None:intergenic |
| TTCCGCCAGTTCCTTACACT+TGG | 0.484443 | 1_1:+17269621 | None:intergenic |
| AAGATCTAAATGACGGGTCA+AGG | 0.484562 | 1_1:-17271710 | Msa0011460:CDS |
| AAGAAATTGCTATTAAGTGT+AGG | 0.491211 | 1_1:-17269528 | Msa0011460:CDS |
| CCTGAACTCTCAGCTTCACC+TGG | 0.491399 | 1_1:+17272746 | None:intergenic |
| GAAAGCAAATCTGCAATGCT+TGG | 0.492262 | 1_1:-17269802 | Msa0011460:CDS |
| TCTCCATACAAGCTAGCTGT+TGG | 0.492340 | 1_1:+17269481 | None:intergenic |
| TGCGGCCAAGTGTAAGGAAC+TGG | 0.495454 | 1_1:-17269626 | Msa0011460:CDS |
| GGACGAGATCCTAGTTCAAT+CGG | 0.497284 | 1_1:-17270673 | Msa0011460:CDS |
| AGGTGTTGATGCAATTTCAT+CGG | 0.499092 | 1_1:+17271890 | None:intergenic |
| ATTCTTGAATTGATCAAGCT+CGG | 0.500571 | 1_1:+17270341 | None:intergenic |
| AACTTGACATGGTCACTCTC+AGG | 0.504387 | 1_1:-17270965 | Msa0011460:CDS |
| TGACATCATGACTCAGCAAA+TGG | 0.504440 | 1_1:-17270139 | Msa0011460:CDS |
| AGCAAATGGATGAACTAAAA+GGG | 0.505397 | 1_1:-17270125 | Msa0011460:CDS |
| AGCAGAGGTTGATAAGGAAA+GGG | 0.505776 | 1_1:-17269875 | Msa0011460:CDS |
| AACCAAGTTGTTCTGACTCG+TGG | 0.509651 | 1_1:-17270380 | Msa0011460:CDS |
| AGTCTGCCTCCATGCTCATT+AGG | 0.510576 | 1_1:+17269932 | None:intergenic |
| TGAACGTGATATGCGTCAAA+AGG | 0.511253 | 1_1:-17270730 | Msa0011460:CDS |
| AAGTCTTCTGAGAAGAGTCC+AGG | 0.514823 | 1_1:-17272764 | Msa0011460:CDS |
| AGAAATTGCTATTAAGTGTA+GGG | 0.517982 | 1_1:-17269527 | Msa0011460:CDS |
| AACTTGATGGATCAGCTTGT+CGG | 0.521719 | 1_1:+17270307 | None:intergenic |
| GTAGAAGAAGACGATGAAAG+TGG | 0.521926 | 1_1:+17268917 | None:intergenic |
| ATCAGAGATTGTTAAGGAGA+GGG | 0.522890 | 1_1:-17269665 | Msa0011460:CDS |
| TATTAAGTGTAGGGAATTGG+AGG | 0.523252 | 1_1:-17269518 | Msa0011460:CDS |
| AGAAATTGCGAGGAAGTGTA+AGG | 0.525164 | 1_1:-17269842 | Msa0011460:CDS |
| ATGTGGAGGATGCATTCAAA+TGG | 0.526273 | 1_1:-17269028 | Msa0011460:CDS |
| ATGATGCATGCAGTAGGTAA+AGG | 0.528084 | 1_1:+17271870 | None:intergenic |
| AGGTTGGCTGACGGTAGCTC+CGG | 0.528682 | 1_1:-17268971 | Msa0011460:CDS |
| AAGCAGAGGTTGATAAGGAA+AGG | 0.529296 | 1_1:-17269876 | Msa0011460:CDS |
| TGCATCCCTGAACAAATATG+AGG | 0.529869 | 1_1:-17268948 | Msa0011460:CDS |
| TGTCAATGCCAAAGAAGACT+TGG | 0.532566 | 1_1:-17271574 | Msa0011460:CDS |
| TATCCTCAAGATGAATGGTT+CGG | 0.533006 | 1_1:-17270415 | Msa0011460:CDS |
| ACTAGCTGTCTCAGCTACTT+GGG | 0.534380 | 1_1:+17270611 | None:intergenic |
| TTTCCGAACCATTCATCTTG+AGG | 0.535261 | 1_1:+17270412 | None:intergenic |
| GAGGACCTAGCACTCGCGGC+CGG | 0.536253 | 1_1:-17269187 | Msa0011460:CDS |
| GAGCACTTAAGGAGTGCGTT+AGG | 0.537278 | 1_1:-17270905 | Msa0011460:CDS |
| TGCTTCTAATAAGTCGACCT+TGG | 0.538097 | 1_1:+17269894 | None:intergenic |
| GCTATTGTTAATATATCGAA+TGG | 0.539242 | 1_1:-17271738 | Msa0011460:CDS |
| AGACTCCACTTCTTCTAGGT+TGG | 0.540766 | 1_1:-17268987 | Msa0011460:CDS |
| TGTGATATCCTCAAGATGAA+TGG | 0.547937 | 1_1:-17270420 | Msa0011460:CDS |
| GAAAAGAAGATCTAAATGAC+GGG | 0.554053 | 1_1:-17271716 | Msa0011460:CDS |
| AAATCACGCCAGTTCTGAGA+AGG | 0.555578 | 1_1:-17268876 | Msa0011460:CDS |
| GCGTCAAAAGGTTGAATGGT+TGG | 0.555698 | 1_1:-17270718 | Msa0011460:CDS |
| GTCAGCCAACCTAGAAGAAG+TGG | 0.556265 | 1_1:+17268982 | None:intergenic |
| GGAAAAGAAGATCTAAATGA+CGG | 0.558459 | 1_1:-17271717 | Msa0011460:CDS |
| AGATAGTCAGTCAGACAGTA+CGG | 0.558626 | 1_1:-17270463 | Msa0011460:CDS |
| TTGAAAGCAGGAAGTATCAA+AGG | 0.558653 | 1_1:-17272012 | Msa0011460:intron |
| CTCTCACACGCTATCTTCCA+AGG | 0.559134 | 1_1:-17269911 | Msa0011460:CDS |
| ATATTTGTTCAGGGATGCAC+CGG | 0.560765 | 1_1:+17268952 | None:intergenic |
| GCTATTGTTAATATACCGAA+TGG | 0.561611 | 1_1:-17271663 | Msa0011460:CDS |
| CCAGCAATCATTGCTCATGC+GGG | 0.562517 | 1_1:-17269058 | Msa0011460:CDS |
| GAAATCTCTGGCTACACTTG+AGG | 0.562631 | 1_1:-17269116 | Msa0011460:CDS |
| CCGACACTCGGACTCAAGCT+TGG | 0.562948 | 1_1:+17270557 | None:intergenic |
| GAACGCAAGCAGCTTTGTTG+AGG | 0.566647 | 1_1:-17270217 | Msa0011460:CDS |
| AGCAGAGGTTGAAAAGGAGA+GGG | 0.567149 | 1_1:-17269560 | Msa0011460:CDS |
| GACAGAGAATATGGCTCTCA+GGG | 0.568961 | 1_1:-17270694 | Msa0011460:CDS |
| GTTGCTGAAGAAGCCATAGC+AGG | 0.570953 | 1_1:-17271534 | Msa0011460:intron |
| GATGAATGGTTCGGAAAACA+GGG | 0.571474 | 1_1:-17270406 | Msa0011460:CDS |
| TGAAATTGCAATAAAATGTG+AGG | 0.573293 | 1_1:-17269737 | Msa0011460:CDS |
| TGCGAGGAAGTGTAAGGACC+TGG | 0.573315 | 1_1:-17269836 | Msa0011460:CDS |
| ATCATCAACATCTTCAGCAC+AGG | 0.574007 | 1_1:+17271938 | None:intergenic |
| AATCAGAGATTGTTAAGGAG+AGG | 0.575395 | 1_1:-17269666 | Msa0011460:CDS |
| AGGAAGAAAATCTAACTGAC+GGG | 0.576645 | 1_1:-17271638 | Msa0011460:CDS |
| AAATCTAACTGACGGGTCGA+GGG | 0.578105 | 1_1:-17271631 | Msa0011460:CDS |
| GAAAAGTGAAGAGTGTATTG+AGG | 0.578966 | 1_1:-17270052 | Msa0011460:CDS |
