Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011430 | sp|Q8LLE5|FPP_SOLLC | 54.148 | 458 | 196 | 5 | 185 | 634 | 1 | 452 | 8.67e-135 | 417 |
| Msa0011430 | sp|Q8LLE5|FPP_SOLLC | 40.800 | 250 | 102 | 4 | 644 | 850 | 327 | 573 | 4.23e-35 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011400 | Msa0011430 | 0.834645 | 2.659495e-56 | -8.615850e-47 |
| Msa0011430 | Msa0011460 | 0.951356 | 2.427553e-109 | -8.615850e-47 |
| Msa0011430 | Msa0151370 | 0.832468 | 9.293864e-56 | -8.615850e-47 |
| Msa0011430 | Msa0685460 | 0.806716 | 7.185728e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011430 | MtrunA17_Chr1g0159951 | 93.443 | 854 | 32 | 1 | 1 | 854 | 1 | 830 | 0.0 | 1520 |
| Msa0011430 | MtrunA17_Chr3g0130811 | 40.533 | 713 | 348 | 14 | 150 | 814 | 39 | 723 | 2.59e-126 | 396 |
| Msa0011430 | MtrunA17_Chr8g0384881 | 47.149 | 456 | 201 | 5 | 169 | 603 | 73 | 509 | 1.35e-109 | 350 |
| Msa0011430 | MtrunA17_Chr8g0384881 | 36.620 | 213 | 75 | 6 | 662 | 851 | 463 | 638 | 8.65e-21 | 97.8 |
| Msa0011430 | MtrunA17_Chr3g0142411 | 42.489 | 233 | 109 | 2 | 160 | 367 | 86 | 318 | 2.32e-43 | 170 |
| Msa0011430 | MtrunA17_Chr1g0156371 | 41.434 | 251 | 119 | 3 | 160 | 382 | 67 | 317 | 2.98e-41 | 164 |
| Msa0011430 | MtrunA17_Chr5g0405291 | 36.087 | 230 | 122 | 2 | 163 | 367 | 70 | 299 | 2.33e-33 | 138 |
| Msa0011430 | MtrunA17_Chr4g0053121 | 37.220 | 223 | 115 | 3 | 162 | 359 | 33 | 255 | 4.19e-28 | 122 |
| Msa0011430 | MtrunA17_Chr5g0401911 | 31.988 | 322 | 156 | 7 | 171 | 461 | 50 | 339 | 1.21e-26 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011430 | AT1G21810.3 | 38.174 | 723 | 291 | 17 | 182 | 854 | 13 | 629 | 8.98e-108 | 345 |
| Msa0011430 | AT1G21810.1 | 38.174 | 723 | 291 | 17 | 182 | 854 | 13 | 629 | 8.98e-108 | 345 |
| Msa0011430 | AT3G05270.3 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 6.60e-91 | 300 |
| Msa0011430 | AT3G05270.3 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.60e-13 | 72.8 |
| Msa0011430 | AT3G05270.2 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 6.60e-91 | 300 |
| Msa0011430 | AT3G05270.2 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.60e-13 | 72.8 |
| Msa0011430 | AT3G05270.1 | 38.308 | 650 | 323 | 12 | 130 | 760 | 25 | 615 | 6.60e-91 | 300 |
| Msa0011430 | AT3G05270.1 | 48.649 | 74 | 28 | 2 | 3 | 75 | 2 | 66 | 6.60e-13 | 72.8 |
| Msa0011430 | AT1G77580.1 | 48.688 | 343 | 124 | 6 | 162 | 498 | 22 | 318 | 1.01e-81 | 276 |
| Msa0011430 | AT1G77580.4 | 48.980 | 343 | 123 | 7 | 162 | 498 | 22 | 318 | 1.03e-80 | 276 |
| Msa0011430 | AT1G77580.2 | 48.980 | 343 | 123 | 7 | 162 | 498 | 56 | 352 | 1.30e-80 | 276 |
| Msa0011430 | AT1G77580.3 | 48.980 | 343 | 123 | 7 | 162 | 498 | 56 | 352 | 1.30e-80 | 276 |
| Msa0011430 | AT1G21810.2 | 34.958 | 595 | 248 | 16 | 310 | 854 | 1 | 506 | 4.79e-64 | 224 |
| Msa0011430 | AT1G19835.6 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G19835.5 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G19835.3 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G19835.1 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G19835.4 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G19835.2 | 39.773 | 264 | 127 | 4 | 164 | 396 | 61 | 323 | 3.29e-42 | 167 |
| Msa0011430 | AT1G47900.2 | 34.354 | 294 | 163 | 4 | 133 | 396 | 78 | 371 | 2.51e-38 | 155 |
| Msa0011430 | AT1G47900.3 | 34.354 | 294 | 163 | 4 | 133 | 396 | 78 | 371 | 2.69e-38 | 155 |
| Msa0011430 | AT1G47900.1 | 34.354 | 294 | 163 | 4 | 133 | 396 | 78 | 371 | 2.69e-38 | 155 |
| Msa0011430 | AT4G36120.2 | 39.286 | 224 | 111 | 2 | 169 | 367 | 76 | 299 | 4.88e-36 | 147 |
| Msa0011430 | AT4G36120.1 | 39.286 | 224 | 111 | 2 | 169 | 367 | 76 | 299 | 4.88e-36 | 147 |
| Msa0011430 | AT2G23360.1 | 38.389 | 211 | 105 | 2 | 182 | 367 | 42 | 252 | 1.24e-23 | 107 |
Find 175 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCATTCGGCAAGCTTTC+CGG | 0.169197 | 1_1:-17188765 | None:intergenic |
| TATCGTTTGCTTTGATTTGT+AGG | 0.197140 | 1_1:-17187970 | None:intergenic |
| CCAGAAAACAATAGCATCTT+TGG | 0.227504 | 1_1:+17188784 | Msa0011430:CDS |
| TTGAAGCATCTAATTTCTTC+TGG | 0.228386 | 1_1:-17187164 | None:intergenic |
| AGCTTTCCTCATATTTGTTC+AGG | 0.245451 | 1_1:-17188991 | None:intergenic |
| CAGCAAATGGATGAACTAAA+AGG | 0.264463 | 1_1:+17187807 | Msa0011430:CDS |
| AAAGGAGGCAGTTCAGAAAT+TGG | 0.278157 | 1_1:+17187920 | Msa0011430:CDS |
| AGAGAGACTCCACTTCTTCT+AGG | 0.279649 | 1_1:+17188942 | Msa0011430:CDS |
| TTCTTTGTCAACGCATTTAT+CGG | 0.285448 | 1_1:-17187751 | None:intergenic |
| CTGTTTAACCAAGTCTTCTT+TGG | 0.288311 | 1_1:-17186368 | None:intergenic |
| CCTACTACATGCATCATAAA+TGG | 0.290764 | 1_1:+17186070 | Msa0011430:CDS |
| TGCTATTAAGTGTAGGGAAT+TGG | 0.296111 | 1_1:+17188412 | Msa0011430:CDS |
| ATCACGTTCAATAGAAGATT+TGG | 0.299352 | 1_1:-17187190 | None:intergenic |
| AGATGAATGGTTCGGAAAAC+AGG | 0.317621 | 1_1:+17187526 | Msa0011430:CDS |
| TACTAGCTGTCTCAGCTACT+TGG | 0.324182 | 1_1:-17187323 | None:intergenic |
| TCATCAGAGGTAGATGAAAA+TGG | 0.339325 | 1_1:+17186097 | Msa0011430:CDS |
| CCAGGTGAAGCTGAGAGTTC+AGG | 0.360722 | 1_1:+17185188 | Msa0011430:CDS |
| AAAAGGGAAGTTAGAGAAAG+TGG | 0.369237 | 1_1:+17187824 | Msa0011430:CDS |
| CAGAAAACAATAGCATCTTT+GGG | 0.371111 | 1_1:+17188785 | Msa0011430:CDS |
