Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489410 | XP_003598260.1 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.11e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489410 | sp|Q6PBU0|F136A_DANRE | 29.730 | 148 | 85 | 8 | 7 | 147 | 2 | 137 | 9.64e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489410 | G7IYL4 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 5.29e-105 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0489410 | 0.815436 | 9.255691e-52 | -8.615850e-47 |
| Msa0010490 | Msa0489410 | 0.802129 | 6.494790e-49 | -8.615850e-47 |
| Msa0011960 | Msa0489410 | 0.847638 | 1.018737e-59 | -8.615850e-47 |
| Msa0012850 | Msa0489410 | 0.804102 | 2.538267e-49 | -8.615850e-47 |
| Msa0019390 | Msa0489410 | 0.810655 | 1.034743e-50 | -8.615850e-47 |
| Msa0021220 | Msa0489410 | 0.828731 | 7.638327e-55 | -8.615850e-47 |
| Msa0025730 | Msa0489410 | 0.803233 | 3.844137e-49 | -8.615850e-47 |
| Msa0027770 | Msa0489410 | 0.801042 | 1.085014e-48 | -8.615850e-47 |
| Msa0029260 | Msa0489410 | 0.820385 | 7.052457e-53 | -8.615850e-47 |
| Msa0033950 | Msa0489410 | 0.837985 | 3.762977e-57 | -8.615850e-47 |
| Msa0034030 | Msa0489410 | 0.843730 | 1.170562e-58 | -8.615850e-47 |
| Msa0037770 | Msa0489410 | 0.831363 | 1.741500e-55 | -8.615850e-47 |
| Msa0037840 | Msa0489410 | 0.821782 | 3.362779e-53 | -8.615850e-47 |
| Msa0043660 | Msa0489410 | 0.857949 | 1.151277e-62 | -8.615850e-47 |
| Msa0047160 | Msa0489410 | 0.808515 | 2.981811e-50 | -8.615850e-47 |
| Msa0054440 | Msa0489410 | 0.831859 | 1.314799e-55 | -8.615850e-47 |
| Msa0059950 | Msa0489410 | 0.803025 | 4.243950e-49 | -8.615850e-47 |
| Msa0061080 | Msa0489410 | 0.809317 | 2.008731e-50 | -8.615850e-47 |
| Msa0075500 | Msa0489410 | 0.812188 | 4.807306e-51 | -8.615850e-47 |
| Msa0086180 | Msa0489410 | 0.828345 | 9.464575e-55 | -8.615850e-47 |
| Msa0091560 | Msa0489410 | 0.818205 | 2.213323e-52 | -8.615850e-47 |
| Msa0093960 | Msa0489410 | 0.805817 | 1.111216e-49 | -8.615850e-47 |
| Msa0105620 | Msa0489410 | 0.838831 | 2.275709e-57 | -8.615850e-47 |
| Msa0115130 | Msa0489410 | 0.808814 | 2.573974e-50 | -8.615850e-47 |
| Msa0115400 | Msa0489410 | 0.804590 | 2.007690e-49 | -8.615850e-47 |
| Msa0127020 | Msa0489410 | 0.819177 | 1.331802e-52 | -8.615850e-47 |
| Msa0128050 | Msa0489410 | 0.808579 | 2.889842e-50 | -8.615850e-47 |
| Msa0137550 | Msa0489410 | 0.854703 | 1.031727e-61 | -8.615850e-47 |
| Msa0141660 | Msa0489410 | 0.804633 | 1.966745e-49 | -8.615850e-47 |
| Msa0146770 | Msa0489410 | 0.858067 | 1.062054e-62 | -8.615850e-47 |
| Msa0150820 | Msa0489410 | 0.803050 | 4.193181e-49 | -8.615850e-47 |
| Msa0159170 | Msa0489410 | 0.837540 | 4.894545e-57 | -8.615850e-47 |
| Msa0168230 | Msa0489410 | 0.814738 | 1.322273e-51 | -8.615850e-47 |
| Msa0169280 | Msa0489410 | 0.816813 | 4.558250e-52 | -8.615850e-47 |
| Msa0169300 | Msa0489410 | 0.819469 | 1.142915e-52 | -8.615850e-47 |
| Msa0170430 | Msa0489410 | 0.801565 | 8.479610e-49 | -8.615850e-47 |
| Msa0189300 | Msa0489410 | 0.850395 | 1.745452e-60 | -8.615850e-47 |
| Msa0189520 | Msa0489410 | 0.800480 | 1.413143e-48 | -8.615850e-47 |
| Msa0228120 | Msa0489410 | 0.815896 | 7.307629e-52 | -8.615850e-47 |
| Msa0228170 | Msa0489410 | 0.818938 | 1.509628e-52 | -8.615850e-47 |
| Msa0229170 | Msa0489410 | 0.808519 | 2.976618e-50 | -8.615850e-47 |
| Msa0231660 | Msa0489410 | 0.852395 | 4.747633e-61 | -8.615850e-47 |
| Msa0385490 | Msa0489410 | 0.814310 | 1.644741e-51 | -8.615850e-47 |
| Msa0387910 | Msa0489410 | 0.808980 | 2.371782e-50 | -8.615850e-47 |
| Msa0388700 | Msa0489410 | 0.850624 | 1.505102e-60 | -8.615850e-47 |
| Msa0393940 | Msa0489410 | 0.828835 | 7.206829e-55 | -8.615850e-47 |
| Msa0397540 | Msa0489410 | 0.812722 | 3.674866e-51 | -8.615850e-47 |
| Msa0409090 | Msa0489410 | 0.811312 | 7.456267e-51 | -8.615850e-47 |
| Msa0455540 | Msa0489410 | 0.808922 | 2.440558e-50 | -8.615850e-47 |
| Msa0465550 | Msa0489410 | 0.806191 | 9.274327e-50 | -8.615850e-47 |
| Msa0467220 | Msa0489410 | 0.820055 | 8.395398e-53 | -8.615850e-47 |
| Msa0467780 | Msa0489410 | 0.830758 | 2.452529e-55 | -8.615850e-47 |
| Msa0478020 | Msa0489410 | 0.806842 | 6.757495e-50 | -8.615850e-47 |
| Msa0481030 | Msa0489410 | 0.851288 | 9.785853e-61 | -8.615850e-47 |
| Msa0481280 | Msa0489410 | 0.812871 | 3.409312e-51 | -8.615850e-47 |
| Msa0482130 | Msa0489410 | 0.860436 | 2.069119e-63 | -8.615850e-47 |
| Msa0241470 | Msa0489410 | 0.816238 | 6.129407e-52 | -8.615850e-47 |
| Msa0279220 | Msa0489410 | 0.830461 | 2.898138e-55 | -8.615850e-47 |
| Msa0279240 | Msa0489410 | 0.842454 | 2.560158e-58 | -8.615850e-47 |
| Msa0309750 | Msa0489410 | 0.800826 | 1.201274e-48 | -8.615850e-47 |
| Msa0318980 | Msa0489410 | 0.817213 | 3.705870e-52 | -8.615850e-47 |
| Msa0325590 | Msa0489410 | 0.809908 | 1.499848e-50 | -8.615850e-47 |
| Msa0351990 | Msa0489410 | 0.810571 | 1.078737e-50 | -8.615850e-47 |
| Msa0489410 | Msa0500470 | 0.838851 | 2.249082e-57 | -8.615850e-47 |
| Msa0489410 | Msa0502090 | 0.838150 | 3.411543e-57 | -8.615850e-47 |
| Msa0489410 | Msa0514180 | 0.810738 | 9.927396e-51 | -8.615850e-47 |
| Msa0489410 | Msa0542090 | 0.852367 | 4.835271e-61 | -8.615850e-47 |
| Msa0489410 | Msa0542130 | 0.858004 | 1.108879e-62 | -8.615850e-47 |
| Msa0489410 | Msa0554290 | 0.825029 | 5.858267e-54 | -8.615850e-47 |
| Msa0489410 | Msa0555450 | 0.828658 | 7.954809e-55 | -8.615850e-47 |
| Msa0489410 | Msa0562940 | 0.801234 | 9.914536e-49 | -8.615850e-47 |
| Msa0489410 | Msa0581280 | 0.845156 | 4.840166e-59 | -8.615850e-47 |
| Msa0489410 | Msa0601150 | 0.827118 | 1.866108e-54 | -8.615850e-47 |
| Msa0489410 | Msa0603670 | 0.801929 | 7.138852e-49 | -8.615850e-47 |
| Msa0489410 | Msa0605000 | 0.855612 | 5.612875e-62 | -8.615850e-47 |
| Msa0489410 | Msa0610130 | 0.816857 | 4.453798e-52 | -8.615850e-47 |
| Msa0489410 | Msa0610180 | 0.811437 | 7.005803e-51 | -8.615850e-47 |
| Msa0489410 | Msa0612390 | 0.809932 | 1.481517e-50 | -8.615850e-47 |
| Msa0489410 | Msa0618930 | 0.804890 | 1.738225e-49 | -8.615850e-47 |
| Msa0489410 | Msa0631350 | 0.803493 | 3.395559e-49 | -8.615850e-47 |
| Msa0489410 | Msa0643320 | 0.801239 | 9.891864e-49 | -8.615850e-47 |
| Msa0489410 | Msa0647500 | 0.818563 | 1.836026e-52 | -8.615850e-47 |
| Msa0489410 | Msa0661210 | 0.804205 | 2.416084e-49 | -8.615850e-47 |
| Msa0489410 | Msa0683140 | 0.808480 | 3.034430e-50 | -8.615850e-47 |
| Msa0489410 | Msa0685140 | 0.854270 | 1.376524e-61 | -8.615850e-47 |
| Msa0489410 | Msa0689260 | 0.823210 | 1.565649e-53 | -8.615850e-47 |
