Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011980 | Msa0105650 | 0.928754 | 1.845570e-92 | -8.615850e-47 |
| Msa0011980 | Msa0152220 | 0.847360 | 1.215193e-59 | -8.615850e-47 |
| Msa0011980 | Msa0674480 | 0.807825 | 4.183764e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTTGATGCACTTATATT+TGG | 0.174564 | 1_1:+18048409 | Msa0011980:three_prime_UTR |
| CAGGAATTTGACTCTTCTTA+TGG | 0.240599 | 1_1:+18048141 | Msa0011980:intron |
| TTTAAGTGCAAAATTTCTTC+TGG | 0.293024 | 1_1:+18048456 | Msa0011980:three_prime_UTR |
| TGCATCGTTGGTACTAGTTT+TGG | 0.319023 | 1_1:+18048177 | Msa0011980:CDS |
| CAAGATGGTCACGTGCAAAT+TGG | 0.319181 | 1_1:-18045704 | None:intergenic |
| AGGTTCATATCCTTCTCTTC+AGG | 0.345046 | 1_1:+18048250 | Msa0011980:CDS |
| ACTATAAGTTATGCATCCTT+TGG | 0.349909 | 1_1:+18048311 | Msa0011980:CDS |
| AAGTAGAGTAACCTTCTTAA+GGG | 0.392735 | 1_1:-18045772 | None:intergenic |
| AAAGTAGAGTAACCTTCTTA+AGG | 0.404061 | 1_1:-18045773 | None:intergenic |
| TTCAGTTTCTACATATCATC+TGG | 0.405156 | 1_1:-18048357 | None:intergenic |
| CAGGACAGCTGTTGCACCAT+TGG | 0.413092 | 1_1:+18048269 | Msa0011980:CDS |
| CTATAAGTTATGCATCCTTT+GGG | 0.425627 | 1_1:+18048312 | Msa0011980:CDS |
| CCAACGATGCAGTGCCAAGC+TGG | 0.427189 | 1_1:-18048165 | None:intergenic |
| TATGTTACTCACTCTGTTGG+TGG | 0.459409 | 1_1:+18048204 | Msa0011980:CDS |
| CCAGCTTGGCACTGCATCGT+TGG | 0.460463 | 1_1:+18048165 | Msa0011980:CDS |
| TTACTGTCAGGCTTCTTAGC+AGG | 0.476393 | 1_1:-18045735 | None:intergenic |
| AGTGCCAAGTGTTTACTGTC+AGG | 0.499308 | 1_1:-18045747 | None:intergenic |
| ACTCTTCTTATGGCCCAGCT+TGG | 0.503560 | 1_1:+18048151 | Msa0011980:CDS |
| CAACGATGCAGTGCCAAGCT+GGG | 0.507803 | 1_1:-18048164 | None:intergenic |
| TCCTATGTTACTCACTCTGT+TGG | 0.508362 | 1_1:+18048201 | Msa0011980:CDS |
| ATAGTTGTGGAAGTTATGAA+TGG | 0.517223 | 1_1:-18048293 | None:intergenic |
| CTTGGCACTCTCCCTTAAGA+AGG | 0.524847 | 1_1:+18045761 | Msa0011980:CDS |
| TGGAAAGCATGTTTCTGCAA+AGG | 0.538030 | 1_1:-18045684 | None:intergenic |
| CAACAGCTGTCCTGAAGAGA+AGG | 0.560687 | 1_1:-18048260 | None:intergenic |
| ACCAACAGAGTGAGTAACAT+AGG | 0.582734 | 1_1:-18048202 | None:intergenic |
| GGATGCATAACTTATAGTTG+TGG | 0.590622 | 1_1:-18048306 | None:intergenic |
| AAGGATATGAACCTTATCGA+TGG | 0.591339 | 1_1:-18048241 | None:intergenic |
| CTTTGAAATTAATTTCCCAA+AGG | 0.603603 | 1_1:-18048327 | None:intergenic |
| TAGCAGGCAAAGAATCAAGA+TGG | 0.616352 | 1_1:-18045719 | None:intergenic |
| GAAGCCTGACAGTAAACACT+TGG | 0.632851 | 1_1:+18045743 | Msa0011980:CDS |