| AGCCGAAAAGACTCGCGAAT+TGG | 0.372165 | 1_1:+17187101 | Msa0011430:CDS |
| GGAGTCACATCTTCAGTTAA+AGG | 0.375808 | 1_1:+17187902 | Msa0011430:CDS |
| GCAAATAAACTGACTGTAGT+TGG | 0.377130 | 1_1:-17189210 | None:intergenic |
| TCATCTAGATGGAGCACTTA+AGG | 0.382656 | 1_1:+17187017 | Msa0011430:CDS |
| GAAGAAGTGGAGTCTCTCTT+AGG | 0.390406 | 1_1:-17188938 | None:intergenic |
| CCCGCATGAGCAATGATTGC+TGG | 0.393330 | 1_1:-17188875 | None:intergenic |
| GAATGCTAGCAGTGTCAATA+AGG | 0.394242 | 1_1:-17188844 | None:intergenic |
| GCAATGATTGCTGGACTTGC+GGG | 0.396942 | 1_1:-17188866 | None:intergenic |
| GGTAGATGAAAATGGAGAAA+AGG | 0.409058 | 1_1:+17186105 | Msa0011430:CDS |
| GCTTTCCGGCCGCGAGTGCT+AGG | 0.411337 | 1_1:-17188751 | None:intergenic |
| AGGCCAACAGCTAGCTTGTA+TGG | 0.413438 | 1_1:+17188449 | Msa0011430:CDS |
| CTTAGAAGCAGAGGTTGAAA+AGG | 0.424596 | 1_1:+17188367 | Msa0011430:CDS |
| GTTAGAATCAGAGATTGTTA+AGG | 0.425792 | 1_1:+17188262 | Msa0011430:CDS |
| TGCTTTCTAACTCTTCCTCC+AGG | 0.429108 | 1_1:-17188115 | None:intergenic |
| GATAGAGTCACTCATCTAGA+TGG | 0.442078 | 1_1:+17187006 | Msa0011430:CDS |
| CGAAATTGCGGCCAAGTGTA+AGG | 0.444251 | 1_1:+17188301 | Msa0011430:CDS |
| TTCTAGCCGAATACCACTCT+TGG | 0.444679 | 1_1:-17189113 | None:intergenic |
| CGGATAAGAAGAGATGGTTA+TGG | 0.445207 | 1_1:+17185141 | Msa0011430:CDS |
| GCTTTCCTCATATTTGTTCA+GGG | 0.445685 | 1_1:-17188990 | None:intergenic |
| AGTTCTGAGAAGGGTCGAAT+TGG | 0.445703 | 1_1:+17189067 | Msa0011430:CDS |
| TGAGAAGTATTCTGATGAAC+AGG | 0.447757 | 1_1:+17185229 | Msa0011430:CDS |
| ATGGTTGGAGACAGAGAATA+TGG | 0.450444 | 1_1:+17187230 | Msa0011430:CDS |
| ATTAGAAGCCGACGTTGATA+AGG | 0.452774 | 1_1:+17188157 | Msa0011430:CDS |
| ATTAGAAGCAGAGGTTGATA+AGG | 0.454787 | 1_1:+17188052 | Msa0011430:CDS |
| GAGTTGATTTGGTGTTTGAT+TGG | 0.455896 | 1_1:+17185106 | Msa0011430:five_prime_UTR |
| AGACAGAGAATATGGCTCTC+AGG | 0.458084 | 1_1:+17187238 | Msa0011430:CDS |
| GGTGTTGATGCAATTTCATC+GGG | 0.459416 | 1_1:-17186043 | None:intergenic |
| GGGGAATCAGCTGAAATCTC+TGG | 0.459529 | 1_1:+17188805 | Msa0011430:CDS |
| AATTCGACCCTTCTCAGAAC+TGG | 0.460941 | 1_1:-17189065 | None:intergenic |
| GTATCAAAGGAATCTTCTAA+TGG | 0.462051 | 1_1:+17185935 | Msa0011430:CDS |
| TGTTATTAACATACCTGCTA+TGG | 0.464798 | 1_1:-17186413 | None:intergenic |
| AAAATCTAACTGACGGGTCG+AGG | 0.465615 | 1_1:+17186302 | Msa0011430:CDS |
| CAAATAAACTGACTGTAGTT+GGG | 0.470322 | 1_1:-17189209 | None:intergenic |
| CGCGAACCAAGAGTGGTATT+CGG | 0.471935 | 1_1:+17189107 | Msa0011430:CDS |
| TATTTGCTTAGGCTGGGAAA+AGG | 0.474120 | 1_1:+17186915 | Msa0011430:intron |
| TTCTCTTAAAATAGATCTGA+TGG | 0.475097 | 1_1:+17187647 | Msa0011430:CDS |
| AAGCAGCTTTGTTGAGGAGT+TGG | 0.475100 | 1_1:+17187722 | Msa0011430:CDS |
| CTGCTTGCGTTCTTAGTCTC+GGG | 0.481931 | 1_1:-17187705 | None:intergenic |
| GCTGCTTGCGTTCTTAGTCT+CGG | 0.482246 | 1_1:-17187706 | None:intergenic |
| TTCCGCCAGTTCCTTACACT+TGG | 0.484443 | 1_1:-17188312 | None:intergenic |
| AAGAAATTGCTATTAAGTGT+AGG | 0.491211 | 1_1:+17188405 | Msa0011430:CDS |
| CCTGAACTCTCAGCTTCACC+TGG | 0.491399 | 1_1:-17185188 | None:intergenic |
| GAAAGCAAATCTGCAATGCT+TGG | 0.492262 | 1_1:+17188131 | Msa0011430:CDS |
| TCTCCATACAAGCTAGCTGT+TGG | 0.492340 | 1_1:-17188452 | None:intergenic |
| GGACGAGATTCTAGTTCAAT+CGG | 0.494988 | 1_1:+17187260 | Msa0011430:CDS |
| TGCGGCCAAGTGTAAGGAAC+TGG | 0.495454 | 1_1:+17188307 | Msa0011430:CDS |
| AGGTGTTGATGCAATTTCAT+CGG | 0.499092 | 1_1:-17186044 | None:intergenic |
| ATTCTTGAATTGATCAAGCT+CGG | 0.500571 | 1_1:-17187592 | None:intergenic |
| AACTTGACATGGTCACTCTC+AGG | 0.504387 | 1_1:+17186968 | Msa0011430:CDS |
| TGACATCATGACTCAGCAAA+TGG | 0.504440 | 1_1:+17187794 | Msa0011430:CDS |
| AGCAAATGGATGAACTAAAA+GGG | 0.505397 | 1_1:+17187808 | Msa0011430:CDS |
| AGCAGAGGTTGATAAGGAAA+GGG | 0.505776 | 1_1:+17188058 | Msa0011430:CDS |
| AAGATCTAAATGACAGGTCA+AGG | 0.507900 | 1_1:+17186224 | Msa0011430:CDS |
| AACCAAGTTGTTCTGACTCG+TGG | 0.509651 | 1_1:+17187553 | Msa0011430:CDS |
| AGTCTGCCTCCATGCTCATT+AGG | 0.510576 | 1_1:-17188001 | None:intergenic |
| TGAACGTGATATGCGTCAAA+AGG | 0.511253 | 1_1:+17187203 | Msa0011430:CDS |
| CCATTTATGATGCATGTAGT+AGG | 0.514775 | 1_1:-17186070 | None:intergenic |
| AAGTCTTCTGAGAAGAGTCC+AGG | 0.514823 | 1_1:+17185170 | Msa0011430:CDS |
| AGAAATTGCTATTAAGTGTA+GGG | 0.517982 | 1_1:+17188406 | Msa0011430:CDS |
| AACTTGATGGATCAGCTTGT+CGG | 0.521719 | 1_1:-17187626 | None:intergenic |
| GTAGAAGAAGACGATGAAAG+TGG | 0.521926 | 1_1:-17189016 | None:intergenic |
| ATCAGAGATTGTTAAGGAGA+GGG | 0.522890 | 1_1:+17188268 | Msa0011430:CDS |
| TATTAAGTGTAGGGAATTGG+AGG | 0.523252 | 1_1:+17188415 | Msa0011430:CDS |
| AGAAATTGCGAGGAAGTGTA+AGG | 0.525164 | 1_1:+17188091 | Msa0011430:CDS |
| ATGTGGAGGATGCATTCAAA+TGG | 0.526273 | 1_1:+17188905 | Msa0011430:CDS |
| AGGTTGGCTGACGGTAGCTC+CGG | 0.528682 | 1_1:+17188962 | Msa0011430:CDS |
| AAGCAGAGGTTGATAAGGAA+AGG | 0.529296 | 1_1:+17188057 | Msa0011430:CDS |
| TGCATCCCTGAACAAATATG+AGG | 0.529869 | 1_1:+17188985 | Msa0011430:CDS |
| ATGATGCATGTAGTAGGTAA+AGG | 0.532551 | 1_1:-17186064 | None:intergenic |
| TGTCAATGCCAAAGAAGACT+TGG | 0.532566 | 1_1:+17186360 | Msa0011430:CDS |
| TATCCTCAAGATGAATGGTT+CGG | 0.533006 | 1_1:+17187518 | Msa0011430:CDS |
| ACTAGCTGTCTCAGCTACTT+GGG | 0.534380 | 1_1:-17187322 | None:intergenic |
