Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012890 | sp|Q67ZF6|ACFR3_ARATH | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.38e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012890 | Msa0061850 | 0.865721 | 4.808041e-65 | -8.615850e-47 |
| Msa0012890 | Msa0152820 | 0.860091 | 2.629764e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012890 | MtrunA17_Chr1g0161941 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 3.33e-136 | 380 |
| Msa0012890 | MtrunA17_Chr8g0375991 | 60.476 | 210 | 81 | 2 | 1 | 210 | 1 | 208 | 8.14e-89 | 260 |
| Msa0012890 | MtrunA17_Chr1g0161921 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 4.82e-56 | 177 |
| Msa0012890 | MtrunA17_Chr1g0203371 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 4.08e-55 | 175 |
| Msa0012890 | MtrunA17_Chr6g0456901 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 4.98e-42 | 142 |
| Msa0012890 | MtrunA17_Chr5g0422371 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 1.01e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012890 | AT1G14730.1 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.44e-73 | 221 |
| Msa0012890 | AT4G25570.1 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.44e-53 | 171 |
| Msa0012890 | AT4G25570.2 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.65e-52 | 169 |
| Msa0012890 | AT5G38630.1 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 5.88e-45 | 149 |
| Msa0012890 | AT1G26100.1 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 1.22e-24 | 97.4 |
Find 57 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.165329 | 1_1:-19864978 | Msa0012890:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 1_1:-19865170 | Msa0012890:intron |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 1_1:-19865019 | Msa0012890:CDS |
| TTGGTTACATTCTTGGTTCC+TGG | 0.284163 | 1_1:-19863749 | Msa0012890:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 1_1:-19863563 | Msa0012890:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 1_1:+19866240 | None:intergenic |
| CCTTCATACTCATACTTGTT+TGG | 0.309677 | 1_1:-19866453 | Msa0012890:CDS |
| AGGCTTAGGAACATCATTAA+AGG | 0.317240 | 1_1:+19866260 | None:intergenic |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 1_1:-19864986 | Msa0012890:CDS |
| TCAGGTTTGGCTCATTTGTT+TGG | 0.341278 | 1_1:-19866484 | Msa0012890:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.343303 | 1_1:-19863656 | Msa0012890:CDS |
| GAGGATGGTGATGAAAATAA+AGG | 0.360242 | 1_1:+19866559 | None:intergenic |
| GTAAACAAATCAATTGTATA+AGG | 0.363639 | 1_1:+19863480 | None:intergenic |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 1_1:+19865143 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 1_1:-19863597 | Msa0012890:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 1_1:-19863584 | Msa0012890:CDS |
| CTTGTTGCATCTTGTGCTCC+AGG | 0.406946 | 1_1:+19863731 | None:intergenic |
| AGGATGGTGATGAAAATAAA+GGG | 0.411631 | 1_1:+19866560 | None:intergenic |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 1_1:-19865119 | Msa0012890:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 1_1:-19865010 | Msa0012890:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 1_1:-19866497 | Msa0012890:CDS |
| TGCTGCATTAACAGGATTGA+TGG | 0.440745 | 1_1:-19863648 | Msa0012890:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 1_1:-19865135 | Msa0012890:CDS |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 1_1:-19866409 | Msa0012890:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 1_1:+19865038 | None:intergenic |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 1_1:-19866502 | Msa0012890:CDS |