| AATAAAATGTGAGGGTCTAG+AGG | 0.579023 | 1_1:-17269728 | Msa0011460:CDS |
| AGCAATGATTGCTGGACTTG+CGG | 0.580668 | 1_1:+17269066 | None:intergenic |
| AGATCTAAATGACGGGTCAA+GGG | 0.582009 | 1_1:-17271709 | Msa0011460:CDS |
| GGTTGACTTCTTAGAAGCAG+AGG | 0.583228 | 1_1:-17269575 | Msa0011460:CDS |
| ATACCTTTGACTAGTGATGA+TGG | 0.585614 | 1_1:+17273721 | None:intergenic |
| AACTGGCGGAAGAGTTTGAA+AGG | 0.585732 | 1_1:-17269609 | Msa0011460:CDS |
| AGAAAATCGCCTAATGAGCA+TGG | 0.586480 | 1_1:-17269941 | Msa0011460:CDS |
| GCAATCATTGCTCATGCGGG+TGG | 0.586991 | 1_1:-17269055 | Msa0011460:CDS |
| AAGGAAGAAAATCTAACTGA+CGG | 0.586993 | 1_1:-17271639 | Msa0011460:CDS |
| AATAGCAATTTCTTCAGACA+TGG | 0.587597 | 1_1:+17269537 | None:intergenic |
| AGAATACTTCTCAGAATGAG+AGG | 0.588629 | 1_1:+17272715 | None:intergenic |
| AATTGGAGGAAGAGATACTC+AGG | 0.589915 | 1_1:-17269504 | Msa0011460:CDS |
| TGTTAATATACCGAATGGAA+AGG | 0.591354 | 1_1:-17271658 | Msa0011460:CDS |
| GAGAGATTCAACGCAAAATG+AGG | 0.592680 | 1_1:+17270488 | None:intergenic |
| TGTCTTCAACCTCCGACACT+CGG | 0.593276 | 1_1:+17270545 | None:intergenic |
| AATAAATGGAAGCAAATGAA+AGG | 0.595689 | 1_1:+17273773 | None:intergenic |
| TGGAGAAAAGAAAATCAAGC+AGG | 0.595873 | 1_1:-17269464 | Msa0011460:intron |
| ACCAAGTTGTTCTGACTCGT+GGG | 0.598380 | 1_1:-17270379 | Msa0011460:CDS |
| AAGCAGAGGTTGAAAAGGAG+AGG | 0.601507 | 1_1:-17269561 | Msa0011460:CDS |
| GCAAAATGAGGATGAAGCAA+TGG | 0.602511 | 1_1:+17270500 | None:intergenic |
| AGCTTGAGTCCGAGTGTCGG+AGG | 0.604913 | 1_1:-17270554 | Msa0011460:CDS |
| TCCAGCAATCATTGCTCATG+CGG | 0.605279 | 1_1:-17269059 | Msa0011460:CDS |
| ATATGCGTCAAAAGGTTGAA+TGG | 0.606983 | 1_1:-17270722 | Msa0011460:CDS |
| GAAATTGCAATAAAATGTGA+GGG | 0.607539 | 1_1:-17269736 | Msa0011460:CDS |
| TGATCTAAATGACGGGTCAG+TGG | 0.607812 | 1_1:-17271784 | Msa0011460:CDS |
| CAATGACGGATAAGAAGAGA+TGG | 0.608130 | 1_1:-17272799 | Msa0011460:CDS |
| TTGCCATCATCACTAGTCAA+AGG | 0.612083 | 1_1:-17273724 | Msa0011460:intron |
| TTGATTGGTAAACACAATGA+CGG | 0.614407 | 1_1:-17272813 | Msa0011460:exon |
| GGTCGACTTATTAGAAGCAG+AGG | 0.614728 | 1_1:-17269890 | Msa0011460:CDS |
| GGCTGCGTCAGACGAAATTG+CGG | 0.615682 | 1_1:-17269644 | Msa0011460:CDS |
| TACGGAGAGGCTAACTGCGG+TGG | 0.617100 | 1_1:-17270445 | Msa0011460:CDS |
| CATAAATGGTGGTTCATCAG+AGG | 0.620066 | 1_1:-17271850 | Msa0011460:CDS |
| CCATTTATGATGCATGCAGT+AGG | 0.620188 | 1_1:+17271864 | None:intergenic |
| AGAACTGGCGTGATTTGGCA+AGG | 0.622883 | 1_1:+17268883 | None:intergenic |
| ACTGAACTGAACCAAATGAA+AGG | 0.625276 | 1_1:+17273746 | None:intergenic |
| CTTTGTCGCAAGAAATTGCG+AGG | 0.632365 | 1_1:-17269852 | Msa0011460:CDS |
| TCAGGAGGACCTAGCACTCG+CGG | 0.635445 | 1_1:-17269191 | Msa0011460:intron |
| GTTTGAAAGGAAATGTGCGA+AGG | 0.637081 | 1_1:-17269596 | Msa0011460:CDS |
| AATCACGCCAGTTCTGAGAA+GGG | 0.639029 | 1_1:-17268875 | Msa0011460:CDS |
| CTCATGCGGGTGGAGAGATG+TGG | 0.640653 | 1_1:-17269045 | Msa0011460:CDS |
| GCCCACGAGTCAGAACAACT+TGG | 0.642821 | 1_1:+17270378 | None:intergenic |
| AAGCCGACGTTGATAAGGAG+AGG | 0.644803 | 1_1:-17269771 | Msa0011460:CDS |
| ACTTCTTCTAGGTTGGCTGA+CGG | 0.645634 | 1_1:-17268980 | Msa0011460:CDS |
| GTCACATCTTCAGTTAAAGG+AGG | 0.646496 | 1_1:-17270028 | Msa0011460:CDS |
| GGAGGCAGTTCAGAAATTGG+AGG | 0.651234 | 1_1:-17270010 | Msa0011460:CDS |
| TTTAAAGAAGAAACTTGACA+TGG | 0.658460 | 1_1:-17270976 | Msa0011460:CDS |
| CCAAGCTTGAGTCCGAGTGT+CGG | 0.663975 | 1_1:-17270557 | Msa0011460:CDS |
| ATGCGGGTGGAGAGATGTGG+AGG | 0.668639 | 1_1:-17269042 | Msa0011460:CDS |
| GGCCAAGTGTAAGGAACTGG+CGG | 0.672251 | 1_1:-17269623 | Msa0011460:CDS |
| GTTCCTCTCCTTATCAACGT+CGG | 0.677034 | 1_1:+17269768 | None:intergenic |
| ACTGCATGCATCATAAATGG+TGG | 0.679538 | 1_1:-17271861 | Msa0011460:CDS |
| GTCAGTCAGACAGTACGGAG+AGG | 0.705314 | 1_1:-17270458 | Msa0011460:CDS |
| AGAAAACAATAGCATCTTTG+GGG | 0.712210 | 1_1:-17269147 | Msa0011460:CDS |
| GTTCTTAGTCTCGGGCAATG+CGG | 0.727474 | 1_1:+17270236 | None:intergenic |
| GAGGAAGTGTAAGGACCTGG+AGG | 0.738472 | 1_1:-17269833 | Msa0011460:CDS |
| AAATCGCCTAATGAGCATGG+AGG | 0.744978 | 1_1:-17269938 | Msa0011460:CDS |
| CAGTACGGAGAGGCTAACTG+CGG | 0.752055 | 1_1:-17270448 | Msa0011460:CDS |
| ATGAATGGTTCGGAAAACAG+GGG | 0.762929 | 1_1:-17270405 | Msa0011460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTATTTCATAAAAAT+AGG | - | chr1_1:17273101-17273120 | Msa0011460:intron | 10.0% |
| !!! | AAAAGAACTGTTTTTTATTT+TGG | - | chr1_1:17268862-17268881 | Msa0011460:CDS | 15.0% |
| !!! | AAAGAACTGTTTTTTATTTT+GGG | - | chr1_1:17268863-17268882 | Msa0011460:CDS | 15.0% |
| !!! | AAATTTTGTATAGGAAAAAT+AGG | - | chr1_1:17269003-17269022 | Msa0011460:CDS | 15.0% |
