Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386580 | AES72516.1 | 88.281 | 128 | 15 | 0 | 1 | 128 | 203 | 330 | 1.42e-68 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386580 | G7J7F5 | 88.281 | 128 | 15 | 0 | 1 | 128 | 203 | 330 | 6.78e-69 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006410 | Msa0386580 | 0.800710 | 1.268172e-48 | -8.615850e-47 |
| Msa0012340 | Msa0386580 | 0.802115 | 6.538460e-49 | -8.615850e-47 |
| Msa0172420 | Msa0386580 | 0.814806 | 1.277191e-51 | -8.615850e-47 |
| Msa0194440 | Msa0386580 | 0.811531 | 6.682401e-51 | -8.615850e-47 |
| Msa0386580 | Msa0535630 | 0.810996 | 8.731680e-51 | -8.615850e-47 |
| Msa0386580 | Msa0538600 | 0.807395 | 5.162743e-50 | -8.615850e-47 |
| Msa0386580 | Msa0766630 | 0.806668 | 7.357802e-50 | -8.615850e-47 |
| Msa0386580 | Msa0810540 | 0.819919 | 9.018146e-53 | -8.615850e-47 |
| Msa0386580 | Msa0820120 | 0.803015 | 4.265362e-49 | -8.615850e-47 |
| Msa0386580 | Msa0889850 | 0.801771 | 7.694647e-49 | -8.615850e-47 |
| Msa0386580 | Msa0900770 | 0.820547 | 6.473958e-53 | -8.615850e-47 |
| Msa0386580 | Msa0925250 | 0.806290 | 8.836371e-50 | -8.615850e-47 |
| Msa0386580 | Msa0925290 | 0.814144 | 1.788757e-51 | -8.615850e-47 |
| Msa0386580 | Msa0943920 | 0.806555 | 7.771055e-50 | -8.615850e-47 |
| Msa0386580 | Msa0987240 | 0.813374 | 2.644264e-51 | -8.615850e-47 |
| Msa0386580 | Msa0991110 | 0.805967 | 1.033762e-49 | -8.615850e-47 |
| Msa0386580 | Msa1026900 | 0.800897 | 1.161746e-48 | -8.615850e-47 |
| Msa0386580 | Msa1116240 | 0.808832 | 2.551883e-50 | -8.615850e-47 |
| Msa0386580 | Msa1116250 | 0.818259 | 2.151680e-52 | -8.615850e-47 |
| Msa0386580 | Msa1228590 | 0.818437 | 1.961461e-52 | -8.615850e-47 |
| Msa0386580 | Msa1325860 | -0.816783 | 4.628207e-52 | -8.615850e-47 |
| Msa0386580 | Msa1362390 | 0.821718 | 3.478136e-53 | -8.615850e-47 |
| Msa0270520 | Msa0386580 | 0.802151 | 6.427413e-49 | -8.615850e-47 |
| Msa0349540 | Msa0386580 | 0.804617 | 1.982063e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386580 | MtrunA17_Chr3g0126961 | 88.281 | 128 | 15 | 0 | 1 | 128 | 203 | 330 | 7.89e-72 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386580 | AT5G53020.6 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 3.96e-15 | 70.9 |
| Msa0386580 | AT5G53020.7 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 3.96e-15 | 70.9 |
| Msa0386580 | AT5G53020.3 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.4 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.5 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.1 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.8 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.10 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.9 | 38.889 | 126 | 56 | 4 | 3 | 126 | 163 | 269 | 4.08e-15 | 70.9 |
| Msa0386580 | AT5G53020.2 | 38.889 | 126 | 56 | 4 | 3 | 126 | 154 | 260 | 4.57e-15 | 70.9 |
Find 117 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTATTTCATTCTATT+TGG | 0.136620 | 3_1:-90345137 | Msa0386580:three_prime_UTR |
| CCTTGAACTTACATTATTAT+TGG | 0.176841 | 3_1:-90346816 | Msa0386580:three_prime_UTR |
| TGCAAAATTTCACAAGGATT+TGG | 0.229217 | 3_1:-90348343 | Msa0386580:CDS |
| GAGAAATACCAGGAATTTAA+AGG | 0.235081 | 3_1:+90348124 | None:intergenic |
| ATTGAAAGCATGGGTATTAA+TGG | 0.240309 | 3_1:-90347285 | Msa0386580:three_prime_UTR |
| TATCACTCAAAATTATCTTT+TGG | 0.242168 | 3_1:+90345686 | None:intergenic |
| CTCACCTTGGTTGGGGCCAC+TGG | 0.250309 | 3_1:-90346853 | Msa0386580:three_prime_UTR |
| TCAGGAGCATATCGGCTTAT+AGG | 0.263631 | 3_1:-90346931 | Msa0386580:three_prime_UTR |
| GAGCGCTATACTCATGTTAA+AGG | 0.264314 | 3_1:-90346032 | Msa0386580:three_prime_UTR |
| ATTAATACAGTACCCTATAT+TGG | 0.266944 | 3_1:+90345237 | None:intergenic |
| GTGACGATAATGGCGGTTTC+AGG | 0.270766 | 3_1:-90346949 | Msa0386580:three_prime_UTR |
| GGGCCACTGGTTTGCGTTAA+GGG | 0.281888 | 3_1:-90346840 | Msa0386580:three_prime_UTR |
| AACACATTCCTTTAAATTCC+TGG | 0.283614 | 3_1:-90348132 | Msa0386580:intron |
| CTGAATTCTCTCACCTTGGT+TGG | 0.290952 | 3_1:-90346862 | Msa0386580:three_prime_UTR |
| TGAATTCTCTCACCTTGGTT+GGG | 0.293863 | 3_1:-90346861 | Msa0386580:three_prime_UTR |
| TTGATGCATACAAAGATCTT+TGG | 0.299279 | 3_1:+90346293 | None:intergenic |
| ACAAAACATCATAGATAATA+AGG | 0.307450 | 3_1:+90345351 | None:intergenic |
| GCACTATAGGTTGGATTACT+TGG | 0.310617 | 3_1:-90346355 | Msa0386580:intron |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.321151 | 3_1:-90345654 | Msa0386580:three_prime_UTR |
| CGGTCGCACTGTTATGCATT+TGG | 0.321613 | 3_1:-90348448 | Msa0386580:CDS |
| ATGTCGGCTTAACTTAGTTT+AGG | 0.324985 | 3_1:+90345296 | None:intergenic |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 3_1:-90345646 | Msa0386580:three_prime_UTR |
| TTAAGTTATCAAAGGTTAGA+AGG | 0.330731 | 3_1:-90348239 | Msa0386580:CDS |
| ATTATTGGAGAAGGTGGTTA+TGG | 0.341276 | 3_1:-90346801 | Msa0386580:three_prime_UTR |
