Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151370 | XP_013466487.1 | 95.181 | 830 | 25 | 2 | 1 | 815 | 1 | 830 | 0.0 | 1558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151370 | sp|Q8LLE5|FPP_SOLLC | 54.367 | 458 | 195 | 5 | 160 | 609 | 1 | 452 | 2.99e-135 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151370 | A0A072VGG6 | 95.181 | 830 | 25 | 2 | 1 | 815 | 1 | 830 | 0.0 | 1558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011430 | Msa0151370 | 0.832468 | 9.293864e-56 | -8.615850e-47 |
| Msa0011460 | Msa0151370 | 0.839741 | 1.321571e-57 | -8.615850e-47 |
| Msa0082280 | Msa0151370 | 0.803961 | 2.714773e-49 | -8.615850e-47 |
| Msa0083070 | Msa0151370 | 0.802290 | 6.019094e-49 | -8.615850e-47 |
| Msa0151370 | Msa0526750 | 0.803400 | 3.550598e-49 | -8.615850e-47 |
| Msa0151370 | Msa0552810 | 0.833769 | 4.408183e-56 | -8.615850e-47 |
| Msa0151370 | Msa0566700 | 0.802198 | 6.287016e-49 | -8.615850e-47 |
| Msa0151370 | Msa0687630 | 0.801845 | 7.429576e-49 | -8.615850e-47 |
| Msa0151370 | Msa0746420 | 0.801292 | 9.645916e-49 | -8.615850e-47 |
| Msa0151370 | Msa0784200 | 0.817202 | 3.726674e-52 | -8.615850e-47 |
| Msa0151370 | Msa0818310 | 0.821981 | 3.023890e-53 | -8.615850e-47 |
| Msa0151370 | Msa0858770 | 0.819496 | 1.126818e-52 | -8.615850e-47 |
| Msa0151370 | Msa1126510 | 0.822311 | 2.535232e-53 | -8.615850e-47 |
| Msa0151370 | Msa1126770 | 0.828475 | 8.807959e-55 | -8.615850e-47 |
| Msa0151370 | Msa1127890 | 0.819326 | 1.231464e-52 | -8.615850e-47 |
| Msa0151370 | Msa1165870 | 0.803893 | 2.804565e-49 | -8.615850e-47 |
| Msa0151370 | Msa1166860 | 0.821095 | 4.843086e-53 | -8.615850e-47 |
| Msa0151370 | Msa1210810 | 0.814021 | 1.904560e-51 | -8.615850e-47 |
| Msa0151370 | Msa1307950 | 0.813847 | 2.080269e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151370 | MtrunA17_Chr1g0159951 | 95.181 | 830 | 25 | 2 | 1 | 815 | 1 | 830 | 0.0 | 1558 |
| Msa0151370 | MtrunA17_Chr8g0384881 | 37.727 | 827 | 308 | 20 | 3 | 812 | 2 | 638 | 1.09e-124 | 388 |
| Msa0151370 | MtrunA17_Chr3g0130811 | 39.884 | 692 | 327 | 13 | 146 | 775 | 59 | 723 | 5.55e-118 | 374 |
| Msa0151370 | MtrunA17_Chr3g0142411 | 42.489 | 233 | 109 | 2 | 135 | 342 | 86 | 318 | 7.67e-44 | 171 |
| Msa0151370 | MtrunA17_Chr1g0156371 | 41.434 | 251 | 119 | 3 | 135 | 357 | 67 | 317 | 1.01e-41 | 165 |
| Msa0151370 | MtrunA17_Chr5g0405291 | 36.607 | 224 | 117 | 2 | 144 | 342 | 76 | 299 | 2.66e-33 | 137 |
| Msa0151370 | MtrunA17_Chr4g0053121 | 37.220 | 223 | 115 | 3 | 137 | 334 | 33 | 255 | 1.71e-28 | 123 |
| Msa0151370 | MtrunA17_Chr5g0401911 | 31.988 | 322 | 156 | 7 | 146 | 436 | 50 | 339 | 2.35e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0151370 | AT1G21810.3 | 37.941 | 709 | 298 | 17 | 157 | 815 | 13 | 629 | 3.42e-98 | 319 |
| Msa0151370 | AT1G21810.1 | 37.941 | 709 | 298 | 17 | 157 | 815 | 13 | 629 | 3.42e-98 | 319 |
| Msa0151370 | AT1G77580.1 | 48.980 | 343 | 123 | 6 | 137 | 473 | 22 | 318 | 4.94e-83 | 278 |
| Msa0151370 | AT1G77580.4 | 49.271 | 343 | 122 | 7 | 137 | 473 | 22 | 318 | 6.01e-82 | 278 |
| Msa0151370 | AT1G77580.2 | 49.271 | 343 | 122 | 7 | 137 | 473 | 56 | 352 | 6.60e-82 | 279 |
| Msa0151370 | AT1G77580.3 | 49.271 | 343 | 122 | 7 | 137 | 473 | 56 | 352 | 6.60e-82 | 279 |
| Msa0151370 | AT3G05270.3 | 37.037 | 648 | 316 | 13 | 107 | 721 | 27 | 615 | 3.17e-81 | 273 |
| Msa0151370 | AT3G05270.3 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.76e-13 | 72.8 |
| Msa0151370 | AT3G05270.2 | 37.037 | 648 | 316 | 13 | 107 | 721 | 27 | 615 | 3.17e-81 | 273 |
| Msa0151370 | AT3G05270.2 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.76e-13 | 72.8 |
| Msa0151370 | AT3G05270.1 | 37.037 | 648 | 316 | 13 | 107 | 721 | 27 | 615 | 3.17e-81 | 273 |
| Msa0151370 | AT3G05270.1 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.76e-13 | 72.8 |
| Msa0151370 | AT1G21810.2 | 34.596 | 581 | 255 | 16 | 285 | 815 | 1 | 506 | 6.25e-55 | 198 |
| Msa0151370 | AT1G19835.6 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G19835.5 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G19835.3 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G19835.1 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G19835.4 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G19835.2 | 39.773 | 264 | 127 | 4 | 139 | 371 | 61 | 323 | 1.02e-42 | 168 |
| Msa0151370 | AT1G47900.2 | 30.827 | 399 | 217 | 10 | 3 | 371 | 2 | 371 | 1.85e-39 | 158 |
| Msa0151370 | AT1G47900.3 | 30.827 | 399 | 217 | 10 | 3 | 371 | 2 | 371 | 1.97e-39 | 158 |
| Msa0151370 | AT1G47900.1 | 30.827 | 399 | 217 | 10 | 3 | 371 | 2 | 371 | 1.97e-39 | 158 |
| Msa0151370 | AT4G36120.2 | 39.286 | 224 | 111 | 2 | 144 | 342 | 76 | 299 | 1.72e-36 | 149 |
| Msa0151370 | AT4G36120.1 | 39.286 | 224 | 111 | 2 | 144 | 342 | 76 | 299 | 1.72e-36 | 149 |
| Msa0151370 | AT2G23360.1 | 38.389 | 211 | 105 | 2 | 157 | 342 | 42 | 252 | 1.14e-23 | 107 |
Find 170 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCGTTTGCTTTGATTTGT+AGG | 0.197140 | 1_4:-13477473 | None:intergenic |
| CCAGAAAACAATAGCATCTT+TGG | 0.227504 | 1_4:+13478288 | Msa0151370:intron |
| TTGAAGCATCTAATTTCTTC+TGG | 0.228386 | 1_4:-13476667 | None:intergenic |
| AGCTTTCCTCATATTTGTTC+AGG | 0.245451 | 1_4:-13478495 | None:intergenic |