| GGAAGTTATGAATGGTCCAA+TGG | 0.665369 | 1_1:-18048285 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATGTTTTTATGTT+TGG | + | chr1_1:18045899-18045918 | Msa0011980:intron | 10.0% |
| !!! | AAATTTGTTCATATTAAAAT+TGG | - | chr1_1:18047454-18047473 | None:intergenic | 10.0% |
| !!! | TAATTGAAACTAGAATTTTA+AGG | + | chr1_1:18046006-18046025 | Msa0011980:intron | 15.0% |
| !! | AACAAAAAATCATATATTTG+CGG | - | chr1_1:18047247-18047266 | None:intergenic | 15.0% |
| !! | AAATTTATTCACATTGAAAT+TGG | + | chr1_1:18047366-18047385 | Msa0011980:intron | 15.0% |
| !! | TGTATTATACAAAAAAATCT+AGG | - | chr1_1:18047554-18047573 | None:intergenic | 15.0% |
| !! | TTAATGAATTATACTATCTT+TGG | + | chr1_1:18047973-18047992 | Msa0011980:intron | 15.0% |
| !! | TAATGAATTATACTATCTTT+GGG | + | chr1_1:18047974-18047993 | Msa0011980:intron | 15.0% |
| !!! | TAGAGTTGATTTTAAATGTT+TGG | + | chr1_1:18045959-18045978 | Msa0011980:intron | 20.0% |
| !!! | TCAAAATCAATTTTTGTCAT+AGG | + | chr1_1:18046117-18046136 | Msa0011980:intron | 20.0% |
| !!! | AACATAGTTTTTTGAAAACT+TGG | + | chr1_1:18046209-18046228 | Msa0011980:intron | 20.0% |
| !!! | ATATGCAAATTTTCGATATT+TGG | + | chr1_1:18046418-18046437 | Msa0011980:intron | 20.0% |
| !!! | AAATTTTCGATATTTGGTAT+TGG | + | chr1_1:18046424-18046443 | Msa0011980:intron | 20.0% |
| !!! | AATTTTCGATATTTGGTATT+GGG | + | chr1_1:18046425-18046444 | Msa0011980:intron | 20.0% |
| !!! | TATCTAATGTCTTAAAGTTT+TGG | + | chr1_1:18046805-18046824 | Msa0011980:intron | 20.0% |
| !!! | ATCTAATGTCTTAAAGTTTT+GGG | + | chr1_1:18046806-18046825 | Msa0011980:intron | 20.0% |
| !! | TCCTTAAAACATGTTATAAA+AGG | - | chr1_1:18047112-18047131 | None:intergenic | 20.0% |
| !! | TTTAATCTTTACTAAAAGGA+AGG | + | chr1_1:18047204-18047223 | Msa0011980:intron | 20.0% |
| !!! | ATGTATCAATTTTTTGCTTT+TGG | + | chr1_1:18047318-18047337 | Msa0011980:intron | 20.0% |
| !!! | TTAATATGAACAAATTTTGC+AGG | + | chr1_1:18047457-18047476 | Msa0011980:intron | 20.0% |
| !!! | TAATATGAACAAATTTTGCA+GGG | + | chr1_1:18047458-18047477 | Msa0011980:intron | 20.0% |
| !!! | TCTATGATCACTTTAATTTT+AGG | - | chr1_1:18047521-18047540 | None:intergenic | 20.0% |
| !! | TTACTTCATACTTTAATACA+TGG | - | chr1_1:18047725-18047744 | None:intergenic | 20.0% |
| !! | AAATCAATAAATAAGTGTCT+TGG | + | chr1_1:18047783-18047802 | Msa0011980:intron | 20.0% |
| !! | ATACATTTAGTAAAAGACAA+AGG | - | chr1_1:18047941-18047960 | None:intergenic | 20.0% |
| !! | TTTCAATGTTCATTTCTAAA+TGG | + | chr1_1:18048075-18048094 | Msa0011980:intron | 20.0% |