| !!! | TTTAAATTTGAATTTTGTGT+AGG | - | chr1_1:17269283-17269302 | Msa0011460:intron | 15.0% |
| !! | TGTCATAATAATATAGTAAT+AGG | - | chr1_1:17270103-17270122 | Msa0011460:CDS | 15.0% |
| !!! | GAAAGTATTTTTTTATCATT+AGG | - | chr1_1:17270329-17270348 | Msa0011460:CDS | 15.0% |
| !!! | TAGAATTATTTTTCTTACAT+TGG | - | chr1_1:17271348-17271367 | Msa0011460:intron | 15.0% |
| !! | ATTTCATAAAAATAGGTTAT+TGG | - | chr1_1:17273108-17273127 | Msa0011460:intron | 15.0% |
| !!! | GTTATATTTTGCTTTTATTT+TGG | - | chr1_1:17273174-17273193 | Msa0011460:intron | 15.0% |
| !! | AAATGAAAGGAAACAATAAA+TGG | + | chr1_1:17268732-17268751 | None:intergenic | 20.0% |
| !! | ATTTATTGTTTCCTTTCATT+TGG | - | chr1_1:17268731-17268750 | Msa0011460:three_prime_UTR | 20.0% |
| !!! | GGTAAAGATTAGATTTTTAT+GGG | - | chr1_1:17268884-17268903 | Msa0011460:CDS | 20.0% |
| !! | CAAAATGTAATATTACTGTT+TGG | - | chr1_1:17269257-17269276 | Msa0011460:intron | 20.0% |
| !! | TTTATTCTTATAACCAAAGT+TGG | - | chr1_1:17269356-17269375 | Msa0011460:intron | 20.0% |
| !!! | AAAAAGTGTATTTTTGTTTC+TGG | - | chr1_1:17269458-17269477 | Msa0011460:intron | 20.0% |
| !!! | AAAAGTGTATTTTTGTTTCT+GGG | - | chr1_1:17269459-17269478 | Msa0011460:intron | 20.0% |
| !! | TTGAATTTCAATTTCATGTA+TGG | - | chr1_1:17269859-17269878 | Msa0011460:CDS | 20.0% |
| !! | AATAACATCCAAGATATTAT+AGG | - | chr1_1:17273133-17273152 | Msa0011460:intron | 20.0% |
| !! | ATATCAAACCTATAATATCT+TGG | + | chr1_1:17273144-17273163 | None:intergenic | 20.0% |
| !! | GGGTAAAGATTAGATTTTTA+TGG | - | chr1_1:17268883-17268902 | Msa0011460:CDS | 25.0% |
| ! | TTGGGTCAGAAAATTTAATT+TGG | - | chr1_1:17268968-17268987 | Msa0011460:CDS | 25.0% |
| !!! | TTTTGTTTCTAGGTTTTTGT+TGG | - | chr1_1:17269186-17269205 | Msa0011460:CDS | 25.0% |
| !! | TTGAATTTTGTGTAGGAAAA+TGG | - | chr1_1:17269290-17269309 | Msa0011460:intron | 25.0% |
| !! | TGAATTTTGTGTAGGAAAAT+GGG | - | chr1_1:17269291-17269310 | Msa0011460:intron | 25.0% |
| ! | CTAGCATAACTAAAAAAATG+TGG | + | chr1_1:17270150-17270169 | None:intergenic | 25.0% |
| ! | GAAAAAGATGATCTAAATGA+CGG | - | chr1_1:17270696-17270715 | Msa0011460:CDS | 25.0% |
| ! | AAAAAGATGATCTAAATGAC+GGG | - | chr1_1:17270697-17270716 | Msa0011460:CDS | 25.0% |
| ! | GCTATTGTTAATATATCGAA+TGG | - | chr1_1:17270750-17270769 | Msa0011460:CDS | 25.0% |
| ! | ATCAAGTAATAGAGTATAGT+TGG | + | chr1_1:17271039-17271058 | None:intergenic | 25.0% |
| ! | CTCAATAAGACTACAAAAAA+GGG | + | chr1_1:17271440-17271459 | None:intergenic | 25.0% |
| !!! | GCCTTTTTATTTATTTGCTT+AGG | - | chr1_1:17271459-17271478 | Msa0011460:intron | 25.0% |
| ! | GCCTAAGCAAATAAATAAAA+AGG | + | chr1_1:17271463-17271482 | None:intergenic | 25.0% |
| !!! | TTTTATTTATTTGCTTAGGC+TGG | - | chr1_1:17271463-17271482 | Msa0011460:intron | 25.0% |
| ! | TTTATTTATTTGCTTAGGCT+GGG | - | chr1_1:17271464-17271483 | Msa0011460:intron | 25.0% |
| ! | TTTAAAGAAGAAACTTGACA+TGG | - | chr1_1:17271512-17271531 | Msa0011460:intron | 25.0% |
| !!! | TCTATTTTAAGAGAACTTGA+TGG | + | chr1_1:17272197-17272216 | None:intergenic | 25.0% |
| ! | TTCTCTTAAAATAGATCTGA+TGG | - | chr1_1:17272202-17272221 | Msa0011460:intron | 25.0% |
| ! | TGAAATTGCAATAAAATGTG+AGG | - | chr1_1:17272751-17272770 | Msa0011460:CDS | 25.0% |
| ! | GAAATTGCAATAAAATGTGA+GGG | - | chr1_1:17272752-17272771 | Msa0011460:CDS | 25.0% |
| !! | AAGAAATTGCTATTAAGTGT+AGG | - | chr1_1:17272960-17272979 | Msa0011460:intron | 25.0% |
| !! | AGAAATTGCTATTAAGTGTA+GGG | - | chr1_1:17272961-17272980 | Msa0011460:intron | 25.0% |
| ! | TTTCTATGAAGTATAGTTTG+AGG | + | chr1_1:17273085-17273104 | None:intergenic | 25.0% |
| ! | TAGGTTTGATATCATTAACT+AGG | - | chr1_1:17273152-17273171 | Msa0011460:intron | 25.0% |
| ! | TTCTTCCGATTTCAAATATA+AGG | + | chr1_1:17273220-17273239 | None:intergenic | 25.0% |
| ! | AGCCACTGTTTTATCATATT+GGG | - | chr1_1:17268950-17268969 | Msa0011460:CDS | 30.0% |
| AATCATTGAGATTGTTGAAG+AGG | - | chr1_1:17269156-17269175 | Msa0011460:CDS | 30.0% | |
| GAAGACTTGACTAGTAAATT+TGG | - | chr1_1:17269232-17269251 | Msa0011460:intron | 30.0% | |
| !!! | TCTTTTGTGTTGAGTTGATT+TGG | - | chr1_1:17269649-17269668 | Msa0011460:CDS | 30.0% |
| TTGATTGGTAAACACAATGA+CGG | - | chr1_1:17269675-17269694 | Msa0011460:CDS | 30.0% | |
| GAAAGATTATCTGTGTTCTT+TGG | - | chr1_1:17269809-17269828 | Msa0011460:CDS | 30.0% | |
| ACAATAGTAACTTCGTAACT+TGG | + | chr1_1:17269911-17269930 | None:intergenic | 30.0% | |
| CAATTACGATATCATCAGAT+TGG | + | chr1_1:17269939-17269958 | None:intergenic | 30.0% | |
| ! | ATCCTTTTGAATATAGCTAC+TGG | - | chr1_1:17270007-17270026 | Msa0011460:CDS | 30.0% |
| ! | TCCTTTTGAATATAGCTACT+GGG | - | chr1_1:17270008-17270027 | Msa0011460:CDS | 30.0% |