| CAGCAAATGGATGAACTAAA+AGG | 0.264463 | 1_4:+13477310 | Msa0151370:CDS |
| AAAGGAGGCAGTTCAGAAAT+TGG | 0.278157 | 1_4:+13477423 | Msa0151370:CDS |
| AGAGAGACTCCACTTCTTCT+AGG | 0.279649 | 1_4:+13478446 | Msa0151370:CDS |
| TTCTTTGTCAACGCATTTAT+CGG | 0.285448 | 1_4:-13477254 | None:intergenic |
| CTGTTTAACCAAGTCTTCTT+TGG | 0.288311 | 1_4:-13475871 | None:intergenic |
| CCTACTACATGCATCATAAA+TGG | 0.290764 | 1_4:+13475648 | Msa0151370:CDS |
| ATCACGTTCAATAGAAGATT+TGG | 0.299352 | 1_4:-13476693 | None:intergenic |
| TTCTCAGAACTGGCGTGATT+TGG | 0.303370 | 1_4:-13478559 | None:intergenic |
| AGATGAATGGTTCGGAAAAC+AGG | 0.317621 | 1_4:+13477029 | Msa0151370:CDS |
| TCATCAGAGGTAGATGAAAA+TGG | 0.339325 | 1_4:+13475675 | Msa0151370:CDS |
| TGCAATGAAGTGTAGGGAAT+TGG | 0.368718 | 1_4:+13477915 | Msa0151370:CDS |
| TACTAGCTGTCTCAGCTGCT+TGG | 0.369218 | 1_4:-13476826 | None:intergenic |
| CAGAAAACAATAGCATCTTT+GGG | 0.371111 | 1_4:+13478289 | Msa0151370:intron |
| AGCCGAAAAGACTCGCGAAT+TGG | 0.372165 | 1_4:+13476604 | Msa0151370:CDS |
| GGAGTCACATCTTCAGTTAA+AGG | 0.375808 | 1_4:+13477405 | Msa0151370:CDS |
| CCGGGTGAAGCTGAGAGTTC+AGG | 0.379981 | 1_4:+13474764 | Msa0151370:CDS |
| TCATCTAGATGGAGCACTTA+AGG | 0.382656 | 1_4:+13476520 | Msa0151370:CDS |
| ACTAGCTGTCTCAGCTGCTT+GGG | 0.387288 | 1_4:-13476825 | None:intergenic |
| GAAGAAGTGGAGTCTCTCTT+AGG | 0.390406 | 1_4:-13478442 | None:intergenic |
| CCCGCATGAGCAATGATTGC+TGG | 0.393330 | 1_4:-13478379 | None:intergenic |
| GAATGCTAGCAGTGTCAATA+AGG | 0.394242 | 1_4:-13478348 | None:intergenic |
| GCAATGATTGCTGGACTTGC+GGG | 0.396942 | 1_4:-13478370 | None:intergenic |
| AGCTTCACCCGGACTCTTCT+CGG | 0.405534 | 1_4:-13474753 | None:intergenic |
| GGTAGATGAAAATGGAGAAA+AGG | 0.409058 | 1_4:+13475683 | Msa0151370:CDS |
| AGGCCAACAGCTAGCTTGTA+TGG | 0.413438 | 1_4:+13477952 | Msa0151370:CDS |
| CTTAGAAGCAGAGGTTGAAA+AGG | 0.424596 | 1_4:+13477870 | Msa0151370:CDS |
| GTTAGAATCAGAGATTGTTA+AGG | 0.425792 | 1_4:+13477765 | Msa0151370:CDS |
| TGCTTTCTAACTCTTCCTCC+AGG | 0.429108 | 1_4:-13477618 | None:intergenic |
| GATAGAGTCACTCATCTAGA+TGG | 0.442078 | 1_4:+13476509 | Msa0151370:CDS |
| TTCTAGCCGAATACCACTCT+TGG | 0.444679 | 1_4:-13478617 | None:intergenic |
| CGGATAAGAAGAGATGGTTA+TGG | 0.445207 | 1_4:+13474717 | Msa0151370:CDS |
| GCTTTCCTCATATTTGTTCA+GGG | 0.445685 | 1_4:-13478494 | None:intergenic |
| AGTTCTGAGAAGGGTCGAAT+TGG | 0.445703 | 1_4:+13478571 | Msa0151370:CDS |
| TGAGAAGTATTCTGATGAAC+AGG | 0.447757 | 1_4:+13474805 | Msa0151370:CDS |
| ATGGTTGGAGACAGAGAATA+TGG | 0.450444 | 1_4:+13476733 | Msa0151370:CDS |
| ATTAGAAGCCGACGTTGATA+AGG | 0.452774 | 1_4:+13477660 | Msa0151370:CDS |
| ATTAGAAGCAGAGGTTGATA+AGG | 0.454787 | 1_4:+13477555 | Msa0151370:CDS |
| CGAAATTGCGGCCAAGTGTA+AGG | 0.456297 | 1_4:+13477804 | Msa0151370:CDS |
| AAAAGGGAAGTTAGAGAAGG+TGG | 0.456647 | 1_4:+13477327 | Msa0151370:CDS |
| GAGTTGATTTGGTGTTTGAT+TGG | 0.457653 | 1_4:+13474682 | Msa0151370:five_prime_UTR |
| AGACAGAGAATATGGCTCTC+AGG | 0.458084 | 1_4:+13476741 | Msa0151370:CDS |
| GGTGTTGATGCAATTTCATC+GGG | 0.459416 | 1_4:-13475621 | None:intergenic |
| GGGGAATCAGCTGAAATCTC+TGG | 0.459529 | 1_4:+13478309 | Msa0151370:CDS |
| AATTCGACCCTTCTCAGAAC+TGG | 0.460941 | 1_4:-13478569 | None:intergenic |
| GTATCAAAGGAATCTTCTAA+TGG | 0.462051 | 1_4:+13475513 | Msa0151370:CDS |
| TTAGCTCTTCCGATTGAACT+AGG | 0.463368 | 1_4:-13476772 | None:intergenic |
| AAGATCTAAATGACGGGTCG+AGG | 0.464800 | 1_4:+13475805 | Msa0151370:CDS |
| AAAGTCTTCCGAGAAGAGTC+CGG | 0.465809 | 1_4:+13474745 | Msa0151370:CDS |
| TATTATTAACATACCTGCTA+TGG | 0.467238 | 1_4:-13475916 | None:intergenic |
| ATGATCTAAATGACGGGTCG+AGG | 0.469590 | 1_4:+13475727 | Msa0151370:CDS |
| TCCTTTCAAACTCTTCCGCC+AGG | 0.469800 | 1_4:-13477828 | None:intergenic |
| AAGAAATTGCAATGAAGTGT+AGG | 0.469994 | 1_4:+13477908 | Msa0151370:CDS |
| CGCGAACCAAGAGTGGTATT+CGG | 0.471935 | 1_4:+13478611 | Msa0151370:CDS |
| TATTTGCTTAGGCTGGGAAA+AGG | 0.474120 | 1_4:+13476418 | Msa0151370:intron |
| AAGCAGCTTTGTTGAGGAGT+TGG | 0.475100 | 1_4:+13477225 | Msa0151370:CDS |
| CATTGCAATTTCTTCAGACA+TGG | 0.480327 | 1_4:-13477899 | None:intergenic |
| CTGCTTGCGTTCTTAGTCTC+GGG | 0.481931 | 1_4:-13477208 | None:intergenic |
| TTCTCTTAAAATAGATCTGA+TGG | 0.482089 | 1_4:+13477150 | Msa0151370:CDS |
| GCTGCTTGCGTTCTTAGTCT+CGG | 0.482246 | 1_4:-13477209 | None:intergenic |
| GAAAGCAAATCTGCAATGCT+TGG | 0.492262 | 1_4:+13477634 | Msa0151370:CDS |
| TCTCCATACAAGCTAGCTGT+TGG | 0.492340 | 1_4:-13477955 | None:intergenic |
| GGACGAGATCCTAGTTCAAT+CGG | 0.497284 | 1_4:+13476763 | Msa0151370:CDS |
| AGGTGTTGATGCAATTTCAT+CGG | 0.499092 | 1_4:-13475622 | None:intergenic |
| TTCCGCCAGGTCCTTACACT+TGG | 0.500047 | 1_4:-13477815 | None:intergenic |
| ATTCTTGAATTGATCAAGCT+CGG | 0.500571 | 1_4:-13477095 | None:intergenic |
| AACTTGACATGGTCACTCTC+AGG | 0.504387 | 1_4:+13476471 | Msa0151370:CDS |
| TGACATCATGACTCAGCAAA+TGG | 0.504440 | 1_4:+13477297 | Msa0151370:CDS |
| AGCAAATGGATGAACTAAAA+GGG | 0.505397 | 1_4:+13477311 | Msa0151370:CDS |
| AGCAGAGGTTGATAAGGAAA+GGG | 0.505776 | 1_4:+13477561 | Msa0151370:CDS |
| AAGTCTTCCGAGAAGAGTCC+GGG | 0.509516 | 1_4:+13474746 | Msa0151370:CDS |
| AACCAAGTTGTTCTGACTCG+TGG | 0.509651 | 1_4:+13477056 | Msa0151370:CDS |