| TTTCCGAACCATTCATCTTG+AGG | 0.535261 | 1_1:-17187521 | None:intergenic |
| GAGGACCTAGCACTCGCGGC+CGG | 0.536253 | 1_1:+17188746 | Msa0011430:CDS |
| GAGCACTTAAGGAGTGCGTT+AGG | 0.537278 | 1_1:+17187028 | Msa0011430:CDS |
| TGCTTCTAATAAGTCGACCT+TGG | 0.538097 | 1_1:-17188039 | None:intergenic |
| GCTATTGTTAATATATCGAA+TGG | 0.539242 | 1_1:+17186196 | Msa0011430:CDS |
| AGACTCCACTTCTTCTAGGT+TGG | 0.540766 | 1_1:+17188946 | Msa0011430:CDS |
| TGTGATATCCTCAAGATGAA+TGG | 0.547937 | 1_1:+17187513 | Msa0011430:CDS |
| GCGTCAAAAGGTTGAATGGT+TGG | 0.555698 | 1_1:+17187215 | Msa0011430:CDS |
| GTCAGCCAACCTAGAAGAAG+TGG | 0.556265 | 1_1:-17188951 | None:intergenic |
| GAAAAGAAGATCTAAATGAC+AGG | 0.556552 | 1_1:+17186218 | Msa0011430:CDS |
| AAATCACGCCAGTTCTGAGA+AGG | 0.557759 | 1_1:+17189057 | Msa0011430:CDS |
| AGATAGTCAGTCAGACAGTA+CGG | 0.558626 | 1_1:+17187470 | Msa0011430:CDS |
| TTGAAAGCAGGAAGTATCAA+AGG | 0.558653 | 1_1:+17185922 | Msa0011430:intron |
| CTCTCACACGCTATCTTCCA+AGG | 0.559134 | 1_1:+17188022 | Msa0011430:CDS |
| ATATTTGTTCAGGGATGCAC+CGG | 0.560765 | 1_1:-17188981 | None:intergenic |
| GCTATTGTTAATATACCGAA+TGG | 0.561611 | 1_1:+17186271 | Msa0011430:CDS |
| CCAGCAATCATTGCTCATGC+GGG | 0.562517 | 1_1:+17188875 | Msa0011430:CDS |
| GAAATCTCTGGCTACACTTG+AGG | 0.562631 | 1_1:+17188817 | Msa0011430:CDS |
| CCGACACTCGGACTCAAGCT+TGG | 0.562948 | 1_1:-17187376 | None:intergenic |
| GAACGCAAGCAGCTTTGTTG+AGG | 0.566647 | 1_1:+17187716 | Msa0011430:CDS |
| AGCAGAGGTTGAAAAGGAGA+GGG | 0.567149 | 1_1:+17188373 | Msa0011430:CDS |
| GACAGAGAATATGGCTCTCA+GGG | 0.568961 | 1_1:+17187239 | Msa0011430:CDS |
| GTTGCTGAAGAAGCCATAGC+AGG | 0.570953 | 1_1:+17186400 | Msa0011430:CDS |
| GATGAATGGTTCGGAAAACA+GGG | 0.571474 | 1_1:+17187527 | Msa0011430:CDS |
| TGAAATTGCAATAAAATGTG+AGG | 0.573293 | 1_1:+17188196 | Msa0011430:CDS |
| TGCGAGGAAGTGTAAGGACC+TGG | 0.573315 | 1_1:+17188097 | Msa0011430:CDS |
| ATCATCAACATCTTCAGCAC+AGG | 0.574007 | 1_1:-17185996 | None:intergenic |
| AATCAGAGATTGTTAAGGAG+AGG | 0.575395 | 1_1:+17188267 | Msa0011430:CDS |
| AGGAAGAAAATCTAACTGAC+GGG | 0.576645 | 1_1:+17186296 | Msa0011430:CDS |
| AAATCTAACTGACGGGTCGA+GGG | 0.578105 | 1_1:+17186303 | Msa0011430:CDS |
| GAAAAGTGAAGAGTGTATTG+AGG | 0.578966 | 1_1:+17187881 | Msa0011430:CDS |
| AATAAAATGTGAGGGTCTAG+AGG | 0.579023 | 1_1:+17188205 | Msa0011430:CDS |
| AGCAATGATTGCTGGACTTG+CGG | 0.580668 | 1_1:-17188867 | None:intergenic |
| GGTTGACTTCTTAGAAGCAG+AGG | 0.583228 | 1_1:+17188358 | Msa0011430:CDS |
| AACTGGCGGAAGAGTTTGAA+AGG | 0.585732 | 1_1:+17188324 | Msa0011430:CDS |
| AGAAAATCGCCTAATGAGCA+TGG | 0.586480 | 1_1:+17187992 | Msa0011430:CDS |
| GCAATCATTGCTCATGCGGG+TGG | 0.586991 | 1_1:+17188878 | Msa0011430:CDS |
| AAGGAAGAAAATCTAACTGA+CGG | 0.586993 | 1_1:+17186295 | Msa0011430:CDS |
| AATAGCAATTTCTTCAGACA+TGG | 0.587597 | 1_1:-17188396 | None:intergenic |
| AGAATACTTCTCAGAATGAG+AGG | 0.588629 | 1_1:-17185219 | None:intergenic |
| AATTGGAGGAAGAGATACTC+AGG | 0.589915 | 1_1:+17188429 | Msa0011430:CDS |
| TGTTAATATACCGAATGGAA+AGG | 0.591354 | 1_1:+17186276 | Msa0011430:CDS |
| GAGAGATTCAACGCAAAATG+AGG | 0.592680 | 1_1:-17187445 | None:intergenic |
| TGTCTTCAACCTCCGACACT+CGG | 0.593276 | 1_1:-17187388 | None:intergenic |
| TGGAGAAAAGAAAATCAAGC+AGG | 0.595873 | 1_1:+17188469 | Msa0011430:CDS |
| ACCAAGTTGTTCTGACTCGT+GGG | 0.598380 | 1_1:+17187554 | Msa0011430:CDS |
| AAGCAGAGGTTGAAAAGGAG+AGG | 0.601507 | 1_1:+17188372 | Msa0011430:CDS |
| GCAAAATGAGGATGAAGCAA+TGG | 0.602511 | 1_1:-17187433 | None:intergenic |
| AGCTTGAGTCCGAGTGTCGG+AGG | 0.604913 | 1_1:+17187379 | Msa0011430:CDS |
| TCCAGCAATCATTGCTCATG+CGG | 0.605279 | 1_1:+17188874 | Msa0011430:CDS |
| ATATGCGTCAAAAGGTTGAA+TGG | 0.606983 | 1_1:+17187211 | Msa0011430:CDS |
| GAAATTGCAATAAAATGTGA+GGG | 0.607539 | 1_1:+17188197 | Msa0011430:CDS |
| TGATCTAAATGACGGGTCAG+TGG | 0.607812 | 1_1:+17186150 | Msa0011430:CDS |
| CAATGACGGATAAGAAGAGA+TGG | 0.608130 | 1_1:+17185135 | Msa0011430:exon |
| TTGATTGGTAAACACAATGA+CGG | 0.614407 | 1_1:+17185121 | Msa0011430:exon |
| GGTCGACTTATTAGAAGCAG+AGG | 0.614728 | 1_1:+17188043 | Msa0011430:CDS |
| AGATCTAAATGACAGGTCAA+GGG | 0.615345 | 1_1:+17186225 | Msa0011430:CDS |
| GGCTGCGTCAGACGAAATTG+CGG | 0.615682 | 1_1:+17188289 | Msa0011430:CDS |
| TACGGAGAGGCTAACTGCGG+TGG | 0.617100 | 1_1:+17187488 | Msa0011430:CDS |
| CATAAATGGTGGTTCATCAG+AGG | 0.620066 | 1_1:+17186084 | Msa0011430:CDS |
| AGAACTGGCGTGATTTGTCA+AGG | 0.622883 | 1_1:-17189050 | None:intergenic |
| CTTTGTCGCAAGAAATTGCG+AGG | 0.632365 | 1_1:+17188081 | Msa0011430:CDS |
| TCAGGAGGACCTAGCACTCG+CGG | 0.635445 | 1_1:+17188742 | Msa0011430:intron |
| GTTTGAAAGGAAATGTGCGA+AGG | 0.637081 | 1_1:+17188337 | Msa0011430:CDS |
| CTCATGCGGGTGGAGAGATG+TGG | 0.640653 | 1_1:+17188888 | Msa0011430:CDS |
| AATCACGCCAGTTCTGAGAA+GGG | 0.642484 | 1_1:+17189058 | Msa0011430:CDS |
| GCCCACGAGTCAGAACAACT+TGG | 0.642821 | 1_1:-17187555 | None:intergenic |
| AAGCCGACGTTGATAAGGAG+AGG | 0.644803 | 1_1:+17188162 | Msa0011430:CDS |
| ACTTCTTCTAGGTTGGCTGA+CGG | 0.645634 | 1_1:+17188953 | Msa0011430:CDS |
| GTCACATCTTCAGTTAAAGG+AGG | 0.646496 | 1_1:+17187905 | Msa0011430:CDS |
| GGAGGCAGTTCAGAAATTGG+AGG | 0.651234 | 1_1:+17187923 | Msa0011430:CDS |