| Msa0489410 | Msa0691290 | 0.803213 | 3.880153e-49 | -8.615850e-47 |
| Msa0489410 | Msa0691900 | 0.806669 | 7.353604e-50 | -8.615850e-47 |
| Msa0489410 | Msa0692830 | 0.804504 | 2.092767e-49 | -8.615850e-47 |
| Msa0489410 | Msa0698800 | 0.817221 | 3.689361e-52 | -8.615850e-47 |
| Msa0489410 | Msa0703910 | 0.822249 | 2.621268e-53 | -8.615850e-47 |
| Msa0489410 | Msa0709040 | 0.800484 | 1.410293e-48 | -8.615850e-47 |
| Msa0489410 | Msa0711780 | 0.825166 | 5.435876e-54 | -8.615850e-47 |
| Msa0489410 | Msa0715650 | 0.845779 | 3.282978e-59 | -8.615850e-47 |
| Msa0489410 | Msa0715700 | 0.800053 | 1.726023e-48 | -8.615850e-47 |
| Msa0489410 | Msa0719420 | 0.834302 | 3.242991e-56 | -8.615850e-47 |
| Msa0489410 | Msa0719610 | 0.847193 | 1.350094e-59 | -8.615850e-47 |
| Msa0489410 | Msa0753140 | 0.806805 | 6.881054e-50 | -8.615850e-47 |
| Msa0489410 | Msa0763330 | 0.845384 | 4.200669e-59 | -8.615850e-47 |
| Msa0489410 | Msa0772480 | 0.846136 | 2.624557e-59 | -8.615850e-47 |
| Msa0489410 | Msa0783960 | 0.800190 | 1.618746e-48 | -8.615850e-47 |
| Msa0489410 | Msa0789680 | 0.835241 | 1.881574e-56 | -8.615850e-47 |
| Msa0489410 | Msa0793390 | 0.816942 | 4.262801e-52 | -8.615850e-47 |
| Msa0489410 | Msa0794670 | 0.828942 | 6.790749e-55 | -8.615850e-47 |
| Msa0489410 | Msa0795820 | 0.821233 | 4.502446e-53 | -8.615850e-47 |
| Msa0489410 | Msa0798440 | 0.855957 | 4.450158e-62 | -8.615850e-47 |
| Msa0489410 | Msa0802410 | 0.831573 | 1.545939e-55 | -8.615850e-47 |
| Msa0489410 | Msa0819060 | 0.803636 | 3.171760e-49 | -8.615850e-47 |
| Msa0489410 | Msa0827280 | 0.819901 | 9.104127e-53 | -8.615850e-47 |
| Msa0489410 | Msa0830540 | 0.858250 | 9.370355e-63 | -8.615850e-47 |
| Msa0489410 | Msa0859180 | 0.812629 | 3.851342e-51 | -8.615850e-47 |
| Msa0489410 | Msa0867120 | 0.831687 | 1.449331e-55 | -8.615850e-47 |
| Msa0489410 | Msa0876810 | 0.801912 | 7.196245e-49 | -8.615850e-47 |
| Msa0489410 | Msa0880730 | 0.815100 | 1.098911e-51 | -8.615850e-47 |
| Msa0489410 | Msa0887250 | 0.811613 | 6.413247e-51 | -8.615850e-47 |
| Msa0489410 | Msa0901470 | 0.811224 | 7.791943e-51 | -8.615850e-47 |
| Msa0489410 | Msa0909110 | 0.802981 | 4.333540e-49 | -8.615850e-47 |
| Msa0489410 | Msa0925770 | 0.835960 | 1.237815e-56 | -8.615850e-47 |
| Msa0489410 | Msa0945440 | 0.847408 | 1.178890e-59 | -8.615850e-47 |
| Msa0489410 | Msa0970030 | 0.826459 | 2.681172e-54 | -8.615850e-47 |
| Msa0489410 | Msa0970530 | 0.819298 | 1.249736e-52 | -8.615850e-47 |
| Msa0489410 | Msa0987370 | 0.830449 | 2.919097e-55 | -8.615850e-47 |
| Msa0489410 | Msa0989540 | 0.824495 | 7.824696e-54 | -8.615850e-47 |
| Msa0489410 | Msa1001370 | 0.801194 | 1.010000e-48 | -8.615850e-47 |
| Msa0489410 | Msa1024750 | 0.804742 | 1.866312e-49 | -8.615850e-47 |
| Msa0489410 | Msa1055680 | 0.805543 | 1.269158e-49 | -8.615850e-47 |
| Msa0489410 | Msa1077030 | 0.826740 | 2.297986e-54 | -8.615850e-47 |
| Msa0489410 | Msa1082250 | 0.808501 | 3.002629e-50 | -8.615850e-47 |
| Msa0489410 | Msa1088290 | 0.815481 | 9.042889e-52 | -8.615850e-47 |
| Msa0489410 | Msa1089320 | 0.821540 | 3.823391e-53 | -8.615850e-47 |
| Msa0489410 | Msa1091940 | 0.813198 | 2.890005e-51 | -8.615850e-47 |
| Msa0489410 | Msa1128570 | 0.807622 | 4.619724e-50 | -8.615850e-47 |
| Msa0489410 | Msa1133400 | 0.814439 | 1.539519e-51 | -8.615850e-47 |
| Msa0489410 | Msa1144040 | 0.806253 | 9.000536e-50 | -8.615850e-47 |
| Msa0489410 | Msa1160590 | 0.856361 | 3.389048e-62 | -8.615850e-47 |
| Msa0489410 | Msa1176710 | 0.817962 | 2.512125e-52 | -8.615850e-47 |
| Msa0489410 | Msa1181250 | 0.821523 | 3.858868e-53 | -8.615850e-47 |
| Msa0489410 | Msa1181330 | 0.822189 | 2.705574e-53 | -8.615850e-47 |
| Msa0489410 | Msa1197320 | 0.805835 | 1.101602e-49 | -8.615850e-47 |
| Msa0489410 | Msa1208880 | 0.807554 | 4.776146e-50 | -8.615850e-47 |
| Msa0489410 | Msa1209200 | 0.837511 | 4.979196e-57 | -8.615850e-47 |
| Msa0489410 | Msa1209260 | 0.864455 | 1.201560e-64 | -8.615850e-47 |
| Msa0489410 | Msa1209760 | 0.833640 | 4.747280e-56 | -8.615850e-47 |
| Msa0489410 | Msa1214120 | 0.837552 | 4.859854e-57 | -8.615850e-47 |
| Msa0489410 | Msa1218500 | 0.825079 | 5.699415e-54 | -8.615850e-47 |
| Msa0489410 | Msa1219170 | 0.806192 | 9.269980e-50 | -8.615850e-47 |
| Msa0489410 | Msa1224810 | 0.806408 | 8.347947e-50 | -8.615850e-47 |
| Msa0489410 | Msa1245930 | 0.816351 | 5.782981e-52 | -8.615850e-47 |
| Msa0489410 | Msa1250790 | 0.801792 | 7.617289e-49 | -8.615850e-47 |
| Msa0489410 | Msa1259060 | 0.819100 | 1.386420e-52 | -8.615850e-47 |
| Msa0489410 | Msa1265630 | 0.810772 | 9.763498e-51 | -8.615850e-47 |
| Msa0489410 | Msa1294070 | 0.809021 | 2.325071e-50 | -8.615850e-47 |
| Msa0489410 | Msa1307180 | 0.805398 | 1.361211e-49 | -8.615850e-47 |
| Msa0489410 | Msa1316360 | 0.831676 | 1.458700e-55 | -8.615850e-47 |
| Msa0489410 | Msa1332590 | 0.803411 | 3.530574e-49 | -8.615850e-47 |
| Msa0489410 | Msa1351540 | 0.808982 | 2.369274e-50 | -8.615850e-47 |
| Msa0489410 | Msa1356440 | 0.826895 | 2.110296e-54 | -8.615850e-47 |
| Msa0489410 | Msa1358250 | 0.825666 | 4.140277e-54 | -8.615850e-47 |
| Msa0489410 | Msa1359630 | 0.803487 | 3.405389e-49 | -8.615850e-47 |
| Msa0489410 | Msa1359970 | 0.843855 | 1.083795e-58 | -8.615850e-47 |
| Msa0489410 | Msa1362090 | 0.839744 | 1.319267e-57 | -8.615850e-47 |
| Msa0489410 | Msa1364210 | 0.821214 | 4.548041e-53 | -8.615850e-47 |
| Msa0489410 | Msa1400220 | 0.843517 | 1.334732e-58 | -8.615850e-47 |
| Msa0489410 | Msa1400580 | 0.810578 | 1.075107e-50 | -8.615850e-47 |
| Msa0489410 | Msa1419870 | 0.858201 | 9.692735e-63 | -8.615850e-47 |
| Msa0489410 | Msa1436520 | 0.856829 | 2.468929e-62 | -8.615850e-47 |
| Msa0489410 | Msa1457920 | 0.852501 | 4.428750e-61 | -8.615850e-47 |
| Msa0489410 | Msa1458210 | 0.804915 | 1.717985e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489410 | MtrunA17_Chr3g0079491 | 96.711 | 152 | 5 | 0 | 1 | 152 | 1 | 152 | 1.02e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489410 | AT2G31725.1 | 62.416 | 149 | 55 | 1 | 1 | 148 | 1 | 149 | 9.15e-71 | 210 |
| Msa0489410 | AT1G05730.1 | 60.403 | 149 | 58 | 1 | 1 | 148 | 1 | 149 | 4.05e-68 | 203 |
| Msa0489410 | AT2G43720.1 | 51.389 | 144 | 69 | 1 | 6 | 148 | 4 | 147 | 2.87e-55 | 171 |
| Msa0489410 | AT1G05730.2 | 59.259 | 108 | 43 | 1 | 42 | 148 | 10 | 117 | 5.07e-45 | 144 |
| Msa0489410 | AT1G05740.1 | 45.652 | 138 | 62 | 2 | 1 | 125 | 1 | 138 | 1.49e-41 | 135 |
| Msa0489410 | AT2G43720.2 | 50.926 | 108 | 52 | 1 | 42 | 148 | 1 | 108 | 2.65e-39 | 129 |
Find 41 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTACGAAAGGGTTTA+AGG | 0.111268 | 3_4:-9751227 | None:intergenic |
