Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012340 | Msa0386580 | 0.802115 | 6.538460e-49 | -8.615850e-47 |
| Msa0012340 | Msa0708170 | 0.940776 | 1.306960e-100 | -8.615850e-47 |
| Msa0012340 | Msa1026900 | 0.990058 | 7.265354e-181 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012340 | MtrunA17_Chr1g0167871 | 62.762 | 478 | 164 | 6 | 11 | 484 | 219 | 686 | 0.0 | 606 |
| Msa0012340 | MtrunA17_Chr2g0304851 | 76.316 | 380 | 59 | 3 | 7 | 374 | 5 | 365 | 0.0 | 597 |
| Msa0012340 | MtrunA17_Chr5g0393521 | 53.583 | 321 | 121 | 4 | 241 | 560 | 1 | 294 | 2.23e-111 | 333 |
| Msa0012340 | MtrunA17_Chr7g0231491 | 68.269 | 208 | 63 | 1 | 11 | 215 | 48 | 255 | 3.49e-96 | 293 |
| Msa0012340 | MtrunA17_Chr5g0393531 | 62.679 | 209 | 65 | 3 | 11 | 216 | 14 | 212 | 1.20e-84 | 262 |
| Msa0012340 | MtrunA17_Chr7g0223511 | 63.507 | 211 | 43 | 4 | 5 | 203 | 22 | 210 | 8.45e-83 | 258 |
| Msa0012340 | MtrunA17_Chr5g0417421 | 63.102 | 187 | 64 | 2 | 280 | 466 | 108 | 289 | 4.66e-78 | 248 |
| Msa0012340 | MtrunA17_Chr5g0417421 | 64.211 | 95 | 24 | 2 | 109 | 203 | 18 | 102 | 5.64e-31 | 122 |
| Msa0012340 | MtrunA17_Chr5g0420451 | 59.898 | 197 | 63 | 2 | 10 | 203 | 14 | 197 | 9.50e-75 | 236 |
| Msa0012340 | MtrunA17_Chr8g0347361 | 69.048 | 168 | 38 | 3 | 5 | 160 | 9 | 174 | 3.52e-72 | 229 |
| Msa0012340 | MtrunA17_Chr4g0026601 | 67.974 | 153 | 41 | 2 | 19 | 168 | 35 | 182 | 2.79e-62 | 202 |
| Msa0012340 | MtrunA17_Chr6g0462951 | 63.043 | 138 | 51 | 0 | 76 | 213 | 2 | 139 | 6.77e-62 | 200 |
| Msa0012340 | MtrunA17_Chr8g0372151 | 44.610 | 269 | 46 | 4 | 7 | 266 | 6 | 180 | 1.70e-59 | 196 |
| Msa0012340 | MtrunA17_Chr4g0044661 | 30.342 | 468 | 251 | 12 | 12 | 467 | 21 | 425 | 2.21e-57 | 199 |
| Msa0012340 | MtrunA17_Chr6g0481111 | 68.613 | 137 | 30 | 2 | 7 | 130 | 1 | 137 | 6.99e-55 | 181 |
| Msa0012340 | MtrunA17_Chr1g0172341 | 66.667 | 114 | 26 | 2 | 5 | 106 | 1 | 114 | 3.72e-42 | 147 |
| Msa0012340 | MtrunA17_Chr5g0393801 | 58.654 | 104 | 31 | 2 | 7 | 98 | 1 | 104 | 2.71e-33 | 122 |
| Msa0012340 | MtrunA17_Chr7g0234461 | 61.458 | 96 | 34 | 1 | 37 | 129 | 1 | 96 | 3.29e-33 | 122 |
| Msa0012340 | MtrunA17_Chr5g0421991 | 33.981 | 206 | 130 | 3 | 241 | 445 | 1 | 201 | 3.81e-28 | 114 |
| Msa0012340 | MtrunA17_Chr1g0148611 | 37.576 | 165 | 95 | 5 | 44 | 203 | 2 | 163 | 4.32e-23 | 96.3 |
| Msa0012340 | MtrunA17_Chr1g0171051 | 31.604 | 212 | 106 | 7 | 12 | 184 | 63 | 274 | 4.67e-22 | 97.8 |
| Msa0012340 | MtrunA17_Chr6g0453011 | 57.447 | 94 | 7 | 3 | 3 | 63 | 27 | 120 | 2.59e-21 | 89.7 |
| Msa0012340 | MtrunA17_Chr7g0231501 | 50.000 | 78 | 39 | 0 | 199 | 276 | 2 | 79 | 9.21e-21 | 86.7 |
| Msa0012340 | MtrunA17_Chr8g0363071 | 38.028 | 142 | 82 | 4 | 61 | 197 | 18 | 158 | 6.31e-20 | 87.0 |
| Msa0012340 | MtrunA17_Chr1g0206481 | 27.547 | 265 | 173 | 8 | 16 | 269 | 19 | 275 | 6.75e-19 | 87.4 |
| Msa0012340 | MtrunA17_Chr2g0278111 | 25.623 | 281 | 184 | 8 | 16 | 282 | 19 | 288 | 2.86e-17 | 83.2 |
| Msa0012340 | MtrunA17_Chr2g0280031 | 28.070 | 228 | 147 | 6 | 19 | 230 | 3 | 229 | 2.91e-17 | 82.0 |
| Msa0012340 | MtrunA17_Chr5g0411141 | 25.623 | 281 | 184 | 8 | 16 | 282 | 20 | 289 | 3.03e-17 | 83.2 |
| Msa0012340 | MtrunA17_Chr5g0423441 | 26.667 | 225 | 151 | 6 | 16 | 230 | 19 | 239 | 7.79e-16 | 77.8 |
| Msa0012340 | MtrunA17_Chr5g0426561 | 70.833 | 48 | 5 | 1 | 7 | 45 | 1 | 48 | 1.16e-14 | 68.6 |
| Msa0012340 | MtrunA17_Chr5g0421841 | 28.718 | 195 | 125 | 6 | 16 | 200 | 19 | 209 | 1.58e-14 | 72.8 |
| Msa0012340 | MtrunA17_Chr6g0469931 | 29.694 | 229 | 146 | 8 | 13 | 232 | 18 | 240 | 3.16e-14 | 75.9 |
| Msa0012340 | MtrunA17_Chr6g0464321 | 69.767 | 43 | 4 | 1 | 7 | 40 | 1 | 43 | 9.88e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012340 | AT2G05642.1 | 23.761 | 585 | 335 | 25 | 16 | 560 | 19 | 532 | 1.13e-16 | 83.6 |
| Msa0012340 | AT1G52950.1 | 22.330 | 412 | 282 | 14 | 9 | 398 | 14 | 409 | 2.29e-15 | 79.7 |
Find 127 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATTCTGTTGCTGAAAA+AGG | 0.130039 | 1_1:-18533199 | Msa0012340:CDS |
| TGGTCTTTCCATTTCCATTT+TGG | 0.206495 | 1_1:+18535703 | None:intergenic |
| TTCAGCCAAGTCATCCATTA+TGG | 0.207746 | 1_1:+18533785 | None:intergenic |
| CCCTGAGATCAATCTCTTTC+GGG | 0.209111 | 1_1:-18534630 | Msa0012340:CDS |
| CCCGACACAATCTCAGAAAA+TGG | 0.223390 | 1_1:+18535234 | None:intergenic |
| CTGAGATTGTGTCGGGAAAA+TGG | 0.226545 | 1_1:-18535227 | Msa0012340:CDS |