| TTTAAAGAAGAAACTTGACA+TGG | 0.658460 | 1_1:+17186957 | Msa0011430:CDS |
| CCAAGCTTGAGTCCGAGTGT+CGG | 0.663975 | 1_1:+17187376 | Msa0011430:CDS |
| ACTACATGCATCATAAATGG+TGG | 0.667278 | 1_1:+17186073 | Msa0011430:CDS |
| ATGCGGGTGGAGAGATGTGG+AGG | 0.668639 | 1_1:+17188891 | Msa0011430:CDS |
| GGCCAAGTGTAAGGAACTGG+CGG | 0.672251 | 1_1:+17188310 | Msa0011430:CDS |
| GTTCCTCTCCTTATCAACGT+CGG | 0.677034 | 1_1:-17188165 | None:intergenic |
| GTCAGTCAGACAGTACGGAG+AGG | 0.705314 | 1_1:+17187475 | Msa0011430:CDS |
| AGAAAACAATAGCATCTTTG+GGG | 0.712210 | 1_1:+17188786 | Msa0011430:CDS |
| GTTCTTAGTCTCGGGCAATG+CGG | 0.727474 | 1_1:-17187697 | None:intergenic |
| GAGGAAGTGTAAGGACCTGG+AGG | 0.738472 | 1_1:+17188100 | Msa0011430:CDS |
| AAATCGCCTAATGAGCATGG+AGG | 0.744978 | 1_1:+17187995 | Msa0011430:CDS |
| CAGTACGGAGAGGCTAACTG+CGG | 0.752055 | 1_1:+17187485 | Msa0011430:CDS |
| ATGAATGGTTCGGAAAACAG+GGG | 0.762929 | 1_1:+17187528 | Msa0011430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGAATTATTTTTTTACAT+TGG | + | chr1_1:17186793-17186812 | Msa0011430:intron | 10.0% |
| !! | GAAATTTATTTCATAAAAAT+AGG | + | chr1_1:17188546-17188565 | Msa0011430:intron | 10.0% |
| !! | TGTCATAATAATATAGTAAT+AGG | + | chr1_1:17185549-17185568 | Msa0011430:intron | 15.0% |
| !!! | GAAAGTATTTTTTTATCATT+AGG | + | chr1_1:17185775-17185794 | Msa0011430:intron | 15.0% |
| !! | ATTTCATAAAAATAGGTTAT+TGG | + | chr1_1:17188553-17188572 | Msa0011430:intron | 15.0% |
| !!! | GTTATATTTTGCTTTTATTT+TGG | + | chr1_1:17188619-17188638 | Msa0011430:intron | 15.0% |
| !!! | TTTTTCCTTATATTTGAAAT+CGG | + | chr1_1:17188657-17188676 | Msa0011430:intron | 15.0% |
| !! | TTGAATTTCAATTTCATGTA+TGG | + | chr1_1:17185305-17185324 | Msa0011430:intron | 20.0% |
| !! | TTATGTAGAACATATTTACA+CGG | - | chr1_1:17185431-17185450 | None:intergenic | 20.0% |
| !! | AATAACATCCAAGATATTAT+AGG | + | chr1_1:17188578-17188597 | Msa0011430:intron | 20.0% |
| !! | ATATCAAACCTATAATATCT+TGG | - | chr1_1:17188589-17188608 | None:intergenic | 20.0% |
| ! | CAAGCATAACTAAAAAAATG+TGG | - | chr1_1:17185596-17185615 | None:intergenic | 25.0% |
| ! | GAAAAAGATGATCTAAATGA+CGG | + | chr1_1:17186142-17186161 | Msa0011430:CDS | 25.0% |
| ! | AAAAAGATGATCTAAATGAC+GGG | + | chr1_1:17186143-17186162 | Msa0011430:CDS | 25.0% |
| ! | GCTATTGTTAATATATCGAA+TGG | + | chr1_1:17186196-17186215 | Msa0011430:CDS | 25.0% |
| ! | CAAAAAATATATCCAGGAAA+TGG | - | chr1_1:17186844-17186863 | None:intergenic | 25.0% |
| ! | CTCAATAAGACTACAAAAAA+GGG | - | chr1_1:17186885-17186904 | None:intergenic | 25.0% |
| !!! | GCCTTTTTATTTATTTGCTT+AGG | + | chr1_1:17186904-17186923 | Msa0011430:intron | 25.0% |
| ! | GCCTAAGCAAATAAATAAAA+AGG | - | chr1_1:17186908-17186927 | None:intergenic | 25.0% |
| !!! | TTTTATTTATTTGCTTAGGC+TGG | + | chr1_1:17186908-17186927 | Msa0011430:intron | 25.0% |
| ! | TTTATTTATTTGCTTAGGCT+GGG | + | chr1_1:17186909-17186928 | Msa0011430:intron | 25.0% |
| ! | TTTAAAGAAGAAACTTGACA+TGG | + | chr1_1:17186957-17186976 | Msa0011430:CDS | 25.0% |
| !!! | TCTATTTTAAGAGAACTTGA+TGG | - | chr1_1:17187642-17187661 | None:intergenic | 25.0% |
| ! | TTCTCTTAAAATAGATCTGA+TGG | + | chr1_1:17187647-17187666 | Msa0011430:CDS | 25.0% |
| ! | TGAAATTGCAATAAAATGTG+AGG | + | chr1_1:17188196-17188215 | Msa0011430:CDS | 25.0% |
| ! | GAAATTGCAATAAAATGTGA+GGG | + | chr1_1:17188197-17188216 | Msa0011430:CDS | 25.0% |
| !! | AAGAAATTGCTATTAAGTGT+AGG | + | chr1_1:17188405-17188424 | Msa0011430:CDS | 25.0% |
| !! | AGAAATTGCTATTAAGTGTA+GGG | + | chr1_1:17188406-17188425 | Msa0011430:CDS | 25.0% |
| ! | TTTCTATGAAGTATAGTTTG+AGG | - | chr1_1:17188530-17188549 | None:intergenic | 25.0% |
| ! | TAGGTTTGATATCATTAACT+AGG | + | chr1_1:17188597-17188616 | Msa0011430:intron | 25.0% |
| ! | TTCTTCCGATTTCAAATATA+AGG | - | chr1_1:17188665-17188684 | None:intergenic | 25.0% |
| !!! | TCTTTTGTGTTGAGTTGATT+TGG | + | chr1_1:17185095-17185114 | Msa0011430:five_prime_UTR | 30.0% |
| TTGATTGGTAAACACAATGA+CGG | + | chr1_1:17185121-17185140 | Msa0011430:exon | 30.0% | |
| GAAAGATTATCTGTGTTCTT+TGG | + | chr1_1:17185255-17185274 | Msa0011430:intron | 30.0% | |
| ACAATAGTAACTTCGTAACT+TGG | - | chr1_1:17185357-17185376 | None:intergenic | 30.0% | |
| CAATTACGATATCATCAGAT+TGG | - | chr1_1:17185385-17185404 | None:intergenic | 30.0% | |
| ! | ATCCTTTTGAATATAGCTAC+TGG | + | chr1_1:17185453-17185472 | Msa0011430:intron | 30.0% |
| ! | TCCTTTTGAATATAGCTACT+GGG | + | chr1_1:17185454-17185473 | Msa0011430:intron | 30.0% |
| TATCTTTCCTAGAATTGTTC+AGG | + | chr1_1:17185727-17185746 | Msa0011430:intron | 30.0% | |
| TTATCATTAGGAGTCAAACT+CGG | + | chr1_1:17185787-17185806 | Msa0011430:intron | 30.0% | |
| GTATCAAAGGAATCTTCTAA+TGG | + | chr1_1:17185935-17185954 | Msa0011430:CDS | 30.0% | |
| GAAAAGAAGATCTAAATGAC+AGG | + | chr1_1:17186218-17186237 | Msa0011430:CDS | 30.0% | |
| GCTATTGTTAATATACCGAA+TGG | + | chr1_1:17186271-17186290 | Msa0011430:CDS | 30.0% | |
| TGTTAATATACCGAATGGAA+AGG | + | chr1_1:17186276-17186295 | Msa0011430:CDS | 30.0% | |
| ! | AGATTTTCTTCCTTTCCATT+CGG | - | chr1_1:17186289-17186308 | None:intergenic | 30.0% |
| AAGGAAGAAAATCTAACTGA+CGG | + | chr1_1:17186295-17186314 | Msa0011430:CDS | 30.0% | |
| TGTTATTAACATACCTGCTA+TGG | - | chr1_1:17186416-17186435 | None:intergenic | 30.0% | |