| AGACATTATTTAACTATTTC+TGG | 0.116832 | 3_4:+9756863 | Msa0489410:three_prime_UTR |
| AAATGAGATGGCAAAGTTTC+AGG | 0.195239 | 3_4:+9753597 | Msa0489410:CDS |
| TGAGAAAATAAAATCTTTCT+AGG | 0.212124 | 3_4:-9756805 | None:intergenic |
| CTTCAGTTGCAAAAGAAAAT+TGG | 0.224745 | 3_4:+9756836 | Msa0489410:three_prime_UTR |
| CTCATATGCACATTTAAAAT+AGG | 0.309655 | 3_4:-9753485 | None:intergenic |
| TTCTCTACGAAAGGGTTTAA+GGG | 0.340029 | 3_4:-9751226 | None:intergenic |
| GGAAGGAAACAAACTGGGTT+TGG | 0.342720 | 3_4:-9751311 | None:intergenic |
| AATTAGGTCAACAGAGAATT+AGG | 0.348786 | 3_4:+9752908 | Msa0489410:CDS |
| CCTTCCAATCACACATTCTC+AGG | 0.372472 | 3_4:+9751328 | Msa0489410:five_prime_UTR |
| TGCATCGGCATTCAAATTAC+AGG | 0.384744 | 3_4:-9756911 | None:intergenic |
| GCAGCAGCTGAAGCGCAATT+AGG | 0.389975 | 3_4:+9752892 | Msa0489410:CDS |
| TAATTGACATGGTCTTGAAC+AGG | 0.399803 | 3_4:-9752976 | None:intergenic |
| CTAACCTGAGAATGTGTGAT+TGG | 0.446872 | 3_4:-9751332 | None:intergenic |
| TTCTAGGAAGAACTGTTGTC+TGG | 0.450400 | 3_4:-9756789 | None:intergenic |
| TCATAGCTCCAGGTTTCTGT+TGG | 0.458233 | 3_4:-9756674 | None:intergenic |
| AACAAGTTGAAAGCTTCCTT+TGG | 0.460762 | 3_4:+9756762 | Msa0489410:CDS |
| GAAGTTGAATAGATCTATGA+TGG | 0.466964 | 3_4:+9756620 | Msa0489410:CDS |
| ATCATATCATTCATAGCTCC+AGG | 0.479620 | 3_4:-9756684 | None:intergenic |
| GTGATTGGAAGGAAACAAAC+TGG | 0.491174 | 3_4:-9751317 | None:intergenic |
| TCAAAGCTCCAACAGAAACC+TGG | 0.503368 | 3_4:+9756666 | Msa0489410:CDS |
| GGTTTGTCAAGACAAGTATG+AGG | 0.511683 | 3_4:+9756641 | Msa0489410:CDS |
| GACTGTTGCACATTAGAAAG+AGG | 0.512334 | 3_4:-9753568 | None:intergenic |
| CCATGTCAATTATACTCTCC+AGG | 0.522500 | 3_4:+9752987 | Msa0489410:CDS |
| TTGAATCGCTTCGTCAGCAC+AGG | 0.525639 | 3_4:-9756709 | None:intergenic |
| CTTTGATAGAAGCAGAAAGC+AGG | 0.531953 | 3_4:+9753510 | Msa0489410:CDS |
| CTTTCGTAGAGAAGAGGAAA+AGG | 0.537549 | 3_4:+9751236 | Msa0489410:five_prime_UTR |
| TAAACCCTTTCGTAGAGAAG+AGG | 0.539246 | 3_4:+9751230 | Msa0489410:five_prime_UTR |
| TTCAACTTGTTCGTAAGAAG+CGG | 0.544894 | 3_4:-9756750 | None:intergenic |
| CCTGAGAATGTGTGATTGGA+AGG | 0.545691 | 3_4:-9751328 | None:intergenic |
| ATCGATGAATCAAGATGCAT+CGG | 0.563189 | 3_4:-9756926 | None:intergenic |
| GAGAATTAGGCAGAAACTTG+AGG | 0.580267 | 3_4:+9752921 | Msa0489410:CDS |
| TTTACAGTGAGTATATCAGA+TGG | 0.582686 | 3_4:+9752861 | Msa0489410:intron |
| AATTGACATGGTCTTGAACA+GGG | 0.588865 | 3_4:-9752975 | None:intergenic |
| TGTTGTTGAAAATTCTTATG+CGG | 0.592133 | 3_4:-9751259 | None:intergenic |
| ACAGTCATTTGAAAATGAGA+TGG | 0.593900 | 3_4:+9753585 | Msa0489410:CDS |
| CCTGGAGAGTATAATTGACA+TGG | 0.606570 | 3_4:-9752987 | None:intergenic |
| ATTGACATGGTCTTGAACAG+GGG | 0.619900 | 3_4:-9752974 | None:intergenic |
| ACTGTTGTCTGGAATGCCAA+AGG | 0.633485 | 3_4:-9756778 | None:intergenic |
| GTTTGTCAAGACAAGTATGA+GGG | 0.640452 | 3_4:+9756642 | Msa0489410:CDS |
| TGATTGGAAGGAAACAAACT+GGG | 0.705523 | 3_4:-9751316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAAGTTTGATTTTTTAT+CGG | + | chr3_4:9752633-9752652 | Msa0489410:intron | 10.0% |
| !! | AATTTGAATCAAAATAAAAA+AGG | - | chr3_4:9753208-9753227 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTTAATATAGAT+AGG | + | chr3_4:9753361-9753380 | Msa0489410:intron | 10.0% |
| !!! | TTTGAATTGCTTTTAAAAAA+AGG | - | chr3_4:9752368-9752387 | None:intergenic | 15.0% |
| !! | AAAAATCAAACTTATAAGTA+TGG | - | chr3_4:9752630-9752649 | None:intergenic | 15.0% |
| !!! | TTTATAATTCTTGGTTTTAA+AGG | + | chr3_4:9753299-9753318 | Msa0489410:intron | 15.0% |
| !!! | TATTAAAATTTCAAAGCATT+TGG | - | chr3_4:9753356-9753375 | None:intergenic | 15.0% |
| !! | AATTCTATTTATCAGTAAAA+GGG | - | chr3_4:9753422-9753441 | None:intergenic | 15.0% |
| !! | AAATTCTATTTATCAGTAAA+AGG | - | chr3_4:9753423-9753442 | None:intergenic | 15.0% |
| !!! | AAATTAATTTTCTATGATGT+GGG | + | chr3_4:9755720-9755739 | Msa0489410:intron | 15.0% |
| !! | CAAGGTATAAATAAATAATT+TGG | - | chr3_4:9756489-9756508 | None:intergenic | 15.0% |
| !! | TCAAAAGTTAAATTAATACA+AGG | - | chr3_4:9756507-9756526 | None:intergenic | 15.0% |
| !! | AAAGCAAAAAAATTGAAGAA+TGG | - | chr3_4:9751375-9751394 | None:intergenic | 20.0% |
| !! | TGTCTTTAATATCTGATTTA+AGG | + | chr3_4:9751573-9751592 | Msa0489410:intron | 20.0% |
| !!! | ATTTAAGACCTTATAGTATA+TGG | + | chr3_4:9751629-9751648 | Msa0489410:intron | 20.0% |
| !!! | TTTTTCAAACAAGAAAGTTT+AGG | - | chr3_4:9752164-9752183 | None:intergenic | 20.0% |
| !! | TCTTTCATTGTAATATTGAA+TGG | + | chr3_4:9753088-9753107 | Msa0489410:intron | 20.0% |
| !!! | GTAATATTGAATGGTTTTAT+TGG | + | chr3_4:9753097-9753116 | Msa0489410:intron | 20.0% |
| !! | TGAATCAAAATAAAAAAGGA+AGG | - | chr3_4:9753204-9753223 | None:intergenic | 20.0% |
| !! | TTGCATATAATGGTAATATT+CGG | + | chr3_4:9753392-9753411 | Msa0489410:intron | 20.0% |
| !! | TAGAATCAAATTAAAAGAAG+TGG | - | chr3_4:9753694-9753713 | None:intergenic | 20.0% |
| !!! | TGCTTTCAATTTTATAGAAT+AGG | + | chr3_4:9753901-9753920 | Msa0489410:intron | 20.0% |
| !!! | GCTTTCAATTTTATAGAATA+GGG | + | chr3_4:9753902-9753921 | Msa0489410:intron | 20.0% |
| !!! | ATAAACTCATGTCATTTATT+TGG | + | chr3_4:9754119-9754138 | Msa0489410:intron | 20.0% |
| !! | AAACCATTTAGAAAGATTAA+GGG | - | chr3_4:9754344-9754363 | None:intergenic | 20.0% |
| !! | TAAACCATTTAGAAAGATTA+AGG | - | chr3_4:9754345-9754364 | None:intergenic | 20.0% |
| !! | AAAAAATTCTTAAGTTTGAG+TGG | + | chr3_4:9754664-9754683 | Msa0489410:intron | 20.0% |
| !! | AATTAAAAGTAGGATGAAAA+TGG | - | chr3_4:9754718-9754737 | None:intergenic | 20.0% |
| !! | GAAATGATTAAGATAGAAAA+AGG | + | chr3_4:9755628-9755647 | Msa0489410:intron | 20.0% |
| !!! | TGTTTTTTATAATGTGGAAA+AGG | - | chr3_4:9755668-9755687 | None:intergenic | 20.0% |
| !!! | ACACATTGTTTTTTATAATG+TGG | - | chr3_4:9755674-9755693 | None:intergenic | 20.0% |
| !!! | TAGATCTTTTTACATGTTTT+TGG | + | chr3_4:9755693-9755712 | Msa0489410:intron | 20.0% |
| !!! | AGATCTTTTTACATGTTTTT+GGG | + | chr3_4:9755694-9755713 | Msa0489410:intron | 20.0% |
| !! | CACATCATAGAAAATTAATT+TGG | - | chr3_4:9755721-9755740 | None:intergenic | 20.0% |
| !!! | CAAATTAATTTTCTATGATG+TGG | + | chr3_4:9755719-9755738 | Msa0489410:intron | 20.0% |
| !!! | AAATTAAGTGTTGTAGAAAA+CGG | - | chr3_4:9755876-9755895 | None:intergenic | 20.0% |
| !!! | TTCATAAATTTTTCAGTAGT+TGG | + | chr3_4:9755904-9755923 | Msa0489410:intron | 20.0% |
| !! | GAATAAGCGTAATAAATTAT+AGG | - | chr3_4:9756405-9756424 | None:intergenic | 20.0% |