| TCCGCGTCATCGCCGTGTTC+TGG | 0.349477 | 3_1:-90346890 | Msa0386580:three_prime_UTR |
| GGGGCCACTGGTTTGCGTTA+AGG | 0.349901 | 3_1:-90346841 | Msa0386580:three_prime_UTR |
| CTTCTGAAATAGATAGAATA+TGG | 0.354364 | 3_1:+90347156 | None:intergenic |
| TTAATACAGTACCCTATATT+GGG | 0.357741 | 3_1:+90345238 | None:intergenic |
| CTGCTGCATTGTGTAGTTAT+TGG | 0.365839 | 3_1:-90346119 | Msa0386580:three_prime_UTR |
| CAAAGAGGAGTCTGATTTGA+TGG | 0.372221 | 3_1:-90348388 | Msa0386580:CDS |
| AAAGGTTTACCTTTGGTAAG+AGG | 0.387850 | 3_1:+90345835 | None:intergenic |
| TGAAGTTCCTTATGGTCTCT+TGG | 0.393992 | 3_1:-90345659 | Msa0386580:three_prime_UTR |
| CACGGCGATGACGCGGATAT+AGG | 0.409649 | 3_1:+90346896 | None:intergenic |
| ATTATTGAGGAGTTTCTTAA+CGG | 0.412389 | 3_1:+90346737 | None:intergenic |
| CAACCAAGGTGAGAGAATTC+AGG | 0.412791 | 3_1:+90346863 | None:intergenic |
| AGGCTAAGCTTAGCTAAAGT+TGG | 0.416353 | 3_1:+90345371 | None:intergenic |
| TTAATATGCATTACTTTGAC+AGG | 0.417539 | 3_1:-90345219 | Msa0386580:three_prime_UTR |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 3_1:-90345425 | Msa0386580:three_prime_UTR |
| GTCTGGAGTTTATCTTATGC+GGG | 0.422345 | 3_1:-90345731 | Msa0386580:three_prime_UTR |
| GATAGAACTGAAGTTCCTTA+TGG | 0.424426 | 3_1:-90345667 | Msa0386580:three_prime_UTR |
| TCTCAGTCAGGTGACGATAA+TGG | 0.426193 | 3_1:-90346959 | Msa0386580:three_prime_UTR |
| GAATTCTCTCACCTTGGTTG+GGG | 0.427599 | 3_1:-90346860 | Msa0386580:three_prime_UTR |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 3_1:-90345640 | Msa0386580:three_prime_UTR |
| CTGCCTGAATTCTCTCACCT+TGG | 0.432420 | 3_1:-90346866 | Msa0386580:three_prime_UTR |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 3_1:-90345479 | Msa0386580:intron |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 3_1:-90345595 | Msa0386580:three_prime_UTR |
| AAGGGTGGCATGCTTCCTCT+TGG | 0.440256 | 3_1:-90347179 | Msa0386580:three_prime_UTR |
| ATACTTTCATCCTTTGATGT+TGG | 0.444955 | 3_1:-90345879 | Msa0386580:three_prime_UTR |
| GGAGATAATAGTAGTCAATC+AGG | 0.447697 | 3_1:-90347016 | Msa0386580:three_prime_UTR |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 3_1:+90345586 | None:intergenic |
| GTTATTGGAGGTGGTCCTAC+AGG | 0.464952 | 3_1:-90346104 | Msa0386580:three_prime_UTR |
| TGGCGGTTTCAGGAGCATAT+CGG | 0.472695 | 3_1:-90346939 | Msa0386580:three_prime_UTR |
| CCAATAATAATGTAAGTTCA+AGG | 0.474152 | 3_1:+90346816 | None:intergenic |
| GTATTAATGGTAATAGTGGT+TGG | 0.479981 | 3_1:-90347272 | Msa0386580:three_prime_UTR |
| GCCACAAGGTTCCCGTTGAT+AGG | 0.484070 | 3_1:+90346759 | None:intergenic |
| GATCTGAATGGCTCTCAGTC+AGG | 0.486961 | 3_1:-90346971 | Msa0386580:three_prime_UTR |
| GTGAAAGATGTCTTTGCACT+TGG | 0.487542 | 3_1:-90345437 | Msa0386580:three_prime_UTR |
| ATGGGTATTAATGGTAATAG+TGG | 0.493469 | 3_1:-90347276 | Msa0386580:three_prime_UTR |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 3_1:+90345652 | None:intergenic |
| GATGGTTCAGAAATTCACTT+TGG | 0.497055 | 3_1:-90348370 | Msa0386580:CDS |
| ATTGAGGTCAACCTATCAAC+GGG | 0.497094 | 3_1:-90346770 | Msa0386580:three_prime_UTR |
| TTAGCTAAAGTTGGAAGCAC+TGG | 0.504951 | 3_1:+90345380 | None:intergenic |
| ATGCATAGTACTACAGAAGT+AGG | 0.508315 | 3_1:-90345164 | Msa0386580:three_prime_UTR |
| TACATTATTATTGGAGAAGG+TGG | 0.508624 | 3_1:-90346807 | Msa0386580:three_prime_UTR |
| CTGCATTGTGTAGTTATTGG+AGG | 0.508933 | 3_1:-90346116 | Msa0386580:three_prime_UTR |
| GAAAGAGGTTAAGTTATCAA+AGG | 0.511514 | 3_1:-90348247 | Msa0386580:CDS |
| TGAAAGATGTCTTTGCACTT+GGG | 0.511531 | 3_1:-90345436 | Msa0386580:three_prime_UTR |
| TAATAGCTTACAAATTATTG+AGG | 0.512738 | 3_1:+90346724 | None:intergenic |
| GGAGGAACTTATTTCTGTCA+TGG | 0.518018 | 3_1:-90348415 | Msa0386580:CDS |
| CCTACAGGAGTGGAATTTAG+TGG | 0.520988 | 3_1:-90346089 | Msa0386580:three_prime_UTR |
| CTGCTGAAGGCCAACATCAA+AGG | 0.523080 | 3_1:+90345869 | None:intergenic |
| AAAGCAAATGCTGTTGAAAG+AGG | 0.523700 | 3_1:-90348262 | Msa0386580:CDS |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 3_1:-90346006 | Msa0386580:intron |
| GGTTATGGAGTTGTCTATTG+AGG | 0.531389 | 3_1:-90346786 | Msa0386580:three_prime_UTR |
| TCGAATAATCATCCGCAGAA+TGG | 0.533606 | 3_1:-90347101 | Msa0386580:three_prime_UTR |
| GTTCATTATAATCATCCTTG+TGG | 0.534067 | 3_1:-90347246 | Msa0386580:three_prime_UTR |
| CATTGTGTAGTTATTGGAGG+TGG | 0.534574 | 3_1:-90346113 | Msa0386580:three_prime_UTR |
| AGTCTGGAGTTTATCTTATG+CGG | 0.535484 | 3_1:-90345732 | Msa0386580:three_prime_UTR |
| TCTTATGCGGGGTGTTGTGA+AGG | 0.536832 | 3_1:-90345719 | Msa0386580:three_prime_UTR |
| TAGTGACGGCGATTCTCGAA+AGG | 0.537864 | 3_1:-90347059 | Msa0386580:three_prime_UTR |
| CCACTAAATTCCACTCCTGT+AGG | 0.546000 | 3_1:+90346089 | None:intergenic |
| ACTTACATTATTATTGGAGA+AGG | 0.554262 | 3_1:-90346810 | Msa0386580:three_prime_UTR |
| GAAAGATGTCTTTGCACTTG+GGG | 0.560397 | 3_1:-90345435 | Msa0386580:three_prime_UTR |