| AGTCTGCCTCCATGCTCATT+AGG | 0.510576 | 1_4:-13477504 | None:intergenic |
| TGAACGTGATATGCGTCAAA+AGG | 0.511253 | 1_4:+13476706 | Msa0151370:CDS |
| CCATTTATGATGCATGTAGT+AGG | 0.514775 | 1_4:-13475648 | None:intergenic |
| AACTTGATGGATCAGCTTGT+CGG | 0.521719 | 1_4:-13477129 | None:intergenic |
| GTAGAAGAAGACGATGAAAG+TGG | 0.521926 | 1_4:-13478520 | None:intergenic |
| ATCAGAGATTGTTAAGGAGA+GGG | 0.522890 | 1_4:+13477771 | Msa0151370:CDS |
| AGAAATTGCGAGGAAGTGTA+AGG | 0.525164 | 1_4:+13477594 | Msa0151370:CDS |
| ATGTGGAGGATGCATTCAAA+TGG | 0.526273 | 1_4:+13478409 | Msa0151370:CDS |
| AGGTTGGCTGACGGTAGCTC+CGG | 0.528682 | 1_4:+13478466 | Msa0151370:CDS |
| AAGCAGAGGTTGATAAGGAA+AGG | 0.529296 | 1_4:+13477560 | Msa0151370:CDS |
| TGCATCCCTGAACAAATATG+AGG | 0.529869 | 1_4:+13478489 | Msa0151370:CDS |
| AATGAAGTGTAGGGAATTGG+AGG | 0.530196 | 1_4:+13477918 | Msa0151370:CDS |
| ATGATGCATGTAGTAGGTAA+AGG | 0.532551 | 1_4:-13475642 | None:intergenic |
| TGTCAATGCCAAAGAAGACT+TGG | 0.532566 | 1_4:+13475863 | Msa0151370:CDS |
| TATCCTCAAGATGAATGGTT+CGG | 0.533006 | 1_4:+13477021 | Msa0151370:CDS |
| TTTCCGAACCATTCATCTTG+AGG | 0.535261 | 1_4:-13477024 | None:intergenic |
| GAGCACTTAAGGAGTGCGTT+AGG | 0.537278 | 1_4:+13476531 | Msa0151370:CDS |
| TGCTTCTAATAAGTCGACCT+TGG | 0.538097 | 1_4:-13477542 | None:intergenic |
| GCTATTGTTAATATATCGAA+TGG | 0.539242 | 1_4:+13475774 | Msa0151370:CDS |
| AGACTCCACTTCTTCTAGGT+TGG | 0.540766 | 1_4:+13478450 | Msa0151370:CDS |
| AGAAATTGCAATGAAGTGTA+GGG | 0.545960 | 1_4:+13477909 | Msa0151370:CDS |
| TGTGATATCCTCAAGATGAA+TGG | 0.547937 | 1_4:+13477016 | Msa0151370:CDS |
| CCTGAACTCTCAGCTTCACC+CGG | 0.548091 | 1_4:-13474764 | None:intergenic |
| AAATCACGCCAGTTCTGAGA+AGG | 0.555578 | 1_4:+13478561 | Msa0151370:CDS |
| GCGTCAAAAGGTTGAATGGT+TGG | 0.555698 | 1_4:+13476718 | Msa0151370:CDS |
| GTCAGCCAACCTAGAAGAAG+TGG | 0.556265 | 1_4:-13478455 | None:intergenic |
| AAAGAAGAAGATCTAAATGA+CGG | 0.558459 | 1_4:+13475798 | Msa0151370:CDS |
| AGATAGTCAGTCAGACAGTA+CGG | 0.558626 | 1_4:+13476973 | Msa0151370:CDS |
| TTGAAAGCAGGAAGTATCAA+AGG | 0.558653 | 1_4:+13475500 | Msa0151370:intron |
| CTCTCACACGCTATCTTCCA+AGG | 0.559134 | 1_4:+13477525 | Msa0151370:CDS |
| ATATTTGTTCAGGGATGCAC+CGG | 0.560765 | 1_4:-13478485 | None:intergenic |
| CCAGCAATCATTGCTCATGC+GGG | 0.562517 | 1_4:+13478379 | Msa0151370:CDS |
| GAAATCTCTGGCTACACTTG+AGG | 0.562631 | 1_4:+13478321 | Msa0151370:CDS |
| CCGACACTCGGACTCAAGCT+TGG | 0.562948 | 1_4:-13476879 | None:intergenic |
| GAACGCAAGCAGCTTTGTTG+AGG | 0.566647 | 1_4:+13477219 | Msa0151370:CDS |
| AGCAGAGGTTGAAAAGGAGA+GGG | 0.567149 | 1_4:+13477876 | Msa0151370:CDS |
| GACAGAGAATATGGCTCTCA+GGG | 0.568961 | 1_4:+13476742 | Msa0151370:CDS |
| AAGAAGAAGATCTAAATGAC+GGG | 0.569731 | 1_4:+13475799 | Msa0151370:CDS |
| GTTGCTGAAGAAGCCATAGC+AGG | 0.570953 | 1_4:+13475903 | Msa0151370:CDS |
| GATGAATGGTTCGGAAAACA+GGG | 0.571474 | 1_4:+13477030 | Msa0151370:CDS |
| TGAAATTGCAATAAAATGTG+AGG | 0.573293 | 1_4:+13477699 | Msa0151370:CDS |
| TGCGAGGAAGTGTAAGGACC+TGG | 0.573315 | 1_4:+13477600 | Msa0151370:CDS |
| ATCATCAACATCTTCAGCAC+AGG | 0.574007 | 1_4:-13475574 | None:intergenic |
| AATCAGAGATTGTTAAGGAG+AGG | 0.575395 | 1_4:+13477770 | Msa0151370:CDS |
| AATAAAATGTGAGGGTCTAG+AGG | 0.579023 | 1_4:+13477708 | Msa0151370:CDS |
| AGCAATGATTGCTGGACTTG+CGG | 0.580668 | 1_4:-13478371 | None:intergenic |
| GGTTGACTTCTTAGAAGCAG+AGG | 0.583228 | 1_4:+13477861 | Msa0151370:CDS |
| ACCTGGCGGAAGAGTTTGAA+AGG | 0.585732 | 1_4:+13477827 | Msa0151370:CDS |
| AGAAAATCGCCTAATGAGCA+TGG | 0.586480 | 1_4:+13477495 | Msa0151370:CDS |
| GCAATCATTGCTCATGCGGG+TGG | 0.586991 | 1_4:+13478382 | Msa0151370:CDS |
| AGAATACTTCTCAGAATGAG+AGG | 0.588629 | 1_4:-13474795 | None:intergenic |
| AATTGGAGGAAGAGATACTC+AGG | 0.589915 | 1_4:+13477932 | Msa0151370:CDS |
| GAGAGATTCAACGCAAAATG+AGG | 0.592680 | 1_4:-13476948 | None:intergenic |
| TGTCTTCAACCTCCGACACT+CGG | 0.593276 | 1_4:-13476891 | None:intergenic |
| TGGAGAAAAGAAAATCAAGC+AGG | 0.595873 | 1_4:+13477972 | Msa0151370:CDS |
| ACCAAGTTGTTCTGACTCGT+GGG | 0.598380 | 1_4:+13477057 | Msa0151370:CDS |
| TGCGGCCAAGTGTAAGGACC+TGG | 0.601353 | 1_4:+13477810 | Msa0151370:CDS |
| AAGCAGAGGTTGAAAAGGAG+AGG | 0.601507 | 1_4:+13477875 | Msa0151370:CDS |
| GCAAAATGAGGATGAAGCAA+TGG | 0.602511 | 1_4:-13476936 | None:intergenic |
| AGCTTGAGTCCGAGTGTCGG+AGG | 0.604913 | 1_4:+13476882 | Msa0151370:CDS |
| TCCAGCAATCATTGCTCATG+CGG | 0.605279 | 1_4:+13478378 | Msa0151370:CDS |
| ATATGCGTCAAAAGGTTGAA+TGG | 0.606983 | 1_4:+13476714 | Msa0151370:CDS |
| GAAATTGCAATAAAATGTGA+GGG | 0.607539 | 1_4:+13477700 | Msa0151370:CDS |
| CAATGACGGATAAGAAGAGA+TGG | 0.607557 | 1_4:+13474711 | Msa0151370:exon |
| TGATCTAAATGACGGGTCGA+GGG | 0.608494 | 1_4:+13475728 | Msa0151370:CDS |
| AGATCTAAATGACGGGTCGA+GGG | 0.608494 | 1_4:+13475806 | Msa0151370:CDS |
| GGTCGACTTATTAGAAGCAG+AGG | 0.614728 | 1_4:+13477546 | Msa0151370:CDS |
| GGCTGCGTCAGACGAAATTG+CGG | 0.615682 | 1_4:+13477792 | Msa0151370:CDS |
| TACGGAGAGGCTAACTGCGG+TGG | 0.617100 | 1_4:+13476991 | Msa0151370:CDS |
| GAAAAGTGAAGTGTGTATTG+AGG | 0.618639 | 1_4:+13477384 | Msa0151370:CDS |
| CATAAATGGTGGTTCATCAG+AGG | 0.620066 | 1_4:+13475662 | Msa0151370:CDS |