| TCACAAACTAGAAAGATTTC+TGG | 0.240702 | 1_1:-18535649 | Msa0012340:intron |
| AGCCACTGATTGGTGTAATC+TGG | 0.275824 | 1_1:+18533281 | None:intergenic |
| TAAGTATTTGATACACTTAA+TGG | 0.280049 | 1_1:+18534686 | None:intergenic |
| CTTTGAATTTCCTCCCATAA+TGG | 0.288516 | 1_1:-18533799 | Msa0012340:CDS |
| CCTGAGACAGGGGCAGAATC+TGG | 0.316365 | 1_1:+18534411 | None:intergenic |
| TTGTCCCCTTTAGCAATCTT+TGG | 0.325042 | 1_1:+18534195 | None:intergenic |
| TCATTAGAAGCGGTTGGATT+AGG | 0.329939 | 1_1:+18533474 | None:intergenic |
| AAGCTTTCATTGACCGAGTC+AGG | 0.334605 | 1_1:-18533689 | Msa0012340:CDS |
| TCCCTGAGATCAATCTCTTT+CGG | 0.336045 | 1_1:-18534631 | Msa0012340:CDS |
| ATCACAAGTATAAATTGATA+TGG | 0.344326 | 1_1:-18535323 | Msa0012340:CDS |
| ATCCAGTGTACACAGTCTTA+TGG | 0.354953 | 1_1:-18534476 | Msa0012340:CDS |
| TTGAACTTAATGCTAGGGTT+AGG | 0.355302 | 1_1:+18535258 | None:intergenic |
| TAAGGATGGCAAGGAGCATT+TGG | 0.363399 | 1_1:-18535588 | Msa0012340:CDS |
| AATAATCATACCACAAGGTT+GGG | 0.368682 | 1_1:+18533657 | None:intergenic |
| CCAGATTCTGCCCCTGTCTC+AGG | 0.375552 | 1_1:-18534411 | Msa0012340:CDS |
| TTGCAGGTGTGATCTCATTA+TGG | 0.379405 | 1_1:+18533104 | None:intergenic |
| CTCAGGGATGTTCTCATTGA+TGG | 0.381168 | 1_1:+18534646 | None:intergenic |
| CGCGAGGTGACTCAGATGTT+AGG | 0.383445 | 1_1:-18533966 | Msa0012340:CDS |
| CAAACTACTTACAGTTGAAA+TGG | 0.384017 | 1_1:+18533443 | None:intergenic |
| GACATCAGCTGCTCATCTTT+AGG | 0.385108 | 1_1:+18534509 | None:intergenic |
| GTAATCTGGGTCAAACCATC+AGG | 0.388666 | 1_1:+18533295 | None:intergenic |
| GAAACTAAATGTTCGAGTTA+AGG | 0.394600 | 1_1:-18535627 | Msa0012340:CDS |
| TTAAGGCGCCAAAATGGAAA+TGG | 0.397181 | 1_1:-18535711 | Msa0012340:intron |
| GGACAAATGGACTGTTGTTA+AGG | 0.403910 | 1_1:-18535606 | Msa0012340:CDS |
| ATTCAAGTTGTTATTCCAAC+TGG | 0.408476 | 1_1:-18535444 | Msa0012340:CDS |
| AAGTATTTGATACACTTAAT+GGG | 0.409633 | 1_1:+18534687 | None:intergenic |
| TCAGCCAAGTCATCCATTAT+GGG | 0.420555 | 1_1:+18533786 | None:intergenic |
| CTATGGTCTTTAAGGTCAAA+TGG | 0.421947 | 1_1:-18533758 | Msa0012340:CDS |
| GCATTCTTTAAGCCACTGAT+TGG | 0.425871 | 1_1:+18533271 | None:intergenic |
| AACAGTTCTGTCCATGTCAT+AGG | 0.434723 | 1_1:+18534004 | None:intergenic |
| TTCTGTAAACTGCACTTTGT+GGG | 0.438600 | 1_1:-18534909 | Msa0012340:CDS |
| CGCTACTGTCAGCTGAATGA+AGG | 0.449869 | 1_1:-18535064 | Msa0012340:CDS |
| TCCTCCCATAATGGATGACT+TGG | 0.453063 | 1_1:-18533790 | Msa0012340:CDS |
| TATCATGTTACTGCGGAGTT+GGG | 0.456873 | 1_1:+18533932 | None:intergenic |
| GCAGCTAGATTCTCAATCTC+TGG | 0.459763 | 1_1:+18533522 | None:intergenic |
| TGTTATTCCAACTGGTTACA+AGG | 0.460003 | 1_1:-18535436 | Msa0012340:CDS |
| ACACTGAGACCGAGATTGTC+AGG | 0.464385 | 1_1:-18534143 | Msa0012340:intron |
| TTTAACAAGGATAGGAAAGA+AGG | 0.471359 | 1_1:-18534860 | Msa0012340:CDS |
| AGAAAGACTCTCGCAACTCA+TGG | 0.471366 | 1_1:+18533240 | None:intergenic |
| TCCCGAAAGAGATTGATCTC+AGG | 0.477644 | 1_1:+18534629 | None:intergenic |
| GAATCTGGGAATTAGATAGA+AGG | 0.478851 | 1_1:+18534426 | None:intergenic |
| TGAACTTAATGCTAGGGTTA+GGG | 0.480649 | 1_1:+18535259 | None:intergenic |
| ACATCTTCATTAGAAGCGGT+TGG | 0.481108 | 1_1:+18533468 | None:intergenic |
| GTCAGCTGAATGAAGGGAAT+GGG | 0.483197 | 1_1:-18535057 | Msa0012340:CDS |
| ATCAGTGGCTTAAAGAATGC+TGG | 0.483558 | 1_1:-18533268 | Msa0012340:CDS |
| GTATCATGTTACTGCGGAGT+TGG | 0.488551 | 1_1:+18533931 | None:intergenic |
| ATGTTCGAGTTAAGGACAAA+TGG | 0.490659 | 1_1:-18535619 | Msa0012340:CDS |
| GGGAGGAAATTCAAAGCGAT+TGG | 0.492909 | 1_1:+18533806 | None:intergenic |
| GGTCCTCTTCAGTAGCAACT+TGG | 0.493894 | 1_1:+18534447 | None:intergenic |
| TCTGTTGTATGTTACAAAGA+AGG | 0.495254 | 1_1:-18533714 | Msa0012340:CDS |
| CTGAGACAGGGGCAGAATCT+GGG | 0.495844 | 1_1:+18534412 | None:intergenic |
| AAGTGTCCAAAGATTGCTAA+AGG | 0.496090 | 1_1:-18534201 | Msa0012340:CDS |
| TAATAATCATACCACAAGGT+TGG | 0.496202 | 1_1:+18533656 | None:intergenic |
| AGTGTCCAAAGATTGCTAAA+GGG | 0.496382 | 1_1:-18534200 | Msa0012340:CDS |
| TGCCCATCGTCACATGTGTA+AGG | 0.499698 | 1_1:+18534168 | None:intergenic |
| AAGACTGTGTACACTGGATC+TGG | 0.503556 | 1_1:+18534480 | None:intergenic |
| AATGGCTTGAACTTAATGCT+AGG | 0.510979 | 1_1:+18535252 | None:intergenic |
| GCCACTGATTGGTGTAATCT+GGG | 0.513566 | 1_1:+18533282 | None:intergenic |
| TCAGTTGCAGCCATCTTATG+AGG | 0.515548 | 1_1:+18533148 | None:intergenic |