| !!! | TTTTTTCGAAAATCTGTTTC+TGG | + | chr1_1:18045802-18045821 | Msa0011980:intron | 25.0% |
| !!! | TTTTTCGAAAATCTGTTTCT+GGG | + | chr1_1:18045803-18045822 | Msa0011980:intron | 25.0% |
| ! | TTTATGTTTGGTTACACATT+TGG | + | chr1_1:18045911-18045930 | Msa0011980:intron | 25.0% |
| ! | TGTTTGAGTATATTCTTGTA+AGG | - | chr1_1:18046057-18046076 | None:intergenic | 25.0% |
| ! | GTTATCCTAATTAAAGGTTT+GGG | - | chr1_1:18046391-18046410 | None:intergenic | 25.0% |
| !! | GATTTGGTTATCCTAATTAA+AGG | - | chr1_1:18046397-18046416 | None:intergenic | 25.0% |
| ! | CGAAAATTTGCATATAGATT+TGG | - | chr1_1:18046413-18046432 | None:intergenic | 25.0% |
| !! | TCAACATTTTACCTATTCAT+AGG | - | chr1_1:18046762-18046781 | None:intergenic | 25.0% |
| ! | AGAAAGAATATGTAGACTAT+AGG | - | chr1_1:18047059-18047078 | None:intergenic | 25.0% |
| ! | ATAGTCTACATATTCTTTCT+AGG | + | chr1_1:18047059-18047078 | Msa0011980:intron | 25.0% |
| !! | GCCTTTTATAACATGTTTTA+AGG | + | chr1_1:18047108-18047127 | Msa0011980:intron | 25.0% |
| !!! | TGTTTTAAGGAAAAAGAAAG+AGG | + | chr1_1:18047121-18047140 | Msa0011980:intron | 25.0% |
| ! | AAATAAGACCAATATAAAGC+AGG | - | chr1_1:18047178-18047197 | None:intergenic | 25.0% |
| !! | CCTTTTAGTAAAGATTAAAG+AGG | - | chr1_1:18047203-18047222 | None:intergenic | 25.0% |
| ! | CCTCTTTAATCTTTACTAAA+AGG | + | chr1_1:18047200-18047219 | Msa0011980:intron | 25.0% |
| !!! | CAAAAGAAAGATTTTTTTGC+AGG | - | chr1_1:18047277-18047296 | None:intergenic | 25.0% |
| !! | TCAATGTGAATAAATTTTGC+AGG | - | chr1_1:18047363-18047382 | None:intergenic | 25.0% |
| !!! | TCATTTTAGTCCTTATTTTG+AGG | - | chr1_1:18047419-18047438 | None:intergenic | 25.0% |
| ! | TATGTTTATTAGCTGTATGT+TGG | + | chr1_1:18047755-18047774 | Msa0011980:intron | 25.0% |
| !!! | ATAACTTTGATAGTGAAATG+AGG | - | chr1_1:18047876-18047895 | None:intergenic | 25.0% |
| ! | TTCTAAATGGAAAATGACTT+TGG | + | chr1_1:18048088-18048107 | Msa0011980:intron | 25.0% |
| !! | AACAATAGTAAGAATTTTGC+TGG | + | chr1_1:18048113-18048132 | Msa0011980:intron | 25.0% |
| !!! | CTTTGAAATTAATTTCCCAA+AGG | - | chr1_1:18048330-18048349 | None:intergenic | 25.0% |
| ! | GTATTTGATGCACTTATATT+TGG | + | chr1_1:18048409-18048428 | Msa0011980:three_prime_UTR | 25.0% |
| !!! | TATTTGGATTTTTTTGTCTG+TGG | + | chr1_1:18048425-18048444 | Msa0011980:three_prime_UTR | 25.0% |
| ! | TTTAAGTGCAAAATTTCTTC+TGG | + | chr1_1:18048456-18048475 | Msa0011980:three_prime_UTR | 25.0% |
| AAGTAGAGTAACCTTCTTAA+GGG | - | chr1_1:18045775-18045794 | None:intergenic | 30.0% | |
| AAAGTAGAGTAACCTTCTTA+AGG | - | chr1_1:18045776-18045795 | None:intergenic | 30.0% | |
