AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105650 MtrunA17_Chr1g0160981 82.400 125 20 2 1 124 1 124 9.22e-68 201
Msa0105650 MtrunA17_Chr8g0391451 68.027 147 33 3 1 147 16 148 2.70e-65 195
Msa0105650 MtrunA17_Chr4g0059791 60.417 96 35 2 51 145 214 307 1.23e-31 114
Msa0105650 MtrunA17_Chr4g0063491 56.180 89 37 1 53 141 154 240 3.95e-29 106
Msa0105650 MtrunA17_Chr8g0360861 43.529 85 46 1 59 143 12 94 2.99e-19 77.4
Msa0105650 MtrunA17_Chr2g0331651 37.778 90 54 1 49 138 2 89 1.35e-18 75.5
Msa0105650 MtrunA17_Chr4g0067531 42.045 88 47 1 53 140 47 130 3.51e-18 75.5
Msa0105650 MtrunA17_Chr6g0485891 37.209 86 52 1 55 140 42 125 1.21e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105650 AT1G23220.1 59.589 146 41 3 1 146 1 128 9.31e-55 168
Msa0105650 AT5G20110.1 47.656 128 59 3 21 143 81 205 2.77e-35 122
Msa0105650 AT4G27360.1 44.444 90 45 2 59 145 12 99 2.39e-19 77.8
Msa0105650 AT1G52245.1 38.947 95 56 1 49 143 2 94 3.31e-19 77.4
Msa0105650 AT4G15930.1 41.860 86 46 1 55 140 42 123 1.48e-18 76.6
Msa0105650 AT3G16120.2 39.130 92 54 1 49 140 2 91 5.59e-18 74.3
Msa0105650 AT3G16120.1 39.130 92 54 1 49 140 2 91 5.59e-18 74.3

Find 46 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTTGATGCACTTATATT+TGG 0.174564 1_3:+14234907 Msa0105650:three_prime_UTR
CAGGAATTTGACTCTTCTTA+TGG 0.240599 1_3:+14234639 Msa0105650:intron
GAAGAAAAGGGTGTGGGTTT+TGG 0.252025 1_3:+14231936 Msa0105650:five_prime_UTR
TTTAAATGCAAAATTTCTTC+TGG 0.289949 1_3:+14234954 Msa0105650:three_prime_UTR
TGCATCGTTGGTACTAGTTT+TGG 0.319023 1_3:+14234675 Msa0105650:CDS
CAAGATGGTCACGTGCAAAT+TGG 0.319181 1_3:-14232202 None:intergenic
AGGTTCATATCCTTCTCTTC+AGG 0.345046 1_3:+14234748 Msa0105650:CDS
ACTATAAGTTATGCATCCTT+TGG 0.349909 1_3:+14234809 Msa0105650:three_prime_UTR
TCCAATGCTTTGAGAAGAAA+AGG 0.360632 1_3:+14231923 Msa0105650:five_prime_UTR
GTACAGTGTAATGGAATGAT+AGG 0.385072 1_3:-14231843 None:intergenic
ACAATTTAAGTCCGATCAAT+TGG 0.392194 1_3:-14235018 None:intergenic
AAGTAGAGTAACCTTCTTAA+GGG 0.392735 1_3:-14232270 None:intergenic
AAAGTAGAGTAACCTTCTTA+AGG 0.404061 1_3:-14232271 None:intergenic
TTCAGTTTCTACATATCATC+TGG 0.405156 1_3:-14234855 None:intergenic
CAGGACAGCTGTTGCACCAT+TGG 0.413092 1_3:+14234767 Msa0105650:CDS
CTATAAGTTATGCATCCTTT+GGG 0.425627 1_3:+14234810 Msa0105650:three_prime_UTR
CCAACGATGCAGTGCCAAGC+TGG 0.427189 1_3:-14234663 None:intergenic