| !! | TGAGAAAATAAAATCTTTCT+AGG | - | chr3_4:9756808-9756827 | None:intergenic | 20.0% |
| !! | AGACATTATTTAACTATTTC+TGG | + | chr3_4:9756863-9756882 | Msa0489410:three_prime_UTR | 20.0% |
| ! | TGTTGTTGAAAATTCTTATG+CGG | - | chr3_4:9751262-9751281 | None:intergenic | 25.0% |
| ! | TTAGGGAAAAACAAATCAAA+GGG | - | chr3_4:9751484-9751503 | None:intergenic | 25.0% |
| ! | ATTAGGGAAAAACAAATCAA+AGG | - | chr3_4:9751485-9751504 | None:intergenic | 25.0% |
| ! | CGAAGAGAAAATCAAAATTA+GGG | - | chr3_4:9751501-9751520 | None:intergenic | 25.0% |
| ! | ACGAAGAGAAAATCAAAATT+AGG | - | chr3_4:9751502-9751521 | None:intergenic | 25.0% |
| !!! | TAATTTTGATTTTCTCTTCG+TGG | + | chr3_4:9751501-9751520 | Msa0489410:intron | 25.0% |
| !!! | AATTTTGATTTTCTCTTCGT+GGG | + | chr3_4:9751502-9751521 | Msa0489410:intron | 25.0% |
| !! | GTCTCAAAAATTGTTTCTTT+GGG | + | chr3_4:9751524-9751543 | Msa0489410:intron | 25.0% |
| ! | TAAACATGTGTTTATAAGTG+GGG | - | chr3_4:9751795-9751814 | None:intergenic | 25.0% |
| ! | GTAAACATGTGTTTATAAGT+GGG | - | chr3_4:9751796-9751815 | None:intergenic | 25.0% |
| ! | TTTATAAAAGACGTCTCATT+GGG | - | chr3_4:9752261-9752280 | None:intergenic | 25.0% |
| !! | CTAAAGTACTAACTTTAAAG+AGG | + | chr3_4:9752806-9752825 | Msa0489410:intron | 25.0% |
| ! | TGATATACTCACTGTAAAAT+GGG | - | chr3_4:9752859-9752878 | None:intergenic | 25.0% |
| ! | TAATGTCATAAGTACTTCAA+TGG | + | chr3_4:9753025-9753044 | Msa0489410:intron | 25.0% |
| ! | GTAGTTCATATTTAGGAATT+AGG | - | chr3_4:9753265-9753284 | None:intergenic | 25.0% |
| ! | TCATGTAGTAGTTCATATTT+AGG | - | chr3_4:9753272-9753291 | None:intergenic | 25.0% |
| !! | GACATGTCTTTTATAATTCT+TGG | + | chr3_4:9753290-9753309 | Msa0489410:intron | 25.0% |
| ! | CAATCAAACAATCAACAATA+CGG | - | chr3_4:9753451-9753470 | None:intergenic | 25.0% |
| !! | CTCATATGCACATTTAAAAT+AGG | - | chr3_4:9753488-9753507 | None:intergenic | 25.0% |
| !! | TCTAACTTTTAAATGATGAC+TGG | + | chr3_4:9753710-9753729 | Msa0489410:intron | 25.0% |
| ! | TTTCATCAGATAGAGAAAAT+AGG | - | chr3_4:9753831-9753850 | None:intergenic | 25.0% |
| !!! | ATTTTAACATGCTATCAAAG+CGG | + | chr3_4:9753850-9753869 | Msa0489410:intron | 25.0% |
| !!! | ATGTTTAGTTCTAATCAAAG+TGG | - | chr3_4:9753882-9753901 | None:intergenic | 25.0% |
| !!! | ATTTTGGTAACAAATCTATG+TGG | - | chr3_4:9753951-9753970 | None:intergenic | 25.0% |
| ! | AGAAACATGGTGTATATAAT+AGG | + | chr3_4:9754222-9754241 | Msa0489410:intron | 25.0% |
| ! | TTTAGAAAGATTAAGGGAAA+TGG | - | chr3_4:9754338-9754357 | None:intergenic | 25.0% |
| ! | TTTCCCTTAATCTTTCTAAA+TGG | + | chr3_4:9754338-9754357 | Msa0489410:intron | 25.0% |
| ! | ATTCATAGTACTTAACATTG+TGG | + | chr3_4:9754558-9754577 | Msa0489410:intron | 25.0% |
| ! | GCTTATTATTGTCCAATATT+TGG | + | chr3_4:9754604-9754623 | Msa0489410:intron | 25.0% |
| !!! | TCATCCTACTTTTAATTCTA+TGG | + | chr3_4:9754721-9754740 | Msa0489410:intron | 25.0% |
| ! | TCAACCATAGAATTAAAAGT+AGG | - | chr3_4:9754728-9754747 | None:intergenic | 25.0% |
| ! | GTTACAAGAAAACCAAAAAA+GGG | - | chr3_4:9755175-9755194 | None:intergenic | 25.0% |
| ! | AGTTACAAGAAAACCAAAAA+AGG | - | chr3_4:9755176-9755195 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTTTTCTTGTAAC+TGG | + | chr3_4:9755175-9755194 | Msa0489410:intron | 25.0% |
| !!! | TTTTTGGTTTTCTTGTAACT+GGG | + | chr3_4:9755176-9755195 | Msa0489410:intron | 25.0% |
| ! | AGGAACATATAATACATTCA+TGG | - | chr3_4:9755381-9755400 | None:intergenic | 25.0% |
| ! | CACAAATCAAAATTTAGAGA+TGG | - | chr3_4:9755411-9755430 | None:intergenic | 25.0% |
| !! | GTAAAAGAAAGTATATCGAA+TGG | - | chr3_4:9755449-9755468 | None:intergenic | 25.0% |
| ! | TATTGAGGTAAGCAAAAATT+AGG | - | chr3_4:9755819-9755838 | None:intergenic | 25.0% |
| ! | ATCAGAGAATATATCTATTG+AGG | - | chr3_4:9755834-9755853 | None:intergenic | 25.0% |
| ! | ATTACAGTCTCAATTGTATT+CGG | + | chr3_4:9755989-9756008 | Msa0489410:intron | 25.0% |
| ! | ATATATGCATAAAAAAGCCA+TGG | - | chr3_4:9756089-9756108 | None:intergenic | 25.0% |
| !! | AAGATTTCAATCTGAAATGT+CGG | - | chr3_4:9756268-9756287 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr3_4:9756341-9756360 | Msa0489410:intron | 25.0% |
| !! | ATCTAATAGTGTTTTCAACA+TGG | + | chr3_4:9756590-9756609 | Msa0489410:intron | 25.0% |
| ! | GGTCTCAAAAATTGTTTCTT+TGG | + | chr3_4:9751523-9751542 | Msa0489410:intron | 30.0% |
| TCTAAGAGTAACTTCTACAA+AGG | - | chr3_4:9751713-9751732 | None:intergenic | 30.0% | |
| AAACATGTGTTTATAAGTGG+GGG | - | chr3_4:9751794-9751813 | None:intergenic | 30.0% | |
| CGTAAACATGTGTTTATAAG+TGG | - | chr3_4:9751797-9751816 | None:intergenic | 30.0% | |
| TTATAGATCATCCATCAAAG+AGG | - | chr3_4:9752064-9752083 | None:intergenic | 30.0% | |
| ! | TGTTGTTTATAAACTACCCT+TGG | - | chr3_4:9752224-9752243 | None:intergenic | 30.0% |
| CTTTATAAAAGACGTCTCAT+TGG | - | chr3_4:9752262-9752281 | None:intergenic | 30.0% | |
| ! | CAATGAGACGTCTTTTATAA+AGG | + | chr3_4:9752260-9752279 | Msa0489410:intron | 30.0% |
| TATAAAGGATAAAGCCATGA+AGG | + | chr3_4:9752275-9752294 | Msa0489410:intron | 30.0% | |
| ACATACACAACATTGATACA+CGG | - | chr3_4:9752490-9752509 | None:intergenic | 30.0% | |
| TATAGGCACGTACAAATTAT+AGG | + | chr3_4:9752753-9752772 | Msa0489410:intron | 30.0% | |
| CTGATATACTCACTGTAAAA+TGG | - | chr3_4:9752860-9752879 | None:intergenic | 30.0% | |
| TTTACAGTGAGTATATCAGA+TGG | + | chr3_4:9752861-9752880 | Msa0489410:intron | 30.0% | |
| AATTAGGTCAACAGAGAATT+AGG | + | chr3_4:9752908-9752927 | Msa0489410:CDS | 30.0% | |
| AAAAAAGGAAGGAAAAATGC+AGG | - | chr3_4:9753193-9753212 | None:intergenic | 30.0% | |
| ! | GGTAATGCTTTTGCATATAA+TGG | + | chr3_4:9753382-9753401 | Msa0489410:intron | 30.0% |
| ACAGTCATTTGAAAATGAGA+TGG | + | chr3_4:9753585-9753604 | Msa0489410:CDS | 30.0% | |
| TGAAATAGAGACAAGAGAAA+AGG | - | chr3_4:9753777-9753796 | None:intergenic | 30.0% | |
| CAGATAGAGAAAATAGGAAA+GGG | - | chr3_4:9753825-9753844 | None:intergenic | 30.0% | |
| TCAGATAGAGAAAATAGGAA+AGG | - | chr3_4:9753826-9753845 | None:intergenic | 30.0% | |
| !! | TTAGTTCTAATCAAAGTGGA+TGG | - | chr3_4:9753878-9753897 | None:intergenic | 30.0% |
| !! | TTTTTCCCACTAGTTGATAT+TGG | + | chr3_4:9754074-9754093 | Msa0489410:intron | 30.0% |
| TTGTTGTCAAATTTCTGCTA+TGG | - | chr3_4:9754304-9754323 | None:intergenic | 30.0% | |
| TAGCAGAAATTTGACAACAA+TGG | + | chr3_4:9754304-9754323 | Msa0489410:intron | 30.0% | |
| ! | GTTTAAGCTATAGTTTTCCT+TGG | + | chr3_4:9754360-9754379 | Msa0489410:intron | 30.0% |
| CACATAAAGCAAGATAAGAT+TGG | - | chr3_4:9754535-9754554 | None:intergenic | 30.0% | |