| AGAACTGGCGTGATTTGGCA+AGG | 0.622883 | 1_4:-13478554 | None:intergenic |
| ACTAAAAGGGAAGTTAGAGA+AGG | 0.626479 | 1_4:+13477324 | Msa0151370:CDS |
| CTTTGTCGCAAGAAATTGCG+AGG | 0.632365 | 1_4:+13477584 | Msa0151370:CDS |
| GTTTGAAAGGAAATGTGCGA+AGG | 0.637081 | 1_4:+13477840 | Msa0151370:CDS |
| AATCACGCCAGTTCTGAGAA+GGG | 0.639029 | 1_4:+13478562 | Msa0151370:CDS |
| CTCATGCGGGTGGAGAGATG+TGG | 0.640653 | 1_4:+13478392 | Msa0151370:CDS |
| GCCCACGAGTCAGAACAACT+TGG | 0.642821 | 1_4:-13477058 | None:intergenic |
| AAGCCGACGTTGATAAGGAG+AGG | 0.644803 | 1_4:+13477665 | Msa0151370:CDS |
| ACTTCTTCTAGGTTGGCTGA+CGG | 0.645634 | 1_4:+13478457 | Msa0151370:CDS |
| GTCACATCTTCAGTTAAAGG+AGG | 0.646496 | 1_4:+13477408 | Msa0151370:CDS |
| GGAGGCAGTTCAGAAATTGG+AGG | 0.651234 | 1_4:+13477426 | Msa0151370:CDS |
| TTTAAAGAAGAAACTTGACA+TGG | 0.658460 | 1_4:+13476460 | Msa0151370:CDS |
| CCAAGCTTGAGTCCGAGTGT+CGG | 0.663975 | 1_4:+13476879 | Msa0151370:CDS |
| ACTACATGCATCATAAATGG+TGG | 0.667278 | 1_4:+13475651 | Msa0151370:CDS |
| ATGCGGGTGGAGAGATGTGG+AGG | 0.668639 | 1_4:+13478395 | Msa0151370:CDS |
| TTGATTGGTAGACACAATGA+CGG | 0.671848 | 1_4:+13474697 | Msa0151370:exon |
| GTTCCTCTCCTTATCAACGT+CGG | 0.677034 | 1_4:-13477668 | None:intergenic |
| GGCCAAGTGTAAGGACCTGG+CGG | 0.702161 | 1_4:+13477813 | Msa0151370:CDS |
| GTCAGTCAGACAGTACGGAG+AGG | 0.705314 | 1_4:+13476978 | Msa0151370:CDS |
| AGAAAACAATAGCATCTTTG+GGG | 0.712210 | 1_4:+13478290 | Msa0151370:intron |
| GAGGAAGTGTAAGGACCTGG+AGG | 0.738472 | 1_4:+13477603 | Msa0151370:CDS |
| AAATCGCCTAATGAGCATGG+AGG | 0.744978 | 1_4:+13477498 | Msa0151370:CDS |
| CAGTACGGAGAGGCTAACTG+CGG | 0.752055 | 1_4:+13476988 | Msa0151370:CDS |
| ATGAATGGTTCGGAAAACAG+GGG | 0.762929 | 1_4:+13477031 | Msa0151370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGAATTATTTTTTTACAT+TGG | + | chr1_4:13476296-13476315 | Msa0151370:intron | 10.0% |
| !! | GAAATTTATTTCATAAAAAT+AGG | + | chr1_4:13478049-13478068 | Msa0151370:intron | 10.0% |
| !! | AATTTCATTTATTTCATGTA+TGG | + | chr1_4:13474890-13474909 | Msa0151370:intron | 15.0% |
| !! | GTATTGCATAATAATATAAT+AGG | + | chr1_4:13475130-13475149 | Msa0151370:intron | 15.0% |
| !! | ATTTCATAAAAATAGGTTAT+TGG | + | chr1_4:13478056-13478075 | Msa0151370:intron | 15.0% |
| !!! | GTTATATTTTGCTTTTATTT+TGG | + | chr1_4:13478122-13478141 | Msa0151370:intron | 15.0% |
| !!! | TTTTTCCTTATATTTGAAAT+CGG | + | chr1_4:13478160-13478179 | Msa0151370:intron | 15.0% |
| !! | TTTATCATTAGAATCAAACT+CGG | + | chr1_4:13475366-13475385 | Msa0151370:intron | 20.0% |
| !! | AATAACATCCAAGATATTAT+AGG | + | chr1_4:13478081-13478100 | Msa0151370:intron | 20.0% |
| !! | ATATCAAACCTATAATATCT+TGG | - | chr1_4:13478092-13478111 | None:intergenic | 20.0% |
| ! | ACAATAGTAACTTAGTAACT+TGG | - | chr1_4:13474942-13474961 | None:intergenic | 25.0% |
| !! | ATCCTTTTGAATATAGTTAC+TGG | + | chr1_4:13475038-13475057 | Msa0151370:intron | 25.0% |
| !! | TCCTTTTGAATATAGTTACT+GGG | + | chr1_4:13475039-13475058 | Msa0151370:intron | 25.0% |
| ! | AAGCATAACTAAGAAAAATG+TGG | - | chr1_4:13475176-13475195 | None:intergenic | 25.0% |
| ! | AGGAAGAAGTTATTACTTAA+CGG | + | chr1_4:13475328-13475347 | Msa0151370:intron | 25.0% |
| ! | GAAAAAGATGATCTAAATGA+CGG | + | chr1_4:13475720-13475739 | Msa0151370:CDS | 25.0% |
| ! | AAAAAGATGATCTAAATGAC+GGG | + | chr1_4:13475721-13475740 | Msa0151370:CDS | 25.0% |
| ! | GCTATTGTTAATATATCGAA+TGG | + | chr1_4:13475774-13475793 | Msa0151370:CDS | 25.0% |
| ! | AAAGAAGAAGATCTAAATGA+CGG | + | chr1_4:13475798-13475817 | Msa0151370:CDS | 25.0% |
| ! | TATTATTAACATACCTGCTA+TGG | - | chr1_4:13475919-13475938 | None:intergenic | 25.0% |
| ! | CTCAATAAGACTACAAAAAA+GGG | - | chr1_4:13476388-13476407 | None:intergenic | 25.0% |
| !!! | GCCTTTTTATTTATTTGCTT+AGG | + | chr1_4:13476407-13476426 | Msa0151370:intron | 25.0% |
| ! | GCCTAAGCAAATAAATAAAA+AGG | - | chr1_4:13476411-13476430 | None:intergenic | 25.0% |
| !!! | TTTTATTTATTTGCTTAGGC+TGG | + | chr1_4:13476411-13476430 | Msa0151370:intron | 25.0% |
| ! | TTTATTTATTTGCTTAGGCT+GGG | + | chr1_4:13476412-13476431 | Msa0151370:intron | 25.0% |
| ! | TTTAAAGAAGAAACTTGACA+TGG | + | chr1_4:13476460-13476479 | Msa0151370:CDS | 25.0% |
| !!! | TCTATTTTAAGAGAACTTGA+TGG | - | chr1_4:13477145-13477164 | None:intergenic | 25.0% |
| ! | TTCTCTTAAAATAGATCTGA+TGG | + | chr1_4:13477150-13477169 | Msa0151370:CDS | 25.0% |
| ! | TGAAATTGCAATAAAATGTG+AGG | + | chr1_4:13477699-13477718 | Msa0151370:CDS | 25.0% |
| ! | GAAATTGCAATAAAATGTGA+GGG | + | chr1_4:13477700-13477719 | Msa0151370:CDS | 25.0% |
| ! | TTTCTATGAAGTATAGTTTG+AGG | - | chr1_4:13478033-13478052 | None:intergenic | 25.0% |
| ! | TAGGTTTGATATCATTAACT+AGG | + | chr1_4:13478100-13478119 | Msa0151370:intron | 25.0% |
| ! | TTCTTCCGATTTCAAATATA+AGG | - | chr1_4:13478168-13478187 | None:intergenic | 25.0% |
| !!! | TCTTTTGTGTTGAGTTGATT+TGG | + | chr1_4:13474671-13474690 | Msa0151370:five_prime_UTR | 30.0% |
| GAAAGATTATCTGTGTTCTT+TGG | + | chr1_4:13474831-13474850 | Msa0151370:intron | 30.0% | |
| CAATTACGATATCATCAGAT+TGG | - | chr1_4:13474970-13474989 | None:intergenic | 30.0% | |
| ACCCAGTAACTATATTCAAA+AGG | - | chr1_4:13475043-13475062 | None:intergenic | 30.0% | |
| TGTCATTAAAACTTGAAAGC+AGG | + | chr1_4:13475488-13475507 | Msa0151370:intron | 30.0% | |