TTGAAAGAAGAGAGAGAGAA+TGG 0.435993 1_3:-14231879 None:intergenic
ATATACGCATTTATGTTGTT+CGG 0.438488 1_3:+14234988 Msa0105650:three_prime_UTR
TATGTTACTCACTCTGTTGG+TGG 0.459409 1_3:+14234702 Msa0105650:CDS
CCAGCTTGGCACTGCATCGT+TGG 0.460463 1_3:+14234663 Msa0105650:CDS
TTACTGTCAGGCTTCTTAGC+AGG 0.476393 1_3:-14232233 None:intergenic
AGTGCCAAGTGTTTACTGTC+AGG 0.499308 1_3:-14232245 None:intergenic
ACTCTTCTTATGGCCCAGCT+TGG 0.503560 1_3:+14234649 Msa0105650:CDS
CAACGATGCAGTGCCAAGCT+GGG 0.507803 1_3:-14234662 None:intergenic
TCCTATGTTACTCACTCTGT+TGG 0.508362 1_3:+14234699 Msa0105650:CDS
GAGTAAAATGTACAGTGTAA+TGG 0.514020 1_3:-14231852 None:intergenic
ATAGTTGTGGAAGTTATGAA+TGG 0.517223 1_3:-14234791 None:intergenic
CCAATGCTTTGAGAAGAAAA+GGG 0.519134 1_3:+14231924 Msa0105650:five_prime_UTR
CTTGGCACTCTCCCTTAAGA+AGG 0.524847 1_3:+14232259 Msa0105650:CDS
CTTTGAGAAGAAAAGGGTGT+GGG 0.533877 1_3:+14231930 Msa0105650:five_prime_UTR
TGGAAAGCATGTTTCTGCAA+AGG 0.538030 1_3:-14232182 None:intergenic
TCGGATTAGCACCAATTGAT+CGG 0.546034 1_3:+14235007 Msa0105650:three_prime_UTR
TCACATGGAAGAAGCAGAGA+AGG 0.550248 1_3:+14231992 Msa0105650:exon
CAGAGAAGGAGTTAGAGAGA+AGG 0.557565 1_3:+14232006 Msa0105650:CDS
TGAAAGAAGAGAGAGAGAAT+GGG 0.560655 1_3:-14231878 None:intergenic
CAACAGCTGTCCTGAAGAGA+AGG 0.560687 1_3:-14234758 None:intergenic
ACCAACAGAGTGAGTAACAT+AGG 0.582734 1_3:-14234700 None:intergenic
GGATGCATAACTTATAGTTG+TGG 0.590622 1_3:-14234804 None:intergenic
AAGGATATGAACCTTATCGA+TGG 0.591339 1_3:-14234739 None:intergenic
CTTTGAAATTAATTTCCCAA+AGG 0.603603 1_3:-14234825 None:intergenic
GCTTTGAGAAGAAAAGGGTG+TGG 0.608092 1_3:+14231929 Msa0105650:five_prime_UTR
TAGCAGGCAAAGAATCAAGA+TGG 0.616352 1_3:-14232217 None:intergenic
GAAGCCTGACAGTAAACACT+TGG 0.632851 1_3:+14232241 Msa0105650:CDS
GGAAGTTATGAATGGTCCAA+TGG 0.665369 1_3:-14234783 None:intergenic
GTGAGTTAAGTAACATCACA+TGG 0.671205 1_3:+14231977 Msa0105650:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATGTTTTTATGTT+TGG + chr1_3:14232397-14232416 Msa0105650:intron 10.0%
!!! AAATTTGTTCATATTAAAAT+TGG - chr1_3:14233952-14233971 None:intergenic 10.0%
!!! TAATTGAAACTAGAATTTTA+AGG + chr1_3:14232506-14232525 Msa0105650:intron 15.0%
!! AACAAAAAATCATATATTTG+CGG - chr1_3:14233745-14233764 None:intergenic 15.0%
!! AAATTTATTCACATTGAAAT+TGG + chr1_3:14233864-14233883 Msa0105650:intron 15.0%