| TATCTTTCCTAGAATTGTTC+AGG | - | chr1_1:17270281-17270300 | Msa0011460:CDS | 30.0% | |
| TTATCATTAGGAGTCAAACT+CGG | - | chr1_1:17270341-17270360 | Msa0011460:CDS | 30.0% | |
| GTATCAAAGGAATCTTCTAA+TGG | - | chr1_1:17270489-17270508 | Msa0011460:CDS | 30.0% | |
| GGAAAAGAAGATCTAAATGA+CGG | - | chr1_1:17270771-17270790 | Msa0011460:CDS | 30.0% | |
| GAAAAGAAGATCTAAATGAC+GGG | - | chr1_1:17270772-17270791 | Msa0011460:CDS | 30.0% | |
| GCTATTGTTAATATACCGAA+TGG | - | chr1_1:17270825-17270844 | Msa0011460:CDS | 30.0% | |
| TGTTAATATACCGAATGGAA+AGG | - | chr1_1:17270830-17270849 | Msa0011460:CDS | 30.0% | |
| ! | AGATTTTCTTCCTTTCCATT+CGG | + | chr1_1:17270843-17270862 | None:intergenic | 30.0% |
| AAGGAAGAAAATCTAACTGA+CGG | - | chr1_1:17270849-17270868 | Msa0011460:CDS | 30.0% | |
| TGTTATTAACATACCTGCTA+TGG | + | chr1_1:17270970-17270989 | None:intergenic | 30.0% | |
| CTATTGCTTTCTGTAATTCT+CGG | - | chr1_1:17271005-17271024 | Msa0011460:CDS | 30.0% | |
| ATTACCATTCTATCCTTTCT+TGG | - | chr1_1:17271057-17271076 | Msa0011460:intron | 30.0% | |
| ATATCCAAGAAAGGATAGAA+TGG | + | chr1_1:17271064-17271083 | None:intergenic | 30.0% | |
| TATCAACACATATCCAAGAA+AGG | + | chr1_1:17271073-17271092 | None:intergenic | 30.0% | |
| CAAACAATATATCCAGGAAA+TGG | + | chr1_1:17271399-17271418 | None:intergenic | 30.0% | |
| AAAAAAGGGAGAAAAAGAAG+AGG | + | chr1_1:17271426-17271445 | None:intergenic | 30.0% | |
| GCTCAATAAGACTACAAAAA+AGG | + | chr1_1:17271441-17271460 | None:intergenic | 30.0% | |
| ! | TTGAAGCATCTAATTTCTTC+TGG | + | chr1_1:17271722-17271741 | None:intergenic | 30.0% |
| ATCACGTTCAATAGAAGATT+TGG | + | chr1_1:17271748-17271767 | None:intergenic | 30.0% | |
| TAAAAATCAGAACTGTTGAG+AGG | - | chr1_1:17271844-17271863 | Msa0011460:CDS | 30.0% | |
| AAAAATCAGAACTGTTGAGA+GGG | - | chr1_1:17271845-17271864 | Msa0011460:CDS | 30.0% | |
| ATTCTTGAATTGATCAAGCT+CGG | + | chr1_1:17272150-17272169 | None:intergenic | 30.0% | |
| TTCTTTGTCAACGCATTTAT+CGG | + | chr1_1:17272309-17272328 | None:intergenic | 30.0% | |
| AGCAAATGGATGAACTAAAA+GGG | - | chr1_1:17272363-17272382 | Msa0011460:intron | 30.0% | |
| !! | TATCGTTTGCTTTGATTTGT+AGG | + | chr1_1:17272528-17272547 | None:intergenic | 30.0% |
| GTTAGAATCAGAGATTGTTA+AGG | - | chr1_1:17272817-17272836 | Msa0011460:exon | 30.0% | |
| AATAGCAATTTCTTCAGACA+TGG | + | chr1_1:17272954-17272973 | None:intergenic | 30.0% | |
| ! | CATTTGATCTTTTCTATGTC+AGG | - | chr1_1:17273279-17273298 | Msa0011460:intron | 30.0% |
| CAGAAAACAATAGCATCTTT+GGG | - | chr1_1:17273340-17273359 | Msa0011460:intron | 30.0% | |
| AGAAAACAATAGCATCTTTG+GGG | - | chr1_1:17273341-17273360 | Msa0011460:intron | 30.0% | |
| CAAATAAACTGACTGTAGTT+GGG | + | chr1_1:17273767-17273786 | None:intergenic | 30.0% | |
| ACTGAACTGAACCAAATGAA+AGG | + | chr1_1:17268745-17268764 | None:intergenic | 35.0% | |
| ATACCTTTGACTAGTGATGA+TGG | + | chr1_1:17268770-17268789 | None:intergenic | 35.0% | |
| CAATATGATAAAACAGTGGC+TGG | + | chr1_1:17268951-17268970 | None:intergenic | 35.0% | |
| ! | CAGCCACTGTTTTATCATAT+TGG | - | chr1_1:17268949-17268968 | Msa0011460:CDS | 35.0% |
| GACCCAATATGATAAAACAG+TGG | + | chr1_1:17268955-17268974 | None:intergenic | 35.0% | |
| !!! | AGGAAGTGTGTTTTGTTTCT+AGG | - | chr1_1:17269176-17269195 | Msa0011460:CDS | 35.0% |
| ! | TCTGTAACAAGTTGACAACT+TGG | - | chr1_1:17269502-17269521 | Msa0011460:CDS | 35.0% |
| ! | GACTGATCTTGTGAACATTT+TGG | - | chr1_1:17269602-17269621 | Msa0011460:CDS | 35.0% |
| !! | GAGTTGATTTGGTGTTTGAT+TGG | - | chr1_1:17269660-17269679 | Msa0011460:CDS | 35.0% |
| AGAATACTTCTCAGAATGAG+AGG | + | chr1_1:17269776-17269795 | None:intergenic | 35.0% | |
| !! | TGAGAAGTATTCTGATGAAC+AGG | - | chr1_1:17269783-17269802 | Msa0011460:CDS | 35.0% |
| TTTCATGTATGGAAAACACG+AGG | - | chr1_1:17269870-17269889 | Msa0011460:CDS | 35.0% | |
| ACCCAGTAGCTATATTCAAA+AGG | + | chr1_1:17270012-17270031 | None:intergenic | 35.0% | |
| TCAGAAAAGACCGAAAGAAT+TGG | - | chr1_1:17270212-17270231 | Msa0011460:CDS | 35.0% | |
| CGATTCAAGACCAATTCTTT+CGG | + | chr1_1:17270225-17270244 | None:intergenic | 35.0% | |
| !! | CGAAAGAATTGGTCTTGAAT+CGG | - | chr1_1:17270223-17270242 | Msa0011460:CDS | 35.0% |
| ACTTCTTCCTGAACAATTCT+AGG | + | chr1_1:17270291-17270310 | None:intergenic | 35.0% | |
| TGTGATTGAAACTTGAAAGC+AGG | - | chr1_1:17270464-17270483 | Msa0011460:CDS | 35.0% | |
| !! | TTGAAAGCAGGAAGTATCAA+AGG | - | chr1_1:17270476-17270495 | Msa0011460:CDS | 35.0% |
| !! | AGGTGTTGATGCAATTTCAT+CGG | + | chr1_1:17270601-17270620 | None:intergenic | 35.0% |
| TCATCAGAGGTAGATGAAAA+TGG | - | chr1_1:17270651-17270670 | Msa0011460:CDS | 35.0% | |
| GGTAGATGAAAATGGAGAAA+AGG | - | chr1_1:17270659-17270678 | Msa0011460:CDS | 35.0% | |