| CAAGCTGGATAACCTGAGAC+AGG | 0.518189 | 1_1:+18534399 | None:intergenic |
| AGATCAATCTCTTTCGGGAA+AGG | 0.520159 | 1_1:-18534625 | Msa0012340:intron |
| TTTCTGTAAACTGCACTTTG+TGG | 0.521710 | 1_1:-18534910 | Msa0012340:CDS |
| GCGAGGTGACTCAGATGTTA+GGG | 0.521994 | 1_1:-18533965 | Msa0012340:CDS |
| TCATTAAGTTTAACAAGGAT+AGG | 0.522536 | 1_1:-18534868 | Msa0012340:CDS |
| TGAAATTACTCCTCATAAGA+TGG | 0.524440 | 1_1:-18533158 | Msa0012340:CDS |
| TGTCAGCTGAATGAAGGGAA+TGG | 0.527101 | 1_1:-18535058 | Msa0012340:CDS |
| TCTAGCTGCTGATGTGATGA+TGG | 0.528864 | 1_1:-18533508 | Msa0012340:CDS |
| CAAAACAGACTTCATCAAAG+AGG | 0.529735 | 1_1:-18533084 | Msa0012340:CDS |
| CCCGAAAGAGATTGATCTCA+GGG | 0.531026 | 1_1:+18534630 | None:intergenic |
| ATGGCTTGAACTTAATGCTA+GGG | 0.536346 | 1_1:+18535253 | None:intergenic |
| ACTCCGCAGTAACATGATAC+AGG | 0.538727 | 1_1:-18533928 | Msa0012340:intron |
| AAGTATAAATTGATATGGAC+TGG | 0.538846 | 1_1:-18535318 | Msa0012340:CDS |
| GACTGTTGTTAAGGATGGCA+AGG | 0.547769 | 1_1:-18535597 | Msa0012340:CDS |
| GTCCTCTTCAGTAGCAACTT+GGG | 0.548162 | 1_1:+18534448 | None:intergenic |
| ACAGAGCAAGATTTCCACCT+TGG | 0.548824 | 1_1:+18533732 | None:intergenic |
| TGAGGAGTAATTTCAACAGT+AGG | 0.550787 | 1_1:+18533166 | None:intergenic |
| AAATTCATACCACGTCAAGC+TGG | 0.552957 | 1_1:+18534384 | None:intergenic |
| TGCTAGGGTTAGGGATGTCG+TGG | 0.554820 | 1_1:+18535268 | None:intergenic |
| TACTGCAAGATCAAAGAAGA+AGG | 0.556084 | 1_1:-18534812 | Msa0012340:intron |
| GAAAGACTCTCGCAACTCAT+GGG | 0.563641 | 1_1:+18533241 | None:intergenic |
| TAGTTAAGCATAACTATGAC+AGG | 0.563843 | 1_1:+18534833 | None:intergenic |
| AAATGGACTGTTGTTAAGGA+TGG | 0.564477 | 1_1:-18535602 | Msa0012340:CDS |
| CACCCAAGTTGCTACTGAAG+AGG | 0.565830 | 1_1:-18534450 | Msa0012340:CDS |
| GTTACTGCGGAGTTGGGCAG+CGG | 0.569978 | 1_1:+18533938 | None:intergenic |
| CAATTTATACTTGTGATCAG+AGG | 0.571382 | 1_1:+18535329 | None:intergenic |
| GTGTCCAAAGATTGCTAAAG+GGG | 0.572826 | 1_1:-18534199 | Msa0012340:CDS |
| CTCCTTACACATGTGACGAT+GGG | 0.577478 | 1_1:-18534170 | Msa0012340:CDS |
| GCAACAGAATTGAAAGAACC+TGG | 0.585219 | 1_1:+18533208 | None:intergenic |
| GGTAACATCTTCATTAGAAG+CGG | 0.585686 | 1_1:+18533464 | None:intergenic |
| TATAAATTGATATGGACTGG+TGG | 0.586012 | 1_1:-18535315 | Msa0012340:CDS |
| ACTTTGGTTTGAAAGACTTG+AGG | 0.589756 | 1_1:-18535018 | Msa0012340:intron |
| TCTTCTGAATATGACCCTGA+TGG | 0.592479 | 1_1:-18533310 | Msa0012340:CDS |
| GGCTAAGTTCCCCAACCTTG+TGG | 0.593205 | 1_1:-18533667 | Msa0012340:intron |
| GTTGATCATAGTTGATGCTA+AGG | 0.594007 | 1_1:-18535564 | Msa0012340:intron |
| TATAACATACCTGACAATCT+CGG | 0.594795 | 1_1:+18534134 | None:intergenic |
| ATAATCATACCACAAGGTTG+GGG | 0.595471 | 1_1:+18533658 | None:intergenic |
| AAAGTTAGATAATGTGTATG+TGG | 0.602431 | 1_1:+18535383 | None:intergenic |
| AGCTTTCATTGACCGAGTCA+GGG | 0.602620 | 1_1:-18533688 | Msa0012340:CDS |
| TTCCATAAGACTGTGTACAC+TGG | 0.603468 | 1_1:+18534474 | None:intergenic |
| CCTCCTTACACATGTGACGA+TGG | 0.604605 | 1_1:-18534171 | Msa0012340:CDS |
| TGTAAACTGCACTTTGTGGG+AGG | 0.606036 | 1_1:-18534906 | Msa0012340:CDS |
| AGTCTTTCTCAACTCACACC+AGG | 0.611490 | 1_1:-18533226 | Msa0012340:CDS |
| CAAACAGCCTTGTAACCAGT+TGG | 0.614260 | 1_1:+18535429 | None:intergenic |
| TGGGGAACTTAGCCCTGACT+CGG | 0.615150 | 1_1:+18533676 | None:intergenic |
| AAAACAGACTTCATCAAAGA+GGG | 0.616443 | 1_1:-18533083 | Msa0012340:CDS |
| AAAGTTCATTAAGTTTAACA+AGG | 0.620574 | 1_1:-18534873 | Msa0012340:CDS |
| ACCCAGATTACACCAATCAG+TGG | 0.621520 | 1_1:-18533283 | Msa0012340:CDS |
| GCTACTGTCAGCTGAATGAA+GGG | 0.623531 | 1_1:-18535063 | Msa0012340:CDS |
| AGCTGGATAACCTGAGACAG+GGG | 0.626283 | 1_1:+18534401 | None:intergenic |
| AGGTCAAATGGCAACCAAGG+TGG | 0.634130 | 1_1:-18533746 | Msa0012340:CDS |
| AAGCTGGATAACCTGAGACA+GGG | 0.638075 | 1_1:+18534400 | None:intergenic |
| TTAAGGTCAAATGGCAACCA+AGG | 0.639792 | 1_1:-18533749 | Msa0012340:CDS |
| GCCAAGTCATCCATTATGGG+AGG | 0.650001 | 1_1:+18533789 | None:intergenic |
| CCATCGTCACATGTGTAAGG+AGG | 0.651049 | 1_1:+18534171 | None:intergenic |
| AACAAGGATAGGAAAGAAGG+TGG | 0.654602 | 1_1:-18534857 | Msa0012340:CDS |
| TAATCTGGGTCAAACCATCA+GGG | 0.657518 | 1_1:+18533296 | None:intergenic |
| GATGGATGTTTCCTATGACA+TGG | 0.657586 | 1_1:-18534015 | Msa0012340:CDS |