| GGCTTAGGAACATCATTAAA+GGG | 0.482631 | 1_1:+19866261 | None:intergenic |
| CGAGCTTCGAGGACTCTAAA+GGG | 0.489347 | 1_1:-19863400 | Msa0012890:three_prime_UTR |
| CAGCAAGGAAAATAAGGCTT+AGG | 0.494373 | 1_1:+19866246 | None:intergenic |
| TTGAGATCAGACGAGCTTCG+AGG | 0.503364 | 1_1:-19863411 | Msa0012890:three_prime_UTR |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 1_1:-19865015 | Msa0012890:CDS |
| TTGTTGTTGTAATAGATATG+AGG | 0.511698 | 1_1:+19866540 | None:intergenic |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 1_1:-19863712 | Msa0012890:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 1_1:-19865158 | Msa0012890:CDS |
| ACGAGCTTCGAGGACTCTAA+AGG | 0.526366 | 1_1:-19863401 | Msa0012890:three_prime_UTR |
| GTTTCTGTGCCGTCATTGAT+CGG | 0.533004 | 1_1:-19863445 | Msa0012890:three_prime_UTR |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 1_1:+19865132 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 1_1:-19863621 | Msa0012890:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.550105 | 1_1:+19866453 | None:intergenic |
| ACAGGATTGATGGAGAAGGC+TGG | 0.551944 | 1_1:-19863638 | Msa0012890:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 1_1:-19863701 | Msa0012890:CDS |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 1_1:+19863695 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 1_1:+19865133 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 1_1:-19863698 | Msa0012890:CDS |
| AAACGATCACCGATCAATGA+CGG | 0.579387 | 1_1:+19863436 | None:intergenic |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 1_1:+19863571 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 1_1:+19866231 | None:intergenic |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 1_1:-19863622 | Msa0012890:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 1_1:-19866413 | Msa0012890:CDS |
| ATTAACAGGATTGATGGAGA+AGG | 0.628369 | 1_1:-19863642 | Msa0012890:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 1_1:+19864979 | None:intergenic |
| GGATGGTGATGAAAATAAAG+GGG | 0.648061 | 1_1:+19866561 | None:intergenic |
| CGAGGACTCTAAAGGGACGT+AGG | 0.652723 | 1_1:-19863393 | Msa0012890:three_prime_UTR |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 1_1:+19865019 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.660651 | 1_1:+19866495 | None:intergenic |
| TGTTGTAATAGATATGAGGA+TGG | 0.661661 | 1_1:+19866544 | None:intergenic |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 1_1:+19866396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATCAATTTAATTAA+GGG | + | chr1_1:19863977-19863996 | None:intergenic | 10.0% |
| !! | TTAGAAAATCAATTTAATTA+AGG | + | chr1_1:19863978-19863997 | None:intergenic | 10.0% |
| !!! | TGAATTTTAGAATTTAAATA+GGG | + | chr1_1:19865052-19865071 | None:intergenic | 10.0% |
| !!! | TTGAATTTTAGAATTTAAAT+AGG | + | chr1_1:19865053-19865072 | None:intergenic | 10.0% |
| !!! | CATTTTTCTTTATTAAATTT+AGG | - | chr1_1:19865532-19865551 | Msa0012890:intron | 10.0% |
| !!! | CAAAATTTTGAATATTTATA+AGG | - | chr1_1:19865796-19865815 | Msa0012890:intron | 10.0% |
| !!! | TAGTCTTTTTTTTTTTTGAA+AGG | + | chr1_1:19864184-19864203 | None:intergenic | 15.0% |
| !! | TTTATTCAATAAAAGATTGA+GGG | + | chr1_1:19864214-19864233 | None:intergenic | 15.0% |
| !!! | TTTTATTCAATAAAAGATTG+AGG | + | chr1_1:19864215-19864234 | None:intergenic | 15.0% |