| AAAGAAGTCTAGAAGAGGCA+AGG | 0.560414 | 3_1:-90347198 | Msa0386580:three_prime_UTR |
| TTAAGAAAGAAGTCTAGAAG+AGG | 0.564848 | 3_1:-90347203 | Msa0386580:three_prime_UTR |
| ACCAGAACACGGCGATGACG+CGG | 0.568873 | 3_1:+90346889 | None:intergenic |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 3_1:-90345475 | Msa0386580:intron |
| GGTTTGTTGCATACTGCTGA+AGG | 0.571993 | 3_1:+90345856 | None:intergenic |
| AAGAAGTCTAGAAGAGGCAA+GGG | 0.574521 | 3_1:-90347197 | Msa0386580:three_prime_UTR |
| AGACATCTTGCAGCAGAACT+CGG | 0.574753 | 3_1:-90348468 | Msa0386580:CDS |
| TATGCATTTGGATGCTACAA+AGG | 0.577556 | 3_1:-90348436 | Msa0386580:CDS |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 3_1:-90345588 | Msa0386580:intron |
| AGGACAGTATAGATTAATGT+CGG | 0.589255 | 3_1:+90345280 | None:intergenic |
| AGCTTCACATACCTTCCACC+TGG | 0.590033 | 3_1:+90345577 | None:intergenic |
| TTCTGTCATGGAGAACAAAG+AGG | 0.590110 | 3_1:-90348403 | Msa0386580:CDS |
| AAGTCTAGAAGAGGCAAGGG+TGG | 0.590573 | 3_1:-90347194 | Msa0386580:three_prime_UTR |
| TTGAACGATAAGTTTAGTGA+CGG | 0.603921 | 3_1:-90347073 | Msa0386580:three_prime_UTR |
| AAATGGAGAGAAGCTTCAGA+AGG | 0.605319 | 3_1:-90348192 | Msa0386580:CDS |
| CGTTTAGAGAAAGATCTGAA+TGG | 0.607298 | 3_1:-90346983 | Msa0386580:three_prime_UTR |
| CAAACCAGTGGCCCCAACCA+AGG | 0.615388 | 3_1:+90346849 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 3_1:+90345630 | None:intergenic |
| TATTGAGGTCAACCTATCAA+CGG | 0.615709 | 3_1:-90346771 | Msa0386580:three_prime_UTR |
| TGGAGGTGGTCCTACAGGAG+TGG | 0.621881 | 3_1:-90346099 | Msa0386580:three_prime_UTR |
| TGCAACAAACCTCTTACCAA+AGG | 0.623366 | 3_1:-90345844 | Msa0386580:intron |
| GCATTTGGATGCTACAAAGG+AGG | 0.627843 | 3_1:-90348433 | Msa0386580:CDS |
| GGAGTTTCTTAACGGCCACA+AGG | 0.628154 | 3_1:+90346745 | None:intergenic |
| TATGCGGGGTGTTGTGAAGG+AGG | 0.631625 | 3_1:-90345716 | Msa0386580:three_prime_UTR |
| GGAGATTGCAAAATTTCACA+AGG | 0.637872 | 3_1:-90348349 | Msa0386580:CDS |
| ACCTATCAACGGGAACCTTG+TGG | 0.638382 | 3_1:-90346760 | Msa0386580:three_prime_UTR |
| TCTGGAGTTTATCTTATGCG+GGG | 0.644473 | 3_1:-90345730 | Msa0386580:three_prime_UTR |
| CGTTCAAAAGAACCATTCTG+CGG | 0.647480 | 3_1:+90347089 | None:intergenic |
| ATAGATAGAATATGGCCAAG+AGG | 0.665254 | 3_1:+90347164 | None:intergenic |
| GGTCCCTTAACGCAAACCAG+TGG | 0.682113 | 3_1:+90346837 | None:intergenic |
| AATTCAGGCAGACCAGAACA+CGG | 0.683900 | 3_1:+90346878 | None:intergenic |
| CAGTCAGGTGACGATAATGG+CGG | 0.689927 | 3_1:-90346956 | Msa0386580:three_prime_UTR |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 3_1:-90345592 | Msa0386580:three_prime_UTR |
| GACATATTGATAGCACCACA+AGG | 0.695167 | 3_1:+90347231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAAACTAAAAAATAA+AGG | + | chr3_1:90348067-90348086 | None:intergenic | 10.0% |
| !!! | CTTAAAATTTGAAATATGAT+TGG | - | chr3_1:90345270-90345289 | Msa0386580:three_prime_UTR | 15.0% |
| !! | AGTAACAAATAATTGATTAA+TGG | - | chr3_1:90346764-90346783 | Msa0386580:three_prime_UTR | 15.0% |
| !! | AAGAAAATTAAATGAAATTC+TGG | - | chr3_1:90346802-90346821 | Msa0386580:three_prime_UTR | 15.0% |
| !! | ATGTGTTTAAATGAAATTAA+AGG | - | chr3_1:90346851-90346870 | Msa0386580:three_prime_UTR | 15.0% |
| !! | TGTGTTTAAATGAAATTAAA+GGG | - | chr3_1:90346852-90346871 | Msa0386580:three_prime_UTR | 15.0% |
| !! | TATATATCATGATCAATAAT+AGG | + | chr3_1:90348304-90348323 | None:intergenic | 15.0% |
| !! | TTATGAAAAATTAAACACAA+TGG | + | chr3_1:90348830-90348849 | None:intergenic | 15.0% |
| !!! | GTGTTTAATTTTTCATAATT+AGG | - | chr3_1:90348832-90348851 | Msa0386580:intron | 15.0% |
| !!! | GTTAAAAGAGTTTACTTTTT+AGG | + | chr3_1:90345185-90345204 | None:intergenic | 20.0% |
| !!! | AACGACATTCATAAAAATTT+TGG | - | chr3_1:90345246-90345265 | Msa0386580:three_prime_UTR | 20.0% |
| !! | TGGTACAAAAACAAATTTAT+GGG | + | chr3_1:90345830-90345849 | None:intergenic | 20.0% |
| !! | TTGGTACAAAAACAAATTTA+TGG | + | chr3_1:90345831-90345850 | None:intergenic | 20.0% |
| !! | AAATCATTGAAAACTAAATG+AGG | + | chr3_1:90345990-90346009 | None:intergenic | 20.0% |
| !! | TATATTAAAATCATGTCCTA+TGG | - | chr3_1:90346187-90346206 | Msa0386580:intron | 20.0% |
| !! | ACAAATAATTGATTAATGGT+AGG | - | chr3_1:90346768-90346787 | Msa0386580:three_prime_UTR | 20.0% |
| !!! | GTAGAGTTTGTTTTTTAAAA+TGG | - | chr3_1:90347084-90347103 | Msa0386580:three_prime_UTR | 20.0% |
| !! | TTTATTTGTCAACAACAAAA+TGG | - | chr3_1:90347388-90347407 | Msa0386580:intron | 20.0% |
| !!! | TCAAAGAAAACAAATGTTTT+TGG | - | chr3_1:90347434-90347453 | Msa0386580:intron | 20.0% |
| !! | TAATAGCTTACAAATTATTG+AGG | + | chr3_1:90348021-90348040 | None:intergenic | 20.0% |
| !!! | TTATGAACCAAGTTTTATAA+CGG | - | chr3_1:90348085-90348104 | Msa0386580:intron | 20.0% |
| !! | AATGTATGATATTGACAAAT+AGG | + | chr3_1:90348149-90348168 | None:intergenic | 20.0% |
| !!! | GTCATAAACTATTTGTTTTT+TGG | + | chr3_1:90348197-90348216 | None:intergenic | 20.0% |