| TCAGGTTATCCAGCTTGACG+TGG | 0.658180 | 1_1:-18534393 | Msa0012340:intron |
| CATATTCAGAAGATGCAGAG+AGG | 0.712555 | 1_1:+18533320 | None:intergenic |
| AAACCTGTATCATGTTACTG+CGG | 0.742791 | 1_1:+18533925 | None:intergenic |
| CTAACATCTGAGTCACCTCG+CGG | 0.748415 | 1_1:+18533967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTATTAGTTTATTTT+TGG | - | chr1_1:18533205-18533224 | Msa0012340:CDS | 10.0% |
| !!! | CTTATTTGCTATTTTTTTTA+AGG | - | chr1_1:18533341-18533360 | Msa0012340:intron | 15.0% |
| !!! | AATGCTATTTGTTTTATTAT+AGG | - | chr1_1:18533594-18533613 | Msa0012340:intron | 15.0% |
| !!! | ATGCTATTTGTTTTATTATA+GGG | - | chr1_1:18533595-18533614 | Msa0012340:intron | 15.0% |
| !! | TTCTGAATATATATGTTATA+GGG | + | chr1_1:18534499-18534518 | None:intergenic | 15.0% |
| !! | GTTATATCTTGATCAATAAT+AGG | + | chr1_1:18533098-18533117 | None:intergenic | 20.0% |
| !! | ATATAACATTTCCCTTAATA+AGG | - | chr1_1:18533111-18533130 | Msa0012340:CDS | 20.0% |
| !!! | TTTACAACTGTTTTTTTTTG+TGG | - | chr1_1:18533150-18533169 | Msa0012340:CDS | 20.0% |
| !! | ATCACAAGTATAAATTGATA+TGG | - | chr1_1:18533746-18533765 | Msa0012340:CDS | 20.0% |
| !!! | GTCATTTTAATAGATGTTAT+TGG | - | chr1_1:18533966-18533985 | Msa0012340:CDS | 20.0% |
| !! | AAAGTTCATTAAGTTTAACA+AGG | - | chr1_1:18534196-18534215 | Msa0012340:CDS | 20.0% |
| !! | AAGTATTTGATACACTTAAT+GGG | + | chr1_1:18534385-18534404 | None:intergenic | 20.0% |
| !! | TAAGTATTTGATACACTTAA+TGG | + | chr1_1:18534386-18534405 | None:intergenic | 20.0% |
| !!! | GTTCTGAATATATATGTTAT+AGG | + | chr1_1:18534500-18534519 | None:intergenic | 20.0% |
| !! | AATATAAAGACATAGAAGTT+AGG | + | chr1_1:18534527-18534546 | None:intergenic | 20.0% |
| !! | TCAATTAGTGAATTAAATGA+AGG | + | chr1_1:18535494-18535513 | None:intergenic | 20.0% |
| !! | TTTAATGTCATGTAATATCA+TGG | - | chr1_1:18535680-18535699 | Msa0012340:intron | 20.0% |
| !!! | GTTTACTGTTGTGATTTTTT+TGG | - | chr1_1:18533058-18533077 | Msa0012340:CDS | 25.0% |
| ! | CAAAAACGAAACCTTATTAA+GGG | + | chr1_1:18533125-18533144 | None:intergenic | 25.0% |
| ! | ACAAAAACGAAACCTTATTA+AGG | + | chr1_1:18533126-18533145 | None:intergenic | 25.0% |
| !! | TTTTGTGGATCTATATGTTT+AGG | - | chr1_1:18533165-18533184 | Msa0012340:CDS | 25.0% |
| !!! | TTTTTGGTTGTTGTTGTTTA+AGG | - | chr1_1:18533221-18533240 | Msa0012340:CDS | 25.0% |
| ! | ATAAATCACATAGTGAAAAG+TGG | + | chr1_1:18533536-18533555 | None:intergenic | 25.0% |
| ! | AAAGTTAGATAATGTGTATG+TGG | + | chr1_1:18533689-18533708 | None:intergenic | 25.0% |
| ! | AAGTATAAATTGATATGGAC+TGG | - | chr1_1:18533751-18533770 | Msa0012340:CDS | 25.0% |
| ! | CAATACATGTACAGAAATTT+AGG | + | chr1_1:18533933-18533952 | None:intergenic | 25.0% |
| ! | AAAAAGCTACAAGTTAACTT+TGG | - | chr1_1:18534035-18534054 | Msa0012340:intron | 25.0% |
| !! | AGGTGAACAACTTATATTTT+AGG | - | chr1_1:18534071-18534090 | Msa0012340:intron | 25.0% |
| ! | TCATTAAGTTTAACAAGGAT+AGG | - | chr1_1:18534201-18534220 | Msa0012340:CDS | 25.0% |
| ! | TTGTAAGTTTACATTGTCTT+TGG | - | chr1_1:18534295-18534314 | Msa0012340:intron | 25.0% |
| !! | AGAGCTTTTAATGAAAATGT+AGG | - | chr1_1:18534353-18534372 | Msa0012340:intron | 25.0% |
| !! | GAGCTTTTAATGAAAATGTA+GGG | - | chr1_1:18534354-18534373 | Msa0012340:intron | 25.0% |
| !!! | CTTATTGATACCCTTATTTT+AGG | - | chr1_1:18535020-18535039 | Msa0012340:CDS | 25.0% |
| !! | ACACATTTTCACAAACTATT+GGG | - | chr1_1:18535181-18535200 | Msa0012340:intron | 25.0% |
| ! | AATGTTTCAATTGTCTTATC+AGG | - | chr1_1:18535231-18535250 | Msa0012340:CDS | 25.0% |
| ! | TGAAAAAACTATGGTCTTTA+AGG | - | chr1_1:18535303-18535322 | Msa0012340:CDS | 25.0% |
| ! | CATATAATAATCATACCACA+AGG | + | chr1_1:18535420-18535439 | None:intergenic | 25.0% |
| ! | TTATTATATGTCACAAACCT+TGG | - | chr1_1:18535430-18535449 | Msa0012340:CDS | 25.0% |
| ! | ATTAGTGAATTAAATGAAGG+AGG | + | chr1_1:18535491-18535510 | None:intergenic | 25.0% |
| !! | TAATTTGTCCATCATATTTC+AGG | - | chr1_1:18535516-18535535 | Msa0012340:intron | 25.0% |
| !! | CAATAATTCAGGTTAGTAAA+AGG | + | chr1_1:18535706-18535725 | None:intergenic | 25.0% |
| ! | AACATAGTTGACAATAATTC+AGG | + | chr1_1:18535717-18535736 | None:intergenic | 25.0% |
| AAACATATGACACAGATAAG+TGG | + | chr1_1:18533310-18533329 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTAAGGCGCCAAAA+TGG | - | chr1_1:18533352-18533371 | Msa0012340:intron | 30.0% |