| !!! | AAATGAAAGTGTATATTAAA+AGG | - | chr1_1:19864451-19864470 | Msa0012890:intron | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr1_1:19864748-19864767 | Msa0012890:intron | 15.0% |
| !!! | ATCATATATAAATGCTTTTT+AGG | - | chr1_1:19864977-19864996 | Msa0012890:intron | 15.0% |
| !!! | AAAAACAATCAAATAGTTTT+AGG | - | chr1_1:19865177-19865196 | Msa0012890:intron | 15.0% |
| !!! | TAATATTTTGATTGTTATCT+TGG | - | chr1_1:19865479-19865498 | Msa0012890:intron | 15.0% |
| !!! | AATATTTTGATTGTTATCTT+GGG | - | chr1_1:19865480-19865499 | Msa0012890:intron | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+GGG | + | chr1_1:19865607-19865626 | None:intergenic | 15.0% |
| !!! | AAAGTGTGATTTTATTTTAT+AGG | + | chr1_1:19865608-19865627 | None:intergenic | 15.0% |
| !!! | TGTTGATTCAAAATTTTATA+AGG | - | chr1_1:19865736-19865755 | Msa0012890:intron | 15.0% |
| !! | AATTAACCCTTAAATTTATT+AGG | - | chr1_1:19865830-19865849 | Msa0012890:intron | 15.0% |
| !! | ATTAACCCTTAAATTTATTA+GGG | - | chr1_1:19865831-19865850 | Msa0012890:intron | 15.0% |
| !!! | AAAAAAACTATCTTTTATCT+TGG | - | chr1_1:19865946-19865965 | Msa0012890:intron | 15.0% |
| !! | GATATATTCACTTTAATAAT+AGG | - | chr1_1:19866105-19866124 | Msa0012890:intron | 15.0% |
| !!! | TTTAATGTTTTATTGTTTGC+AGG | - | chr1_1:19863630-19863649 | Msa0012890:CDS | 20.0% |
| !!! | TGAGTTTTATACTTTAGAAA+TGG | + | chr1_1:19864267-19864286 | None:intergenic | 20.0% |
| !! | ATTCCATCGAATAAAATAAT+AGG | - | chr1_1:19864292-19864311 | Msa0012890:intron | 20.0% |
| !!! | GTTCCAAACATTTTTTATTT+TGG | - | chr1_1:19864501-19864520 | Msa0012890:intron | 20.0% |
| !! | TGACCAAAATAAAAAATGTT+TGG | + | chr1_1:19864507-19864526 | None:intergenic | 20.0% |
| !! | AAAGTGTATGTTTAGATTAA+GGG | + | chr1_1:19864665-19864684 | None:intergenic | 20.0% |
| !!! | ATTTCAATGTGTTTTTTTTG+AGG | - | chr1_1:19865076-19865095 | Msa0012890:CDS | 20.0% |
| !!! | TGTTTTTTTTGAGGTTTTAT+AGG | - | chr1_1:19865085-19865104 | Msa0012890:CDS | 20.0% |
| !!! | GTTTTTTTTGAGGTTTTATA+GGG | - | chr1_1:19865086-19865105 | Msa0012890:CDS | 20.0% |
| !!! | AAATAGTTTTAGGATATGTT+CGG | - | chr1_1:19865187-19865206 | Msa0012890:intron | 20.0% |
| !!! | ATATAAGCTTTTGAATAAGA+CGG | - | chr1_1:19865448-19865467 | Msa0012890:intron | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr1_1:19865576-19865595 | None:intergenic | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr1_1:19865577-19865596 | None:intergenic | 20.0% |
| !!! | AAAATTTCCATCAACATTTT+TGG | + | chr1_1:19865668-19865687 | None:intergenic | 20.0% |
| !!! | TGTTGATGGAAAAATTTTAT+AGG | - | chr1_1:19865704-19865723 | Msa0012890:intron | 20.0% |
| !!! | GTTGATGGAAAAATTTTATA+GGG | - | chr1_1:19865705-19865724 | Msa0012890:intron | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr1_1:19865764-19865783 | Msa0012890:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr1_1:19865765-19865784 | Msa0012890:intron | 20.0% |
| !! | TTAAGGGTTAATTAAGTAAA+TGG | + | chr1_1:19865823-19865842 | None:intergenic | 20.0% |
| !! | CATAACCCTAATAAATTTAA+GGG | + | chr1_1:19865839-19865858 | None:intergenic | 20.0% |
| !! | ATTGAAATTTCAACTATGTT+GGG | + | chr1_1:19865887-19865906 | None:intergenic | 20.0% |
| !! | AATTGAAATTTCAACTATGT+TGG | + | chr1_1:19865888-19865907 | None:intergenic | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr1_1:19866240-19866259 | Msa0012890:CDS | 20.0% |
| !! | GTAAACAAATCAATTGTATA+AGG | + | chr1_1:19866441-19866460 | None:intergenic | 20.0% |
| !!! | ATTTGTTTACTTTTCTGATT+GGG | - | chr1_1:19866451-19866470 | Msa0012890:CDS | 20.0% |