| GTATCAAAGGAATCTTCTAA+TGG | + | chr1_4:13475513-13475532 | Msa0151370:CDS | 30.0% | |
| AAGAAGAAGATCTAAATGAC+GGG | + | chr1_4:13475799-13475818 | Msa0151370:CDS | 30.0% | |
| ATTACCATTCTATCCTTTCT+TGG | + | chr1_4:13476006-13476025 | Msa0151370:intron | 30.0% | |
| ATATCCAAGAAAGGATAGAA+TGG | - | chr1_4:13476013-13476032 | None:intergenic | 30.0% | |
| TATCAACACATATCCAAGAA+AGG | - | chr1_4:13476022-13476041 | None:intergenic | 30.0% | |
| CAAACAATATATCCAGGAAA+TGG | - | chr1_4:13476347-13476366 | None:intergenic | 30.0% | |
| AAAAAAGGGAGAAAAAGAAG+AGG | - | chr1_4:13476374-13476393 | None:intergenic | 30.0% | |
| GCTCAATAAGACTACAAAAA+AGG | - | chr1_4:13476389-13476408 | None:intergenic | 30.0% | |
| ! | TTGAAGCATCTAATTTCTTC+TGG | - | chr1_4:13476670-13476689 | None:intergenic | 30.0% |
| ATCACGTTCAATAGAAGATT+TGG | - | chr1_4:13476696-13476715 | None:intergenic | 30.0% | |
| TAAAAATCAGAACTGTTGAG+AGG | + | chr1_4:13476792-13476811 | Msa0151370:CDS | 30.0% | |
| AAAAATCAGAACTGTTGAGA+GGG | + | chr1_4:13476793-13476812 | Msa0151370:CDS | 30.0% | |
| ATTCTTGAATTGATCAAGCT+CGG | - | chr1_4:13477098-13477117 | None:intergenic | 30.0% | |
| TTCTTTGTCAACGCATTTAT+CGG | - | chr1_4:13477257-13477276 | None:intergenic | 30.0% | |
| AGCAAATGGATGAACTAAAA+GGG | + | chr1_4:13477311-13477330 | Msa0151370:CDS | 30.0% | |
| !! | TATCGTTTGCTTTGATTTGT+AGG | - | chr1_4:13477476-13477495 | None:intergenic | 30.0% |
| GTTAGAATCAGAGATTGTTA+AGG | + | chr1_4:13477765-13477784 | Msa0151370:CDS | 30.0% | |
| AAGAAATTGCAATGAAGTGT+AGG | + | chr1_4:13477908-13477927 | Msa0151370:CDS | 30.0% | |
| AGAAATTGCAATGAAGTGTA+GGG | + | chr1_4:13477909-13477928 | Msa0151370:CDS | 30.0% | |
| ! | CATTTGATCTTTTCTATGTC+AGG | + | chr1_4:13478227-13478246 | Msa0151370:intron | 30.0% |
| CAGAAAACAATAGCATCTTT+GGG | + | chr1_4:13478289-13478308 | Msa0151370:intron | 30.0% | |
| AGAAAACAATAGCATCTTTG+GGG | + | chr1_4:13478290-13478309 | Msa0151370:intron | 30.0% | |
| !! | GAGTTGATTTGGTGTTTGAT+TGG | + | chr1_4:13474682-13474701 | Msa0151370:five_prime_UTR | 35.0% |
| TTGATTGGTAGACACAATGA+CGG | + | chr1_4:13474697-13474716 | Msa0151370:exon | 35.0% | |
| AGAATACTTCTCAGAATGAG+AGG | - | chr1_4:13474798-13474817 | None:intergenic | 35.0% | |
| !! | TGAGAAGTATTCTGATGAAC+AGG | + | chr1_4:13474805-13474824 | Msa0151370:CDS | 35.0% |
| TTTCATGTATGGAAAACACG+AGG | + | chr1_4:13474901-13474920 | Msa0151370:intron | 35.0% | |
| CTAGGAAAGATAACTAACTG+TGG | - | chr1_4:13475300-13475319 | None:intergenic | 35.0% | |
| ! | TATCTTTCCTAGACTTGTTC+AGG | + | chr1_4:13475308-13475327 | Msa0151370:intron | 35.0% |
| !! | AACACAAGTTTTAGTGCACA+AGG | - | chr1_4:13475419-13475438 | None:intergenic | 35.0% |
| !! | TTGAAAGCAGGAAGTATCAA+AGG | + | chr1_4:13475500-13475519 | Msa0151370:intron | 35.0% |
| !! | AGGTGTTGATGCAATTTCAT+CGG | - | chr1_4:13475625-13475644 | None:intergenic | 35.0% |
| ATGATGCATGTAGTAGGTAA+AGG | - | chr1_4:13475645-13475664 | None:intergenic | 35.0% | |
| CCATTTATGATGCATGTAGT+AGG | - | chr1_4:13475651-13475670 | None:intergenic | 35.0% | |
| CCTACTACATGCATCATAAA+TGG | + | chr1_4:13475648-13475667 | Msa0151370:CDS | 35.0% | |
| ACTACATGCATCATAAATGG+TGG | + | chr1_4:13475651-13475670 | Msa0151370:CDS | 35.0% | |
| TCATCAGAGGTAGATGAAAA+TGG | + | chr1_4:13475675-13475694 | Msa0151370:CDS | 35.0% | |
| GGTAGATGAAAATGGAGAAA+AGG | + | chr1_4:13475683-13475702 | Msa0151370:CDS | 35.0% | |
| CTGTTTAACCAAGTCTTCTT+TGG | - | chr1_4:13475874-13475893 | None:intergenic | 35.0% | |
| ! | GGATATGTGTTGATATTGTG+CGG | + | chr1_4:13476027-13476046 | Msa0151370:intron | 35.0% |
| !!! | TTTGGATTTTTTGCAGTCAC+TGG | - | chr1_4:13476144-13476163 | None:intergenic | 35.0% |
| ATGAGGAGAAACTTAGGATT+TGG | - | chr1_4:13476162-13476181 | None:intergenic | 35.0% | |
| CCATTTATGAGGAGAAACTT+AGG | - | chr1_4:13476168-13476187 | None:intergenic | 35.0% | |
| CCTAAGTTTCTCCTCATAAA+TGG | + | chr1_4:13476165-13476184 | Msa0151370:intron | 35.0% | |
| TTCTCCTCATAAATGGAGTT+AGG | + | chr1_4:13476172-13476191 | Msa0151370:intron | 35.0% | |
| CTAACCTAACTCCATTTATG+AGG | - | chr1_4:13476179-13476198 | None:intergenic | 35.0% | |
| CTCATAAATGGAGTTAGGTT+AGG | + | chr1_4:13476177-13476196 | Msa0151370:intron | 35.0% | |
| AGTTAGGTTAGGACTTAGAT+AGG | + | chr1_4:13476188-13476207 | Msa0151370:intron | 35.0% | |
| GTTAGGTTAGGACTTAGATA+GGG | + | chr1_4:13476189-13476208 | Msa0151370:intron | 35.0% | |
| GTTTGTATGATTCCATTTCC+TGG | + | chr1_4:13476332-13476351 | Msa0151370:intron | 35.0% | |
| ATATGCGTCAAAAGGTTGAA+TGG | + | chr1_4:13476714-13476733 | Msa0151370:CDS | 35.0% | |
| TGTGATATCCTCAAGATGAA+TGG | + | chr1_4:13477016-13477035 | Msa0151370:CDS | 35.0% | |
| TATCCTCAAGATGAATGGTT+CGG | + | chr1_4:13477021-13477040 | Msa0151370:CDS | 35.0% | |
| ! | GATGGACGATTTTCTTGAAA+TGG | + | chr1_4:13477168-13477187 | Msa0151370:CDS | 35.0% |
| CAGCAAATGGATGAACTAAA+AGG | + | chr1_4:13477310-13477329 | Msa0151370:CDS | 35.0% | |
| ACTAAAAGGGAAGTTAGAGA+AGG | + | chr1_4:13477324-13477343 | Msa0151370:CDS | 35.0% | |
| GAAAAGTGAAGTGTGTATTG+AGG | + | chr1_4:13477384-13477403 | Msa0151370:CDS | 35.0% | |
| !! | ATTAGAAGCAGAGGTTGATA+AGG | + | chr1_4:13477555-13477574 | Msa0151370:CDS | 35.0% |