| AGGAAGAAAATCTAACTGAC+GGG | - | chr1_1:17270850-17270869 | Msa0011460:CDS | 35.0% | |
| CTGTTTAACCAAGTCTTCTT+TGG | + | chr1_1:17270925-17270944 | None:intergenic | 35.0% | |
| !! | GGATATGTGTTGATAATGTG+CGG | - | chr1_1:17271078-17271097 | Msa0011460:intron | 35.0% |
| !!! | TTTGGATTTTTTGCAGTCAC+TGG | + | chr1_1:17271195-17271214 | None:intergenic | 35.0% |
| ATGAGGAGAAACTTAGGATT+TGG | + | chr1_1:17271213-17271232 | None:intergenic | 35.0% | |
| CCATTTATGAGGAGAAACTT+AGG | + | chr1_1:17271219-17271238 | None:intergenic | 35.0% | |
| CCTAAGTTTCTCCTCATAAA+TGG | - | chr1_1:17271216-17271235 | Msa0011460:intron | 35.0% | |
| TTCTCCTCATAAATGGAGTT+AGG | - | chr1_1:17271223-17271242 | Msa0011460:intron | 35.0% | |
| CTAACCTAACTCCATTTATG+AGG | + | chr1_1:17271230-17271249 | None:intergenic | 35.0% | |
| CTCATAAATGGAGTTAGGTT+AGG | - | chr1_1:17271228-17271247 | Msa0011460:intron | 35.0% | |
| AGTTAGGTTAGGACTTAGAT+AGG | - | chr1_1:17271239-17271258 | Msa0011460:intron | 35.0% | |
| GTTAGGTTAGGACTTAGATA+GGG | - | chr1_1:17271240-17271259 | Msa0011460:intron | 35.0% | |
| GTTTGTATGATTCCATTTCC+TGG | - | chr1_1:17271384-17271403 | Msa0011460:intron | 35.0% | |
| ATATGCGTCAAAAGGTTGAA+TGG | - | chr1_1:17271766-17271785 | Msa0011460:CDS | 35.0% | |
| TGTGATATCCTCAAGATGAA+TGG | - | chr1_1:17272068-17272087 | Msa0011460:intron | 35.0% | |
| TATCCTCAAGATGAATGGTT+CGG | - | chr1_1:17272073-17272092 | Msa0011460:intron | 35.0% | |
| !! | AGATCTGATGGATGATTTTC+TGG | - | chr1_1:17272214-17272233 | Msa0011460:intron | 35.0% |
| !! | GATGGATGATTTTCTGGAAA+TGG | - | chr1_1:17272220-17272239 | Msa0011460:intron | 35.0% |
| CAGCAAATGGATGAACTAAA+AGG | - | chr1_1:17272362-17272381 | Msa0011460:intron | 35.0% | |
| AAAAGGGAAGTTAGAGAAAG+TGG | - | chr1_1:17272379-17272398 | Msa0011460:intron | 35.0% | |
| ! | GAAAAGTGAAGAGTGTATTG+AGG | - | chr1_1:17272436-17272455 | Msa0011460:intron | 35.0% |
| !! | ATTAGAAGCAGAGGTTGATA+AGG | - | chr1_1:17272607-17272626 | Msa0011460:intron | 35.0% |
| AATAAAATGTGAGGGTCTAG+AGG | - | chr1_1:17272760-17272779 | Msa0011460:CDS | 35.0% | |
| AATCAGAGATTGTTAAGGAG+AGG | - | chr1_1:17272822-17272841 | Msa0011460:five_prime_UTR | 35.0% | |
| ATCAGAGATTGTTAAGGAGA+GGG | - | chr1_1:17272823-17272842 | Msa0011460:five_prime_UTR | 35.0% | |
| TGCTATTAAGTGTAGGGAAT+TGG | - | chr1_1:17272967-17272986 | Msa0011460:intron | 35.0% | |
| TATTAAGTGTAGGGAATTGG+AGG | - | chr1_1:17272970-17272989 | Msa0011460:intron | 35.0% | |
| TGGAGAAAAGAAAATCAAGC+AGG | - | chr1_1:17273024-17273043 | Msa0011460:intron | 35.0% | |
| GAAAAGAAAATCAAGCAGGT+TGG | - | chr1_1:17273028-17273047 | Msa0011460:intron | 35.0% | |
| ! | TTGATCTTTTCTATGTCAGG+AGG | - | chr1_1:17273282-17273301 | Msa0011460:intron | 35.0% |
| !! | TGCTATTGTTTTCTGGCATT+CGG | + | chr1_1:17273335-17273354 | None:intergenic | 35.0% |
| ! | CCAAAGATGCTATTGTTTTC+TGG | + | chr1_1:17273342-17273361 | None:intergenic | 35.0% |
| CCAGAAAACAATAGCATCTT+TGG | - | chr1_1:17273339-17273358 | Msa0011460:intron | 35.0% | |
| GCTTTCCTCATATTTGTTCA+GGG | + | chr1_1:17273548-17273567 | None:intergenic | 35.0% | |
| AGCTTTCCTCATATTTGTTC+AGG | + | chr1_1:17273549-17273568 | None:intergenic | 35.0% | |
| GCAAATAAACTGACTGTAGT+TGG | + | chr1_1:17273768-17273787 | None:intergenic | 35.0% | |
| TTGCCATCATCACTAGTCAA+AGG | - | chr1_1:17268764-17268783 | Msa0011460:three_prime_UTR | 40.0% | |
| CTAGCAATCACAACCAACTT+TGG | + | chr1_1:17269372-17269391 | None:intergenic | 40.0% | |
| ! | AACAAGTTGACAACTTGGCT+AGG | - | chr1_1:17269507-17269526 | Msa0011460:CDS | 40.0% |
| ! | ACAAGTTGACAACTTGGCTA+GGG | - | chr1_1:17269508-17269527 | Msa0011460:CDS | 40.0% |
| !! | CAATGACGGATAAGAAGAGA+TGG | - | chr1_1:17269689-17269708 | Msa0011460:CDS | 40.0% |
| CGGATAAGAAGAGATGGTTA+TGG | - | chr1_1:17269695-17269714 | Msa0011460:CDS | 40.0% | |
| TGAATCTGGTACATTGTCTG+GGG | + | chr1_1:17270068-17270087 | None:intergenic | 40.0% | |
| GTGAATCTGGTACATTGTCT+GGG | + | chr1_1:17270069-17270088 | None:intergenic | 40.0% | |
| ! | TGTGTGAGTATTGTAAACCC+CGG | + | chr1_1:17270371-17270390 | None:intergenic | 40.0% |
| ACACAAGTGTTTAGTGCACA+AGG | + | chr1_1:17270394-17270413 | None:intergenic | 40.0% | |
| AGAAAAAAGCAGAGTGTGCA+GGG | + | chr1_1:17270421-17270440 | None:intergenic | 40.0% | |
| AAGAAAAAAGCAGAGTGTGC+AGG | + | chr1_1:17270422-17270441 | None:intergenic | 40.0% | |
| !!! | TACAGCTTTTGAGGTGACAT+CGG | + | chr1_1:17270529-17270548 | None:intergenic | 40.0% |
| ATCATCAACATCTTCAGCAC+AGG | + | chr1_1:17270553-17270572 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGCAATTTCATC+GGG | + | chr1_1:17270600-17270619 | None:intergenic | 40.0% |
| ATGATGCATGCAGTAGGTAA+AGG | + | chr1_1:17270621-17270640 | None:intergenic | 40.0% | |