| GAACATAACACAACAAATCA+TGG | - | chr1_1:18045843-18045862 | None:intergenic | 30.0% | |
| !! | TTGCCTCTACAATTGATTTT+CGG | + | chr1_1:18046031-18046050 | Msa0011980:intron | 30.0% |
| AATCCAATGACCAACTAATT+TGG | + | chr1_1:18046237-18046256 | Msa0011980:intron | 30.0% | |
| ATCCAATGACCAACTAATTT+GGG | + | chr1_1:18046238-18046257 | Msa0011980:intron | 30.0% | |
| !! | ACTTTGGTTTGGCTTTAATT+GGG | - | chr1_1:18046291-18046310 | None:intergenic | 30.0% |
| !! | AACTTTGGTTTGGCTTTAAT+TGG | - | chr1_1:18046292-18046311 | None:intergenic | 30.0% |
| GGTTATCCTAATTAAAGGTT+TGG | - | chr1_1:18046392-18046411 | None:intergenic | 30.0% | |
| CATATGAACTAATGCATGTT+TGG | + | chr1_1:18046515-18046534 | Msa0011980:intron | 30.0% | |
| AATCAAGCTTAGTGCATATT+CGG | - | chr1_1:18046630-18046649 | None:intergenic | 30.0% | |
| !!! | TAATGTCTTAAAGTTTTGGG+TGG | + | chr1_1:18046809-18046828 | Msa0011980:intron | 30.0% |
| AAGAAGTAACTGCATACATA+AGG | - | chr1_1:18046988-18047007 | None:intergenic | 30.0% | |
| AAAACTTGTAACTAAGAGCA+TGG | - | chr1_1:18047014-18047033 | None:intergenic | 30.0% | |
| TAACAGATCCTGCTTTATAT+TGG | + | chr1_1:18047167-18047186 | Msa0011980:intron | 30.0% | |
| GCAGGAAATAAAACAAAACA+AGG | - | chr1_1:18047345-18047364 | None:intergenic | 30.0% | |
| TACTTGTTTCATTCACACAT+GGG | + | chr1_1:18047645-18047664 | Msa0011980:intron | 30.0% | |
| ! | TTCACACATGGGAATTTTTA+TGG | + | chr1_1:18047656-18047675 | Msa0011980:intron | 30.0% |
| ! | GAATTTTTATGGTCCAACAA+AGG | + | chr1_1:18047667-18047686 | Msa0011980:intron | 30.0% |
| TGAAACTCTTGTTACACTAA+TGG | + | chr1_1:18047902-18047921 | Msa0011980:intron | 30.0% | |
| TTTGATTCTTGCACAATTCT+TGG | + | chr1_1:18048002-18048021 | Msa0011980:intron | 30.0% | |
| ATAGTTGTGGAAGTTATGAA+TGG | - | chr1_1:18048296-18048315 | None:intergenic | 30.0% | |
| ACTATAAGTTATGCATCCTT+TGG | + | chr1_1:18048311-18048330 | Msa0011980:CDS | 30.0% | |
| CTATAAGTTATGCATCCTTT+GGG | + | chr1_1:18048312-18048331 | Msa0011980:CDS | 30.0% | |
| TTCAGTTTCTACATATCATC+TGG | - | chr1_1:18048360-18048379 | None:intergenic | 30.0% | |
| !!! | TGTTCAACACTGTTTTGACT+TGG | + | chr1_1:18045858-18045877 | Msa0011980:intron | 35.0% |
| ATGTTTGGTTACACATTTGG+AGG | + | chr1_1:18045914-18045933 | Msa0011980:intron | 35.0% | |
| ! | TAATTAAAGGTTTGGGACCT+TGG | - | chr1_1:18046384-18046403 | None:intergenic | 35.0% |
| AAGGTCCCAAACCTTTAATT+AGG | + | chr1_1:18046383-18046402 | Msa0011980:intron | 35.0% | |
| GTACTAATGCTAGGTCAATT+GGG | + | chr1_1:18046447-18046466 | Msa0011980:intron | 35.0% | |