| CAATAATAAGCAAGCAAACT+TGG | - | chr3_4:9754595-9754614 | None:intergenic | 30.0% | |
| TAAAAGTAGGATGAAAATGG+AGG | - | chr3_4:9754715-9754734 | None:intergenic | 30.0% | |
| GTTCATTATACAAAGTGACA+GGG | - | chr3_4:9754766-9754785 | None:intergenic | 30.0% | |
| CACTTTGTATAATGAACCTA+AGG | + | chr3_4:9754769-9754788 | Msa0489410:intron | 30.0% | |
| TAAATAGTAGGATCGTAACA+CGG | + | chr3_4:9754873-9754892 | Msa0489410:intron | 30.0% | |
| ATCGTTAAATAGTCCTACAT+CGG | + | chr3_4:9754902-9754921 | Msa0489410:intron | 30.0% | |
| CTGAGAATGTGTTTATAAGT+GGG | + | chr3_4:9754937-9754956 | Msa0489410:intron | 30.0% | |
| TGAGAATGTGTTTATAAGTG+GGG | + | chr3_4:9754938-9754957 | Msa0489410:intron | 30.0% | |
| AGATGTATGTAGCAGTTATT+GGG | + | chr3_4:9755037-9755056 | Msa0489410:intron | 30.0% | |
| !! | AATTCATTGGTGTTAATGAC+TGG | - | chr3_4:9755128-9755147 | None:intergenic | 30.0% |
| GTCATTAACACCAATGAATT+TGG | + | chr3_4:9755128-9755147 | Msa0489410:intron | 30.0% | |
| ATTAACACCAATGAATTTGG+TGG | + | chr3_4:9755131-9755150 | Msa0489410:intron | 30.0% | |
| ACATTCATGGTAGTCAAAAT+CGG | - | chr3_4:9755368-9755387 | None:intergenic | 30.0% | |
| CAAAATTTAGAGATGGCAAT+TGG | - | chr3_4:9755404-9755423 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTACCTTTACTC+AGG | + | chr3_4:9755457-9755476 | Msa0489410:intron | 30.0% |
| AGACATATAAAGACAAACCA+CGG | - | chr3_4:9755499-9755518 | None:intergenic | 30.0% | |
| ! | TGATGTGGGTTTCTTAATTT+TGG | + | chr3_4:9755734-9755753 | Msa0489410:intron | 30.0% |
| ! | ACCTAGTCTAGAGTTTAAAT+GGG | - | chr3_4:9756141-9756160 | None:intergenic | 30.0% |
| ATTGAAATCTTCTCCAGTAT+CGG | + | chr3_4:9756277-9756296 | Msa0489410:intron | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr3_4:9756344-9756363 | None:intergenic | 30.0% | |
| TCTTATATGACAATGCTTCA+AGG | - | chr3_4:9756558-9756577 | None:intergenic | 30.0% | |
| CACTATTAGATCAAATACGA+AGG | - | chr3_4:9756581-9756600 | None:intergenic | 30.0% | |
| GAAGTTGAATAGATCTATGA+TGG | + | chr3_4:9756620-9756639 | Msa0489410:CDS | 30.0% | |
| CTTCAGTTGCAAAAGAAAAT+TGG | + | chr3_4:9756836-9756855 | Msa0489410:three_prime_UTR | 30.0% | |
| TTCTCTACGAAAGGGTTTAA+GGG | - | chr3_4:9751229-9751248 | None:intergenic | 35.0% | |
| ! | TTTTCCTCTTCTCTACGAAA+GGG | - | chr3_4:9751237-9751256 | None:intergenic | 35.0% |
| TGATTGGAAGGAAACAAACT+GGG | - | chr3_4:9751319-9751338 | None:intergenic | 35.0% | |
| AGGTCATGCCATATACTATA+AGG | - | chr3_4:9751640-9751659 | None:intergenic | 35.0% | |
| ACTTCTACAAAGGACAAAAC+CGG | - | chr3_4:9751703-9751722 | None:intergenic | 35.0% | |
| GAAGTTACTCTTAGAAATCG+TGG | + | chr3_4:9751718-9751737 | Msa0489410:intron | 35.0% | |
| TTACTCTTAGAAATCGTGGT+TGG | + | chr3_4:9751722-9751741 | Msa0489410:intron | 35.0% | |
| TACTCTTAGAAATCGTGGTT+GGG | + | chr3_4:9751723-9751742 | Msa0489410:intron | 35.0% | |
| AACATGTGTTTATAAGTGGG+GGG | - | chr3_4:9751793-9751812 | None:intergenic | 35.0% | |
| GTCCTACATTGGATAAAACA+TGG | - | chr3_4:9751820-9751839 | None:intergenic | 35.0% | |
| AACATAAGACTCTTTAGGTG+TGG | - | chr3_4:9751960-9751979 | None:intergenic | 35.0% | |
| TTGGCAACATAAGACTCTTT+AGG | - | chr3_4:9751965-9751984 | None:intergenic | 35.0% | |
| ! | TAAAGAGTCTTATGTTGCCA+AGG | + | chr3_4:9751964-9751983 | Msa0489410:intron | 35.0% |
| TTATTACTCGTTGAGCTTTG+AGG | + | chr3_4:9752101-9752120 | Msa0489410:intron | 35.0% | |
| CAAGAAAGTTTAGGTGAGTT+GGG | - | chr3_4:9752155-9752174 | None:intergenic | 35.0% | |
| ACAAGAAAGTTTAGGTGAGT+TGG | - | chr3_4:9752156-9752175 | None:intergenic | 35.0% | |
| AAAATAAGTCCCACATTCCT+TGG | + | chr3_4:9752189-9752208 | Msa0489410:intron | 35.0% | |
| AAATAAGTCCCACATTCCTT+GGG | + | chr3_4:9752190-9752209 | Msa0489410:intron | 35.0% | |
| GCACCTATTATATCTGTCAT+AGG | + | chr3_4:9752596-9752615 | Msa0489410:intron | 35.0% | |
| CAGCCTATGACAGATATAAT+AGG | - | chr3_4:9752602-9752621 | None:intergenic | 35.0% | |
| !! | TGTTATCAATGGCGGATTAT+GGG | - | chr3_4:9752661-9752680 | None:intergenic | 35.0% |
| !! | GTTTGGTGTACTGTTATCAA+TGG | - | chr3_4:9752672-9752691 | None:intergenic | 35.0% |
| !! | CTTTTAATTGAAGGCGTGTT+TGG | - | chr3_4:9752689-9752708 | None:intergenic | 35.0% |
| ! | AATTGACATGGTCTTGAACA+GGG | - | chr3_4:9752978-9752997 | None:intergenic | 35.0% |
| ! | TAATTGACATGGTCTTGAAC+AGG | - | chr3_4:9752979-9752998 | None:intergenic | 35.0% |
| GCAAGAAAGTTAATACCATC+TGG | + | chr3_4:9753151-9753170 | Msa0489410:intron | 35.0% | |
| CAAAAAATTAGCTAGCCAGA+TGG | - | chr3_4:9753169-9753188 | None:intergenic | 35.0% | |
| AAATGAGATGGCAAAGTTTC+AGG | + | chr3_4:9753597-9753616 | Msa0489410:CDS | 35.0% | |
| TGGAACTGGAAATCTAAACA+AGG | - | chr3_4:9753931-9753950 | None:intergenic | 35.0% | |
| GTAACAAATCTATGTGGAAC+TGG | - | chr3_4:9753945-9753964 | None:intergenic | 35.0% | |
| ! | CTGGATGACGATTACAATTT+TGG | - | chr3_4:9753967-9753986 | None:intergenic | 35.0% |
| GAGGAAGACAAGTATAAAAC+TGG | - | chr3_4:9753986-9754005 | None:intergenic | 35.0% | |
| TACTTGTCTTCCTCTTAGTT+TGG | + | chr3_4:9753992-9754011 | Msa0489410:intron | 35.0% | |
| AACATAGACACCAAACTAAG+AGG | - | chr3_4:9754005-9754024 | None:intergenic | 35.0% | |
| TCAACTAGTGGGAAAAAACT+TGG | - | chr3_4:9754071-9754090 | None:intergenic | 35.0% | |
| TGTAGCCAATATCAACTAGT+GGG | - | chr3_4:9754082-9754101 | None:intergenic | 35.0% | |
| ATGTAGCCAATATCAACTAG+TGG | - | chr3_4:9754083-9754102 | None:intergenic | 35.0% | |
| !! | GCGATTGATAACACTGTTTT+GGG | - | chr3_4:9754145-9754164 | None:intergenic | 35.0% |
| CAAAACAGTGTTATCAATCG+CGG | + | chr3_4:9754144-9754163 | Msa0489410:intron | 35.0% | |
| AACAATCCGCCACATAAATA+TGG | + | chr3_4:9754183-9754202 | Msa0489410:intron | 35.0% | |
| ! | TATAATAGGTGTTGCGCTTA+TGG | + | chr3_4:9754236-9754255 | Msa0489410:intron | 35.0% |
| AAGGGTAGTCTAATAGTGAA+AGG | - | chr3_4:9754394-9754413 | None:intergenic | 35.0% | |
| ATAAAGGACATTGACCAGAA+GGG | - | chr3_4:9754412-9754431 | None:intergenic | 35.0% | |
| GAAGACAAAAACACGGATAA+AGG | - | chr3_4:9754428-9754447 | None:intergenic | 35.0% | |
| ! | ACTGTAGAGATTCGTTTTAG+TGG | - | chr3_4:9754467-9754486 | None:intergenic | 35.0% |
| GGTTCATTATACAAAGTGAC+AGG | - | chr3_4:9754767-9754786 | None:intergenic | 35.0% | |
| !! | TCTCATGTTTTAAGCACCTT+AGG | - | chr3_4:9754788-9754807 | None:intergenic | 35.0% |
| GTCACAAGATCGTAAATAGT+AGG | + | chr3_4:9754861-9754880 | Msa0489410:intron | 35.0% | |
| CCACTTATAAACACATTCTC+AGG | - | chr3_4:9754939-9754958 | None:intergenic | 35.0% | |
| CCTGAGAATGTGTTTATAAG+TGG | + | chr3_4:9754936-9754955 | Msa0489410:intron | 35.0% | |