!! TGTATTATACAAAAAAATCT+AGG - chr1_3:14234052-14234071 None:intergenic 15.0%
!! TTAATGAATTATACTATCTT+TGG + chr1_3:14234471-14234490 Msa0105650:intron 15.0%
!! TAATGAATTATACTATCTTT+GGG + chr1_3:14234472-14234491 Msa0105650:intron 15.0%
!!! TAGAGTTGATTTTAAATGTT+TGG + chr1_3:14232457-14232476 Msa0105650:intron 20.0%
!!! TCAAAATCAATTTTTGTCAT+AGG + chr1_3:14232617-14232636 Msa0105650:intron 20.0%
!!! AACATAGTTTTTTGAAAACT+TGG + chr1_3:14232709-14232728 Msa0105650:intron 20.0%
!!! ATATGCAAATTTTCGATATT+TGG + chr1_3:14232918-14232937 Msa0105650:intron 20.0%
!!! AAATTTTCGATATTTGGTAT+TGG + chr1_3:14232924-14232943 Msa0105650:intron 20.0%
!!! AATTTTCGATATTTGGTATT+GGG + chr1_3:14232925-14232944 Msa0105650:intron 20.0%
!!! TATCTAATGTCTTAAAGTTT+TGG + chr1_3:14233303-14233322 Msa0105650:intron 20.0%
!!! ATCTAATGTCTTAAAGTTTT+GGG + chr1_3:14233304-14233323 Msa0105650:intron 20.0%
!! TCCTTAAAACATGTTATAAA+AGG - chr1_3:14233610-14233629 None:intergenic 20.0%
!! TTTAATCTTTACTAAAAGGA+AGG + chr1_3:14233702-14233721 Msa0105650:intron 20.0%
!!! ATGTATCAATTTTTTGCTTT+TGG + chr1_3:14233816-14233835 Msa0105650:intron 20.0%
!!! TTAATATGAACAAATTTTGC+AGG + chr1_3:14233955-14233974 Msa0105650:intron 20.0%
!!! TAATATGAACAAATTTTGCA+GGG + chr1_3:14233956-14233975 Msa0105650:intron 20.0%
!!! TCTATGATCACTTTAATTTT+AGG - chr1_3:14234019-14234038 None:intergenic 20.0%
!! TTACTTCATACTTTAATACA+TGG - chr1_3:14234223-14234242 None:intergenic 20.0%
!! AAATCAATAAATAAGTGTCT+TGG + chr1_3:14234281-14234300 Msa0105650:intron 20.0%
!! TTTCAATGTTCATTTCTAAA+TGG + chr1_3:14234573-14234592 Msa0105650:intron 20.0%
!! TTTAAATGCAAAATTTCTTC+TGG + chr1_3:14234954-14234973 Msa0105650:three_prime_UTR 20.0%
!!! TTTTTTCGAAAATCTGTTTC+TGG + chr1_3:14232300-14232319 Msa0105650:intron 25.0%
!!! TTTTTCGAAAATCTGTTTCT+GGG + chr1_3:14232301-14232320 Msa0105650:intron 25.0%
! TTTATGTTTGGTTACACATT+TGG + chr1_3:14232409-14232428 Msa0105650:intron 25.0%
! TGTTTGAGTATATTCTTGTA+AGG - chr1_3:14232557-14232576 None:intergenic 25.0%
! GTTATCCTAATTAAAGGTTT+GGG - chr1_3:14232891-14232910 None:intergenic 25.0%
!! GATTTGGTTATCCTAATTAA+AGG - chr1_3:14232897-14232916 None:intergenic 25.0%
! CGAAAATTTGCATATAGATT+TGG - chr1_3:14232913-14232932 None:intergenic 25.0%
!! TCAACATTTTACCTATTCAT+AGG - chr1_3:14233260-14233279 None:intergenic 25.0%
! AGAAAGAATATGTAGACTAT+AGG - chr1_3:14233557-14233576 None:intergenic 25.0%