| CTATTGCTTTCTGTAATTCT+CGG | + | chr1_1:17186451-17186470 | Msa0011430:intron | 30.0% | |
| ATTACCATTCTATCCTTTCT+TGG | + | chr1_1:17186503-17186522 | Msa0011430:intron | 30.0% | |
| ATATCCAAGAAAGGATAGAA+TGG | - | chr1_1:17186510-17186529 | None:intergenic | 30.0% | |
| TATCAACACATATCCAAGAA+AGG | - | chr1_1:17186519-17186538 | None:intergenic | 30.0% | |
| AAAAAAGGGAGAAAAAGAAG+AGG | - | chr1_1:17186871-17186890 | None:intergenic | 30.0% | |
| GCTCAATAAGACTACAAAAA+AGG | - | chr1_1:17186886-17186905 | None:intergenic | 30.0% | |
| ! | TTGAAGCATCTAATTTCTTC+TGG | - | chr1_1:17187167-17187186 | None:intergenic | 30.0% |
| ATCACGTTCAATAGAAGATT+TGG | - | chr1_1:17187193-17187212 | None:intergenic | 30.0% | |
| TAAAAATCAGAACTGTTGAG+AGG | + | chr1_1:17187289-17187308 | Msa0011430:CDS | 30.0% | |
| AAAAATCAGAACTGTTGAGA+GGG | + | chr1_1:17187290-17187309 | Msa0011430:CDS | 30.0% | |
| ATTCTTGAATTGATCAAGCT+CGG | - | chr1_1:17187595-17187614 | None:intergenic | 30.0% | |
| TTCTTTGTCAACGCATTTAT+CGG | - | chr1_1:17187754-17187773 | None:intergenic | 30.0% | |
| AGCAAATGGATGAACTAAAA+GGG | + | chr1_1:17187808-17187827 | Msa0011430:CDS | 30.0% | |
| !! | TATCGTTTGCTTTGATTTGT+AGG | - | chr1_1:17187973-17187992 | None:intergenic | 30.0% |
| GTTAGAATCAGAGATTGTTA+AGG | + | chr1_1:17188262-17188281 | Msa0011430:CDS | 30.0% | |
| AATAGCAATTTCTTCAGACA+TGG | - | chr1_1:17188399-17188418 | None:intergenic | 30.0% | |
| ! | CATTTGATCTTTTCTATGTC+AGG | + | chr1_1:17188724-17188743 | Msa0011430:intron | 30.0% |
| CAGAAAACAATAGCATCTTT+GGG | + | chr1_1:17188785-17188804 | Msa0011430:CDS | 30.0% | |
| AGAAAACAATAGCATCTTTG+GGG | + | chr1_1:17188786-17188805 | Msa0011430:CDS | 30.0% | |
| CAAATAAACTGACTGTAGTT+GGG | - | chr1_1:17189212-17189231 | None:intergenic | 30.0% | |
| !! | GAGTTGATTTGGTGTTTGAT+TGG | + | chr1_1:17185106-17185125 | Msa0011430:five_prime_UTR | 35.0% |
| AGAATACTTCTCAGAATGAG+AGG | - | chr1_1:17185222-17185241 | None:intergenic | 35.0% | |
| !! | TGAGAAGTATTCTGATGAAC+AGG | + | chr1_1:17185229-17185248 | Msa0011430:CDS | 35.0% |
| TTTCATGTATGGAAAACACG+AGG | + | chr1_1:17185316-17185335 | Msa0011430:intron | 35.0% | |
| ACCCAGTAGCTATATTCAAA+AGG | - | chr1_1:17185458-17185477 | None:intergenic | 35.0% | |
| TCAGAAAAGACCGAAAGAAT+TGG | + | chr1_1:17185658-17185677 | Msa0011430:intron | 35.0% | |
| CGATTCAAGACCAATTCTTT+CGG | - | chr1_1:17185671-17185690 | None:intergenic | 35.0% | |
| !! | CGAAAGAATTGGTCTTGAAT+CGG | + | chr1_1:17185669-17185688 | Msa0011430:intron | 35.0% |
| ACTTCTTCCTGAACAATTCT+AGG | - | chr1_1:17185737-17185756 | None:intergenic | 35.0% | |
| AGGAAGAAGTTATCGCTTAA+CGG | + | chr1_1:17185747-17185766 | Msa0011430:intron | 35.0% | |
| TGTGATTGAAACTTGAAAGC+AGG | + | chr1_1:17185910-17185929 | Msa0011430:intron | 35.0% | |
| !! | TTGAAAGCAGGAAGTATCAA+AGG | + | chr1_1:17185922-17185941 | Msa0011430:intron | 35.0% |
| !! | AGGTGTTGATGCAATTTCAT+CGG | - | chr1_1:17186047-17186066 | None:intergenic | 35.0% |
| ATGATGCATGTAGTAGGTAA+AGG | - | chr1_1:17186067-17186086 | None:intergenic | 35.0% | |
| CCATTTATGATGCATGTAGT+AGG | - | chr1_1:17186073-17186092 | None:intergenic | 35.0% | |
| CCTACTACATGCATCATAAA+TGG | + | chr1_1:17186070-17186089 | Msa0011430:CDS | 35.0% | |
| ACTACATGCATCATAAATGG+TGG | + | chr1_1:17186073-17186092 | Msa0011430:CDS | 35.0% | |
| TCATCAGAGGTAGATGAAAA+TGG | + | chr1_1:17186097-17186116 | Msa0011430:CDS | 35.0% | |
| GGTAGATGAAAATGGAGAAA+AGG | + | chr1_1:17186105-17186124 | Msa0011430:CDS | 35.0% | |
| AAGATCTAAATGACAGGTCA+AGG | + | chr1_1:17186224-17186243 | Msa0011430:CDS | 35.0% | |
| AGATCTAAATGACAGGTCAA+GGG | + | chr1_1:17186225-17186244 | Msa0011430:CDS | 35.0% | |
| AGGAAGAAAATCTAACTGAC+GGG | + | chr1_1:17186296-17186315 | Msa0011430:CDS | 35.0% | |
| CTGTTTAACCAAGTCTTCTT+TGG | - | chr1_1:17186371-17186390 | None:intergenic | 35.0% | |
| !! | GGATATGTGTTGATAATGTG+CGG | + | chr1_1:17186524-17186543 | Msa0011430:intron | 35.0% |
| !!! | TTTGGATTTTTTGCAGTCAC+TGG | - | chr1_1:17186641-17186660 | None:intergenic | 35.0% |
| ATGAGGAGAAACTTAGGATT+TGG | - | chr1_1:17186659-17186678 | None:intergenic | 35.0% | |
| CCATTTATGAGGAGAAACTT+AGG | - | chr1_1:17186665-17186684 | None:intergenic | 35.0% | |
| CCTAAGTTTCTCCTCATAAA+TGG | + | chr1_1:17186662-17186681 | Msa0011430:intron | 35.0% | |
| TTCTCCTCATAAATGGAGTT+AGG | + | chr1_1:17186669-17186688 | Msa0011430:intron | 35.0% | |
| CTAACCTAACTCCATTTATG+AGG | - | chr1_1:17186676-17186695 | None:intergenic | 35.0% | |
| CTCATAAATGGAGTTAGGTT+AGG | + | chr1_1:17186674-17186693 | Msa0011430:intron | 35.0% | |
| AGTTAGGTTAGGACTTAGAT+AGG | + | chr1_1:17186685-17186704 | Msa0011430:intron | 35.0% | |
| GTTAGGTTAGGACTTAGATA+GGG | + | chr1_1:17186686-17186705 | Msa0011430:intron | 35.0% | |
| GTTTGTATGATTCCATTTCC+TGG | + | chr1_1:17186829-17186848 | Msa0011430:intron | 35.0% | |
| GGATGGCAAAAAATATATCC+AGG | - | chr1_1:17186850-17186869 | None:intergenic | 35.0% | |
| ATATGCGTCAAAAGGTTGAA+TGG | + | chr1_1:17187211-17187230 | Msa0011430:CDS | 35.0% | |
| TGTGATATCCTCAAGATGAA+TGG | + | chr1_1:17187513-17187532 | Msa0011430:CDS | 35.0% | |
| TATCCTCAAGATGAATGGTT+CGG | + | chr1_1:17187518-17187537 | Msa0011430:CDS | 35.0% | |
| !! | AGATCTGATGGATGATTTTC+TGG | + | chr1_1:17187659-17187678 | Msa0011430:CDS | 35.0% |