| TCACAAACTAGAAAGATTTC+TGG | - | chr1_1:18533420-18533439 | Msa0012340:intron | 30.0% | |
| ! | GAAACTAAATGTTCGAGTTA+AGG | - | chr1_1:18533442-18533461 | Msa0012340:intron | 30.0% |
| !! | ATTCAAGTTGTTATTCCAAC+TGG | - | chr1_1:18533625-18533644 | Msa0012340:intron | 30.0% |
| CAATTTATACTTGTGATCAG+AGG | + | chr1_1:18533743-18533762 | None:intergenic | 30.0% | |
| !! | TATAAATTGATATGGACTGG+TGG | - | chr1_1:18533754-18533773 | Msa0012340:CDS | 30.0% |
| TCATATCCCTATACTAATTG+TGG | - | chr1_1:18534115-18534134 | Msa0012340:intron | 30.0% | |
| GACAAACCACAATTAGTATA+GGG | + | chr1_1:18534124-18534143 | None:intergenic | 30.0% | |
| AGACAAACCACAATTAGTAT+AGG | + | chr1_1:18534125-18534144 | None:intergenic | 30.0% | |
| TTTAACAAGGATAGGAAAGA+AGG | - | chr1_1:18534209-18534228 | Msa0012340:CDS | 30.0% | |
| TAGTTAAGCATAACTATGAC+AGG | + | chr1_1:18534239-18534258 | None:intergenic | 30.0% | |
| ! | CTTTTAATGAAAATGTAGGG+CGG | - | chr1_1:18534357-18534376 | Msa0012340:intron | 30.0% |
| ! | ATCTAGTTTGATATGTGAGA+TGG | + | chr1_1:18534758-18534777 | None:intergenic | 30.0% |
| ! | AAAGTAGTACCAACCATTTT+TGG | + | chr1_1:18534839-18534858 | None:intergenic | 30.0% |
| TATAACATACCTGACAATCT+CGG | + | chr1_1:18534938-18534957 | None:intergenic | 30.0% | |
| CCATACTTAATACGCATATA+GGG | + | chr1_1:18534968-18534987 | None:intergenic | 30.0% | |
| TCCATACTTAATACGCATAT+AGG | + | chr1_1:18534969-18534988 | None:intergenic | 30.0% | |
| ATTAAGTATGGAATGACTCT+TGG | - | chr1_1:18534977-18534996 | Msa0012340:intron | 30.0% | |
| CAAGCTTGTACCTAAAATAA+GGG | + | chr1_1:18535033-18535052 | None:intergenic | 30.0% | |
| TCAAGCTTGTACCTAAAATA+AGG | + | chr1_1:18535034-18535053 | None:intergenic | 30.0% | |
| ! | ATAGTTTGTGAAAATGTGTG+AGG | + | chr1_1:18535180-18535199 | None:intergenic | 30.0% |
| ! | CACACATTTTCACAAACTAT+TGG | - | chr1_1:18535180-18535199 | Msa0012340:intron | 30.0% |
| TTTCACAAACTATTGGGTTT+AGG | - | chr1_1:18535187-18535206 | Msa0012340:intron | 30.0% | |
| TCTGTTGTATGTTACAAAGA+AGG | - | chr1_1:18535355-18535374 | Msa0012340:intron | 30.0% | |
| AATAATCATACCACAAGGTT+GGG | + | chr1_1:18535415-18535434 | None:intergenic | 30.0% | |
| TAATAATCATACCACAAGGT+TGG | + | chr1_1:18535416-18535435 | None:intergenic | 30.0% | |
| CAAACTACTTACAGTTGAAA+TGG | + | chr1_1:18535629-18535648 | None:intergenic | 30.0% | |
| TTCAATTCTGTTGCTGAAAA+AGG | - | chr1_1:18535870-18535889 | Msa0012340:intron | 30.0% | |
| TGAAATTACTCCTCATAAGA+TGG | - | chr1_1:18535911-18535930 | Msa0012340:intron | 30.0% | |
| AAAACAGACTTCATCAAAGA+GGG | - | chr1_1:18535986-18536005 | Msa0012340:intron | 30.0% | |
| ! | TGGTCTTTCCATTTCCATTT+TGG | + | chr1_1:18533369-18533388 | None:intergenic | 35.0% |
| ! | ATGTTCGAGTTAAGGACAAA+TGG | - | chr1_1:18533450-18533469 | Msa0012340:intron | 35.0% |
| !! | AAATGGACTGTTGTTAAGGA+TGG | - | chr1_1:18533467-18533486 | Msa0012340:CDS | 35.0% |
| ! | GTTGATCATAGTTGATGCTA+AGG | - | chr1_1:18533505-18533524 | Msa0012340:CDS | 35.0% |
| TGTTATTCCAACTGGTTACA+AGG | - | chr1_1:18533633-18533652 | Msa0012340:intron | 35.0% | |
| ! | TGTATGTGGTGTTTTCTAGA+AGG | + | chr1_1:18533675-18533694 | None:intergenic | 35.0% |
| TGAACTTAATGCTAGGGTTA+GGG | + | chr1_1:18533813-18533832 | None:intergenic | 35.0% | |
| TTGAACTTAATGCTAGGGTT+AGG | + | chr1_1:18533814-18533833 | None:intergenic | 35.0% | |
| ATGGCTTGAACTTAATGCTA+GGG | + | chr1_1:18533819-18533838 | None:intergenic | 35.0% | |
| AATGGCTTGAACTTAATGCT+AGG | + | chr1_1:18533820-18533839 | None:intergenic | 35.0% | |
| !! | ACTTTGGTTTGAAAGACTTG+AGG | - | chr1_1:18534051-18534070 | Msa0012340:intron | 35.0% |
| TTTCTGTAAACTGCACTTTG+TGG | - | chr1_1:18534159-18534178 | Msa0012340:CDS | 35.0% | |
| TTCTGTAAACTGCACTTTGT+GGG | - | chr1_1:18534160-18534179 | Msa0012340:CDS | 35.0% | |
| TACTGCAAGATCAAAGAAGA+AGG | - | chr1_1:18534257-18534276 | Msa0012340:CDS | 35.0% | |
| AAAGACATAGAAGTTAGGAC+TGG | + | chr1_1:18534522-18534541 | None:intergenic | 35.0% | |
| GAATCTGGGAATTAGATAGA+AGG | + | chr1_1:18534646-18534665 | None:intergenic | 35.0% | |
| ! | ATAGTGAATCTGAGAGTATG+TGG | + | chr1_1:18534726-18534745 | None:intergenic | 35.0% |
| AAAGTGAACTCGACCAAAAA+TGG | - | chr1_1:18534823-18534842 | Msa0012340:CDS | 35.0% | |
| AAGTGTCCAAAGATTGCTAA+AGG | - | chr1_1:18534868-18534887 | Msa0012340:CDS | 35.0% | |
| AGTGTCCAAAGATTGCTAAA+GGG | - | chr1_1:18534869-18534888 | Msa0012340:CDS | 35.0% | |