! ATAGTCTACATATTCTTTCT+AGG + chr1_3:14233557-14233576 Msa0105650:intron 25.0%
!! GCCTTTTATAACATGTTTTA+AGG + chr1_3:14233606-14233625 Msa0105650:intron 25.0%
!!! TGTTTTAAGGAAAAAGAAAG+AGG + chr1_3:14233619-14233638 Msa0105650:intron 25.0%
! AAATAAGACCAATATAAAGC+AGG - chr1_3:14233676-14233695 None:intergenic 25.0%
!! CCTTTTAGTAAAGATTAAAG+AGG - chr1_3:14233701-14233720 None:intergenic 25.0%
! CCTCTTTAATCTTTACTAAA+AGG + chr1_3:14233698-14233717 Msa0105650:intron 25.0%
!!! CAAAAGAAAGATTTTTTTGC+AGG - chr1_3:14233775-14233794 None:intergenic 25.0%
! GCAGAAAATAAAACAAAACA+AGG - chr1_3:14233843-14233862 None:intergenic 25.0%
!!! TCATTTTAGTCCTTATTTTG+AGG - chr1_3:14233917-14233936 None:intergenic 25.0%
! TATGTTTATTAGCTGTATGT+TGG + chr1_3:14234253-14234272 Msa0105650:intron 25.0%
!!! ATAACTTTGATAGTGAAATG+AGG - chr1_3:14234374-14234393 None:intergenic 25.0%
! ATACATTTAGCAAAAGACAA+AGG - chr1_3:14234439-14234458 None:intergenic 25.0%
! TTCTAAATGGAAAATGACTT+TGG + chr1_3:14234586-14234605 Msa0105650:intron 25.0%
!! AACAATAGTAAGAATTTTGC+TGG + chr1_3:14234611-14234630 Msa0105650:intron 25.0%
!!! CTTTGAAATTAATTTCCCAA+AGG - chr1_3:14234828-14234847 None:intergenic 25.0%
! GTATTTGATGCACTTATATT+TGG + chr1_3:14234907-14234926 Msa0105650:three_prime_UTR 25.0%
!!! TATTTGGATTTTTTTGTCTG+TGG + chr1_3:14234923-14234942 Msa0105650:three_prime_UTR 25.0%
! ATATACGCATTTATGTTGTT+CGG + chr1_3:14234988-14235007 Msa0105650:three_prime_UTR 25.0%
GAGTAAAATGTACAGTGTAA+TGG - chr1_3:14231855-14231874 None:intergenic 30.0%
AAGTAGAGTAACCTTCTTAA+GGG - chr1_3:14232273-14232292 None:intergenic 30.0%
AAAGTAGAGTAACCTTCTTA+AGG - chr1_3:14232274-14232293 None:intergenic 30.0%
GAACATAACACAACAAATCA+TGG - chr1_3:14232341-14232360 None:intergenic 30.0%
AATCCAATGACCAACTAATT+TGG + chr1_3:14232737-14232756 Msa0105650:intron 30.0%
ATCCAATGACCAACTAATTT+GGG + chr1_3:14232738-14232757 Msa0105650:intron 30.0%
!! ACTTTGGTTTGGCTTTAATT+GGG - chr1_3:14232791-14232810 None:intergenic 30.0%
!! AACTTTGGTTTGGCTTTAAT+TGG - chr1_3:14232792-14232811 None:intergenic 30.0%
GGTTATCCTAATTAAAGGTT+TGG - chr1_3:14232892-14232911 None:intergenic 30.0%
CATATGAACTAATGCATGTT+TGG + chr1_3:14233015-14233034 Msa0105650:intron 30.0%
AATCAAGCTTAGTGCATATT+CGG - chr1_3:14233130-14233149 None:intergenic 30.0%
!!! TAATGTCTTAAAGTTTTGGG+TGG + chr1_3:14233307-14233326 Msa0105650:intron 30.0%
AAGAAGTAACTGCATACATA+AGG - chr1_3:14233486-14233505 None:intergenic 30.0%