| GAGAATGTGTTTATAAGTGG+GGG | + | chr3_4:9754939-9754958 | Msa0489410:intron | 35.0% | |
| GAGATGTATGTAGCAGTTAT+TGG | + | chr3_4:9755036-9755055 | Msa0489410:intron | 35.0% | |
| TGGGACAATGATCATTGTAT+TGG | + | chr3_4:9755056-9755075 | Msa0489410:intron | 35.0% | |
| GGGACAATGATCATTGTATT+GGG | + | chr3_4:9755057-9755076 | Msa0489410:intron | 35.0% | |
| !! | AATTTTTAGGCTTTCCAGGT+CGG | - | chr3_4:9755231-9755250 | None:intergenic | 35.0% |
| ! | CTACGCATTCTGCAATTTTT+AGG | - | chr3_4:9755244-9755263 | None:intergenic | 35.0% |
| AATTTAGAGATGGCAATTGG+AGG | - | chr3_4:9755401-9755420 | None:intergenic | 35.0% | |
| ! | TTCTTTTACCTTTACTCAGG+TGG | + | chr3_4:9755460-9755479 | Msa0489410:intron | 35.0% |
| AGATGATCAATGAGATTGTG+AGG | - | chr3_4:9755772-9755791 | None:intergenic | 35.0% | |
| GTAGAAAACGGCTAATAGTA+AGG | - | chr3_4:9755864-9755883 | None:intergenic | 35.0% | |
| ATACCATGGCTTCATTTGTA+TGG | - | chr3_4:9756019-9756038 | None:intergenic | 35.0% | |
| TACAAATGAAGCCATGGTAT+AGG | + | chr3_4:9756019-9756038 | Msa0489410:intron | 35.0% | |
| ! | GTCTTGATTTTCCTATACCA+TGG | - | chr3_4:9756033-9756052 | None:intergenic | 35.0% |
| ! | ATAGTGAAGCGTTAACAACT+CGG | - | chr3_4:9756055-9756074 | None:intergenic | 35.0% |
| ! | CCTAGTCTAGAGTTTAAATG+GGG | - | chr3_4:9756140-9756159 | None:intergenic | 35.0% |
| ! | GACCTAGTCTAGAGTTTAAA+TGG | - | chr3_4:9756142-9756161 | None:intergenic | 35.0% |
| TGAAAGCTGCTAGAAAATCA+AGG | + | chr3_4:9756166-9756185 | Msa0489410:intron | 35.0% | |
| ! | TAGTGTTTTCAACATGGTAC+AGG | + | chr3_4:9756596-9756615 | Msa0489410:intron | 35.0% |
| GTTTGTCAAGACAAGTATGA+GGG | + | chr3_4:9756642-9756661 | Msa0489410:CDS | 35.0% | |
| ATCATATCATTCATAGCTCC+AGG | - | chr3_4:9756687-9756706 | None:intergenic | 35.0% | |
| ! | TTCAACTTGTTCGTAAGAAG+CGG | - | chr3_4:9756753-9756772 | None:intergenic | 35.0% |
| ! | AACAAGTTGAAAGCTTCCTT+TGG | + | chr3_4:9756762-9756781 | Msa0489410:CDS | 35.0% |
| ATCGATGAATCAAGATGCAT+CGG | - | chr3_4:9756929-9756948 | None:intergenic | 35.0% | |
| CTTCTCTACGAAAGGGTTTA+AGG | - | chr3_4:9751230-9751249 | None:intergenic | 40.0% | |
| TAAACCCTTTCGTAGAGAAG+AGG | + | chr3_4:9751230-9751249 | Msa0489410:five_prime_UTR | 40.0% | |
| ! | CTTTTCCTCTTCTCTACGAA+AGG | - | chr3_4:9751238-9751257 | None:intergenic | 40.0% |
| CTTTCGTAGAGAAGAGGAAA+AGG | + | chr3_4:9751236-9751255 | Msa0489410:five_prime_UTR | 40.0% | |
| GTGATTGGAAGGAAACAAAC+TGG | - | chr3_4:9751320-9751339 | None:intergenic | 40.0% | |
| CTAACCTGAGAATGTGTGAT+TGG | - | chr3_4:9751335-9751354 | None:intergenic | 40.0% | |
| TATATGGCATGACCTCAAGT+TGG | + | chr3_4:9751645-9751664 | Msa0489410:intron | 40.0% | |
| TTCTACAAAGGACAAAACCG+GGG | - | chr3_4:9751701-9751720 | None:intergenic | 40.0% | |
| CTTCTACAAAGGACAAAACC+GGG | - | chr3_4:9751702-9751721 | None:intergenic | 40.0% | |
| !! | TTTCACAAGCCAGTTTTGTG+GGG | - | chr3_4:9751759-9751778 | None:intergenic | 40.0% |
| !! | CTTTCACAAGCCAGTTTTGT+GGG | - | chr3_4:9751760-9751779 | None:intergenic | 40.0% |
| ! | CGCCATGTTTTATCCAATGT+AGG | + | chr3_4:9751815-9751834 | Msa0489410:intron | 40.0% |
| AAAGTAGTGTGTCGGATTTG+TGG | + | chr3_4:9751852-9751871 | Msa0489410:intron | 40.0% | |
| AGTTGAGACGAAGGAGTAAA+GGG | - | chr3_4:9751915-9751934 | None:intergenic | 40.0% | |
| TTCGTCTCAACTCTCAACTA+GGG | + | chr3_4:9751923-9751942 | Msa0489410:intron | 40.0% | |
| ! | AAGGTTGGCTCAATTGGTAA+GGG | + | chr3_4:9751987-9752006 | Msa0489410:intron | 40.0% |
| AATTGAACCCACAACCTTGT+GGG | - | chr3_4:9752022-9752041 | None:intergenic | 40.0% | |
| AGCTCAACGAGTAATAACAG+AGG | - | chr3_4:9752098-9752117 | None:intergenic | 40.0% | |
| !!! | TTCAAGGTATTGTCCGCTTT+TGG | - | chr3_4:9752308-9752327 | None:intergenic | 40.0% |
| AAAGCGGACAATACCTTGAA+AGG | + | chr3_4:9752308-9752327 | Msa0489410:intron | 40.0% | |
| ! | GACAGATATAATAGGTGCTG+TGG | - | chr3_4:9752594-9752613 | None:intergenic | 40.0% |
| !! | TTATCAATGGCGGATTATGG+GGG | - | chr3_4:9752659-9752678 | None:intergenic | 40.0% |
| !! | GTTATCAATGGCGGATTATG+GGG | - | chr3_4:9752660-9752679 | None:intergenic | 40.0% |
| !! | CTGTTATCAATGGCGGATTA+TGG | - | chr3_4:9752662-9752681 | None:intergenic | 40.0% |
| TGGTGTACTGTTATCAATGG+CGG | - | chr3_4:9752669-9752688 | None:intergenic | 40.0% | |
| ! | ACGCCTTCAATTAAAAGCGT+CGG | + | chr3_4:9752692-9752711 | Msa0489410:intron | 40.0% |
| GAGAATTAGGCAGAAACTTG+AGG | + | chr3_4:9752921-9752940 | Msa0489410:CDS | 40.0% | |
| ! | ATTGACATGGTCTTGAACAG+GGG | - | chr3_4:9752977-9752996 | None:intergenic | 40.0% |
| ! | CCTGGAGAGTATAATTGACA+TGG | - | chr3_4:9752990-9753009 | None:intergenic | 40.0% |
| CCATGTCAATTATACTCTCC+AGG | + | chr3_4:9752987-9753006 | Msa0489410:CDS | 40.0% | |
| TATACTCTCCAGGTTCTTTC+TGG | + | chr3_4:9752997-9753016 | Msa0489410:intron | 40.0% | |
| TTAAGAGACCAGAAAGAACC+TGG | - | chr3_4:9753008-9753027 | None:intergenic | 40.0% | |
| CTTTGATAGAAGCAGAAAGC+AGG | + | chr3_4:9753510-9753529 | Msa0489410:CDS | 40.0% | |
| GACTGTTGCACATTAGAAAG+AGG | - | chr3_4:9753571-9753590 | None:intergenic | 40.0% | |
| ATGATGACTGGAGCTGATTA+AGG | + | chr3_4:9753722-9753741 | Msa0489410:intron | 40.0% | |
| TGATGACTGGAGCTGATTAA+GGG | + | chr3_4:9753723-9753742 | Msa0489410:intron | 40.0% | |
| GTGGGAAAAAACTTGGTTGT+CGG | - | chr3_4:9754064-9754083 | None:intergenic | 40.0% | |
| !! | CGCGATTGATAACACTGTTT+TGG | - | chr3_4:9754146-9754165 | None:intergenic | 40.0% |
| ! | GTGTTATCAATCGCGGATTA+CGG | + | chr3_4:9754151-9754170 | Msa0489410:intron | 40.0% |
| TGCAGCATATGTCAGAAACA+TGG | + | chr3_4:9754209-9754228 | Msa0489410:intron | 40.0% | |
| TCACTATTAGACTACCCTTC+TGG | + | chr3_4:9754395-9754414 | Msa0489410:intron | 40.0% | |
| GATAAAGGACATTGACCAGA+AGG | - | chr3_4:9754413-9754432 | None:intergenic | 40.0% | |
| TGTTGTGCAAGGCCAAATAT+TGG | - | chr3_4:9754619-9754638 | None:intergenic | 40.0% | |
| AAGACCTACAATGTTGTGCA+AGG | - | chr3_4:9754630-9754649 | None:intergenic | 40.0% | |
| CACAACATTGTAGGTCTTAG+AGG | + | chr3_4:9754632-9754651 | Msa0489410:intron | 40.0% | |
| AACATTGTAGGTCTTAGAGG+CGG | + | chr3_4:9754635-9754654 | Msa0489410:intron | 40.0% | |
| CATGAGATACGATGTGTTCA+AGG | + | chr3_4:9754801-9754820 | Msa0489410:intron | 40.0% | |
| GTGTTCAAGGTAGTCAGAAT+CGG | + | chr3_4:9754814-9754833 | Msa0489410:intron | 40.0% | |
| TGTTCAAGGTAGTCAGAATC+GGG | + | chr3_4:9754815-9754834 | Msa0489410:intron | 40.0% | |
| ATCGGGATCCTAGATATGAT+CGG | + | chr3_4:9754832-9754851 | Msa0489410:intron | 40.0% | |
| TCATACAGTCACAGCTTGTA+AGG | - | chr3_4:9754974-9754993 | None:intergenic | 40.0% | |