| CTAATGCATGTTTGGTATCA+TGG | + | chr1_1:18046523-18046542 | Msa0011980:intron | 35.0% | |
| !! | TTAGTGTTGCTTGAACTTGT+TGG | + | chr1_1:18046704-18046723 | Msa0011980:intron | 35.0% |
| !! | TAGTGTTGCTTGAACTTGTT+GGG | + | chr1_1:18046705-18046724 | Msa0011980:intron | 35.0% |
| TTACTATGAGAAGTTCCGTT+GGG | - | chr1_1:18046900-18046919 | None:intergenic | 35.0% | |
| ATTACTATGAGAAGTTCCGT+TGG | - | chr1_1:18046901-18046920 | None:intergenic | 35.0% | |
| ATAAAGCAGGATCTGTTATG+TGG | - | chr1_1:18047165-18047184 | None:intergenic | 35.0% | |
| GATCATAGCTCCTCAAAATA+AGG | + | chr1_1:18047406-18047425 | Msa0011980:intron | 35.0% | |
| CATGTGTGAATGAAACAAGT+AGG | - | chr1_1:18047646-18047665 | None:intergenic | 35.0% | |
| CTACTTGTTTCATTCACACA+TGG | + | chr1_1:18047644-18047663 | Msa0011980:intron | 35.0% | |
| AAAAGTGATGCAACCTTTGT+TGG | - | chr1_1:18047683-18047702 | None:intergenic | 35.0% | |
| CAGGAATTTGACTCTTCTTA+TGG | + | chr1_1:18048141-18048160 | Msa0011980:intron | 35.0% | |
| ! | TGTGTACTTTTCCATCGATA+AGG | + | chr1_1:18048230-18048249 | Msa0011980:CDS | 35.0% |
| AAGGATATGAACCTTATCGA+TGG | - | chr1_1:18048244-18048263 | None:intergenic | 35.0% | |
| GGATGCATAACTTATAGTTG+TGG | - | chr1_1:18048309-18048328 | None:intergenic | 35.0% | |
| ! | TGGAAAGCATGTTTCTGCAA+AGG | - | chr1_1:18045687-18045706 | None:intergenic | 40.0% |
| TAGCAGGCAAAGAATCAAGA+TGG | - | chr1_1:18045722-18045741 | None:intergenic | 40.0% | |
| AGGCCGAAAATCAATTGTAG+AGG | - | chr1_1:18046037-18046056 | None:intergenic | 40.0% | |
| CTCCCAAATTAGTTGGTCAT+TGG | - | chr1_1:18046243-18046262 | None:intergenic | 40.0% | |
| TAATTGGGTCTCTTAGTGGA+CGG | - | chr1_1:18046276-18046295 | None:intergenic | 40.0% | |
| GCTTTAATTGGGTCTCTTAG+TGG | - | chr1_1:18046280-18046299 | None:intergenic | 40.0% | |
| AGCCAAACCAAAGTTCTGTA+TGG | + | chr1_1:18046297-18046316 | Msa0011980:intron | 40.0% | |
| GTCCATACAGAACTTTGGTT+TGG | - | chr1_1:18046302-18046321 | None:intergenic | 40.0% | |
| TAGCCCACATAAATTGACAC+TGG | + | chr1_1:18046322-18046341 | Msa0011980:intron | 40.0% | |
| AGCCCACATAAATTGACACT+GGG | + | chr1_1:18046323-18046342 | Msa0011980:intron | 40.0% | |
| CTCCCAGTGTCAATTTATGT+GGG | - | chr1_1:18046328-18046347 | None:intergenic | 40.0% | |
| TCTCCCAGTGTCAATTTATG+TGG | - | chr1_1:18046329-18046348 | None:intergenic | 40.0% | |
| CTTGGAGTGTGTTTCTTTGA+AGG | - | chr1_1:18046366-18046385 | None:intergenic | 40.0% | |
| CTTCAAAGAAACACACTCCA+AGG | + | chr1_1:18046364-18046383 | Msa0011980:intron | 40.0% | |