| !!! | TATGACAAGTTTTAAATTGA+AGG | - | chr3_1:90348211-90348230 | Msa0386580:CDS | 20.0% |
| !! | AATGTAAATTTGACTATTGA+AGG | + | chr3_1:90348327-90348346 | None:intergenic | 20.0% |
| !! | AAAAATTGACACACATATAA+GGG | + | chr3_1:90348354-90348373 | None:intergenic | 20.0% |
| !! | AAAAAATTGACACACATATA+AGG | + | chr3_1:90348355-90348374 | None:intergenic | 20.0% |
| !!! | ATCACTCAAAATTATCTTTT+GGG | + | chr3_1:90349058-90349077 | None:intergenic | 20.0% |
| !!! | TATCACTCAAAATTATCTTT+TGG | + | chr3_1:90349059-90349078 | None:intergenic | 20.0% |
| !! | ACAAAACATCATAGATAATA+AGG | + | chr3_1:90349394-90349413 | None:intergenic | 20.0% |
| !!! | GATTTTTTACATTGGATTAA+AGG | + | chr3_1:90349485-90349504 | None:intergenic | 20.0% |
| !!! | TATATTGGGATTTTTTACAT+TGG | + | chr3_1:90349493-90349512 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATCCCAATAT+AGG | - | chr3_1:90349492-90349511 | Msa0386580:intron | 20.0% |
| !! | ATGTAAAAAATCCCAATATA+GGG | - | chr3_1:90349493-90349512 | Msa0386580:intron | 20.0% |
| ! | CATGTTTATAACTCATTCTA+GGG | - | chr3_1:90345139-90345158 | Msa0386580:three_prime_UTR | 25.0% |
| !!! | GTTTACTTTTTAGGTTGAAA+TGG | + | chr3_1:90345176-90345195 | None:intergenic | 25.0% |
| !!! | AACAATGCTAGTTTAACTTT+TGG | + | chr3_1:90345345-90345364 | None:intergenic | 25.0% |
| ! | AAAAGTTAAACTAGCATTGT+TGG | - | chr3_1:90345344-90345363 | Msa0386580:three_prime_UTR | 25.0% |
| ! | TGTATAGCTTTCAAAATACA+AGG | - | chr3_1:90345432-90345451 | Msa0386580:three_prime_UTR | 25.0% |
| ! | TATCAAAATATTGTCAAGGA+AGG | - | chr3_1:90345531-90345550 | Msa0386580:intron | 25.0% |
| ! | AAAAACAAATTTATGGGAGA+GGG | + | chr3_1:90345824-90345843 | None:intergenic | 25.0% |
| ! | CGTTAGTAATTTCAATCTTT+AGG | + | chr3_1:90346090-90346109 | None:intergenic | 25.0% |
| !!! | CGTTTTTTACTATGATACTT+TGG | - | chr3_1:90346108-90346127 | Msa0386580:three_prime_UTR | 25.0% |
| ! | TTAAGTTATCAAAGGTTAGA+AGG | - | chr3_1:90346503-90346522 | Msa0386580:intron | 25.0% |
| ! | AGAAAATTAAGAGAAATACC+AGG | + | chr3_1:90346631-90346650 | None:intergenic | 25.0% |
| !!! | AAACTTTTTCAATTCTGTGA+AGG | + | chr3_1:90346725-90346744 | None:intergenic | 25.0% |
| ! | TTAAATACCTAAATTCAGCA+AGG | + | chr3_1:90346949-90346968 | None:intergenic | 25.0% |
| ! | AATGAATATTACTGATCCTT+CGG | + | chr3_1:90347253-90347272 | None:intergenic | 25.0% |
| !! | ATTGTTTGTGTAAATTTGCT+TGG | - | chr3_1:90347288-90347307 | Msa0386580:three_prime_UTR | 25.0% |
| ! | ATCAGAGTTGAAAAATTAGA+AGG | + | chr3_1:90347359-90347378 | None:intergenic | 25.0% |
| !!! | CTTCTGAAATAGATAGAATA+TGG | + | chr3_1:90347589-90347608 | None:intergenic | 25.0% |
| !!! | GTTTTGATTCAAACAAAGAA+TGG | - | chr3_1:90347705-90347724 | Msa0386580:intron | 25.0% |
| ! | CCAATAATAATGTAAGTTCA+AGG | + | chr3_1:90347929-90347948 | None:intergenic | 25.0% |
| ! | CCTTGAACTTACATTATTAT+TGG | - | chr3_1:90347926-90347945 | Msa0386580:intron | 25.0% |
| ! | ACTTACATTATTATTGGAGA+AGG | - | chr3_1:90347932-90347951 | Msa0386580:intron | 25.0% |
| ! | ATTATTGAGGAGTTTCTTAA+CGG | + | chr3_1:90348008-90348027 | None:intergenic | 25.0% |
| !!! | CATTAGTCTTATAGAATCAT+GGG | - | chr3_1:90348266-90348285 | Msa0386580:CDS | 25.0% |
| !!! | ATTAGTCTTATAGAATCATG+GGG | - | chr3_1:90348267-90348286 | Msa0386580:CDS | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr3_1:90348498-90348517 | None:intergenic | 25.0% |
| !!! | TGTCATTATTTTTTTGCCAA+AGG | - | chr3_1:90348544-90348563 | Msa0386580:intron | 25.0% |
| !! | AAAACGTTTTTCATTATGAC+AGG | - | chr3_1:90348575-90348594 | Msa0386580:intron | 25.0% |
| ! | ATATACGATCAAAACTCAAA+AGG | + | chr3_1:90348928-90348947 | None:intergenic | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr3_1:90348994-90349013 | Msa0386580:intron | 25.0% |
| !! | TCACTCAAAATTATCTTTTG+GGG | + | chr3_1:90349057-90349076 | None:intergenic | 25.0% |
| ! | TTAATACAGTACCCTATATT+GGG | + | chr3_1:90349507-90349526 | None:intergenic | 25.0% |
| ! | ATTAATACAGTACCCTATAT+TGG | + | chr3_1:90349508-90349527 | None:intergenic | 25.0% |
| ! | TTAATATGCATTACTTTGAC+AGG | - | chr3_1:90349523-90349542 | Msa0386580:intron | 25.0% |
| ! | AGCTTCTATTTCATTCTATT+TGG | - | chr3_1:90349605-90349624 | Msa0386580:intron | 25.0% |
| GCATGTTTATAACTCATTCT+AGG | - | chr3_1:90345138-90345157 | Msa0386580:three_prime_UTR | 30.0% | |
| TAACCATGTAGAGTTTAATG+AGG | - | chr3_1:90345201-90345220 | Msa0386580:three_prime_UTR | 30.0% | |
| AATCCTCATTAAACTCTACA+TGG | + | chr3_1:90345207-90345226 | None:intergenic | 30.0% | |
| GCTAAGATAAGCAAAATTTC+AGG | - | chr3_1:90345396-90345415 | Msa0386580:three_prime_UTR | 30.0% | |
| ACAAAGCAACAAAATCAAAG+AGG | + | chr3_1:90345458-90345477 | None:intergenic | 30.0% | |
| ! | CTTTGTTTCTTTGATGTGTT+GGG | - | chr3_1:90345472-90345491 | Msa0386580:three_prime_UTR | 30.0% |
| CTTCTTGTCATCAATTACTT+CGG | + | chr3_1:90345509-90345528 | None:intergenic | 30.0% | |