| TTACAAGCTGTGACTGTATG+AGG | + | chr3_4:9754973-9754992 | Msa0489410:intron | 40.0% | |
| TACAAGCTGTGACTGTATGA+GGG | + | chr3_4:9754974-9754993 | Msa0489410:intron | 40.0% | |
| TACAGCAGTTAATCACACTG+TGG | + | chr3_4:9755085-9755104 | Msa0489410:intron | 40.0% | |
| ACAGCAGTTAATCACACTGT+GGG | + | chr3_4:9755086-9755105 | Msa0489410:intron | 40.0% | |
| !! | ATTGGTGTTAATGACTGGAG+CGG | - | chr3_4:9755123-9755142 | None:intergenic | 40.0% |
| !!! | GTGGGTTATGAACCCTTTTT+TGG | + | chr3_4:9755160-9755179 | Msa0489410:intron | 40.0% |
| !! | ATTTTTAGGCTTTCCAGGTC+GGG | - | chr3_4:9755230-9755249 | None:intergenic | 40.0% |
| !! | CTGCAATTTTTAGGCTTTCC+AGG | - | chr3_4:9755235-9755254 | None:intergenic | 40.0% |
| CAGAATGCGTAGAAACGTAA+CGG | + | chr3_4:9755252-9755271 | Msa0489410:intron | 40.0% | |
| ! | TTGATAGCAGACAGTGGAAT+CGG | - | chr3_4:9755283-9755302 | None:intergenic | 40.0% |
| ! | CGTAAATTGATAGCAGACAG+TGG | - | chr3_4:9755289-9755308 | None:intergenic | 40.0% |
| TTATCACAGAACACAGCGAT+AGG | + | chr3_4:9755316-9755335 | Msa0489410:intron | 40.0% | |
| TATCACAGAACACAGCGATA+GGG | + | chr3_4:9755317-9755336 | Msa0489410:intron | 40.0% | |
| TATGCAACAAGTGTACATGC+TGG | + | chr3_4:9755564-9755583 | Msa0489410:intron | 40.0% | |
| ACGGCTAATAGTAAGGTAGT+TGG | - | chr3_4:9755857-9755876 | None:intergenic | 40.0% | |
| AGCTCATAACACTAGAGAGA+AGG | - | chr3_4:9755942-9755961 | None:intergenic | 40.0% | |
| GTTATGAGCTCAAAGAATGC+CGG | + | chr3_4:9755952-9755971 | Msa0489410:intron | 40.0% | |
| CACTATTTGTTCCACTTCCA+TGG | + | chr3_4:9756069-9756088 | Msa0489410:intron | 40.0% | |
| GCATAAAAAAGCCATGGAAG+TGG | - | chr3_4:9756083-9756102 | None:intergenic | 40.0% | |
| ! | TAAATGGGGACAAGAAGTGT+TGG | - | chr3_4:9756126-9756145 | None:intergenic | 40.0% |
| CCCCATTTAAACTCTAGACT+AGG | + | chr3_4:9756137-9756156 | Msa0489410:intron | 40.0% | |
| ATGTCGGTATCTTGTCATGT+TGG | - | chr3_4:9756306-9756325 | None:intergenic | 40.0% | |
| GTAGTCATAACCACAGATGT+CGG | - | chr3_4:9756322-9756341 | None:intergenic | 40.0% | |
| GGTTTGTCAAGACAAGTATG+AGG | + | chr3_4:9756641-9756660 | Msa0489410:CDS | 40.0% | |
| ! | TTCTAGGAAGAACTGTTGTC+TGG | - | chr3_4:9756792-9756811 | None:intergenic | 40.0% |
| ! | TGCATCGGCATTCAAATTAC+AGG | - | chr3_4:9756914-9756933 | None:intergenic | 40.0% |
| GGAAGGAAACAAACTGGGTT+TGG | - | chr3_4:9751314-9751333 | None:intergenic | 45.0% | |
| CCTGAGAATGTGTGATTGGA+AGG | - | chr3_4:9751331-9751350 | None:intergenic | 45.0% | |
| CCTTCCAATCACACATTCTC+AGG | + | chr3_4:9751328-9751347 | Msa0489410:five_prime_UTR | 45.0% | |
| AAGATGGTGTGACCAACTTG+AGG | - | chr3_4:9751660-9751679 | None:intergenic | 45.0% | |
| TTGGTCACACCATCTTAGCT+TGG | + | chr3_4:9751664-9751683 | Msa0489410:intron | 45.0% | |
| TGGTCACACCATCTTAGCTT+GGG | + | chr3_4:9751665-9751684 | Msa0489410:intron | 45.0% | |
| AACATGCACCCAAGCTAAGA+TGG | - | chr3_4:9751676-9751695 | None:intergenic | 45.0% | |
| ATTGCACAACCCCACAAAAC+TGG | + | chr3_4:9751747-9751766 | Msa0489410:intron | 45.0% | |
| ! | CCTTTCACAAGCCAGTTTTG+TGG | - | chr3_4:9751761-9751780 | None:intergenic | 45.0% |
| !! | CCACAAAACTGGCTTGTGAA+AGG | + | chr3_4:9751758-9751777 | Msa0489410:intron | 45.0% |
| AATCCGACACACTACTTTCG+AGG | - | chr3_4:9751850-9751869 | None:intergenic | 45.0% | |
| GTGTCGGATTTGTGGAACAT+TGG | + | chr3_4:9751860-9751879 | Msa0489410:intron | 45.0% | |
| GAGTTGAGACGAAGGAGTAA+AGG | - | chr3_4:9751916-9751935 | None:intergenic | 45.0% | |
| CTAGTTGAGAGTTGAGACGA+AGG | - | chr3_4:9751924-9751943 | None:intergenic | 45.0% | |
| CTTCGTCTCAACTCTCAACT+AGG | + | chr3_4:9751922-9751941 | Msa0489410:intron | 45.0% | |
| ACTCTTTAGGTGTGGCGAAA+CGG | - | chr3_4:9751952-9751971 | None:intergenic | 45.0% | |
| ! | GAGTCTTATGTTGCCAAGGA+AGG | + | chr3_4:9751968-9751987 | Msa0489410:intron | 45.0% |
| CTTATGTTGCCAAGGAAGGT+TGG | + | chr3_4:9751972-9751991 | Msa0489410:intron | 45.0% | |
| ! | GAAGGTTGGCTCAATTGGTA+AGG | + | chr3_4:9751986-9752005 | Msa0489410:intron | 45.0% |
| GAATTGAACCCACAACCTTG+TGG | - | chr3_4:9752023-9752042 | None:intergenic | 45.0% | |
| ATCAAAGAGGTCGTCACACT+GGG | - | chr3_4:9752051-9752070 | None:intergenic | 45.0% | |
| ! | TTTGAGGTCTGACATGACCT+TGG | + | chr3_4:9752117-9752136 | Msa0489410:intron | 45.0% |
| CCTAGATTCCCAAGGAATGT+GGG | - | chr3_4:9752201-9752220 | None:intergenic | 45.0% | |
| !! | TCTCATTGGGTTGAGGAAAG+CGG | - | chr3_4:9752248-9752267 | None:intergenic | 45.0% |
| ! | AAAGACGTCTCATTGGGTTG+AGG | - | chr3_4:9752255-9752274 | None:intergenic | 45.0% |
| !! | CTTTTGGTGCAAGTCCTTCA+TGG | - | chr3_4:9752292-9752311 | None:intergenic | 45.0% |
| TGAAGGACTTGCACCAAAAG+CGG | + | chr3_4:9752292-9752311 | Msa0489410:intron | 45.0% | |
| TACCTTGAAAGGTGGTGTGA+TGG | + | chr3_4:9752319-9752338 | Msa0489410:intron | 45.0% | |
| ACCTTGAAAGGTGGTGTGAT+GGG | + | chr3_4:9752320-9752339 | Msa0489410:intron | 45.0% | |
| CGTGCATGTGAGTACTTCAT+TGG | - | chr3_4:9752392-9752411 | None:intergenic | 45.0% | |
| GTCTTGCGTCTAATATGTGC+TGG | - | chr3_4:9752521-9752540 | None:intergenic | 45.0% | |
| GAATGGCACAGAATCTGTCA+TGG | - | chr3_4:9752563-9752582 | None:intergenic | 45.0% | |
| ! | ATAATAGGTGCTGTGGCCTA+TGG | - | chr3_4:9752587-9752606 | None:intergenic | 45.0% |
| !! | GCACCGACGCTTTTAATTGA+AGG | - | chr3_4:9752698-9752717 | None:intergenic | 45.0% |
| ! | TTATCAATCGCGGATTACGG+TGG | + | chr3_4:9754154-9754173 | Msa0489410:intron | 45.0% |
| !! | TTATGTGGCGGATTGTTAGC+TGG | - | chr3_4:9754180-9754199 | None:intergenic | 45.0% |
| GCAGTGCCATATTTATGTGG+CGG | - | chr3_4:9754192-9754211 | None:intergenic | 45.0% | |
| GCTGCAGTGCCATATTTATG+TGG | - | chr3_4:9754195-9754214 | None:intergenic | 45.0% | |
| TGCATTGTGGCGTTATAGCA+TGG | - | chr3_4:9754280-9754299 | None:intergenic | 45.0% | |
| TTTCTGCTATGGCTGCATTG+TGG | - | chr3_4:9754293-9754312 | None:intergenic | 45.0% | |
| AGTGAAAGGTAGTGAGACCA+AGG | - | chr3_4:9754380-9754399 | None:intergenic | 45.0% | |
| GCGCGTTGAAGACAAAAACA+CGG | - | chr3_4:9754435-9754454 | None:intergenic | 45.0% | |
| !! | TTGGCCTTGCACAACATTGT+AGG | + | chr3_4:9754623-9754642 | Msa0489410:intron | 45.0% |
| GGATGAAAATGGAGGAAGTC+TGG | - | chr3_4:9754707-9754726 | None:intergenic | 45.0% | |
| CAAAGTGACAGGGAGATAGA+AGG | - | chr3_4:9754756-9754775 | None:intergenic | 45.0% | |
| TCGGGATCCTAGATATGATC+GGG | + | chr3_4:9754833-9754852 | Msa0489410:intron | 45.0% | |
| ATCCTAGATATGATCGGGGA+AGG | + | chr3_4:9754838-9754857 | Msa0489410:intron | 45.0% | |
| TCCTAGATATGATCGGGGAA+GGG | + | chr3_4:9754839-9754858 | Msa0489410:intron | 45.0% | |