| ! | TGGTATTGGGTACTAATGCT+AGG | + | chr1_1:18046438-18046457 | Msa0011980:intron | 40.0% |
| GGTACTAATGCTAGGTCAAT+TGG | + | chr1_1:18046446-18046465 | Msa0011980:intron | 40.0% | |
| ATGCATGTTTGGTATCATGG+TGG | + | chr1_1:18046526-18046545 | Msa0011980:intron | 40.0% | |
| TGCATGTTTGGTATCATGGT+GGG | + | chr1_1:18046527-18046546 | Msa0011980:intron | 40.0% | |
| GTCTCACATCACCTATGAAT+AGG | + | chr1_1:18046748-18046767 | Msa0011980:intron | 40.0% | |
| !!! | TAAAGTTTTGGGTGGAGATG+TGG | + | chr1_1:18046817-18046836 | Msa0011980:intron | 40.0% |
| AGGGACAGCTATATATTTGC+AGG | + | chr1_1:18047477-18047496 | Msa0011980:intron | 40.0% | |
| TGAAACAAGTAGGTTTGCAC+AGG | - | chr1_1:18047636-18047655 | None:intergenic | 40.0% | |
| !!! | AAGAATTTTGCTGGTCTTGC+AGG | + | chr1_1:18048122-18048141 | Msa0011980:intron | 40.0% |
| !! | TGCATCGTTGGTACTAGTTT+TGG | + | chr1_1:18048177-18048196 | Msa0011980:CDS | 40.0% |
| TCCTATGTTACTCACTCTGT+TGG | + | chr1_1:18048201-18048220 | Msa0011980:CDS | 40.0% | |
| ACCAACAGAGTGAGTAACAT+AGG | - | chr1_1:18048205-18048224 | None:intergenic | 40.0% | |
| TATGTTACTCACTCTGTTGG+TGG | + | chr1_1:18048204-18048223 | Msa0011980:CDS | 40.0% | |
| AGGTTCATATCCTTCTCTTC+AGG | + | chr1_1:18048250-18048269 | Msa0011980:CDS | 40.0% | |
| GGAAGTTATGAATGGTCCAA+TGG | - | chr1_1:18048288-18048307 | None:intergenic | 40.0% | |
| CAAGATGGTCACGTGCAAAT+TGG | - | chr1_1:18045707-18045726 | None:intergenic | 45.0% | |
| TTACTGTCAGGCTTCTTAGC+AGG | - | chr1_1:18045738-18045757 | None:intergenic | 45.0% | |
| GAAGCCTGACAGTAAACACT+TGG | + | chr1_1:18045743-18045762 | Msa0011980:CDS | 45.0% | |
| AGTGCCAAGTGTTTACTGTC+AGG | - | chr1_1:18045750-18045769 | None:intergenic | 45.0% | |
| !! | GACTGGTCTCCCAAATTAGT+TGG | - | chr1_1:18046250-18046269 | None:intergenic | 45.0% |
| ! | GGCTAGTCCATACAGAACTT+TGG | - | chr1_1:18046307-18046326 | None:intergenic | 45.0% |
| ATCATGACTTTGCAACACGG+TGG | - | chr1_1:18046573-18046592 | None:intergenic | 45.0% | |
| ACCGTGTTGCAAAGTCATGA+TGG | + | chr1_1:18046572-18046591 | Msa0011980:intron | 45.0% | |
| GCCATCATGACTTTGCAACA+CGG | - | chr1_1:18046576-18046595 | None:intergenic | 45.0% | |
| !! | GCTTGAACTTGTTGGGATTC+AGG | + | chr1_1:18046712-18046731 | Msa0011980:intron | 45.0% |
| GGAAAAAGAAAGAGGAGAGC+AGG | + | chr1_1:18047129-18047148 | Msa0011980:intron | 45.0% | |
| !!! | AGTAATTAATTTTATTTTTT+AGG | + | chr1_1:18046915-18046934 | Msa0011980:intron | 5.0% |
| CTTGGCACTCTCCCTTAAGA+AGG | + | chr1_1:18045761-18045780 | Msa0011980:CDS | 50.0% | |
| TGTTGGGATTCAGGTGTGAG+TGG | + | chr1_1:18046721-18046740 | Msa0011980:intron | 50.0% | |