| ! | GAAGTAATTGATGACAAGAA+GGG | - | chr3_1:90345508-90345527 | Msa0386580:intron | 30.0% |
| ! | AGGGTATCAAAATATTGTCA+AGG | - | chr3_1:90345527-90345546 | Msa0386580:intron | 30.0% |
| ATCATCATTGATGCTAATGA+AGG | - | chr3_1:90345599-90345618 | Msa0386580:three_prime_UTR | 30.0% | |
| ATCTTTGCAGTGAAAGTAAT+TGG | - | chr3_1:90345683-90345702 | Msa0386580:three_prime_UTR | 30.0% | |
| !! | TAGCACTGTATTTTTGAAGA+AGG | - | chr3_1:90345718-90345737 | Msa0386580:three_prime_UTR | 30.0% |
| !! | AGCACTGTATTTTTGAAGAA+GGG | - | chr3_1:90345719-90345738 | Msa0386580:three_prime_UTR | 30.0% |
| CAAAAACAAATTTATGGGAG+AGG | + | chr3_1:90345825-90345844 | None:intergenic | 30.0% | |
| TACTTTGACAATTTGTGTGT+TGG | - | chr3_1:90346162-90346181 | Msa0386580:intron | 30.0% | |
| AGAAGAATGTTATTGACCAT+AGG | + | chr3_1:90346206-90346225 | None:intergenic | 30.0% | |
| AATAACATTCTTCTGATCTC+AGG | - | chr3_1:90346212-90346231 | Msa0386580:intron | 30.0% | |
| TGCAAAATTTCACAAGGATT+TGG | - | chr3_1:90346399-90346418 | Msa0386580:intron | 30.0% | |
| ! | AAATTTTGTCAGCAATGTTG+AGG | - | chr3_1:90346434-90346453 | Msa0386580:intron | 30.0% |
| GAAAGAGGTTAAGTTATCAA+AGG | - | chr3_1:90346495-90346514 | Msa0386580:intron | 30.0% | |
| AACACATTCCTTTAAATTCC+TGG | - | chr3_1:90346610-90346629 | Msa0386580:intron | 30.0% | |
| GAGAAATACCAGGAATTTAA+AGG | + | chr3_1:90346621-90346640 | None:intergenic | 30.0% | |
| TATGCTTAATTGTGTCATCT+TGG | - | chr3_1:90346921-90346940 | Msa0386580:three_prime_UTR | 30.0% | |
| TAAGACATATCATAGACCAA+AGG | + | chr3_1:90347019-90347038 | None:intergenic | 30.0% | |
| TTTGGTCTATGATATGTCTT+AGG | - | chr3_1:90347018-90347037 | Msa0386580:three_prime_UTR | 30.0% | |
| TTGGTCTATGATATGTCTTA+GGG | - | chr3_1:90347019-90347038 | Msa0386580:three_prime_UTR | 30.0% | |
| !! | CGATTTGCTGTATAAAGTTT+CGG | - | chr3_1:90347046-90347065 | Msa0386580:three_prime_UTR | 30.0% |
| !! | TGCTCTTTGTGTGTTTTATT+AGG | - | chr3_1:90347182-90347201 | Msa0386580:three_prime_UTR | 30.0% |
| !! | GTGTTTTATTAGGTGTCAAT+TGG | - | chr3_1:90347192-90347211 | Msa0386580:three_prime_UTR | 30.0% |
| TGGAAACATTATGCTAGAAA+TGG | - | chr3_1:90347212-90347231 | Msa0386580:three_prime_UTR | 30.0% | |
| ACATTATGCTAGAAATGGAT+AGG | - | chr3_1:90347217-90347236 | Msa0386580:three_prime_UTR | 30.0% | |
| ATGAATATTACTGATCCTTC+GGG | + | chr3_1:90347252-90347271 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTGGATTGAAAGCA+TGG | - | chr3_1:90347447-90347466 | Msa0386580:intron | 30.0% |
| !!! | TGTTTTTGGATTGAAAGCAT+GGG | - | chr3_1:90347448-90347467 | Msa0386580:intron | 30.0% |
| ! | ATTGAAAGCATGGGTATTAA+TGG | - | chr3_1:90347457-90347476 | Msa0386580:intron | 30.0% |
| ATGGGTATTAATGGTAATAG+TGG | - | chr3_1:90347466-90347485 | Msa0386580:intron | 30.0% | |
| GTATTAATGGTAATAGTGGT+TGG | - | chr3_1:90347470-90347489 | Msa0386580:intron | 30.0% | |
| GTTCATTATAATCATCCTTG+TGG | - | chr3_1:90347496-90347515 | Msa0386580:intron | 30.0% | |
| TTAAGAAAGAAGTCTAGAAG+AGG | - | chr3_1:90347539-90347558 | Msa0386580:intron | 30.0% | |
| TTGAACGATAAGTTTAGTGA+CGG | - | chr3_1:90347669-90347688 | Msa0386580:intron | 30.0% | |
| TACATTATTATTGGAGAAGG+TGG | - | chr3_1:90347935-90347954 | Msa0386580:intron | 30.0% | |
| ATTCACACCGTTATAAAACT+TGG | + | chr3_1:90348095-90348114 | None:intergenic | 30.0% | |
| CCATGATTCTATAAGACTAA+TGG | + | chr3_1:90348268-90348287 | None:intergenic | 30.0% | |
| !! | CCATTAGTCTTATAGAATCA+TGG | - | chr3_1:90348265-90348284 | Msa0386580:CDS | 30.0% |
| TATAGAATCATGGGGATATA+AGG | - | chr3_1:90348275-90348294 | Msa0386580:CDS | 30.0% | |
| TTGATGCATACAAAGATCTT+TGG | + | chr3_1:90348452-90348471 | None:intergenic | 30.0% | |
| CTTTGTATGCATCAAATGAT+TGG | - | chr3_1:90348457-90348476 | Msa0386580:CDS | 30.0% | |
| ATACTTTCATCCTTTGATGT+TGG | - | chr3_1:90348863-90348882 | Msa0386580:intron | 30.0% | |
| AAACTCAAAAGGTTTACCTT+TGG | + | chr3_1:90348917-90348936 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr3_1:90349129-90349148 | None:intergenic | 30.0% |
| GTTGTTGAATGATACAGAAT+TGG | - | chr3_1:90349254-90349273 | Msa0386580:intron | 30.0% | |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr3_1:90349403-90349422 | Msa0386580:intron | 30.0% |
| AGGACAGTATAGATTAATGT+CGG | + | chr3_1:90349465-90349484 | None:intergenic | 30.0% | |
| ! | GGTGTAAATTTTATTGCGTG+AGG | - | chr3_1:90345291-90345310 | Msa0386580:three_prime_UTR | 35.0% |
| TTAAACTAGCATTGTTGGCA+AGG | - | chr3_1:90345349-90345368 | Msa0386580:three_prime_UTR | 35.0% | |
| !! | GCTTTGTTTCTTTGATGTGT+TGG | - | chr3_1:90345471-90345490 | Msa0386580:three_prime_UTR | 35.0% |
| ! | CGAAGTAATTGATGACAAGA+AGG | - | chr3_1:90345507-90345526 | Msa0386580:intron | 35.0% |
| AATATTGTCAAGGAAGGAGA+AGG | - | chr3_1:90345537-90345556 | Msa0386580:intron | 35.0% | |
| TTTACAACAGCTCCATCATT+TGG | + | chr3_1:90345573-90345592 | None:intergenic | 35.0% | |