| CCATTTATGATGCATGCAGT+AGG | + | chr1_1:17270627-17270646 | None:intergenic | 40.0% | |
| CCTACTGCATGCATCATAAA+TGG | - | chr1_1:17270624-17270643 | Msa0011460:CDS | 40.0% | |
| ACTGCATGCATCATAAATGG+TGG | - | chr1_1:17270627-17270646 | Msa0011460:CDS | 40.0% | |
| CATAAATGGTGGTTCATCAG+AGG | - | chr1_1:17270638-17270657 | Msa0011460:CDS | 40.0% | |
| !! | AAGATCTAAATGACGGGTCA+AGG | - | chr1_1:17270778-17270797 | Msa0011460:CDS | 40.0% |
| !! | AGATCTAAATGACGGGTCAA+GGG | - | chr1_1:17270779-17270798 | Msa0011460:CDS | 40.0% |
| TGTCAATGCCAAAGAAGACT+TGG | - | chr1_1:17270914-17270933 | Msa0011460:CDS | 40.0% | |
| GGATGGCAAACAATATATCC+AGG | + | chr1_1:17271405-17271424 | None:intergenic | 40.0% | |
| AAGGGAGAAAAAGAAGAGGA+TGG | + | chr1_1:17271422-17271441 | None:intergenic | 40.0% | |
| TATTTGCTTAGGCTGGGAAA+AGG | - | chr1_1:17271470-17271489 | Msa0011460:intron | 40.0% | |
| GATAGAGTCACTCATCTAGA+TGG | - | chr1_1:17271561-17271580 | Msa0011460:CDS | 40.0% | |
| ! | TCATCTAGATGGAGCACTTA+AGG | - | chr1_1:17271572-17271591 | Msa0011460:CDS | 40.0% |
| ! | TTCCAATTCGCGAGTCTTTT+CGG | + | chr1_1:17271661-17271680 | None:intergenic | 40.0% |
| TGAACGTGATATGCGTCAAA+AGG | - | chr1_1:17271758-17271777 | Msa0011460:CDS | 40.0% | |
| ATGGTTGGAGACAGAGAATA+TGG | - | chr1_1:17271785-17271804 | Msa0011460:CDS | 40.0% | |
| ! | TTAGCTCTTCCGATTGAACT+AGG | + | chr1_1:17271827-17271846 | None:intergenic | 40.0% |
| GCAAAATGAGGATGAAGCAA+TGG | + | chr1_1:17271991-17272010 | None:intergenic | 40.0% | |
| GAGAGATTCAACGCAAAATG+AGG | + | chr1_1:17272003-17272022 | None:intergenic | 40.0% | |
| AGATAGTCAGTCAGACAGTA+CGG | - | chr1_1:17272025-17272044 | Msa0011460:intron | 40.0% | |
| TTTCCGAACCATTCATCTTG+AGG | + | chr1_1:17272079-17272098 | None:intergenic | 40.0% | |
| ! | AGATGAATGGTTCGGAAAAC+AGG | - | chr1_1:17272081-17272100 | Msa0011460:intron | 40.0% |
| ! | GATGAATGGTTCGGAAAACA+GGG | - | chr1_1:17272082-17272101 | Msa0011460:intron | 40.0% |
| ! | ATGAATGGTTCGGAAAACAG+GGG | - | chr1_1:17272083-17272102 | Msa0011460:intron | 40.0% |
| ! | AACTTGATGGATCAGCTTGT+CGG | + | chr1_1:17272184-17272203 | None:intergenic | 40.0% |
| TGACATCATGACTCAGCAAA+TGG | - | chr1_1:17272349-17272368 | Msa0011460:intron | 40.0% | |
| GGAGTCACATCTTCAGTTAA+AGG | - | chr1_1:17272457-17272476 | Msa0011460:intron | 40.0% | |
| GTCACATCTTCAGTTAAAGG+AGG | - | chr1_1:17272460-17272479 | Msa0011460:intron | 40.0% | |
| AAAGGAGGCAGTTCAGAAAT+TGG | - | chr1_1:17272475-17272494 | Msa0011460:intron | 40.0% | |
| AGAAAATCGCCTAATGAGCA+TGG | - | chr1_1:17272547-17272566 | Msa0011460:intron | 40.0% | |
| TGCTTCTAATAAGTCGACCT+TGG | + | chr1_1:17272597-17272616 | None:intergenic | 40.0% | |
| !! | AAGCAGAGGTTGATAAGGAA+AGG | - | chr1_1:17272612-17272631 | Msa0011460:intron | 40.0% |
| !! | AGCAGAGGTTGATAAGGAAA+GGG | - | chr1_1:17272613-17272632 | Msa0011460:intron | 40.0% |
| ! | AGAAATTGCGAGGAAGTGTA+AGG | - | chr1_1:17272646-17272665 | Msa0011460:intron | 40.0% |
| GAAAGCAAATCTGCAATGCT+TGG | - | chr1_1:17272686-17272705 | Msa0011460:intron | 40.0% | |
| ATTAGAAGCCGACGTTGATA+AGG | - | chr1_1:17272712-17272731 | Msa0011460:CDS | 40.0% | |
| GTTTGAAAGGAAATGTGCGA+AGG | - | chr1_1:17272892-17272911 | Msa0011460:intron | 40.0% | |
| CTTAGAAGCAGAGGTTGAAA+AGG | - | chr1_1:17272922-17272941 | Msa0011460:intron | 40.0% | |
| AATTGGAGGAAGAGATACTC+AGG | - | chr1_1:17272984-17273003 | Msa0011460:intron | 40.0% | |
| GAATGCTAGCAGTGTCAATA+AGG | + | chr1_1:17273402-17273421 | None:intergenic | 40.0% | |
| ATGTGGAGGATGCATTCAAA+TGG | - | chr1_1:17273460-17273479 | Msa0011460:intron | 40.0% | |
| ATATTTGTTCAGGGATGCAC+CGG | + | chr1_1:17273539-17273558 | None:intergenic | 40.0% | |
| TGCATCCCTGAACAAATATG+AGG | - | chr1_1:17273540-17273559 | Msa0011460:intron | 40.0% | |
| GTAGAAGAAGACGATGAAAG+TGG | + | chr1_1:17273574-17273593 | None:intergenic | 40.0% | |
| ! | AAGTCTTCTGAGAAGAGTCC+AGG | - | chr1_1:17269724-17269743 | Msa0011460:CDS | 45.0% |
| GGAAGGTGAATTCAGTAGCA+GGG | + | chr1_1:17270046-17270065 | None:intergenic | 45.0% | |
| GAATCTGGTACATTGTCTGG+GGG | + | chr1_1:17270067-17270086 | None:intergenic | 45.0% | |
| CGTGAATCTGGTACATTGTC+TGG | + | chr1_1:17270070-17270089 | None:intergenic | 45.0% | |
| !! | TACTCGCTTTTGCGTGAATC+TGG | + | chr1_1:17270082-17270101 | None:intergenic | 45.0% |
| AGGAGTCAAACTCGGTAATC+CGG | - | chr1_1:17270349-17270368 | Msa0011460:CDS | 45.0% | |
| !!! | ACAGCTTTTGAGGTGACATC+GGG | + | chr1_1:17270528-17270547 | None:intergenic | 45.0% |
| !! | TGATCTAAATGACGGGTCAG+TGG | - | chr1_1:17270704-17270723 | Msa0011460:CDS | 45.0% |
| ! | AAAATCTAACTGACGGGTCG+AGG | - | chr1_1:17270856-17270875 | Msa0011460:CDS | 45.0% |
| ! | AAATCTAACTGACGGGTCGA+GGG | - | chr1_1:17270857-17270876 | Msa0011460:CDS | 45.0% |