| ATGCTCAGGACCACAACAGA+GGG | - | chr1_1:18046848-18046867 | None:intergenic | 50.0% | |
| AATGCTCAGGACCACAACAG+AGG | - | chr1_1:18046849-18046868 | None:intergenic | 50.0% | |
| ACTCTTCTTATGGCCCAGCT+TGG | + | chr1_1:18048151-18048170 | Msa0011980:CDS | 50.0% | |
| CAACAGCTGTCCTGAAGAGA+AGG | - | chr1_1:18048263-18048282 | None:intergenic | 50.0% | |
| ! | CTCTTAGTGGACGGTGAGAC+TGG | - | chr1_1:18046267-18046286 | None:intergenic | 55.0% |
| GGAACAACGGGTCAATGCTC+AGG | - | chr1_1:18046862-18046881 | None:intergenic | 55.0% | |
| !! | TGAGAGAGCGTCGGGAACAA+CGG | - | chr1_1:18046875-18046894 | None:intergenic | 55.0% |
| !! | GTTGGGTTTGAGAGAGCGTC+GGG | - | chr1_1:18046883-18046902 | None:intergenic | 55.0% |
| ! | CGTTGGGTTTGAGAGAGCGT+CGG | - | chr1_1:18046884-18046903 | None:intergenic | 55.0% |
| CGACGCTCTCTCAAACCCAA+CGG | + | chr1_1:18046882-18046901 | Msa0011980:intron | 55.0% | |
| CAACGATGCAGTGCCAAGCT+GGG | - | chr1_1:18048167-18048186 | None:intergenic | 55.0% | |
| CAGGACAGCTGTTGCACCAT+TGG | + | chr1_1:18048269-18048288 | Msa0011980:CDS | 55.0% | |
| CTCAGGACCACAACAGAGGG+AGG | - | chr1_1:18046845-18046864 | None:intergenic | 60.0% | |
| !! | GAGAGAGCGTCGGGAACAAC+GGG | - | chr1_1:18046874-18046893 | None:intergenic | 60.0% |
| CCAACGATGCAGTGCCAAGC+TGG | - | chr1_1:18048168-18048187 | None:intergenic | 60.0% | |
| CCAGCTTGGCACTGCATCGT+TGG | + | chr1_1:18048165-18048184 | Msa0011980:CDS | 60.0% | |
| TGTGGCGCCTCCCTCTGTTG+TGG | + | chr1_1:18046835-18046854 | Msa0011980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18045579 | 18048497 | 18045579 | ID=Msa0011980;Name=Msa0011980 |
| chr1_1 | mRNA | 18045579 | 18048497 | 18045579 | ID=Msa0011980-mRNA-1;Parent=Msa0011980;Name=Msa0011980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=37|1|1|1|1|1|2|119|133 |
| chr1_1 | exon | 18045579 | 18045782 | 18045579 | ID=Msa0011980-mRNA-1:exon:6554;Parent=Msa0011980-mRNA-1 |
| chr1_1 | exon | 18048144 | 18048497 | 18048144 | ID=Msa0011980-mRNA-1:exon:6555;Parent=Msa0011980-mRNA-1 |
| chr1_1 | five_prime_UTR | 18045579 | 18045615 | 18045579 | ID=Msa0011980-mRNA-1:five_prime_utr;Parent=Msa0011980-mRNA-1 |
| chr1_1 | CDS | 18045616 | 18045782 | 18045616 | ID=Msa0011980-mRNA-1:cds;Parent=Msa0011980-mRNA-1 |
| chr1_1 | CDS | 18048144 | 18048378 | 18048144 | ID=Msa0011980-mRNA-1:cds;Parent=Msa0011980-mRNA-1 |
| chr1_1 | three_prime_UTR | 18048379 | 18048497 | 18048379 | ID=Msa0011980-mRNA-1:three_prime_utr;Parent=Msa0011980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