| ! | AGGCTCTCTTCTTTTCATAA+TGG | - | chr3_1:90345619-90345638 | Msa0386580:three_prime_UTR | 35.0% |
| TTTGAATTCACAAGAGACGA+GGG | - | chr3_1:90345767-90345786 | Msa0386580:intron | 35.0% | |
| !! | AAACATTGACTTTCGTCAGT+TGG | + | chr3_1:90345850-90345869 | None:intergenic | 35.0% |
| AAGAGATTGTACTTCGAACT+TGG | + | chr3_1:90346021-90346040 | None:intergenic | 35.0% | |
| AAGTACAATCTCTTCAACAC+TGG | - | chr3_1:90346027-90346046 | Msa0386580:three_prime_UTR | 35.0% | |
| TATGCATTTGGATGCTACAA+AGG | - | chr3_1:90346306-90346325 | Msa0386580:three_prime_UTR | 35.0% | |
| GATGGTTCAGAAATTCACTT+TGG | - | chr3_1:90346372-90346391 | Msa0386580:intron | 35.0% | |
| GGAGATTGCAAAATTTCACA+AGG | - | chr3_1:90346393-90346412 | Msa0386580:intron | 35.0% | |
| AAAGCAAATGCTGTTGAAAG+AGG | - | chr3_1:90346480-90346499 | Msa0386580:intron | 35.0% | |
| CTGAGCATGAAACAGAAAAA+TGG | - | chr3_1:90346533-90346552 | Msa0386580:intron | 35.0% | |
| AATTCTGTGAAGGTCAAGTA+CGG | + | chr3_1:90346715-90346734 | None:intergenic | 35.0% | |
| ATGAATCCTGATTCATCAGA+TGG | - | chr3_1:90347128-90347147 | Msa0386580:three_prime_UTR | 35.0% | |
| ! | AAAACACACAAAGAGCACAT+TGG | + | chr3_1:90347179-90347198 | None:intergenic | 35.0% |
| ATTTGCTTGGTTGAGAAGTT+TGG | - | chr3_1:90347301-90347320 | Msa0386580:three_prime_UTR | 35.0% | |
| ATGGCATCTGATCTAAATTC+AGG | - | chr3_1:90347407-90347426 | Msa0386580:intron | 35.0% | |
| TGGCATCTGATCTAAATTCA+GGG | - | chr3_1:90347408-90347427 | Msa0386580:intron | 35.0% | |
| ATAGATAGAATATGGCCAAG+AGG | + | chr3_1:90347581-90347600 | None:intergenic | 35.0% | |
| GGAGATAATAGTAGTCAATC+AGG | - | chr3_1:90347726-90347745 | Msa0386580:intron | 35.0% | |
| CGTTTAGAGAAAGATCTGAA+TGG | - | chr3_1:90347759-90347778 | Msa0386580:intron | 35.0% | |
| ATTATTGGAGAAGGTGGTTA+TGG | - | chr3_1:90347941-90347960 | Msa0386580:intron | 35.0% | |
| TATTGAGGTCAACCTATCAA+CGG | - | chr3_1:90347971-90347990 | Msa0386580:intron | 35.0% | |
| AGGCTGCAATGAAACTATTA+AGG | + | chr3_1:90348047-90348066 | None:intergenic | 35.0% | |
| ! | ACTATGTTTGTTGCAGCAAA+AGG | - | chr3_1:90348169-90348188 | Msa0386580:CDS | 35.0% |
| TCATCAATCTTGTGCACTAT+AGG | - | chr3_1:90348374-90348393 | Msa0386580:CDS | 35.0% | |
| AAAGGTTTACCTTTGGTAAG+AGG | + | chr3_1:90348910-90348929 | None:intergenic | 35.0% | |
| ACTTGACAGTTCATCATTGA+AGG | + | chr3_1:90348955-90348974 | None:intergenic | 35.0% | |
| ! | AGTCTGGAGTTTATCTTATG+CGG | - | chr3_1:90349010-90349029 | Msa0386580:intron | 35.0% |
| GATAGAACTGAAGTTCCTTA+TGG | - | chr3_1:90349075-90349094 | Msa0386580:intron | 35.0% | |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr3_1:90349130-90349149 | None:intergenic | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr3_1:90349263-90349282 | Msa0386580:intron | 35.0% |
| TGAAAGATGTCTTTGCACTT+GGG | - | chr3_1:90349306-90349325 | Msa0386580:intron | 35.0% | |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr3_1:90349339-90349358 | Msa0386580:intron | 35.0% |
| !! | ATGTCGGCTTAACTTAGTTT+AGG | + | chr3_1:90349449-90349468 | None:intergenic | 35.0% |
| ATGCATAGTACTACAGAAGT+AGG | - | chr3_1:90349578-90349597 | Msa0386580:intron | 35.0% | |
| CGAACATAAGCGAAAATGCA+AGG | - | chr3_1:90345372-90345391 | Msa0386580:three_prime_UTR | 40.0% | |
| GGATATGAGTGTCCAAATGA+TGG | - | chr3_1:90345558-90345577 | Msa0386580:intron | 40.0% | |
| CACTGCAAAGATGCAAAATG+AGG | + | chr3_1:90345675-90345694 | None:intergenic | 40.0% | |
| !! | GTATTTTTGAAGAAGGGCCA+TGG | - | chr3_1:90345725-90345744 | Msa0386580:three_prime_UTR | 40.0% |
| GTTTGAATTCACAAGAGACG+AGG | - | chr3_1:90345766-90345785 | Msa0386580:intron | 40.0% | |
| AGCTGTAATGACCATGAAGA+AGG | - | chr3_1:90345909-90345928 | Msa0386580:intron | 40.0% | |
| GCTGTAATGACCATGAAGAA+GGG | - | chr3_1:90345910-90345929 | Msa0386580:intron | 40.0% | |
| TACAATCTCTTCAACACTGG+TGG | - | chr3_1:90346030-90346049 | Msa0386580:three_prime_UTR | 40.0% | |
| !! | GGAGGAACTTATTTCTGTCA+TGG | - | chr3_1:90346327-90346346 | Msa0386580:three_prime_UTR | 40.0% |
| TTCTGTCATGGAGAACAAAG+AGG | - | chr3_1:90346339-90346358 | Msa0386580:three_prime_UTR | 40.0% | |
| ! | CAAAGAGGAGTCTGATTTGA+TGG | - | chr3_1:90346354-90346373 | Msa0386580:intron | 40.0% |
| AAATGGAGAGAAGCTTCAGA+AGG | - | chr3_1:90346550-90346569 | Msa0386580:intron | 40.0% | |
| GCATATGAGATGAGATGAGA+TGG | + | chr3_1:90346906-90346925 | None:intergenic | 40.0% | |
| CTTGGAACCTTGCTGAATTT+AGG | - | chr3_1:90346939-90346958 | Msa0386580:three_prime_UTR | 40.0% | |
| AGGTAGCAATGGACAAACTT+TGG | + | chr3_1:90346999-90347018 | None:intergenic | 40.0% | |
| AGTTTGTCCATTGCTACCTT+TGG | - | chr3_1:90347000-90347019 | Msa0386580:three_prime_UTR | 40.0% | |
| TCATAGACCAAAGGTAGCAA+TGG | + | chr3_1:90347010-90347029 | None:intergenic | 40.0% | |
| TCTAGACCATCTGATGAATC+AGG | + | chr3_1:90347137-90347156 | None:intergenic | 40.0% | |
| ! | GACATATTGATAGCACCACA+AGG | + | chr3_1:90347514-90347533 | None:intergenic | 40.0% |