| TGCTTGCTTTCTGTAACGTC+TGG | - | chr1_1:17271145-17271164 | Msa0011460:intron | 45.0% | |
| ! | TTTTTGCAGTCACTGGTGAG+TGG | + | chr1_1:17271188-17271207 | None:intergenic | 45.0% |
| AACTTGACATGGTCACTCTC+AGG | - | chr1_1:17271523-17271542 | Msa0011460:intron | 45.0% | |
| GCGTCAAAAGGTTGAATGGT+TGG | - | chr1_1:17271770-17271789 | Msa0011460:CDS | 45.0% | |
| AGACAGAGAATATGGCTCTC+AGG | - | chr1_1:17271793-17271812 | Msa0011460:CDS | 45.0% | |
| GACAGAGAATATGGCTCTCA+GGG | - | chr1_1:17271794-17271813 | Msa0011460:CDS | 45.0% | |
| GGACGAGATCCTAGTTCAAT+CGG | - | chr1_1:17271815-17271834 | Msa0011460:CDS | 45.0% | |
| ACTAGCTGTCTCAGCTACTT+GGG | + | chr1_1:17271880-17271899 | None:intergenic | 45.0% | |
| TACTAGCTGTCTCAGCTACT+TGG | + | chr1_1:17271881-17271900 | None:intergenic | 45.0% | |
| ! | AACCAAGTTGTTCTGACTCG+TGG | - | chr1_1:17272108-17272127 | Msa0011460:intron | 45.0% |
| ! | ACCAAGTTGTTCTGACTCGT+GGG | - | chr1_1:17272109-17272128 | Msa0011460:intron | 45.0% |
| !! | AAGCAGCTTTGTTGAGGAGT+TGG | - | chr1_1:17272277-17272296 | Msa0011460:intron | 45.0% |
| AAATCGCCTAATGAGCATGG+AGG | - | chr1_1:17272550-17272569 | Msa0011460:intron | 45.0% | |
| ! | GGTCGACTTATTAGAAGCAG+AGG | - | chr1_1:17272598-17272617 | Msa0011460:intron | 45.0% |
| CTTTGTCGCAAGAAATTGCG+AGG | - | chr1_1:17272636-17272655 | Msa0011460:intron | 45.0% | |
| TGCTTTCTAACTCTTCCTCC+AGG | + | chr1_1:17272673-17272692 | None:intergenic | 45.0% | |
| GTTCCTCTCCTTATCAACGT+CGG | + | chr1_1:17272723-17272742 | None:intergenic | 45.0% | |
| AACTGGCGGAAGAGTTTGAA+AGG | - | chr1_1:17272879-17272898 | Msa0011460:intron | 45.0% | |
| ! | GGTTGACTTCTTAGAAGCAG+AGG | - | chr1_1:17272913-17272932 | Msa0011460:intron | 45.0% |
| AAGCAGAGGTTGAAAAGGAG+AGG | - | chr1_1:17272927-17272946 | Msa0011460:intron | 45.0% | |
| AGCAGAGGTTGAAAAGGAGA+GGG | - | chr1_1:17272928-17272947 | Msa0011460:intron | 45.0% | |
| TCTCCATACAAGCTAGCTGT+TGG | + | chr1_1:17273010-17273029 | None:intergenic | 45.0% | |
| GAAATCTCTGGCTACACTTG+AGG | - | chr1_1:17273372-17273391 | Msa0011460:intron | 45.0% | |
| AGCAATGATTGCTGGACTTG+CGG | + | chr1_1:17273425-17273444 | None:intergenic | 45.0% | |
| TCCAGCAATCATTGCTCATG+CGG | - | chr1_1:17273429-17273448 | Msa0011460:intron | 45.0% | |
| GAAGAAGTGGAGTCTCTCTT+AGG | + | chr1_1:17273496-17273515 | None:intergenic | 45.0% | |
| AGAGAGACTCCACTTCTTCT+AGG | - | chr1_1:17273497-17273516 | Msa0011460:intron | 45.0% | |
| AGACTCCACTTCTTCTAGGT+TGG | - | chr1_1:17273501-17273520 | Msa0011460:intron | 45.0% | |
| ! | ACTTCTTCTAGGTTGGCTGA+CGG | - | chr1_1:17273508-17273527 | Msa0011460:intron | 45.0% |
| TTCTCAGAACTGGCGTGATT+TGG | + | chr1_1:17273613-17273632 | None:intergenic | 45.0% | |
| !! | AAATCACGCCAGTTCTGAGA+AGG | - | chr1_1:17273612-17273631 | Msa0011460:intron | 45.0% |
| !! | AATCACGCCAGTTCTGAGAA+GGG | - | chr1_1:17273613-17273632 | Msa0011460:intron | 45.0% |
| AATTCGACCCTTCTCAGAAC+TGG | + | chr1_1:17273623-17273642 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGAAGGGTCGAAT+TGG | - | chr1_1:17273622-17273641 | Msa0011460:intron | 45.0% |
| ! | TTTTTCTCGCGAACCAAGAG+TGG | - | chr1_1:17273655-17273674 | Msa0011460:intron | 45.0% |
| TTCTAGCCGAATACCACTCT+TGG | + | chr1_1:17273671-17273690 | None:intergenic | 45.0% | |
| !!! | TTTAAATTTAAATTTTGTAT+AGG | - | chr1_1:17268994-17269013 | Msa0011460:CDS | 5.0% |
| GGGAAGGTGAATTCAGTAGC+AGG | + | chr1_1:17270047-17270066 | None:intergenic | 50.0% | |
| GGAGTCAAACTCGGTAATCC+GGG | - | chr1_1:17270350-17270369 | Msa0011460:CDS | 50.0% | |
| GAGTCAAACTCGGTAATCCG+GGG | - | chr1_1:17270351-17270370 | Msa0011460:CDS | 50.0% | |
| ! | AGCACAGGCTACAGCTTTTG+AGG | + | chr1_1:17270538-17270557 | None:intergenic | 50.0% |
| GTTGCTGAAGAAGCCATAGC+AGG | - | chr1_1:17270954-17270973 | Msa0011460:CDS | 50.0% | |
| ! | GAGCACTTAAGGAGTGCGTT+AGG | - | chr1_1:17271583-17271602 | Msa0011460:CDS | 50.0% |
| AGCCGAAAAGACTCGCGAAT+TGG | - | chr1_1:17271656-17271675 | Msa0011460:CDS | 50.0% | |
| TGTCTTCAACCTCCGACACT+CGG | + | chr1_1:17271946-17271965 | None:intergenic | 50.0% | |
| GTTCTTAGTCTCGGGCAATG+CGG | + | chr1_1:17272255-17272274 | None:intergenic | 50.0% | |
| CTGCTTGCGTTCTTAGTCTC+GGG | + | chr1_1:17272263-17272282 | None:intergenic | 50.0% | |
| GCTGCTTGCGTTCTTAGTCT+CGG | + | chr1_1:17272264-17272283 | None:intergenic | 50.0% | |
| !! | GAACGCAAGCAGCTTTGTTG+AGG | - | chr1_1:17272271-17272290 | Msa0011460:intron | 50.0% |
| GGAGGCAGTTCAGAAATTGG+AGG | - | chr1_1:17272478-17272497 | Msa0011460:intron | 50.0% | |
| AGTCTGCCTCCATGCTCATT+AGG | + | chr1_1:17272559-17272578 | None:intergenic | 50.0% | |
| CTCTCACACGCTATCTTCCA+AGG | - | chr1_1:17272577-17272596 | Msa0011460:intron | 50.0% | |