AAAACTTGTAACTAAGAGCA+TGG - chr1_3:14233512-14233531 None:intergenic 30.0%
TAACAGATCCTGCTTTATAT+TGG + chr1_3:14233665-14233684 Msa0105650:intron 30.0%
TACTTGTTTCATTCACACAT+GGG + chr1_3:14234143-14234162 Msa0105650:intron 30.0%
! TTCACACATGGGAATTTTTA+TGG + chr1_3:14234154-14234173 Msa0105650:intron 30.0%
! GAATTTTTATGGTCCAACAA+AGG + chr1_3:14234165-14234184 Msa0105650:intron 30.0%
TGAAACTCTTGTTACACTAA+TGG + chr1_3:14234400-14234419 Msa0105650:intron 30.0%
TTTGATTCTTGCACAATTCT+TGG + chr1_3:14234500-14234519 Msa0105650:intron 30.0%
ATAGTTGTGGAAGTTATGAA+TGG - chr1_3:14234794-14234813 None:intergenic 30.0%
ACTATAAGTTATGCATCCTT+TGG + chr1_3:14234809-14234828 Msa0105650:three_prime_UTR 30.0%
CTATAAGTTATGCATCCTTT+GGG + chr1_3:14234810-14234829 Msa0105650:three_prime_UTR 30.0%
TTCAGTTTCTACATATCATC+TGG - chr1_3:14234858-14234877 None:intergenic 30.0%
! GTACAGTGTAATGGAATGAT+AGG - chr1_3:14231846-14231865 None:intergenic 35.0%
TGAAAGAAGAGAGAGAGAAT+GGG - chr1_3:14231881-14231900 None:intergenic 35.0%
TTGAAAGAAGAGAGAGAGAA+TGG - chr1_3:14231882-14231901 None:intergenic 35.0%
! GGAAACTATTTTGCACACTT+TGG - chr1_3:14231906-14231925 None:intergenic 35.0%
!! TCCAATGCTTTGAGAAGAAA+AGG + chr1_3:14231923-14231942 Msa0105650:five_prime_UTR 35.0%
!! CCAATGCTTTGAGAAGAAAA+GGG + chr1_3:14231924-14231943 Msa0105650:five_prime_UTR 35.0%
GTGAGTTAAGTAACATCACA+TGG + chr1_3:14231977-14231996 Msa0105650:exon 35.0%
!!! TGTTCAACACTGTTTTGACT+TGG + chr1_3:14232356-14232375 Msa0105650:intron 35.0%
ATGTTTGGTTACACATTTGG+AGG + chr1_3:14232412-14232431 Msa0105650:intron 35.0%
TTGCCTCTACAATTGATCTT+CGG + chr1_3:14232531-14232550 Msa0105650:intron 35.0%
! TAATTAAAGGTTTGGGACCT+TGG - chr1_3:14232884-14232903 None:intergenic 35.0%
AAGGTCCCAAACCTTTAATT+AGG + chr1_3:14232883-14232902 Msa0105650:intron 35.0%
GTACTAATGCTAGGTCAATT+GGG + chr1_3:14232947-14232966 Msa0105650:intron 35.0%
CTAATGCATGTTTGGTATCA+TGG + chr1_3:14233023-14233042 Msa0105650:intron 35.0%
!! TTAGTGTTGCTTGAACTTGT+TGG + chr1_3:14233204-14233223 Msa0105650:intron 35.0%
!! TAGTGTTGCTTGAACTTGTT+GGG + chr1_3:14233205-14233224 Msa0105650:intron 35.0%
TTACTATGAGAAGTTCCGTT+GGG - chr1_3:14233398-14233417 None:intergenic 35.0%
ATTACTATGAGAAGTTCCGT+TGG - chr1_3:14233399-14233418 None:intergenic 35.0%
ATAAAGCAGGATCTGTTATG+TGG - chr1_3:14233663-14233682 None:intergenic 35.0%