| CCCTATATGCGTATTAAGTA+TGG | - | chr1_1:18534965-18534984 | Msa0012340:intron | 35.0% | |
| !! | TTTTAGGTACAAGCTTGAGA+TGG | - | chr1_1:18535036-18535055 | Msa0012340:CDS | 35.0% |
| AAACCTGTATCATGTTACTG+CGG | + | chr1_1:18535147-18535166 | None:intergenic | 35.0% | |
| TTTCAATTGTCTTATCAGGC+TGG | - | chr1_1:18535235-18535254 | Msa0012340:CDS | 35.0% | |
| CTTTGAATTTCCTCCCATAA+TGG | - | chr1_1:18535270-18535289 | Msa0012340:CDS | 35.0% | |
| ! | TGACTTGGCTGAAAAAACTA+TGG | - | chr1_1:18535294-18535313 | Msa0012340:CDS | 35.0% |
| !! | CTATGGTCTTTAAGGTCAAA+TGG | - | chr1_1:18535311-18535330 | Msa0012340:CDS | 35.0% |
| ATAATCATACCACAAGGTTG+GGG | + | chr1_1:18535414-18535433 | None:intergenic | 35.0% | |
| TTTGTCCATCATATTTCAGG+AGG | - | chr1_1:18535519-18535538 | Msa0012340:intron | 35.0% | |
| GGTAACATCTTCATTAGAAG+CGG | + | chr1_1:18535608-18535627 | None:intergenic | 35.0% | |
| TGAGGAGTAATTTCAACAGT+AGG | + | chr1_1:18535906-18535925 | None:intergenic | 35.0% | |
| ! | ACTGATGATTTTTGCAATGC+TGG | - | chr1_1:18535939-18535958 | Msa0012340:intron | 35.0% |
| ! | TTTGATGAAGTCTGTTTTGC+AGG | + | chr1_1:18535984-18536003 | None:intergenic | 35.0% |
| CAAAACAGACTTCATCAAAG+AGG | - | chr1_1:18535985-18536004 | Msa0012340:intron | 35.0% | |
| ! | TTAAGGCGCCAAAATGGAAA+TGG | - | chr1_1:18533358-18533377 | Msa0012340:intron | 40.0% |
| !! | GGACAAATGGACTGTTGTTA+AGG | - | chr1_1:18533463-18533482 | Msa0012340:CDS | 40.0% |
| ! | TCATAGTTGATGCTAAGGTG+AGG | - | chr1_1:18533510-18533529 | Msa0012340:CDS | 40.0% |
| !!! | GCCATTTTCTGAGATTGTGT+CGG | - | chr1_1:18533834-18533853 | Msa0012340:intron | 40.0% |
| !!! | CCATTTTCTGAGATTGTGTC+GGG | - | chr1_1:18533835-18533854 | Msa0012340:intron | 40.0% |
| AACAAGGATAGGAAAGAAGG+TGG | - | chr1_1:18534212-18534231 | Msa0012340:CDS | 40.0% | |
| TCCCTGAGATCAATCTCTTT+CGG | - | chr1_1:18534438-18534457 | Msa0012340:CDS | 40.0% | |
| AGATCAATCTCTTTCGGGAA+AGG | - | chr1_1:18534444-18534463 | Msa0012340:CDS | 40.0% | |
| ATCCAGTGTACACAGTCTTA+TGG | - | chr1_1:18534593-18534612 | Msa0012340:intron | 40.0% | |
| TTCCATAAGACTGTGTACAC+TGG | + | chr1_1:18534598-18534617 | None:intergenic | 40.0% | |
| AAATTCATACCACGTCAAGC+TGG | + | chr1_1:18534688-18534707 | None:intergenic | 40.0% | |
| TGAACTCGACCAAAAATGGT+TGG | - | chr1_1:18534827-18534846 | Msa0012340:CDS | 40.0% | |
| GTGTCCAAAGATTGCTAAAG+GGG | - | chr1_1:18534870-18534889 | Msa0012340:CDS | 40.0% | |
| TTGTCCCCTTTAGCAATCTT+TGG | + | chr1_1:18534877-18534896 | None:intergenic | 40.0% | |
| GATGGATGTTTCCTATGACA+TGG | - | chr1_1:18535054-18535073 | Msa0012340:CDS | 40.0% | |
| AACAGTTCTGTCCATGTCAT+AGG | + | chr1_1:18535068-18535087 | None:intergenic | 40.0% | |
| !!! | ACAGAACTGTTTTTGTCGTC+TGG | - | chr1_1:18535077-18535096 | Msa0012340:CDS | 40.0% |
| !!! | CAGAACTGTTTTTGTCGTCT+GGG | - | chr1_1:18535078-18535097 | Msa0012340:CDS | 40.0% |
| TATCATGTTACTGCGGAGTT+GGG | + | chr1_1:18535140-18535159 | None:intergenic | 40.0% | |
| TCAGCCAAGTCATCCATTAT+GGG | + | chr1_1:18535286-18535305 | None:intergenic | 40.0% | |
| TTCAGCCAAGTCATCCATTA+TGG | + | chr1_1:18535287-18535306 | None:intergenic | 40.0% | |
| TTAAGGTCAAATGGCAACCA+AGG | - | chr1_1:18535320-18535339 | Msa0012340:CDS | 40.0% | |
| ! | TGTCACAAACCTTGGTAGTA+TGG | - | chr1_1:18535438-18535457 | Msa0012340:CDS | 40.0% |
| AAGATTCAGCCATACTACCA+AGG | + | chr1_1:18535450-18535469 | None:intergenic | 40.0% | |
| TTCAGCCTCCTGAAATATGA+TGG | + | chr1_1:18535527-18535546 | None:intergenic | 40.0% | |
| TCATTAGAAGCGGTTGGATT+AGG | + | chr1_1:18535598-18535617 | None:intergenic | 40.0% | |
| ACATCTTCATTAGAAGCGGT+TGG | + | chr1_1:18535604-18535623 | None:intergenic | 40.0% | |
| CATATTCAGAAGATGCAGAG+AGG | + | chr1_1:18535752-18535771 | None:intergenic | 40.0% | |
| TCTTCTGAATATGACCCTGA+TGG | - | chr1_1:18535759-18535778 | Msa0012340:intron | 40.0% | |
| TAATCTGGGTCAAACCATCA+GGG | + | chr1_1:18535776-18535795 | None:intergenic | 40.0% | |
| GCATTCTTTAAGCCACTGAT+TGG | + | chr1_1:18535801-18535820 | None:intergenic | 40.0% | |
| ATCAGTGGCTTAAAGAATGC+TGG | - | chr1_1:18535801-18535820 | Msa0012340:intron | 40.0% | |
| GCAACAGAATTGAAAGAACC+TGG | + | chr1_1:18535864-18535883 | None:intergenic | 40.0% | |
| ! | GATGATTTTTGCAATGCTGG+TGG | - | chr1_1:18535942-18535961 | Msa0012340:intron | 40.0% |
| TTGCAGGTGTGATCTCATTA+TGG | + | chr1_1:18535968-18535987 | None:intergenic | 40.0% | |