| AATAAAATGTGAGGGTCTAG+AGG | + | chr1_4:13477708-13477727 | Msa0151370:CDS | 35.0% | |
| AATCAGAGATTGTTAAGGAG+AGG | + | chr1_4:13477770-13477789 | Msa0151370:CDS | 35.0% | |
| ATCAGAGATTGTTAAGGAGA+GGG | + | chr1_4:13477771-13477790 | Msa0151370:CDS | 35.0% | |
| CATTGCAATTTCTTCAGACA+TGG | - | chr1_4:13477902-13477921 | None:intergenic | 35.0% | |
| TGGAGAAAAGAAAATCAAGC+AGG | + | chr1_4:13477972-13477991 | Msa0151370:CDS | 35.0% | |
| GAAAAGAAAATCAAGCAGGT+TGG | + | chr1_4:13477976-13477995 | Msa0151370:intron | 35.0% | |
| ! | TTGATCTTTTCTATGTCAGG+AGG | + | chr1_4:13478230-13478249 | Msa0151370:intron | 35.0% |
| !! | TGCTATTGTTTTCTGGCATT+CGG | - | chr1_4:13478284-13478303 | None:intergenic | 35.0% |
| ! | CCAAAGATGCTATTGTTTTC+TGG | - | chr1_4:13478291-13478310 | None:intergenic | 35.0% |
| CCAGAAAACAATAGCATCTT+TGG | + | chr1_4:13478288-13478307 | Msa0151370:intron | 35.0% | |
| GCTTTCCTCATATTTGTTCA+GGG | - | chr1_4:13478497-13478516 | None:intergenic | 35.0% | |
| AGCTTTCCTCATATTTGTTC+AGG | - | chr1_4:13478498-13478517 | None:intergenic | 35.0% | |
| !! | CAATGACGGATAAGAAGAGA+TGG | + | chr1_4:13474711-13474730 | Msa0151370:exon | 40.0% |
| CGGATAAGAAGAGATGGTTA+TGG | + | chr1_4:13474717-13474736 | Msa0151370:CDS | 40.0% | |
| TCAGAAAAGACCGAAAGAGT+TGG | + | chr1_4:13475239-13475258 | Msa0151370:intron | 40.0% | |
| CGATTCAAGACCAACTCTTT+CGG | - | chr1_4:13475252-13475271 | None:intergenic | 40.0% | |
| !! | CGAAAGAGTTGGTCTTGAAT+CGG | + | chr1_4:13475250-13475269 | Msa0151370:intron | 40.0% |
| ACTTCTTCCTGAACAAGTCT+AGG | - | chr1_4:13475318-13475337 | None:intergenic | 40.0% | |
| TAGAATCAAACTCGGCAATC+CGG | + | chr1_4:13475374-13475393 | Msa0151370:intron | 40.0% | |
| ! | TGTGTGAGTATTGTAAACCC+CGG | - | chr1_4:13475396-13475415 | None:intergenic | 40.0% |
| AGAAAAAAGCTGAGTGTGCA+GGG | - | chr1_4:13475445-13475464 | None:intergenic | 40.0% | |
| AAGAAAAAAGCTGAGTGTGC+AGG | - | chr1_4:13475446-13475465 | None:intergenic | 40.0% | |
| !!! | TACAGCTTTTGAGGTGACAT+CGG | - | chr1_4:13475553-13475572 | None:intergenic | 40.0% |
| ATCATCAACATCTTCAGCAC+AGG | - | chr1_4:13475577-13475596 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGCAATTTCATC+GGG | - | chr1_4:13475624-13475643 | None:intergenic | 40.0% |
| CATAAATGGTGGTTCATCAG+AGG | + | chr1_4:13475662-13475681 | Msa0151370:CDS | 40.0% | |
| TGTCAATGCCAAAGAAGACT+TGG | + | chr1_4:13475863-13475882 | Msa0151370:CDS | 40.0% | |
| GTGCGTGTCTACGAATTATT+CGG | + | chr1_4:13476049-13476068 | Msa0151370:intron | 40.0% | |
| GGATGGCAAACAATATATCC+AGG | - | chr1_4:13476353-13476372 | None:intergenic | 40.0% | |
| AAGGGAGAAAAAGAAGAGGA+TGG | - | chr1_4:13476370-13476389 | None:intergenic | 40.0% | |
| TATTTGCTTAGGCTGGGAAA+AGG | + | chr1_4:13476418-13476437 | Msa0151370:intron | 40.0% | |
| GATAGAGTCACTCATCTAGA+TGG | + | chr1_4:13476509-13476528 | Msa0151370:CDS | 40.0% | |
| ! | TCATCTAGATGGAGCACTTA+AGG | + | chr1_4:13476520-13476539 | Msa0151370:CDS | 40.0% |
| ! | TTCCAATTCGCGAGTCTTTT+CGG | - | chr1_4:13476609-13476628 | None:intergenic | 40.0% |
| TGAACGTGATATGCGTCAAA+AGG | + | chr1_4:13476706-13476725 | Msa0151370:CDS | 40.0% | |
| ATGGTTGGAGACAGAGAATA+TGG | + | chr1_4:13476733-13476752 | Msa0151370:CDS | 40.0% | |
| ! | TTAGCTCTTCCGATTGAACT+AGG | - | chr1_4:13476775-13476794 | None:intergenic | 40.0% |
| GCAAAATGAGGATGAAGCAA+TGG | - | chr1_4:13476939-13476958 | None:intergenic | 40.0% | |
| GAGAGATTCAACGCAAAATG+AGG | - | chr1_4:13476951-13476970 | None:intergenic | 40.0% | |
| AGATAGTCAGTCAGACAGTA+CGG | + | chr1_4:13476973-13476992 | Msa0151370:CDS | 40.0% | |
| TTTCCGAACCATTCATCTTG+AGG | - | chr1_4:13477027-13477046 | None:intergenic | 40.0% | |
| ! | AGATGAATGGTTCGGAAAAC+AGG | + | chr1_4:13477029-13477048 | Msa0151370:CDS | 40.0% |
| ! | GATGAATGGTTCGGAAAACA+GGG | + | chr1_4:13477030-13477049 | Msa0151370:CDS | 40.0% |
| ! | ATGAATGGTTCGGAAAACAG+GGG | + | chr1_4:13477031-13477050 | Msa0151370:CDS | 40.0% |
| ! | AACTTGATGGATCAGCTTGT+CGG | - | chr1_4:13477132-13477151 | None:intergenic | 40.0% |
| TGACATCATGACTCAGCAAA+TGG | + | chr1_4:13477297-13477316 | Msa0151370:CDS | 40.0% | |
| AAAAGGGAAGTTAGAGAAGG+TGG | + | chr1_4:13477327-13477346 | Msa0151370:CDS | 40.0% | |
| GGAGTCACATCTTCAGTTAA+AGG | + | chr1_4:13477405-13477424 | Msa0151370:CDS | 40.0% | |
| GTCACATCTTCAGTTAAAGG+AGG | + | chr1_4:13477408-13477427 | Msa0151370:CDS | 40.0% | |
| AAAGGAGGCAGTTCAGAAAT+TGG | + | chr1_4:13477423-13477442 | Msa0151370:CDS | 40.0% | |
| AGAAAATCGCCTAATGAGCA+TGG | + | chr1_4:13477495-13477514 | Msa0151370:CDS | 40.0% | |
| TGCTTCTAATAAGTCGACCT+TGG | - | chr1_4:13477545-13477564 | None:intergenic | 40.0% | |
| !! | AAGCAGAGGTTGATAAGGAA+AGG | + | chr1_4:13477560-13477579 | Msa0151370:CDS | 40.0% |
| !! | AGCAGAGGTTGATAAGGAAA+GGG | + | chr1_4:13477561-13477580 | Msa0151370:CDS | 40.0% |
| ! | AGAAATTGCGAGGAAGTGTA+AGG | + | chr1_4:13477594-13477613 | Msa0151370:CDS | 40.0% |
| GAAAGCAAATCTGCAATGCT+TGG | + | chr1_4:13477634-13477653 | Msa0151370:CDS | 40.0% | |
| ATTAGAAGCCGACGTTGATA+AGG | + | chr1_4:13477660-13477679 | Msa0151370:CDS | 40.0% | |
| GTTTGAAAGGAAATGTGCGA+AGG | + | chr1_4:13477840-13477859 | Msa0151370:CDS | 40.0% | |
| CTTAGAAGCAGAGGTTGAAA+AGG | + | chr1_4:13477870-13477889 | Msa0151370:CDS | 40.0% | |