| !! | GATGGATGATTTTCTGGAAA+TGG | + | chr1_1:17187665-17187684 | Msa0011430:CDS | 35.0% |
| CAGCAAATGGATGAACTAAA+AGG | + | chr1_1:17187807-17187826 | Msa0011430:CDS | 35.0% | |
| AAAAGGGAAGTTAGAGAAAG+TGG | + | chr1_1:17187824-17187843 | Msa0011430:CDS | 35.0% | |
| ! | GAAAAGTGAAGAGTGTATTG+AGG | + | chr1_1:17187881-17187900 | Msa0011430:CDS | 35.0% |
| !! | ATTAGAAGCAGAGGTTGATA+AGG | + | chr1_1:17188052-17188071 | Msa0011430:CDS | 35.0% |
| AATAAAATGTGAGGGTCTAG+AGG | + | chr1_1:17188205-17188224 | Msa0011430:CDS | 35.0% | |
| AATCAGAGATTGTTAAGGAG+AGG | + | chr1_1:17188267-17188286 | Msa0011430:CDS | 35.0% | |
| ATCAGAGATTGTTAAGGAGA+GGG | + | chr1_1:17188268-17188287 | Msa0011430:CDS | 35.0% | |
| TGCTATTAAGTGTAGGGAAT+TGG | + | chr1_1:17188412-17188431 | Msa0011430:CDS | 35.0% | |
| TATTAAGTGTAGGGAATTGG+AGG | + | chr1_1:17188415-17188434 | Msa0011430:CDS | 35.0% | |
| TGGAGAAAAGAAAATCAAGC+AGG | + | chr1_1:17188469-17188488 | Msa0011430:CDS | 35.0% | |
| GAAAAGAAAATCAAGCAGGT+TGG | + | chr1_1:17188473-17188492 | Msa0011430:intron | 35.0% | |
| ! | TTGATCTTTTCTATGTCAGG+AGG | + | chr1_1:17188727-17188746 | Msa0011430:intron | 35.0% |
| !! | TGCTATTGTTTTCTGGCATT+CGG | - | chr1_1:17188780-17188799 | None:intergenic | 35.0% |
| ! | CCAAAGATGCTATTGTTTTC+TGG | - | chr1_1:17188787-17188806 | None:intergenic | 35.0% |
| CCAGAAAACAATAGCATCTT+TGG | + | chr1_1:17188784-17188803 | Msa0011430:CDS | 35.0% | |
| GCTTTCCTCATATTTGTTCA+GGG | - | chr1_1:17188993-17189012 | None:intergenic | 35.0% | |
| AGCTTTCCTCATATTTGTTC+AGG | - | chr1_1:17188994-17189013 | None:intergenic | 35.0% | |
| GCAAATAAACTGACTGTAGT+TGG | - | chr1_1:17189213-17189232 | None:intergenic | 35.0% | |
| !! | CAATGACGGATAAGAAGAGA+TGG | + | chr1_1:17185135-17185154 | Msa0011430:exon | 40.0% |
| CGGATAAGAAGAGATGGTTA+TGG | + | chr1_1:17185141-17185160 | Msa0011430:CDS | 40.0% | |
| TGAATCTGGTACATTGTCTG+GGG | - | chr1_1:17185514-17185533 | None:intergenic | 40.0% | |
| GTGAATCTGGTACATTGTCT+GGG | - | chr1_1:17185515-17185534 | None:intergenic | 40.0% | |
| ! | TGTGTGAGTATTGTAAACCC+CGG | - | chr1_1:17185817-17185836 | None:intergenic | 40.0% |
| AGAAAAAAGCAGAGTGTGCA+GGG | - | chr1_1:17185867-17185886 | None:intergenic | 40.0% | |
| AAGAAAAAAGCAGAGTGTGC+AGG | - | chr1_1:17185868-17185887 | None:intergenic | 40.0% | |
| !!! | TACAGCTTTTGAGGTGACAT+CGG | - | chr1_1:17185975-17185994 | None:intergenic | 40.0% |
| ATCATCAACATCTTCAGCAC+AGG | - | chr1_1:17185999-17186018 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGCAATTTCATC+GGG | - | chr1_1:17186046-17186065 | None:intergenic | 40.0% |
| CATAAATGGTGGTTCATCAG+AGG | + | chr1_1:17186084-17186103 | Msa0011430:CDS | 40.0% | |
| TGTCAATGCCAAAGAAGACT+TGG | + | chr1_1:17186360-17186379 | Msa0011430:CDS | 40.0% | |
| ATTAGCTGCCGAATAATTCG+TGG | - | chr1_1:17186557-17186576 | None:intergenic | 40.0% | |
| AAGGGAGAAAAAGAAGAGGA+TGG | - | chr1_1:17186867-17186886 | None:intergenic | 40.0% | |
| TATTTGCTTAGGCTGGGAAA+AGG | + | chr1_1:17186915-17186934 | Msa0011430:intron | 40.0% | |
| GATAGAGTCACTCATCTAGA+TGG | + | chr1_1:17187006-17187025 | Msa0011430:CDS | 40.0% | |
| ! | TCATCTAGATGGAGCACTTA+AGG | + | chr1_1:17187017-17187036 | Msa0011430:CDS | 40.0% |
| ! | TTCCAATTCGCGAGTCTTTT+CGG | - | chr1_1:17187106-17187125 | None:intergenic | 40.0% |
| TGAACGTGATATGCGTCAAA+AGG | + | chr1_1:17187203-17187222 | Msa0011430:CDS | 40.0% | |
| ATGGTTGGAGACAGAGAATA+TGG | + | chr1_1:17187230-17187249 | Msa0011430:CDS | 40.0% | |
| !! | GGACGAGATTCTAGTTCAAT+CGG | + | chr1_1:17187260-17187279 | Msa0011430:CDS | 40.0% |
| GCAAAATGAGGATGAAGCAA+TGG | - | chr1_1:17187436-17187455 | None:intergenic | 40.0% | |
| GAGAGATTCAACGCAAAATG+AGG | - | chr1_1:17187448-17187467 | None:intergenic | 40.0% | |
| AGATAGTCAGTCAGACAGTA+CGG | + | chr1_1:17187470-17187489 | Msa0011430:CDS | 40.0% | |
| TTTCCGAACCATTCATCTTG+AGG | - | chr1_1:17187524-17187543 | None:intergenic | 40.0% | |
| ! | AGATGAATGGTTCGGAAAAC+AGG | + | chr1_1:17187526-17187545 | Msa0011430:CDS | 40.0% |
| ! | GATGAATGGTTCGGAAAACA+GGG | + | chr1_1:17187527-17187546 | Msa0011430:CDS | 40.0% |
| ! | ATGAATGGTTCGGAAAACAG+GGG | + | chr1_1:17187528-17187547 | Msa0011430:CDS | 40.0% |
| ! | AACTTGATGGATCAGCTTGT+CGG | - | chr1_1:17187629-17187648 | None:intergenic | 40.0% |
| TGACATCATGACTCAGCAAA+TGG | + | chr1_1:17187794-17187813 | Msa0011430:CDS | 40.0% | |
| GGAGTCACATCTTCAGTTAA+AGG | + | chr1_1:17187902-17187921 | Msa0011430:CDS | 40.0% | |
| GTCACATCTTCAGTTAAAGG+AGG | + | chr1_1:17187905-17187924 | Msa0011430:CDS | 40.0% | |
| AAAGGAGGCAGTTCAGAAAT+TGG | + | chr1_1:17187920-17187939 | Msa0011430:CDS | 40.0% | |
| AGAAAATCGCCTAATGAGCA+TGG | + | chr1_1:17187992-17188011 | Msa0011430:CDS | 40.0% | |
| TGCTTCTAATAAGTCGACCT+TGG | - | chr1_1:17188042-17188061 | None:intergenic | 40.0% | |
| !! | AAGCAGAGGTTGATAAGGAA+AGG | + | chr1_1:17188057-17188076 | Msa0011430:CDS | 40.0% |
| !! | AGCAGAGGTTGATAAGGAAA+GGG | + | chr1_1:17188058-17188077 | Msa0011430:CDS | 40.0% |
| ! | AGAAATTGCGAGGAAGTGTA+AGG | + | chr1_1:17188091-17188110 | Msa0011430:CDS | 40.0% |
| GAAAGCAAATCTGCAATGCT+TGG | + | chr1_1:17188131-17188150 | Msa0011430:CDS | 40.0% | |
| ATTAGAAGCCGACGTTGATA+AGG | + | chr1_1:17188157-17188176 | Msa0011430:CDS | 40.0% | |
| GTTTGAAAGGAAATGTGCGA+AGG | + | chr1_1:17188337-17188356 | Msa0011430:CDS | 40.0% | |