| AAAGAAGTCTAGAAGAGGCA+AGG | - | chr3_1:90347544-90347563 | Msa0386580:intron | 40.0% | |
| AAGAAGTCTAGAAGAGGCAA+GGG | - | chr3_1:90347545-90347564 | Msa0386580:intron | 40.0% | |
| TCGAATAATCATCCGCAGAA+TGG | - | chr3_1:90347641-90347660 | Msa0386580:intron | 40.0% | |
| CGTTCAAAAGAACCATTCTG+CGG | + | chr3_1:90347656-90347675 | None:intergenic | 40.0% | |
| TGAATTCTCTCACCTTGGTT+GGG | - | chr3_1:90347881-90347900 | Msa0386580:intron | 40.0% | |
| GGTTATGGAGTTGTCTATTG+AGG | - | chr3_1:90347956-90347975 | Msa0386580:intron | 40.0% | |
| ATTGAGGTCAACCTATCAAC+GGG | - | chr3_1:90347972-90347991 | Msa0386580:intron | 40.0% | |
| !! | TTCCTGTTTCTAGAGCATCA+TGG | - | chr3_1:90348114-90348133 | Msa0386580:intron | 40.0% |
| ! | AATTGAAGGTGTAGTCATGC+TGG | - | chr3_1:90348225-90348244 | Msa0386580:CDS | 40.0% |
| CAATCTTGTGCACTATAGGT+TGG | - | chr3_1:90348378-90348397 | Msa0386580:CDS | 40.0% | |
| ! | GCACTATAGGTTGGATTACT+TGG | - | chr3_1:90348387-90348406 | Msa0386580:CDS | 40.0% |
| !! | AACGTTTTCAGCTTAGCCTT+TGG | + | chr3_1:90348563-90348582 | None:intergenic | 40.0% |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr3_1:90348623-90348642 | Msa0386580:intron | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr3_1:90348626-90348645 | Msa0386580:intron | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr3_1:90348629-90348648 | Msa0386580:intron | 40.0% | |
| GAGCGCTATACTCATGTTAA+AGG | - | chr3_1:90348710-90348729 | Msa0386580:intron | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr3_1:90348736-90348755 | Msa0386580:intron | 40.0% | |
| ! | GAAGTCTATTTTGTGTGCTG+AGG | - | chr3_1:90348776-90348795 | Msa0386580:intron | 40.0% |
| TGCAACAAACCTCTTACCAA+AGG | - | chr3_1:90348898-90348917 | Msa0386580:intron | 40.0% | |
| TGACAGTTCATCATTGAAGG+TGG | + | chr3_1:90348952-90348971 | None:intergenic | 40.0% | |
| ! | GTCTGGAGTTTATCTTATGC+GGG | - | chr3_1:90349011-90349030 | Msa0386580:intron | 40.0% |
| ! | TCTGGAGTTTATCTTATGCG+GGG | - | chr3_1:90349012-90349031 | Msa0386580:intron | 40.0% |
| TGAAGTTCCTTATGGTCTCT+TGG | - | chr3_1:90349083-90349102 | Msa0386580:intron | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr3_1:90349088-90349107 | Msa0386580:intron | 40.0% | |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr3_1:90349267-90349286 | Msa0386580:intron | 40.0% |
| GTGAAAGATGTCTTTGCACT+TGG | - | chr3_1:90349305-90349324 | Msa0386580:intron | 40.0% | |
| GAAAGATGTCTTTGCACTTG+GGG | - | chr3_1:90349307-90349326 | Msa0386580:intron | 40.0% | |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr3_1:90349335-90349354 | Msa0386580:intron | 40.0% |
| ! | TTAGCTAAAGTTGGAAGCAC+TGG | + | chr3_1:90349365-90349384 | None:intergenic | 40.0% |
| AGGCTAAGCTTAGCTAAAGT+TGG | + | chr3_1:90349374-90349393 | None:intergenic | 40.0% | |
| ACTCTGTTTCATCATCGCCA+TGG | + | chr3_1:90345745-90345764 | None:intergenic | 45.0% | |
| TGAGCAGAGCAAGTGATTGA+TGG | - | chr3_1:90345877-90345896 | Msa0386580:three_prime_UTR | 45.0% | |
| GAGCAGAGCAAGTGATTGAT+GGG | - | chr3_1:90345878-90345897 | Msa0386580:three_prime_UTR | 45.0% | |
| AATGACCATGAAGAAGGGTG+AGG | - | chr3_1:90345915-90345934 | Msa0386580:intron | 45.0% | |
| AGACATCTTGCAGCAGAACT+CGG | - | chr3_1:90346274-90346293 | Msa0386580:intron | 45.0% | |
| GCATTTGGATGCTACAAAGG+AGG | - | chr3_1:90346309-90346328 | Msa0386580:three_prime_UTR | 45.0% | |
| TCTCAGTCAGGTGACGATAA+TGG | - | chr3_1:90347783-90347802 | Msa0386580:intron | 45.0% | |
| !! | TCAGGAGCATATCGGCTTAT+AGG | - | chr3_1:90347811-90347830 | Msa0386580:intron | 45.0% |
| AATTCAGGCAGACCAGAACA+CGG | + | chr3_1:90347867-90347886 | None:intergenic | 45.0% | |
| CAACCAAGGTGAGAGAATTC+AGG | + | chr3_1:90347882-90347901 | None:intergenic | 45.0% | |
| CTGAATTCTCTCACCTTGGT+TGG | - | chr3_1:90347880-90347899 | Msa0386580:intron | 45.0% | |
| GAATTCTCTCACCTTGGTTG+GGG | - | chr3_1:90347882-90347901 | Msa0386580:intron | 45.0% | |
| !! | CACCATGATGCTCTAGAAAC+AGG | + | chr3_1:90348119-90348138 | None:intergenic | 45.0% |
| CCACTAAATTCCACTCCTGT+AGG | + | chr3_1:90348656-90348675 | None:intergenic | 45.0% | |
| CCTACAGGAGTGGAATTTAG+TGG | - | chr3_1:90348653-90348672 | Msa0386580:intron | 45.0% | |
| !! | GGTTTGTTGCATACTGCTGA+AGG | + | chr3_1:90348889-90348908 | None:intergenic | 45.0% |
| GACCAAACCAAGAGACCATA+AGG | + | chr3_1:90349093-90349112 | None:intergenic | 45.0% | |
| TGCTACCTCACCCTTCTTCA+TGG | + | chr3_1:90345923-90345942 | None:intergenic | 50.0% | |
| CGGTCGCACTGTTATGCATT+TGG | - | chr3_1:90346294-90346313 | Msa0386580:intron | 50.0% | |
| !! | GATAGGATTCTGAGACCCGA+AGG | - | chr3_1:90347234-90347253 | Msa0386580:three_prime_UTR | 50.0% |
| AAGTCTAGAAGAGGCAAGGG+TGG | - | chr3_1:90347548-90347567 | Msa0386580:intron | 50.0% | |
| TAGTGACGGCGATTCTCGAA+AGG | - | chr3_1:90347683-90347702 | Msa0386580:intron | 50.0% | |
| GATCTGAATGGCTCTCAGTC+AGG | - | chr3_1:90347771-90347790 | Msa0386580:intron | 50.0% | |