| TGCAATGAAGTGTAGGGAAT+TGG | + | chr1_4:13477915-13477934 | Msa0151370:CDS | 40.0% | |
| AATGAAGTGTAGGGAATTGG+AGG | + | chr1_4:13477918-13477937 | Msa0151370:CDS | 40.0% | |
| AATTGGAGGAAGAGATACTC+AGG | + | chr1_4:13477932-13477951 | Msa0151370:CDS | 40.0% | |
| GAATGCTAGCAGTGTCAATA+AGG | - | chr1_4:13478351-13478370 | None:intergenic | 40.0% | |
| ATGTGGAGGATGCATTCAAA+TGG | + | chr1_4:13478409-13478428 | Msa0151370:CDS | 40.0% | |
| ATATTTGTTCAGGGATGCAC+CGG | - | chr1_4:13478488-13478507 | None:intergenic | 40.0% | |
| TGCATCCCTGAACAAATATG+AGG | + | chr1_4:13478489-13478508 | Msa0151370:CDS | 40.0% | |
| GTAGAAGAAGACGATGAAAG+TGG | - | chr1_4:13478523-13478542 | None:intergenic | 40.0% | |
| AAAGTCTTCCGAGAAGAGTC+CGG | + | chr1_4:13474745-13474764 | Msa0151370:CDS | 45.0% | |
| GGAAGGTGAATTCAGTAGCA+GGG | - | chr1_4:13475077-13475096 | None:intergenic | 45.0% | |
| AGGAAGGTGAATTCAGTAGC+AGG | - | chr1_4:13475078-13475097 | None:intergenic | 45.0% | |
| GAATCTGGTACATTGTCTGC+AGG | - | chr1_4:13475098-13475117 | None:intergenic | 45.0% | |
| !! | TACTCGCTTTTGCGTGAATC+TGG | - | chr1_4:13475113-13475132 | None:intergenic | 45.0% |
| AGAATCAAACTCGGCAATCC+GGG | + | chr1_4:13475375-13475394 | Msa0151370:intron | 45.0% | |
| !!! | ACAGCTTTTGAGGTGACATC+GGG | - | chr1_4:13475552-13475571 | None:intergenic | 45.0% |
| !! | ATGATCTAAATGACGGGTCG+AGG | + | chr1_4:13475727-13475746 | Msa0151370:CDS | 45.0% |
| !! | TGATCTAAATGACGGGTCGA+GGG | + | chr1_4:13475728-13475747 | Msa0151370:CDS | 45.0% |
| !! | AAGATCTAAATGACGGGTCG+AGG | + | chr1_4:13475805-13475824 | Msa0151370:CDS | 45.0% |
| !! | AGATCTAAATGACGGGTCGA+GGG | + | chr1_4:13475806-13475825 | Msa0151370:CDS | 45.0% |
| TGCTTGCTTTCTGTAACGTC+TGG | + | chr1_4:13476094-13476113 | Msa0151370:intron | 45.0% | |
| ! | TTTTTGCAGTCACTGGTGAG+TGG | - | chr1_4:13476137-13476156 | None:intergenic | 45.0% |
| AACTTGACATGGTCACTCTC+AGG | + | chr1_4:13476471-13476490 | Msa0151370:CDS | 45.0% | |
| GCGTCAAAAGGTTGAATGGT+TGG | + | chr1_4:13476718-13476737 | Msa0151370:CDS | 45.0% | |
| AGACAGAGAATATGGCTCTC+AGG | + | chr1_4:13476741-13476760 | Msa0151370:CDS | 45.0% | |
| GACAGAGAATATGGCTCTCA+GGG | + | chr1_4:13476742-13476761 | Msa0151370:CDS | 45.0% | |
| GGACGAGATCCTAGTTCAAT+CGG | + | chr1_4:13476763-13476782 | Msa0151370:CDS | 45.0% | |
| ! | AACCAAGTTGTTCTGACTCG+TGG | + | chr1_4:13477056-13477075 | Msa0151370:CDS | 45.0% |
| ! | ACCAAGTTGTTCTGACTCGT+GGG | + | chr1_4:13477057-13477076 | Msa0151370:CDS | 45.0% |
| !! | AAGCAGCTTTGTTGAGGAGT+TGG | + | chr1_4:13477225-13477244 | Msa0151370:CDS | 45.0% |
| AAATCGCCTAATGAGCATGG+AGG | + | chr1_4:13477498-13477517 | Msa0151370:CDS | 45.0% | |
| ! | GGTCGACTTATTAGAAGCAG+AGG | + | chr1_4:13477546-13477565 | Msa0151370:CDS | 45.0% |
| CTTTGTCGCAAGAAATTGCG+AGG | + | chr1_4:13477584-13477603 | Msa0151370:CDS | 45.0% | |
| TGCTTTCTAACTCTTCCTCC+AGG | - | chr1_4:13477621-13477640 | None:intergenic | 45.0% | |
| GTTCCTCTCCTTATCAACGT+CGG | - | chr1_4:13477671-13477690 | None:intergenic | 45.0% | |
| ! | GGTTGACTTCTTAGAAGCAG+AGG | + | chr1_4:13477861-13477880 | Msa0151370:CDS | 45.0% |
| AAGCAGAGGTTGAAAAGGAG+AGG | + | chr1_4:13477875-13477894 | Msa0151370:CDS | 45.0% | |
| AGCAGAGGTTGAAAAGGAGA+GGG | + | chr1_4:13477876-13477895 | Msa0151370:CDS | 45.0% | |
| TCTCCATACAAGCTAGCTGT+TGG | - | chr1_4:13477958-13477977 | None:intergenic | 45.0% | |
| GAAATCTCTGGCTACACTTG+AGG | + | chr1_4:13478321-13478340 | Msa0151370:CDS | 45.0% | |
| AGCAATGATTGCTGGACTTG+CGG | - | chr1_4:13478374-13478393 | None:intergenic | 45.0% | |
| TCCAGCAATCATTGCTCATG+CGG | + | chr1_4:13478378-13478397 | Msa0151370:CDS | 45.0% | |
| GAAGAAGTGGAGTCTCTCTT+AGG | - | chr1_4:13478445-13478464 | None:intergenic | 45.0% | |
| AGAGAGACTCCACTTCTTCT+AGG | + | chr1_4:13478446-13478465 | Msa0151370:CDS | 45.0% | |
| AGACTCCACTTCTTCTAGGT+TGG | + | chr1_4:13478450-13478469 | Msa0151370:CDS | 45.0% | |
| ! | ACTTCTTCTAGGTTGGCTGA+CGG | + | chr1_4:13478457-13478476 | Msa0151370:CDS | 45.0% |
| TTCTCAGAACTGGCGTGATT+TGG | - | chr1_4:13478562-13478581 | None:intergenic | 45.0% | |
| !! | AAATCACGCCAGTTCTGAGA+AGG | + | chr1_4:13478561-13478580 | Msa0151370:CDS | 45.0% |
| !! | AATCACGCCAGTTCTGAGAA+GGG | + | chr1_4:13478562-13478581 | Msa0151370:CDS | 45.0% |
| AATTCGACCCTTCTCAGAAC+TGG | - | chr1_4:13478572-13478591 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGAAGGGTCGAAT+TGG | + | chr1_4:13478571-13478590 | Msa0151370:CDS | 45.0% |
| ! | TTTTTCTCGCGAACCAAGAG+TGG | + | chr1_4:13478604-13478623 | Msa0151370:CDS | 45.0% |
| TTCTAGCCGAATACCACTCT+TGG | - | chr1_4:13478620-13478639 | None:intergenic | 45.0% | |
| AAGTCTTCCGAGAAGAGTCC+GGG | + | chr1_4:13474746-13474765 | Msa0151370:CDS | 50.0% | |
| CTGGTACATTGTCTGCAGGA+AGG | - | chr1_4:13475094-13475113 | None:intergenic | 50.0% | |
| GAATCAAACTCGGCAATCCG+GGG | + | chr1_4:13475376-13475395 | Msa0151370:intron | 50.0% | |
| ! | AGCACAGGCTACAGCTTTTG+AGG | - | chr1_4:13475562-13475581 | None:intergenic | 50.0% |
| GTTGCTGAAGAAGCCATAGC+AGG | + | chr1_4:13475903-13475922 | Msa0151370:CDS | 50.0% | |
| ! | GAGCACTTAAGGAGTGCGTT+AGG | + | chr1_4:13476531-13476550 | Msa0151370:CDS | 50.0% |
| AGCCGAAAAGACTCGCGAAT+TGG | + | chr1_4:13476604-13476623 | Msa0151370:CDS | 50.0% | |