| ! | AACTCGACGGGTCTTACTTT+TGG | + | chr1_1:18533389-18533408 | None:intergenic | 45.0% |
| ATTGCAGCAATGAACTCGAC+GGG | + | chr1_1:18533401-18533420 | None:intergenic | 45.0% | |
| GATTGCAGCAATGAACTCGA+CGG | + | chr1_1:18533402-18533421 | None:intergenic | 45.0% | |
| GACTGTTGTTAAGGATGGCA+AGG | - | chr1_1:18533472-18533491 | Msa0012340:CDS | 45.0% | |
| !! | TAAGGATGGCAAGGAGCATT+TGG | - | chr1_1:18533481-18533500 | Msa0012340:CDS | 45.0% |
| ! | CAAACAGCCTTGTAACCAGT+TGG | + | chr1_1:18533643-18533662 | None:intergenic | 45.0% |
| CCCGACACAATCTCAGAAAA+TGG | + | chr1_1:18533838-18533857 | None:intergenic | 45.0% | |
| CTGAGATTGTGTCGGGAAAA+TGG | - | chr1_1:18533842-18533861 | Msa0012340:intron | 45.0% | |
| GCTACTGTCAGCTGAATGAA+GGG | - | chr1_1:18534006-18534025 | Msa0012340:CDS | 45.0% | |
| TGTCAGCTGAATGAAGGGAA+TGG | - | chr1_1:18534011-18534030 | Msa0012340:CDS | 45.0% | |
| GTCAGCTGAATGAAGGGAAT+GGG | - | chr1_1:18534012-18534031 | Msa0012340:CDS | 45.0% | |
| TGTAAACTGCACTTTGTGGG+AGG | - | chr1_1:18534163-18534182 | Msa0012340:CDS | 45.0% | |
| CTCAGGGATGTTCTCATTGA+TGG | + | chr1_1:18534426-18534445 | None:intergenic | 45.0% | |
| CCCGAAAGAGATTGATCTCA+GGG | + | chr1_1:18534442-18534461 | None:intergenic | 45.0% | |
| CCCTGAGATCAATCTCTTTC+GGG | - | chr1_1:18534439-18534458 | Msa0012340:CDS | 45.0% | |
| TCCCGAAAGAGATTGATCTC+AGG | + | chr1_1:18534443-18534462 | None:intergenic | 45.0% | |
| GACATCAGCTGCTCATCTTT+AGG | + | chr1_1:18534563-18534582 | None:intergenic | 45.0% | |
| AAGACTGTGTACACTGGATC+TGG | + | chr1_1:18534592-18534611 | None:intergenic | 45.0% | |
| GTCCTCTTCAGTAGCAACTT+GGG | + | chr1_1:18534624-18534643 | None:intergenic | 45.0% | |
| AAGCTGGATAACCTGAGACA+GGG | + | chr1_1:18534672-18534691 | None:intergenic | 45.0% | |
| ! | ATCTGAGAGTATGTGGTGAG+TGG | + | chr1_1:18534719-18534738 | None:intergenic | 45.0% |
| CTCCTTACACATGTGACGAT+GGG | - | chr1_1:18534899-18534918 | Msa0012340:CDS | 45.0% | |
| GTATCATGTTACTGCGGAGT+TGG | + | chr1_1:18535141-18535160 | None:intergenic | 45.0% | |
| ACTCCGCAGTAACATGATAC+AGG | - | chr1_1:18535141-18535160 | Msa0012340:intron | 45.0% | |
| GGGAGGAAATTCAAAGCGAT+TGG | + | chr1_1:18535266-18535285 | None:intergenic | 45.0% | |
| !! | TCCTCCCATAATGGATGACT+TGG | - | chr1_1:18535279-18535298 | Msa0012340:CDS | 45.0% |
| ACAGAGCAAGATTTCCACCT+TGG | + | chr1_1:18535340-18535359 | None:intergenic | 45.0% | |
| AAGCTTTCATTGACCGAGTC+AGG | - | chr1_1:18535380-18535399 | Msa0012340:CDS | 45.0% | |
| AGCTTTCATTGACCGAGTCA+GGG | - | chr1_1:18535381-18535400 | Msa0012340:CDS | 45.0% | |
| GCAGCTAGATTCTCAATCTC+TGG | + | chr1_1:18535550-18535569 | None:intergenic | 45.0% | |
| TCTAGCTGCTGATGTGATGA+TGG | - | chr1_1:18535561-18535580 | Msa0012340:intron | 45.0% | |
| GTAATCTGGGTCAAACCATC+AGG | + | chr1_1:18535777-18535796 | None:intergenic | 45.0% | |
| ACCCAGATTACACCAATCAG+TGG | - | chr1_1:18535786-18535805 | Msa0012340:intron | 45.0% | |
| ! | GCCACTGATTGGTGTAATCT+GGG | + | chr1_1:18535790-18535809 | None:intergenic | 45.0% |
| ! | AGCCACTGATTGGTGTAATC+TGG | + | chr1_1:18535791-18535810 | None:intergenic | 45.0% |
| GAAAGACTCTCGCAACTCAT+GGG | + | chr1_1:18535831-18535850 | None:intergenic | 45.0% | |
| AGAAAGACTCTCGCAACTCA+TGG | + | chr1_1:18535832-18535851 | None:intergenic | 45.0% | |
| AGTCTTTCTCAACTCACACC+AGG | - | chr1_1:18535843-18535862 | Msa0012340:intron | 45.0% | |
| TCAGTTGCAGCCATCTTATG+AGG | + | chr1_1:18535924-18535943 | None:intergenic | 45.0% | |
| CGCTACTGTCAGCTGAATGA+AGG | - | chr1_1:18534005-18534024 | Msa0012340:CDS | 50.0% | |
| CACCCAAGTTGCTACTGAAG+AGG | - | chr1_1:18534619-18534638 | Msa0012340:intron | 50.0% | |
| GGTCCTCTTCAGTAGCAACT+TGG | + | chr1_1:18534625-18534644 | None:intergenic | 50.0% | |
| AGCTGGATAACCTGAGACAG+GGG | + | chr1_1:18534671-18534690 | None:intergenic | 50.0% | |
| CAAGCTGGATAACCTGAGAC+AGG | + | chr1_1:18534673-18534692 | None:intergenic | 50.0% | |
| TCAGGTTATCCAGCTTGACG+TGG | - | chr1_1:18534676-18534695 | Msa0012340:CDS | 50.0% | |
| CCATCGTCACATGTGTAAGG+AGG | + | chr1_1:18534901-18534920 | None:intergenic | 50.0% | |
| CCTCCTTACACATGTGACGA+TGG | - | chr1_1:18534898-18534917 | Msa0012340:CDS | 50.0% | |
| TGCCCATCGTCACATGTGTA+AGG | + | chr1_1:18534904-18534923 | None:intergenic | 50.0% | |
| ACACTGAGACCGAGATTGTC+AGG | - | chr1_1:18534926-18534945 | Msa0012340:intron | 50.0% | |