GATCATAGCTCCTCAAAATA+AGG + chr1_3:14233904-14233923 Msa0105650:intron 35.0%
CATGTGTGAATGAAACAAGT+AGG - chr1_3:14234144-14234163 None:intergenic 35.0%
CTACTTGTTTCATTCACACA+TGG + chr1_3:14234142-14234161 Msa0105650:intron 35.0%
AAAAGTGATGCAACCTTTGT+TGG - chr1_3:14234181-14234200 None:intergenic 35.0%
CAGGAATTTGACTCTTCTTA+TGG + chr1_3:14234639-14234658 Msa0105650:intron 35.0%
! TGTGTACTTTTCCATCGATA+AGG + chr1_3:14234728-14234747 Msa0105650:CDS 35.0%
AAGGATATGAACCTTATCGA+TGG - chr1_3:14234742-14234761 None:intergenic 35.0%
GGATGCATAACTTATAGTTG+TGG - chr1_3:14234807-14234826 None:intergenic 35.0%
! CCCTTTTCTTCTCAAAGCAT+TGG - chr1_3:14231927-14231946 None:intergenic 40.0%
! CTTTGAGAAGAAAAGGGTGT+GGG + chr1_3:14231930-14231949 Msa0105650:five_prime_UTR 40.0%
! TGGAAAGCATGTTTCTGCAA+AGG - chr1_3:14232185-14232204 None:intergenic 40.0%
TAGCAGGCAAAGAATCAAGA+TGG - chr1_3:14232220-14232239 None:intergenic 40.0%
CTCCCAAATTAGTTGGTCAT+TGG - chr1_3:14232743-14232762 None:intergenic 40.0%
TAATTGGGTCTCTTAGTGGA+CGG - chr1_3:14232776-14232795 None:intergenic 40.0%
GCTTTAATTGGGTCTCTTAG+TGG - chr1_3:14232780-14232799 None:intergenic 40.0%
AGCCAAACCAAAGTTCTGTA+TGG + chr1_3:14232797-14232816 Msa0105650:intron 40.0%
GTCCATACAGAACTTTGGTT+TGG - chr1_3:14232802-14232821 None:intergenic 40.0%
TAGCCCACATAAATTGACAC+TGG + chr1_3:14232822-14232841 Msa0105650:intron 40.0%
AGCCCACATAAATTGACACT+GGG + chr1_3:14232823-14232842 Msa0105650:intron 40.0%
CTCCCAGTGTCAATTTATGT+GGG - chr1_3:14232828-14232847 None:intergenic 40.0%
TCTCCCAGTGTCAATTTATG+TGG - chr1_3:14232829-14232848 None:intergenic 40.0%
CTTGGAGTGTGTTTCTTTGA+AGG - chr1_3:14232866-14232885 None:intergenic 40.0%
CTTCAAAGAAACACACTCCA+AGG + chr1_3:14232864-14232883 Msa0105650:intron 40.0%
! TGGTATTGGGTACTAATGCT+AGG + chr1_3:14232938-14232957 Msa0105650:intron 40.0%
GGTACTAATGCTAGGTCAAT+TGG + chr1_3:14232946-14232965 Msa0105650:intron 40.0%
ATGCATGTTTGGTATCATGG+TGG + chr1_3:14233026-14233045 Msa0105650:intron 40.0%
TGCATGTTTGGTATCATGGT+GGG + chr1_3:14233027-14233046 Msa0105650:intron 40.0%
GTCTCACATCACCTATGAAT+AGG + chr1_3:14233246-14233265 Msa0105650:intron 40.0%
!!! TAAAGTTTTGGGTGGAGATG+TGG + chr1_3:14233315-14233334 Msa0105650:intron 40.0%
AGGGACTGCTATATATTTGC+AGG + chr1_3:14233975-14233994 Msa0105650:intron 40.0%
TGAAACAAGTAGGTTTGCAC+AGG - chr1_3:14234134-14234153 None:intergenic 40.0%
!!! AAGAATTTTGCTGGTCTTGC+AGG + chr1_3:14234620-14234639 Msa0105650:intron 40.0%