| CTTAGAAGCAGAGGTTGAAA+AGG | + | chr1_1:17188367-17188386 | Msa0011430:CDS | 40.0% | |
| AATTGGAGGAAGAGATACTC+AGG | + | chr1_1:17188429-17188448 | Msa0011430:CDS | 40.0% | |
| GAATGCTAGCAGTGTCAATA+AGG | - | chr1_1:17188847-17188866 | None:intergenic | 40.0% | |
| ATGTGGAGGATGCATTCAAA+TGG | + | chr1_1:17188905-17188924 | Msa0011430:CDS | 40.0% | |
| ATATTTGTTCAGGGATGCAC+CGG | - | chr1_1:17188984-17189003 | None:intergenic | 40.0% | |
| TGCATCCCTGAACAAATATG+AGG | + | chr1_1:17188985-17189004 | Msa0011430:CDS | 40.0% | |
| GTAGAAGAAGACGATGAAAG+TGG | - | chr1_1:17189019-17189038 | None:intergenic | 40.0% | |
| ! | AAGTCTTCTGAGAAGAGTCC+AGG | + | chr1_1:17185170-17185189 | Msa0011430:CDS | 45.0% |
| GGAAGGTGAATTCAGTAGCA+GGG | - | chr1_1:17185492-17185511 | None:intergenic | 45.0% | |
| GAATCTGGTACATTGTCTGG+GGG | - | chr1_1:17185513-17185532 | None:intergenic | 45.0% | |
| CGTGAATCTGGTACATTGTC+TGG | - | chr1_1:17185516-17185535 | None:intergenic | 45.0% | |
| !! | TACTCGCTTTTGCGTGAATC+TGG | - | chr1_1:17185528-17185547 | None:intergenic | 45.0% |
| AGGAGTCAAACTCGGTAATC+CGG | + | chr1_1:17185795-17185814 | Msa0011430:intron | 45.0% | |
| ACACAAGTGGTTAGTGCACA+AGG | - | chr1_1:17185840-17185859 | None:intergenic | 45.0% | |
| !!! | ACAGCTTTTGAGGTGACATC+GGG | - | chr1_1:17185974-17185993 | None:intergenic | 45.0% |
| !! | TGATCTAAATGACGGGTCAG+TGG | + | chr1_1:17186150-17186169 | Msa0011430:CDS | 45.0% |
| ! | AAAATCTAACTGACGGGTCG+AGG | + | chr1_1:17186302-17186321 | Msa0011430:CDS | 45.0% |
| ! | AAATCTAACTGACGGGTCGA+GGG | + | chr1_1:17186303-17186322 | Msa0011430:CDS | 45.0% |
| GTGCGTGTCCACGAATTATT+CGG | + | chr1_1:17186546-17186565 | Msa0011430:intron | 45.0% | |
| TGCTTGCTTTCTGTAACGTC+TGG | + | chr1_1:17186591-17186610 | Msa0011430:intron | 45.0% | |
| ! | TTTTTGCAGTCACTGGTGAG+TGG | - | chr1_1:17186634-17186653 | None:intergenic | 45.0% |
| AACTTGACATGGTCACTCTC+AGG | + | chr1_1:17186968-17186987 | Msa0011430:CDS | 45.0% | |
| GCGTCAAAAGGTTGAATGGT+TGG | + | chr1_1:17187215-17187234 | Msa0011430:CDS | 45.0% | |
| AGACAGAGAATATGGCTCTC+AGG | + | chr1_1:17187238-17187257 | Msa0011430:CDS | 45.0% | |
| GACAGAGAATATGGCTCTCA+GGG | + | chr1_1:17187239-17187258 | Msa0011430:CDS | 45.0% | |
| ACTAGCTGTCTCAGCTACTT+GGG | - | chr1_1:17187325-17187344 | None:intergenic | 45.0% | |
| TACTAGCTGTCTCAGCTACT+TGG | - | chr1_1:17187326-17187345 | None:intergenic | 45.0% | |
| ! | AACCAAGTTGTTCTGACTCG+TGG | + | chr1_1:17187553-17187572 | Msa0011430:CDS | 45.0% |
| ! | ACCAAGTTGTTCTGACTCGT+GGG | + | chr1_1:17187554-17187573 | Msa0011430:CDS | 45.0% |
| !! | AAGCAGCTTTGTTGAGGAGT+TGG | + | chr1_1:17187722-17187741 | Msa0011430:CDS | 45.0% |
| AAATCGCCTAATGAGCATGG+AGG | + | chr1_1:17187995-17188014 | Msa0011430:CDS | 45.0% | |
| ! | GGTCGACTTATTAGAAGCAG+AGG | + | chr1_1:17188043-17188062 | Msa0011430:CDS | 45.0% |
| CTTTGTCGCAAGAAATTGCG+AGG | + | chr1_1:17188081-17188100 | Msa0011430:CDS | 45.0% | |
| TGCTTTCTAACTCTTCCTCC+AGG | - | chr1_1:17188118-17188137 | None:intergenic | 45.0% | |
| GTTCCTCTCCTTATCAACGT+CGG | - | chr1_1:17188168-17188187 | None:intergenic | 45.0% | |
| AACTGGCGGAAGAGTTTGAA+AGG | + | chr1_1:17188324-17188343 | Msa0011430:CDS | 45.0% | |
| ! | GGTTGACTTCTTAGAAGCAG+AGG | + | chr1_1:17188358-17188377 | Msa0011430:CDS | 45.0% |
| AAGCAGAGGTTGAAAAGGAG+AGG | + | chr1_1:17188372-17188391 | Msa0011430:CDS | 45.0% | |
| AGCAGAGGTTGAAAAGGAGA+GGG | + | chr1_1:17188373-17188392 | Msa0011430:CDS | 45.0% | |
| TCTCCATACAAGCTAGCTGT+TGG | - | chr1_1:17188455-17188474 | None:intergenic | 45.0% | |
| GAAATCTCTGGCTACACTTG+AGG | + | chr1_1:17188817-17188836 | Msa0011430:CDS | 45.0% | |
| AGCAATGATTGCTGGACTTG+CGG | - | chr1_1:17188870-17188889 | None:intergenic | 45.0% | |
| TCCAGCAATCATTGCTCATG+CGG | + | chr1_1:17188874-17188893 | Msa0011430:CDS | 45.0% | |
| GAAGAAGTGGAGTCTCTCTT+AGG | - | chr1_1:17188941-17188960 | None:intergenic | 45.0% | |
| AGAGAGACTCCACTTCTTCT+AGG | + | chr1_1:17188942-17188961 | Msa0011430:CDS | 45.0% | |
| AGACTCCACTTCTTCTAGGT+TGG | + | chr1_1:17188946-17188965 | Msa0011430:CDS | 45.0% | |
| ! | ACTTCTTCTAGGTTGGCTGA+CGG | + | chr1_1:17188953-17188972 | Msa0011430:CDS | 45.0% |
| ! | AGAACTGGCGTGATTTGTCA+AGG | - | chr1_1:17189053-17189072 | None:intergenic | 45.0% |
| !! | AAATCACGCCAGTTCTGAGA+AGG | + | chr1_1:17189057-17189076 | Msa0011430:CDS | 45.0% |
| !! | AATCACGCCAGTTCTGAGAA+GGG | + | chr1_1:17189058-17189077 | Msa0011430:CDS | 45.0% |
| AATTCGACCCTTCTCAGAAC+TGG | - | chr1_1:17189068-17189087 | None:intergenic | 45.0% | |
| !! | AGTTCTGAGAAGGGTCGAAT+TGG | + | chr1_1:17189067-17189086 | Msa0011430:CDS | 45.0% |
| ! | TTTTTCTCGCGAACCAAGAG+TGG | + | chr1_1:17189100-17189119 | Msa0011430:CDS | 45.0% |
| TTCTAGCCGAATACCACTCT+TGG | - | chr1_1:17189116-17189135 | None:intergenic | 45.0% | |
| GGGAAGGTGAATTCAGTAGC+AGG | - | chr1_1:17185493-17185512 | None:intergenic | 50.0% | |
| GGAGTCAAACTCGGTAATCC+GGG | + | chr1_1:17185796-17185815 | Msa0011430:intron | 50.0% | |
| GAGTCAAACTCGGTAATCCG+GGG | + | chr1_1:17185797-17185816 | Msa0011430:intron | 50.0% | |
| TGTGCAGGGTCTAACACAAG+TGG | - | chr1_1:17185853-17185872 | None:intergenic | 50.0% | |
| ! | AGCACAGGCTACAGCTTTTG+AGG | - | chr1_1:17185984-17186003 | None:intergenic | 50.0% |