| CTAACATCTGAGTCACCTCG+CGG | + | chr1_1:18535105-18535124 | None:intergenic | 50.0% | |
| GCGAGGTGACTCAGATGTTA+GGG | - | chr1_1:18535104-18535123 | Msa0012340:intron | 50.0% | |
| GCCAAGTCATCCATTATGGG+AGG | + | chr1_1:18535283-18535302 | None:intergenic | 50.0% | |
| AGGTCAAATGGCAACCAAGG+TGG | - | chr1_1:18535323-18535342 | Msa0012340:CDS | 50.0% | |
| TGCTAGGGTTAGGGATGTCG+TGG | + | chr1_1:18533804-18533823 | None:intergenic | 55.0% | |
| CTGAGACAGGGGCAGAATCT+GGG | + | chr1_1:18534660-18534679 | None:intergenic | 55.0% | |
| CGCGAGGTGACTCAGATGTT+AGG | - | chr1_1:18535103-18535122 | Msa0012340:intron | 55.0% | |
| TGGGGAACTTAGCCCTGACT+CGG | + | chr1_1:18535396-18535415 | None:intergenic | 55.0% | |
| GGCTAAGTTCCCCAACCTTG+TGG | - | chr1_1:18535402-18535421 | Msa0012340:CDS | 55.0% | |
| CCTGAGACAGGGGCAGAATC+TGG | + | chr1_1:18534661-18534680 | None:intergenic | 60.0% | |
| CCAGATTCTGCCCCTGTCTC+AGG | - | chr1_1:18534658-18534677 | Msa0012340:CDS | 60.0% | |
| !! | TTTTGTCGTCTGGGACCGCG+AGG | - | chr1_1:18535087-18535106 | Msa0012340:CDS | 60.0% |
| GTTACTGCGGAGTTGGGCAG+CGG | + | chr1_1:18535134-18535153 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18533054 | 18536037 | 18533054 | ID=Msa0012340;Name=Msa0012340 |
| chr1_1 | mRNA | 18533054 | 18536037 | 18533054 | ID=Msa0012340-mRNA-1;Parent=Msa0012340;Name=Msa0012340-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.46|0.21|0.92|0.92|0.92|14|0|560 |
| chr1_1 | exon | 18536034 | 18536037 | 18536034 | ID=Msa0012340-mRNA-1:exon:6853;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18535700 | 18535728 | 18535700 | ID=Msa0012340-mRNA-1:exon:6852;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18535565 | 18535660 | 18535565 | ID=Msa0012340-mRNA-1:exon:6851;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18535380 | 18535475 | 18535380 | ID=Msa0012340-mRNA-1:exon:6850;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18535208 | 18535370 | 18535208 | ID=Msa0012340-mRNA-1:exon:6849;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18535019 | 18535112 | 18535019 | ID=Msa0012340-mRNA-1:exon:6848;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18534813 | 18534937 | 18534813 | ID=Msa0012340-mRNA-1:exon:6847;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18534626 | 18534716 | 18534626 | ID=Msa0012340-mRNA-1:exon:6846;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18534394 | 18534535 | 18534394 | ID=Msa0012340-mRNA-1:exon:6845;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18534144 | 18534301 | 18534144 | ID=Msa0012340-mRNA-1:exon:6844;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18533929 | 18534049 | 18533929 | ID=Msa0012340-mRNA-1:exon:6843;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18533668 | 18533838 | 18533668 | ID=Msa0012340-mRNA-1:exon:6842;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18533455 | 18533553 | 18533455 | ID=Msa0012340-mRNA-1:exon:6841;Parent=Msa0012340-mRNA-1 |
| chr1_1 | exon | 18533054 | 18533347 | 18533054 | ID=Msa0012340-mRNA-1:exon:6840;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18536034 | 18536037 | 18536034 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18535700 | 18535728 | 18535700 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18535565 | 18535660 | 18535565 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18535380 | 18535475 | 18535380 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18535208 | 18535370 | 18535208 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18535019 | 18535112 | 18535019 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18534813 | 18534937 | 18534813 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18534626 | 18534716 | 18534626 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18534394 | 18534535 | 18534394 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18534144 | 18534301 | 18534144 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18533929 | 18534049 | 18533929 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18533668 | 18533838 | 18533668 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18533455 | 18533553 | 18533455 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| chr1_1 | CDS | 18533054 | 18533347 | 18533054 | ID=Msa0012340-mRNA-1:cds;Parent=Msa0012340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