| ! | CAGTCAGGTGACGATAATGG+CGG | - | chr3_1:90347786-90347805 | Msa0386580:intron | 50.0% |
| ! | GTGACGATAATGGCGGTTTC+AGG | - | chr3_1:90347793-90347812 | Msa0386580:intron | 50.0% |
| ! | TGGCGGTTTCAGGAGCATAT+CGG | - | chr3_1:90347803-90347822 | Msa0386580:intron | 50.0% |
| CTGCCTGAATTCTCTCACCT+TGG | - | chr3_1:90347876-90347895 | Msa0386580:intron | 50.0% | |
| ACCTATCAACGGGAACCTTG+TGG | - | chr3_1:90347982-90348001 | Msa0386580:intron | 50.0% | |
| GGAGTTTCTTAACGGCCACA+AGG | + | chr3_1:90348000-90348019 | None:intergenic | 50.0% | |
| GTTATTGGAGGTGGTCCTAC+AGG | - | chr3_1:90348638-90348657 | Msa0386580:intron | 50.0% | |
| CTGCTGAAGGCCAACATCAA+AGG | + | chr3_1:90348876-90348895 | None:intergenic | 50.0% | |
| !! | TCTTATGCGGGGTGTTGTGA+AGG | - | chr3_1:90349023-90349042 | Msa0386580:intron | 50.0% |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr3_1:90349102-90349121 | Msa0386580:intron | 50.0% |
| CTGAATCTTCCAAGCTCTCC+AGG | - | chr3_1:90349147-90349166 | Msa0386580:intron | 50.0% | |
| AATCTTCCAAGCTCTCCAGG+TGG | - | chr3_1:90349150-90349169 | Msa0386580:intron | 50.0% | |
| AGCTTCACATACCTTCCACC+TGG | + | chr3_1:90349168-90349187 | None:intergenic | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr3_1:90349317-90349336 | Msa0386580:intron | 50.0% | |
| AAGGGTGGCATGCTTCCTCT+TGG | - | chr3_1:90347563-90347582 | Msa0386580:intron | 55.0% | |
| !! | GGGCCACTGGTTTGCGTTAA+GGG | - | chr3_1:90347902-90347921 | Msa0386580:intron | 55.0% |
| GGTCCCTTAACGCAAACCAG+TGG | + | chr3_1:90347908-90347927 | None:intergenic | 55.0% | |
| GCCACAAGGTTCCCGTTGAT+AGG | + | chr3_1:90347986-90348005 | None:intergenic | 55.0% | |
| !! | TATGCGGGGTGTTGTGAAGG+AGG | - | chr3_1:90349026-90349045 | Msa0386580:intron | 55.0% |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr3_1:90349096-90349115 | Msa0386580:intron | 55.0% |
| TTCCAAGCTCTCCAGGTGGA+AGG | - | chr3_1:90349154-90349173 | Msa0386580:intron | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | + | chr3_1:90349159-90349178 | None:intergenic | 55.0% | |
| CACGGCGATGACGCGGATAT+AGG | + | chr3_1:90347849-90347868 | None:intergenic | 60.0% | |
| ACCAGAACACGGCGATGACG+CGG | + | chr3_1:90347856-90347875 | None:intergenic | 60.0% | |
| CAAACCAGTGGCCCCAACCA+AGG | + | chr3_1:90347896-90347915 | None:intergenic | 60.0% | |
| !! | GGGGCCACTGGTTTGCGTTA+AGG | - | chr3_1:90347901-90347920 | Msa0386580:intron | 60.0% |
| TGGAGGTGGTCCTACAGGAG+TGG | - | chr3_1:90348643-90348662 | Msa0386580:intron | 60.0% | |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr3_1:90349115-90349134 | None:intergenic | 60.0% | |
| TCCGCGTCATCGCCGTGTTC+TGG | - | chr3_1:90347852-90347871 | Msa0386580:intron | 65.0% | |
| CTCACCTTGGTTGGGGCCAC+TGG | - | chr3_1:90347889-90347908 | Msa0386580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90345109 | 90349655 | 90345109 | ID=Msa0386580;Name=Msa0386580 |
| chr3_1 | mRNA | 90345109 | 90349655 | 90345109 | ID=Msa0386580-mRNA-1;Parent=Msa0386580;Name=Msa0386580-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.85|0.87|0.87|0.42|0.37|8|1449|131 |
| chr3_1 | exon | 90345109 | 90345493 | 90345109 | ID=Msa0386580-mRNA-1:exon:24975;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90345589 | 90345752 | 90345589 | ID=Msa0386580-mRNA-1:exon:24974;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90345845 | 90345910 | 90345845 | ID=Msa0386580-mRNA-1:exon:24973;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90346007 | 90346167 | 90346007 | ID=Msa0386580-mRNA-1:exon:24972;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90346304 | 90346368 | 90346304 | ID=Msa0386580-mRNA-1:exon:24971;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90346735 | 90347335 | 90346735 | ID=Msa0386580-mRNA-1:exon:24970;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90348133 | 90348530 | 90348133 | ID=Msa0386580-mRNA-1:exon:24969;Parent=Msa0386580-mRNA-1 |
| chr3_1 | exon | 90349651 | 90349655 | 90349651 | ID=Msa0386580-mRNA-1:exon:24968;Parent=Msa0386580-mRNA-1 |
| chr3_1 | CDS | 90349651 | 90349655 | 90349651 | ID=Msa0386580-mRNA-1:cds;Parent=Msa0386580-mRNA-1 |
| chr3_1 | CDS | 90348140 | 90348530 | 90348140 | ID=Msa0386580-mRNA-1:cds;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90348133 | 90348139 | 90348133 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90346735 | 90347335 | 90346735 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90346304 | 90346368 | 90346304 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90346007 | 90346167 | 90346007 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90345845 | 90345910 | 90345845 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90345589 | 90345752 | 90345589 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| chr3_1 | three_prime_UTR | 90345109 | 90345493 | 90345109 | ID=Msa0386580-mRNA-1:three_prime_utr;Parent=Msa0386580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