!! TGCATCGTTGGTACTAGTTT+TGG + chr1_3:14234675-14234694 Msa0105650:CDS 40.0%
TCCTATGTTACTCACTCTGT+TGG + chr1_3:14234699-14234718 Msa0105650:CDS 40.0%
ACCAACAGAGTGAGTAACAT+AGG - chr1_3:14234703-14234722 None:intergenic 40.0%
TATGTTACTCACTCTGTTGG+TGG + chr1_3:14234702-14234721 Msa0105650:CDS 40.0%
AGGTTCATATCCTTCTCTTC+AGG + chr1_3:14234748-14234767 Msa0105650:CDS 40.0%
GGAAGTTATGAATGGTCCAA+TGG - chr1_3:14234786-14234805 None:intergenic 40.0%
!! TCGGATTAGCACCAATTGAT+CGG + chr1_3:14235007-14235026 Msa0105650:three_prime_UTR 40.0%
!! GCTTTGAGAAGAAAAGGGTG+TGG + chr1_3:14231929-14231948 Msa0105650:five_prime_UTR 45.0%
!! GAAGAAAAGGGTGTGGGTTT+TGG + chr1_3:14231936-14231955 Msa0105650:five_prime_UTR 45.0%
TCACATGGAAGAAGCAGAGA+AGG + chr1_3:14231992-14232011 Msa0105650:exon 45.0%
CAGAGAAGGAGTTAGAGAGA+AGG + chr1_3:14232006-14232025 Msa0105650:CDS 45.0%
CAAGATGGTCACGTGCAAAT+TGG - chr1_3:14232205-14232224 None:intergenic 45.0%
TTACTGTCAGGCTTCTTAGC+AGG - chr1_3:14232236-14232255 None:intergenic 45.0%
GAAGCCTGACAGTAAACACT+TGG + chr1_3:14232241-14232260 Msa0105650:CDS 45.0%
AGTGCCAAGTGTTTACTGTC+AGG - chr1_3:14232248-14232267 None:intergenic 45.0%
AGGCCGAAGATCAATTGTAG+AGG - chr1_3:14232537-14232556 None:intergenic 45.0%
!! GACTGGTCTCCCAAATTAGT+TGG - chr1_3:14232750-14232769 None:intergenic 45.0%
! GGCTAGTCCATACAGAACTT+TGG - chr1_3:14232807-14232826 None:intergenic 45.0%
ATCATGACTTTGCAACACGG+TGG - chr1_3:14233073-14233092 None:intergenic 45.0%
ACCGTGTTGCAAAGTCATGA+TGG + chr1_3:14233072-14233091 Msa0105650:intron 45.0%
GCCATCATGACTTTGCAACA+CGG - chr1_3:14233076-14233095 None:intergenic 45.0%
CTTGTTGGGATTCAAGTGAG+TGG + chr1_3:14233219-14233238 Msa0105650:intron 45.0%
GGAAAAAGAAAGAGGAGAGC+AGG + chr1_3:14233627-14233646 Msa0105650:intron 45.0%
!!! AGTAATTAATTTTATTTTTT+AGG + chr1_3:14233413-14233432 Msa0105650:intron 5.0%
CTTGGCACTCTCCCTTAAGA+AGG + chr1_3:14232259-14232278 Msa0105650:CDS 50.0%
ATGCTCAGGACCACAACAGA+GGG - chr1_3:14233346-14233365 None:intergenic 50.0%
AATGCTCAGGACCACAACAG+AGG - chr1_3:14233347-14233366 None:intergenic 50.0%
ACTCTTCTTATGGCCCAGCT+TGG + chr1_3:14234649-14234668 Msa0105650:CDS 50.0%
CAACAGCTGTCCTGAAGAGA+AGG - chr1_3:14234761-14234780 None:intergenic 50.0%
! CTCTTAGTGGACGGTGAGAC+TGG - chr1_3:14232767-14232786 None:intergenic 55.0%
GGAACAACGGGTCAATGCTC+AGG - chr1_3:14233360-14233379 None:intergenic 55.0%