| GGTCATCTCTTATCCGATGT+AGG | - | chr3_4:9754918-9754937 | None:intergenic | 45.0% | |
| CCACACTCCACCAAATTCAT+TGG | - | chr3_4:9755141-9755160 | None:intergenic | 45.0% | |
| ! | CCAATGAATTTGGTGGAGTG+TGG | + | chr3_4:9755138-9755157 | Msa0489410:intron | 45.0% |
| ! | ATGAATTTGGTGGAGTGTGG+TGG | + | chr3_4:9755141-9755160 | Msa0489410:intron | 45.0% |
| ! | TGAATTTGGTGGAGTGTGGT+GGG | + | chr3_4:9755142-9755161 | Msa0489410:intron | 45.0% |
| !! | GGGTCGTTTTAACAGAAACC+AGG | + | chr3_4:9755196-9755215 | Msa0489410:intron | 45.0% |
| CAAGACTTCCACCTGAGTAA+AGG | - | chr3_4:9755471-9755490 | None:intergenic | 45.0% | |
| GTAATGCGCTTCAGAGTTTC+CGG | - | chr3_4:9755974-9755993 | None:intergenic | 45.0% | |
| CCATGGCTTCATTTGTATGG+TGG | - | chr3_4:9756016-9756035 | None:intergenic | 45.0% | |
| CCACCATACAAATGAAGCCA+TGG | + | chr3_4:9756013-9756032 | Msa0489410:intron | 45.0% | |
| !! | ACAAGAAGTGTTGGCAGTCA+TGG | - | chr3_4:9756117-9756136 | None:intergenic | 45.0% |
| GTCATGTTGGTATCCGATAC+TGG | - | chr3_4:9756293-9756312 | None:intergenic | 45.0% | |
| TGACAAGATACCGACATCTG+TGG | + | chr3_4:9756309-9756328 | Msa0489410:intron | 45.0% | |
| TAAGACACAGACACAGAGAC+CGG | - | chr3_4:9756363-9756382 | None:intergenic | 45.0% | |
| TCAAAGCTCCAACAGAAACC+TGG | + | chr3_4:9756666-9756685 | Msa0489410:CDS | 45.0% | |
| TCATAGCTCCAGGTTTCTGT+TGG | - | chr3_4:9756677-9756696 | None:intergenic | 45.0% | |
| ! | ACTGTTGTCTGGAATGCCAA+AGG | - | chr3_4:9756781-9756800 | None:intergenic | 45.0% |
| !! | ATATACTATATTATATTTAT+AGG | + | chr3_4:9752736-9752755 | Msa0489410:intron | 5.0% |
| ! | GAGGCGTTAGAGTCCTACAT+TGG | - | chr3_4:9751831-9751850 | None:intergenic | 50.0% |
| ACGCCTCGAAAGTAGTGTGT+CGG | + | chr3_4:9751844-9751863 | Msa0489410:intron | 50.0% | |
| GGTCGTCTAAGCCACTATGA+TGG | + | chr3_4:9751881-9751900 | Msa0489410:intron | 50.0% | |
| CCAATTGAGCCAACCTTCCT+TGG | - | chr3_4:9751984-9752003 | None:intergenic | 50.0% | |
| ! | CCAAGGAAGGTTGGCTCAAT+TGG | + | chr3_4:9751981-9752000 | Msa0489410:intron | 50.0% |
| ! | AAGGGATTGACTCACCCACA+AGG | + | chr3_4:9752005-9752024 | Msa0489410:intron | 50.0% |
| TTGACTCACCCACAAGGTTG+TGG | + | chr3_4:9752011-9752030 | Msa0489410:intron | 50.0% | |
| TGACTCACCCACAAGGTTGT+GGG | + | chr3_4:9752012-9752031 | Msa0489410:intron | 50.0% | |
| TCAAAGAGGTCGTCACACTG+GGG | - | chr3_4:9752050-9752069 | None:intergenic | 50.0% | |
| CATCAAAGAGGTCGTCACAC+TGG | - | chr3_4:9752052-9752071 | None:intergenic | 50.0% | |
| CAGTGTGACGACCTCTTTGA+TGG | + | chr3_4:9752050-9752069 | Msa0489410:intron | 50.0% | |
| ! | TTTAGGTGAGTTGGGCTCCA+AGG | - | chr3_4:9752147-9752166 | None:intergenic | 50.0% |
| CCCACATTCCTTGGGAATCT+AGG | + | chr3_4:9752198-9752217 | Msa0489410:intron | 50.0% | |
| GCCTAGATTCCCAAGGAATG+TGG | - | chr3_4:9752202-9752221 | None:intergenic | 50.0% | |
| TTCCTTGGGAATCTAGGCCA+AGG | + | chr3_4:9752204-9752223 | Msa0489410:intron | 50.0% | |
| TCCTTGGGAATCTAGGCCAA+GGG | + | chr3_4:9752205-9752224 | Msa0489410:intron | 50.0% | |
| GCGGACAATACCTTGAAAGG+TGG | + | chr3_4:9752311-9752330 | Msa0489410:intron | 50.0% | |
| TGGCACAGAATCTGTCATGG+CGG | - | chr3_4:9752560-9752579 | None:intergenic | 50.0% | |
| ! | GATTCTGTGCCATTCGCCAT+AGG | + | chr3_4:9752568-9752587 | Msa0489410:intron | 50.0% |
| CGGGATCCTAGATATGATCG+GGG | + | chr3_4:9754834-9754853 | Msa0489410:intron | 50.0% | |
| ACCCTTCCCCGATCATATCT+AGG | - | chr3_4:9754843-9754862 | None:intergenic | 50.0% | |
| AGCTGTGACTGTATGAGGGA+AGG | + | chr3_4:9754978-9754997 | Msa0489410:intron | 50.0% | |
| ! | GTGGAAGTCTTGTGTTTCCG+TGG | + | chr3_4:9755479-9755498 | Msa0489410:intron | 50.0% |
| TACATGCTGGCGTCATCTCT+TGG | + | chr3_4:9755577-9755596 | Msa0489410:intron | 50.0% | |
| TTGAATCGCTTCGTCAGCAC+AGG | - | chr3_4:9756712-9756731 | None:intergenic | 50.0% | |
| GGGTCTGTCAGCCATCATAG+TGG | - | chr3_4:9751895-9751914 | None:intergenic | 55.0% | |
| CAAAGAGGTCGTCACACTGG+GGG | - | chr3_4:9752049-9752068 | None:intergenic | 55.0% | |
| GACATGACCTTGGTGAGCCT+TGG | + | chr3_4:9752127-9752146 | Msa0489410:intron | 55.0% | |
| ACCCTTGGCCTAGATTCCCA+AGG | - | chr3_4:9752209-9752228 | None:intergenic | 55.0% | |
| GCCCATCACACCACCTTTCA+AGG | - | chr3_4:9752324-9752343 | None:intergenic | 55.0% | |
| !! | AAGGTGGTGTGATGGGCTTG+AGG | + | chr3_4:9752327-9752346 | Msa0489410:intron | 55.0% |
| !! | TGGTGTGATGGGCTTGAGGT+CGG | + | chr3_4:9752331-9752350 | Msa0489410:intron | 55.0% |
| GCAGCAGCTGAAGCGCAATT+AGG | + | chr3_4:9752892-9752911 | Msa0489410:CDS | 55.0% | |
| GCTTGGGTGCATGTTCTCCC+CGG | + | chr3_4:9751681-9751700 | Msa0489410:intron | 60.0% | |
| TTGGGCTCCAAGGCTCACCA+AGG | - | chr3_4:9752137-9752156 | None:intergenic | 60.0% | |
| GTGCTGTGGCCTATGGCGAA+TGG | - | chr3_4:9752580-9752599 | None:intergenic | 60.0% | |
| GAGGTCGTCACACTGGGGGA+GGG | - | chr3_4:9752045-9752064 | None:intergenic | 65.0% | |
| AGAGGTCGTCACACTGGGGG+AGG | - | chr3_4:9752046-9752065 | None:intergenic | 65.0% | |
| CCAGGTCGGGTTACACGTCC+TGG | - | chr3_4:9755217-9755236 | None:intergenic | 65.0% | |
| CCAGGACGTGTAACCCGACC+TGG | + | chr3_4:9755214-9755233 | Msa0489410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 9751207 | 9757011 | 9751207 | ID=Msa0489410;Name=Msa0489410 |
| chr3_4 | mRNA | 9751207 | 9757011 | 9751207 | ID=Msa0489410-mRNA-1;Parent=Msa0489410;Name=Msa0489410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=155|1|1|1|0.66|0.5|4|202|152 |
| chr3_4 | exon | 9751207 | 9751349 | 9751207 | ID=Msa0489410-mRNA-1:exon:3143;Parent=Msa0489410-mRNA-1 |
| chr3_4 | exon | 9752868 | 9753008 | 9752868 | ID=Msa0489410-mRNA-1:exon:3144;Parent=Msa0489410-mRNA-1 |
| chr3_4 | exon | 9753481 | 9753618 | 9753481 | ID=Msa0489410-mRNA-1:exon:3145;Parent=Msa0489410-mRNA-1 |
| chr3_4 | exon | 9756618 | 9757011 | 9756618 | ID=Msa0489410-mRNA-1:exon:3146;Parent=Msa0489410-mRNA-1 |
| chr3_4 | five_prime_UTR | 9751207 | 9751349 | 9751207 | ID=Msa0489410-mRNA-1:five_prime_utr;Parent=Msa0489410-mRNA-1 |
| chr3_4 | five_prime_UTR | 9752868 | 9752879 | 9752868 | ID=Msa0489410-mRNA-1:five_prime_utr;Parent=Msa0489410-mRNA-1 |
| chr3_4 | CDS | 9752880 | 9753008 | 9752880 | ID=Msa0489410-mRNA-1:cds;Parent=Msa0489410-mRNA-1 |
| chr3_4 | CDS | 9753481 | 9753618 | 9753481 | ID=Msa0489410-mRNA-1:cds;Parent=Msa0489410-mRNA-1 |
| chr3_4 | CDS | 9756618 | 9756809 | 9756618 | ID=Msa0489410-mRNA-1:cds;Parent=Msa0489410-mRNA-1 |
| chr3_4 | three_prime_UTR | 9756810 | 9757011 | 9756810 | ID=Msa0489410-mRNA-1:three_prime_utr;Parent=Msa0489410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