| GTTGCTGAAGAAGCCATAGC+AGG | + | chr1_1:17186400-17186419 | Msa0011430:CDS | 50.0% | |
| ! | GAGCACTTAAGGAGTGCGTT+AGG | + | chr1_1:17187028-17187047 | Msa0011430:CDS | 50.0% |
| AGCCGAAAAGACTCGCGAAT+TGG | + | chr1_1:17187101-17187120 | Msa0011430:CDS | 50.0% | |
| TGTCTTCAACCTCCGACACT+CGG | - | chr1_1:17187391-17187410 | None:intergenic | 50.0% | |
| GTTCTTAGTCTCGGGCAATG+CGG | - | chr1_1:17187700-17187719 | None:intergenic | 50.0% | |
| CTGCTTGCGTTCTTAGTCTC+GGG | - | chr1_1:17187708-17187727 | None:intergenic | 50.0% | |
| GCTGCTTGCGTTCTTAGTCT+CGG | - | chr1_1:17187709-17187728 | None:intergenic | 50.0% | |
| !! | GAACGCAAGCAGCTTTGTTG+AGG | + | chr1_1:17187716-17187735 | Msa0011430:CDS | 50.0% |
| GGAGGCAGTTCAGAAATTGG+AGG | + | chr1_1:17187923-17187942 | Msa0011430:CDS | 50.0% | |
| AGTCTGCCTCCATGCTCATT+AGG | - | chr1_1:17188004-17188023 | None:intergenic | 50.0% | |
| CTCTCACACGCTATCTTCCA+AGG | + | chr1_1:17188022-17188041 | Msa0011430:CDS | 50.0% | |
| ! | AAGCCGACGTTGATAAGGAG+AGG | + | chr1_1:17188162-17188181 | Msa0011430:CDS | 50.0% |
| CGAAATTGCGGCCAAGTGTA+AGG | + | chr1_1:17188301-17188320 | Msa0011430:CDS | 50.0% | |
| TTCCGCCAGTTCCTTACACT+TGG | - | chr1_1:17188315-17188334 | None:intergenic | 50.0% | |
| ! | AGGCCAACAGCTAGCTTGTA+TGG | + | chr1_1:17188449-17188468 | Msa0011430:CDS | 50.0% |
| GGGGAATCAGCTGAAATCTC+TGG | + | chr1_1:17188805-17188824 | Msa0011430:CDS | 50.0% | |
| GCAATGATTGCTGGACTTGC+GGG | - | chr1_1:17188869-17188888 | None:intergenic | 50.0% | |
| CCAGCAATCATTGCTCATGC+GGG | + | chr1_1:17188875-17188894 | Msa0011430:CDS | 50.0% | |
| GTCAGCCAACCTAGAAGAAG+TGG | - | chr1_1:17188954-17188973 | None:intergenic | 50.0% | |
| CGCGAACCAAGAGTGGTATT+CGG | + | chr1_1:17189107-17189126 | Msa0011430:CDS | 50.0% | |
| CCTGAACTCTCAGCTTCACC+TGG | - | chr1_1:17185191-17185210 | None:intergenic | 55.0% | |
| CCAGGTGAAGCTGAGAGTTC+AGG | + | chr1_1:17185188-17185207 | Msa0011430:CDS | 55.0% | |
| CTGGTACATTGTCTGGGGGA+AGG | - | chr1_1:17185509-17185528 | None:intergenic | 55.0% | |
| CCAAGCTTGAGTCCGAGTGT+CGG | + | chr1_1:17187376-17187395 | Msa0011430:CDS | 55.0% | |
| GTCAGTCAGACAGTACGGAG+AGG | + | chr1_1:17187475-17187494 | Msa0011430:CDS | 55.0% | |
| CAGTACGGAGAGGCTAACTG+CGG | + | chr1_1:17187485-17187504 | Msa0011430:CDS | 55.0% | |
| GCCCACGAGTCAGAACAACT+TGG | - | chr1_1:17187558-17187577 | None:intergenic | 55.0% | |
| ! | TGCGAGGAAGTGTAAGGACC+TGG | + | chr1_1:17188097-17188116 | Msa0011430:CDS | 55.0% |
| ! | GAGGAAGTGTAAGGACCTGG+AGG | + | chr1_1:17188100-17188119 | Msa0011430:CDS | 55.0% |
| GGCTGCGTCAGACGAAATTG+CGG | + | chr1_1:17188289-17188308 | Msa0011430:CDS | 55.0% | |
| TGCGGCCAAGTGTAAGGAAC+TGG | + | chr1_1:17188307-17188326 | Msa0011430:CDS | 55.0% | |
| GGCCAAGTGTAAGGAACTGG+CGG | + | chr1_1:17188310-17188329 | Msa0011430:CDS | 55.0% | |
| CTGGCATTCGGCAAGCTTTC+CGG | - | chr1_1:17188768-17188787 | None:intergenic | 55.0% | |
| CCCGCATGAGCAATGATTGC+TGG | - | chr1_1:17188878-17188897 | None:intergenic | 55.0% | |
| GCAATCATTGCTCATGCGGG+TGG | + | chr1_1:17188878-17188897 | Msa0011430:CDS | 55.0% | |
| CCGACACTCGGACTCAAGCT+TGG | - | chr1_1:17187379-17187398 | None:intergenic | 60.0% | |
| !! | AGCTTGAGTCCGAGTGTCGG+AGG | + | chr1_1:17187379-17187398 | Msa0011430:CDS | 60.0% |
| TACGGAGAGGCTAACTGCGG+TGG | + | chr1_1:17187488-17187507 | Msa0011430:CDS | 60.0% | |
| TCAGGAGGACCTAGCACTCG+CGG | + | chr1_1:17188742-17188761 | Msa0011430:intron | 60.0% | |
| CTCATGCGGGTGGAGAGATG+TGG | + | chr1_1:17188888-17188907 | Msa0011430:CDS | 60.0% | |
| ATGCGGGTGGAGAGATGTGG+AGG | + | chr1_1:17188891-17188910 | Msa0011430:CDS | 60.0% | |
| ! | AGGTTGGCTGACGGTAGCTC+CGG | + | chr1_1:17188962-17188981 | Msa0011430:CDS | 60.0% |
| GAGGACCTAGCACTCGCGGC+CGG | + | chr1_1:17188746-17188765 | Msa0011430:CDS | 70.0% | |
| GCTTTCCGGCCGCGAGTGCT+AGG | - | chr1_1:17188754-17188773 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17185085 | 17189239 | 17185085 | ID=Msa0011430;Name=Msa0011430 |
| chr1_1 | mRNA | 17185085 | 17189239 | 17185085 | ID=Msa0011430-mRNA-1;Parent=Msa0011430;Name=Msa0011430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=52|1|0.75|1|1|1|4|98|854 |
| chr1_1 | exon | 17185085 | 17185250 | 17185085 | ID=Msa0011430-mRNA-1:exon:6235;Parent=Msa0011430-mRNA-1 |
| chr1_1 | exon | 17185932 | 17186421 | 17185932 | ID=Msa0011430-mRNA-1:exon:6236;Parent=Msa0011430-mRNA-1 |
| chr1_1 | exon | 17186926 | 17188490 | 17186926 | ID=Msa0011430-mRNA-1:exon:6237;Parent=Msa0011430-mRNA-1 |
| chr1_1 | exon | 17188746 | 17189239 | 17188746 | ID=Msa0011430-mRNA-1:exon:6238;Parent=Msa0011430-mRNA-1 |
| chr1_1 | five_prime_UTR | 17185085 | 17185136 | 17185085 | ID=Msa0011430-mRNA-1:five_prime_utr;Parent=Msa0011430-mRNA-1 |
| chr1_1 | CDS | 17185137 | 17185250 | 17185137 | ID=Msa0011430-mRNA-1:cds;Parent=Msa0011430-mRNA-1 |
| chr1_1 | CDS | 17185932 | 17186421 | 17185932 | ID=Msa0011430-mRNA-1:cds;Parent=Msa0011430-mRNA-1 |
| chr1_1 | CDS | 17186926 | 17188490 | 17186926 | ID=Msa0011430-mRNA-1:cds;Parent=Msa0011430-mRNA-1 |
| chr1_1 | CDS | 17188746 | 17189141 | 17188746 | ID=Msa0011430-mRNA-1:cds;Parent=Msa0011430-mRNA-1 |
| chr1_1 | three_prime_UTR | 17189142 | 17189239 | 17189142 | ID=Msa0011430-mRNA-1:three_prime_utr;Parent=Msa0011430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