| ! | AAGCCGACGTTGATAAGGAG+AGG | - | chr1_1:17272717-17272736 | Msa0011460:CDS | 50.0% |
| CGAAATTGCGGCCAAGTGTA+AGG | - | chr1_1:17272856-17272875 | Msa0011460:intron | 50.0% | |
| TTCCGCCAGTTCCTTACACT+TGG | + | chr1_1:17272870-17272889 | None:intergenic | 50.0% | |
| ! | AGGCCAACAGCTAGCTTGTA+TGG | - | chr1_1:17273004-17273023 | Msa0011460:intron | 50.0% |
| GGGGAATCAGCTGAAATCTC+TGG | - | chr1_1:17273360-17273379 | Msa0011460:intron | 50.0% | |
| GCAATGATTGCTGGACTTGC+GGG | + | chr1_1:17273424-17273443 | None:intergenic | 50.0% | |
| CCAGCAATCATTGCTCATGC+GGG | - | chr1_1:17273430-17273449 | Msa0011460:intron | 50.0% | |
| GTCAGCCAACCTAGAAGAAG+TGG | + | chr1_1:17273509-17273528 | None:intergenic | 50.0% | |
| ! | AGAACTGGCGTGATTTGGCA+AGG | + | chr1_1:17273608-17273627 | None:intergenic | 50.0% |
| CGCGAACCAAGAGTGGTATT+CGG | - | chr1_1:17273662-17273681 | Msa0011460:intron | 50.0% | |
| CCTGAACTCTCAGCTTCACC+TGG | + | chr1_1:17269745-17269764 | None:intergenic | 55.0% | |
| CCAGGTGAAGCTGAGAGTTC+AGG | - | chr1_1:17269742-17269761 | Msa0011460:CDS | 55.0% | |
| CTGGTACATTGTCTGGGGGA+AGG | + | chr1_1:17270063-17270082 | None:intergenic | 55.0% | |
| CCAAGCTTGAGTCCGAGTGT+CGG | - | chr1_1:17271931-17271950 | Msa0011460:CDS | 55.0% | |
| GTCAGTCAGACAGTACGGAG+AGG | - | chr1_1:17272030-17272049 | Msa0011460:intron | 55.0% | |
| CAGTACGGAGAGGCTAACTG+CGG | - | chr1_1:17272040-17272059 | Msa0011460:intron | 55.0% | |
| GCCCACGAGTCAGAACAACT+TGG | + | chr1_1:17272113-17272132 | None:intergenic | 55.0% | |
| ! | TGCGAGGAAGTGTAAGGACC+TGG | - | chr1_1:17272652-17272671 | Msa0011460:intron | 55.0% |
| ! | GAGGAAGTGTAAGGACCTGG+AGG | - | chr1_1:17272655-17272674 | Msa0011460:intron | 55.0% |
| GGCTGCGTCAGACGAAATTG+CGG | - | chr1_1:17272844-17272863 | Msa0011460:five_prime_UTR | 55.0% | |
| TGCGGCCAAGTGTAAGGAAC+TGG | - | chr1_1:17272862-17272881 | Msa0011460:intron | 55.0% | |
| GGCCAAGTGTAAGGAACTGG+CGG | - | chr1_1:17272865-17272884 | Msa0011460:intron | 55.0% | |
| CTGGCATTCGGCAAGCTTTC+CGG | + | chr1_1:17273323-17273342 | None:intergenic | 55.0% | |
| CCCGCATGAGCAATGATTGC+TGG | + | chr1_1:17273433-17273452 | None:intergenic | 55.0% | |
| GCAATCATTGCTCATGCGGG+TGG | - | chr1_1:17273433-17273452 | Msa0011460:intron | 55.0% | |
| CCGACACTCGGACTCAAGCT+TGG | + | chr1_1:17271934-17271953 | None:intergenic | 60.0% | |
| !! | AGCTTGAGTCCGAGTGTCGG+AGG | - | chr1_1:17271934-17271953 | Msa0011460:CDS | 60.0% |
| TACGGAGAGGCTAACTGCGG+TGG | - | chr1_1:17272043-17272062 | Msa0011460:intron | 60.0% | |
| TCAGGAGGACCTAGCACTCG+CGG | - | chr1_1:17273297-17273316 | Msa0011460:intron | 60.0% | |
| CTCATGCGGGTGGAGAGATG+TGG | - | chr1_1:17273443-17273462 | Msa0011460:intron | 60.0% | |
| ATGCGGGTGGAGAGATGTGG+AGG | - | chr1_1:17273446-17273465 | Msa0011460:intron | 60.0% | |
| ! | AGGTTGGCTGACGGTAGCTC+CGG | - | chr1_1:17273517-17273536 | Msa0011460:intron | 60.0% |
| GAGGACCTAGCACTCGCGGC+CGG | - | chr1_1:17273301-17273320 | Msa0011460:intron | 70.0% | |
| GCTTTCCGGCCGCGAGTGCT+AGG | + | chr1_1:17273309-17273328 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17268716 | 17273794 | 17268716 | ID=Msa0011460;Name=Msa0011460 |
| chr1_1 | mRNA | 17268716 | 17273794 | 17268716 | ID=Msa0011460-mRNA-1;Parent=Msa0011460;Name=Msa0011460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|0.8|1|0.75|0.6|5|98|854 |
| chr1_1 | exon | 17268716 | 17269209 | 17268716 | ID=Msa0011460-mRNA-1:exon:6277;Parent=Msa0011460-mRNA-1 |
| chr1_1 | exon | 17269465 | 17271029 | 17269465 | ID=Msa0011460-mRNA-1:exon:6276;Parent=Msa0011460-mRNA-1 |
| chr1_1 | exon | 17271535 | 17272024 | 17271535 | ID=Msa0011460-mRNA-1:exon:6275;Parent=Msa0011460-mRNA-1 |
| chr1_1 | exon | 17272706 | 17272869 | 17272706 | ID=Msa0011460-mRNA-1:exon:6274;Parent=Msa0011460-mRNA-1 |
| chr1_1 | exon | 17273725 | 17273794 | 17273725 | ID=Msa0011460-mRNA-1:exon:6273;Parent=Msa0011460-mRNA-1 |
| chr1_1 | five_prime_UTR | 17273725 | 17273794 | 17273725 | ID=Msa0011460-mRNA-1:five_prime_utr;Parent=Msa0011460-mRNA-1 |
| chr1_1 | five_prime_UTR | 17272820 | 17272869 | 17272820 | ID=Msa0011460-mRNA-1:five_prime_utr;Parent=Msa0011460-mRNA-1 |
| chr1_1 | CDS | 17272706 | 17272819 | 17272706 | ID=Msa0011460-mRNA-1:cds;Parent=Msa0011460-mRNA-1 |
| chr1_1 | CDS | 17271535 | 17272024 | 17271535 | ID=Msa0011460-mRNA-1:cds;Parent=Msa0011460-mRNA-1 |
| chr1_1 | CDS | 17269465 | 17271029 | 17269465 | ID=Msa0011460-mRNA-1:cds;Parent=Msa0011460-mRNA-1 |
| chr1_1 | CDS | 17268814 | 17269209 | 17268814 | ID=Msa0011460-mRNA-1:cds;Parent=Msa0011460-mRNA-1 |
| chr1_1 | three_prime_UTR | 17268716 | 17268813 | 17268716 | ID=Msa0011460-mRNA-1:three_prime_utr;Parent=Msa0011460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