| ACTAGCTGTCTCAGCTGCTT+GGG | - | chr1_4:13476828-13476847 | None:intergenic | 50.0% | |
| TACTAGCTGTCTCAGCTGCT+TGG | - | chr1_4:13476829-13476848 | None:intergenic | 50.0% | |
| TGTCTTCAACCTCCGACACT+CGG | - | chr1_4:13476894-13476913 | None:intergenic | 50.0% | |
| CTGCTTGCGTTCTTAGTCTC+GGG | - | chr1_4:13477211-13477230 | None:intergenic | 50.0% | |
| GCTGCTTGCGTTCTTAGTCT+CGG | - | chr1_4:13477212-13477231 | None:intergenic | 50.0% | |
| !! | GAACGCAAGCAGCTTTGTTG+AGG | + | chr1_4:13477219-13477238 | Msa0151370:CDS | 50.0% |
| GGAGGCAGTTCAGAAATTGG+AGG | + | chr1_4:13477426-13477445 | Msa0151370:CDS | 50.0% | |
| AGTCTGCCTCCATGCTCATT+AGG | - | chr1_4:13477507-13477526 | None:intergenic | 50.0% | |
| CTCTCACACGCTATCTTCCA+AGG | + | chr1_4:13477525-13477544 | Msa0151370:CDS | 50.0% | |
| ! | AAGCCGACGTTGATAAGGAG+AGG | + | chr1_4:13477665-13477684 | Msa0151370:CDS | 50.0% |
| CGAAATTGCGGCCAAGTGTA+AGG | + | chr1_4:13477804-13477823 | Msa0151370:CDS | 50.0% | |
| ACCTGGCGGAAGAGTTTGAA+AGG | + | chr1_4:13477827-13477846 | Msa0151370:CDS | 50.0% | |
| TCCTTTCAAACTCTTCCGCC+AGG | - | chr1_4:13477831-13477850 | None:intergenic | 50.0% | |
| ! | AGGCCAACAGCTAGCTTGTA+TGG | + | chr1_4:13477952-13477971 | Msa0151370:CDS | 50.0% |
| GGGGAATCAGCTGAAATCTC+TGG | + | chr1_4:13478309-13478328 | Msa0151370:CDS | 50.0% | |
| GCAATGATTGCTGGACTTGC+GGG | - | chr1_4:13478373-13478392 | None:intergenic | 50.0% | |
| CCAGCAATCATTGCTCATGC+GGG | + | chr1_4:13478379-13478398 | Msa0151370:CDS | 50.0% | |
| GTCAGCCAACCTAGAAGAAG+TGG | - | chr1_4:13478458-13478477 | None:intergenic | 50.0% | |
| ! | AGAACTGGCGTGATTTGGCA+AGG | - | chr1_4:13478557-13478576 | None:intergenic | 50.0% |
| CGCGAACCAAGAGTGGTATT+CGG | + | chr1_4:13478611-13478630 | Msa0151370:CDS | 50.0% | |
| AGCTTCACCCGGACTCTTCT+CGG | - | chr1_4:13474756-13474775 | None:intergenic | 55.0% | |
| CCTGAACTCTCAGCTTCACC+CGG | - | chr1_4:13474767-13474786 | None:intergenic | 55.0% | |
| CCAAGCTTGAGTCCGAGTGT+CGG | + | chr1_4:13476879-13476898 | Msa0151370:CDS | 55.0% | |
| GTCAGTCAGACAGTACGGAG+AGG | + | chr1_4:13476978-13476997 | Msa0151370:CDS | 55.0% | |
| CAGTACGGAGAGGCTAACTG+CGG | + | chr1_4:13476988-13477007 | Msa0151370:CDS | 55.0% | |
| GCCCACGAGTCAGAACAACT+TGG | - | chr1_4:13477061-13477080 | None:intergenic | 55.0% | |
| ! | TGCGAGGAAGTGTAAGGACC+TGG | + | chr1_4:13477600-13477619 | Msa0151370:CDS | 55.0% |
| ! | GAGGAAGTGTAAGGACCTGG+AGG | + | chr1_4:13477603-13477622 | Msa0151370:CDS | 55.0% |
| GGCTGCGTCAGACGAAATTG+CGG | + | chr1_4:13477792-13477811 | Msa0151370:CDS | 55.0% | |
| TTCCGCCAGGTCCTTACACT+TGG | - | chr1_4:13477818-13477837 | None:intergenic | 55.0% | |
| TGGCATTCGGCAAGCTTTCC+CGG | - | chr1_4:13478271-13478290 | None:intergenic | 55.0% | |
| CCCGCATGAGCAATGATTGC+TGG | - | chr1_4:13478382-13478401 | None:intergenic | 55.0% | |
| GCAATCATTGCTCATGCGGG+TGG | + | chr1_4:13478382-13478401 | Msa0151370:CDS | 55.0% | |
| CCGGGTGAAGCTGAGAGTTC+AGG | + | chr1_4:13474764-13474783 | Msa0151370:CDS | 60.0% | |
| CCGACACTCGGACTCAAGCT+TGG | - | chr1_4:13476882-13476901 | None:intergenic | 60.0% | |
| !! | AGCTTGAGTCCGAGTGTCGG+AGG | + | chr1_4:13476882-13476901 | Msa0151370:CDS | 60.0% |
| TACGGAGAGGCTAACTGCGG+TGG | + | chr1_4:13476991-13477010 | Msa0151370:CDS | 60.0% | |
| TGCGGCCAAGTGTAAGGACC+TGG | + | chr1_4:13477810-13477829 | Msa0151370:CDS | 60.0% | |
| GGCCAAGTGTAAGGACCTGG+CGG | + | chr1_4:13477813-13477832 | Msa0151370:CDS | 60.0% | |
| CTCATGCGGGTGGAGAGATG+TGG | + | chr1_4:13478392-13478411 | Msa0151370:CDS | 60.0% | |
| ATGCGGGTGGAGAGATGTGG+AGG | + | chr1_4:13478395-13478414 | Msa0151370:CDS | 60.0% | |
| ! | AGGTTGGCTGACGGTAGCTC+CGG | + | chr1_4:13478466-13478485 | Msa0151370:CDS | 60.0% |
| GAGGACCTAGCACTCGCTGC+CGG | + | chr1_4:13478249-13478268 | Msa0151370:intron | 65.0% | |
| AGGACCTAGCACTCGCTGCC+GGG | + | chr1_4:13478250-13478269 | Msa0151370:intron | 65.0% | |
| CTTTCCCGGCAGCGAGTGCT+AGG | - | chr1_4:13478257-13478276 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 13474661 | 13478645 | 13474661 | ID=Msa0151370;Name=Msa0151370 |
| chr1_4 | mRNA | 13474661 | 13478645 | 13474661 | ID=Msa0151370-mRNA-1;Parent=Msa0151370;Name=Msa0151370-mRNA-1;_AED=0.03;_eAED=0.03;_QI=52|0.66|0.5|1|1|1|4|0|815 |
| chr1_4 | exon | 13474661 | 13474826 | 13474661 | ID=Msa0151370-mRNA-1:exon:5343;Parent=Msa0151370-mRNA-1 |
| chr1_4 | exon | 13475510 | 13475924 | 13475510 | ID=Msa0151370-mRNA-1:exon:5344;Parent=Msa0151370-mRNA-1 |
| chr1_4 | exon | 13476429 | 13477993 | 13476429 | ID=Msa0151370-mRNA-1:exon:5345;Parent=Msa0151370-mRNA-1 |
| chr1_4 | exon | 13478292 | 13478645 | 13478292 | ID=Msa0151370-mRNA-1:exon:5346;Parent=Msa0151370-mRNA-1 |
| chr1_4 | five_prime_UTR | 13474661 | 13474712 | 13474661 | ID=Msa0151370-mRNA-1:five_prime_utr;Parent=Msa0151370-mRNA-1 |
| chr1_4 | CDS | 13474713 | 13474826 | 13474713 | ID=Msa0151370-mRNA-1:cds;Parent=Msa0151370-mRNA-1 |
| chr1_4 | CDS | 13475510 | 13475924 | 13475510 | ID=Msa0151370-mRNA-1:cds;Parent=Msa0151370-mRNA-1 |
| chr1_4 | CDS | 13476429 | 13477993 | 13476429 | ID=Msa0151370-mRNA-1:cds;Parent=Msa0151370-mRNA-1 |
| chr1_4 | CDS | 13478292 | 13478645 | 13478292 | ID=Msa0151370-mRNA-1:cds;Parent=Msa0151370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