!! TGAGAGAGCGTCGGGAACAA+CGG - chr1_3:14233373-14233392 None:intergenic 55.0%
!! GTTGGGTTTGAGAGAGCGTC+GGG - chr1_3:14233381-14233400 None:intergenic 55.0%
! CGTTGGGTTTGAGAGAGCGT+CGG - chr1_3:14233382-14233401 None:intergenic 55.0%
CGACGCTCTCTCAAACCCAA+CGG + chr1_3:14233380-14233399 Msa0105650:intron 55.0%
CAACGATGCAGTGCCAAGCT+GGG - chr1_3:14234665-14234684 None:intergenic 55.0%
CAGGACAGCTGTTGCACCAT+TGG + chr1_3:14234767-14234786 Msa0105650:CDS 55.0%
CTCAGGACCACAACAGAGGG+AGG - chr1_3:14233343-14233362 None:intergenic 60.0%
!! GAGAGAGCGTCGGGAACAAC+GGG - chr1_3:14233372-14233391 None:intergenic 60.0%
CCAACGATGCAGTGCCAAGC+TGG - chr1_3:14234666-14234685 None:intergenic 60.0%
CCAGCTTGGCACTGCATCGT+TGG + chr1_3:14234663-14234682 Msa0105650:CDS 60.0%
TGTGGCGCCTCCCTCTGTTG+TGG + chr1_3:14233333-14233352 Msa0105650:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 14231836 14235031 14231836 ID=Msa0105650;Name=Msa0105650
chr1_3 mRNA 14231836 14235031 14231836 ID=Msa0105650-mRNA-1;Parent=Msa0105650;Name=Msa0105650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=160|1|1|1|1|1|2|231|147
chr1_3 exon 14231836 14232280 14231836 ID=Msa0105650-mRNA-1:exon:5571;Parent=Msa0105650-mRNA-1
chr1_3 exon 14234642 14235031 14234642 ID=Msa0105650-mRNA-1:exon:5572;Parent=Msa0105650-mRNA-1
chr1_3 five_prime_UTR 14231836 14231995 14231836 ID=Msa0105650-mRNA-1:five_prime_utr;Parent=Msa0105650-mRNA-1
chr1_3 CDS 14231996 14232280 14231996 ID=Msa0105650-mRNA-1:cds;Parent=Msa0105650-mRNA-1
chr1_3 CDS 14234642 14234800 14234642 ID=Msa0105650-mRNA-1:cds;Parent=Msa0105650-mRNA-1
chr1_3 three_prime_UTR 14234801 14235031 14234801 ID=Msa0105650-mRNA-1:three_prime_utr;Parent=Msa0105650-mRNA-1
Gene Sequence

>Msa0105650

ATGGAAGAAGCAGAGAAGGAGTTAGAGAGAAGGAGTAAGTTTCTAAACAGTTTGATACAGAACAAGAAGAAGAAATCAACAGAACAACAAGAACAAAAACAAGAGAAAGAACAAGAACATGATGATAAAAATAATAATATTAAACTCAAAAACAGCATTCATGTCAAAGCTTGTGACATGTCTCTTCCTTTGCAGAAACATGCTTTCCAATTTGCACGTGACCATCTTGATTCTTTGCCTGCTAAGAAGCCTGACAGTAAACACTTGGCACTCTCCCTTAAGAAGGAATTTGACTCTTCTTATGGCCCAGCTTGGCACTGCATCGTTGGTACTAGTTTTGGTTCCTATGTTACTCACTCTGTTGGTGGTTTTGTGTACTTTTCCATCGATAAGGTTCATATCCTTCTCTTCAGGACAGCTGTTGCACCATTGGACCATTCATAA
Protein sequence

>Msa0105650

MEEAEKELERRSKFLNSLIQNKKKKSTEQQEQKQEKEQEHDDKNNNIKLKNSIHVKACDMSLPLQKHAFQFARDHLDSLPAKKPDSKHLALSLKKEFDSSYGPAWHCIVGTSFGSYVTHSVGGFVYFSIDKVHILLFRTAVAPLDHS*