| !!! | TTCAAAGTGTTTTGAAAAAA+TGG | + | chr1_1:19866561-19866580 | None:intergenic | 20.0% |
| !!! | ATTTTTTCAAAACACTTTGA+AGG | - | chr1_1:19866560-19866579 | Msa0012890:five_prime_UTR | 20.0% |
| !! | TTGTTGTTGTAATAGATATG+AGG | + | chr1_1:19863381-19863400 | None:intergenic | 25.0% |
| ! | TATGTAACATGTGACAATAA+AGG | + | chr1_1:19863579-19863598 | None:intergenic | 25.0% |
| ! | AATTAAAGCATGTTTCAAAG+AGG | - | chr1_1:19863777-19863796 | Msa0012890:intron | 25.0% |
| ! | ATTAAAGCATGTTTCAAAGA+GGG | - | chr1_1:19863778-19863797 | Msa0012890:intron | 25.0% |
| !!! | GTTTTCTAGAAAGAGAAAAA+GGG | + | chr1_1:19863925-19863944 | None:intergenic | 25.0% |
| !!! | TGTTTTCTAGAAAGAGAAAA+AGG | + | chr1_1:19863926-19863945 | None:intergenic | 25.0% |
| ! | ATAAGATTTCATTTGCATAG+AGG | + | chr1_1:19864091-19864110 | None:intergenic | 25.0% |
| !!! | ACACCTATTATTTTATTCGA+TGG | + | chr1_1:19864298-19864317 | None:intergenic | 25.0% |
| !!! | AAAGAAAGTGTTAAAAAGAG+TGG | - | chr1_1:19864319-19864338 | Msa0012890:intron | 25.0% |
| !!! | TTTGGAACACTCTTTTTTTA+TGG | + | chr1_1:19864489-19864508 | None:intergenic | 25.0% |
| ! | TCTAAAGATTAGAAATGCTA+CGG | + | chr1_1:19864536-19864555 | None:intergenic | 25.0% |
| !! | AAAGTTGACAATCATGATTT+TGG | - | chr1_1:19864579-19864598 | Msa0012890:intron | 25.0% |
| ! | CAAAGTGTATGTTTAGATTA+AGG | + | chr1_1:19864666-19864685 | None:intergenic | 25.0% |
| !!! | CTTTTTAGGTAAAAGTAGTT+TGG | - | chr1_1:19864991-19865010 | Msa0012890:CDS | 25.0% |
| !! | GTCTTATTCAAAAGCTTATA+TGG | + | chr1_1:19865449-19865468 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTAACCATTTT+AGG | - | chr1_1:19865640-19865659 | Msa0012890:intron | 25.0% |
| !! | CATTTTCCTTAACCATTTTA+GGG | - | chr1_1:19865641-19865660 | Msa0012890:intron | 25.0% |
| !!! | TGTTGATGGAAATTTTTTAC+AGG | - | chr1_1:19865672-19865691 | Msa0012890:intron | 25.0% |
| !!! | GTTGATGGAAATTTTTTACA+GGG | - | chr1_1:19865673-19865692 | Msa0012890:intron | 25.0% |
| ! | GCATAACCCTAATAAATTTA+AGG | + | chr1_1:19865840-19865859 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTATGTTG+GGG | + | chr1_1:19865886-19865905 | None:intergenic | 25.0% |
| !! | TTGTGTTATTGTTTGCAAAA+TGG | + | chr1_1:19866013-19866032 | None:intergenic | 25.0% |
| !!! | TAGTCTAAAGTGTTTTGAAT+TGG | + | chr1_1:19866066-19866085 | None:intergenic | 25.0% |
| ! | ATATTGTTGAATAATTGCAG+TGG | - | chr1_1:19866137-19866156 | Msa0012890:intron | 25.0% |
| ! | TATTGTTGAATAATTGCAGT+GGG | - | chr1_1:19866138-19866157 | Msa0012890:intron | 25.0% |
| !!! | GATTTGTTTACTTTTCTGAT+TGG | - | chr1_1:19866450-19866469 | Msa0012890:CDS | 25.0% |
| ATAAAGGGGTAAAAATAGAG+AGG | + | chr1_1:19863346-19863365 | None:intergenic | 30.0% | |
| ! | AGGATGGTGATGAAAATAAA+GGG | + | chr1_1:19863361-19863380 | None:intergenic | 30.0% |
| TGTTGTAATAGATATGAGGA+TGG | + | chr1_1:19863377-19863396 | None:intergenic | 30.0% | |
| ! | AAACATACACTTTGTTATCG+TGG | - | chr1_1:19864672-19864691 | Msa0012890:intron | 30.0% |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr1_1:19864827-19864846 | Msa0012890:intron | 30.0% |
| !! | TTCTAAAATCCAAACTGCAT+AGG | - | chr1_1:19865126-19865145 | Msa0012890:CDS | 30.0% |
| ! | TCTAAAATCCAAACTGCATA+GGG | - | chr1_1:19865127-19865146 | Msa0012890:CDS | 30.0% |
| GGTTGTTTACAGAAAATTGA+AGG | - | chr1_1:19865208-19865227 | Msa0012890:intron | 30.0% | |
| AGCTTATATGGAAAACTACA+TGG | + | chr1_1:19865437-19865456 | None:intergenic | 30.0% | |
| ! | TTGATTGTTATCTTGGGTTT+TGG | - | chr1_1:19865486-19865505 | Msa0012890:intron | 30.0% |
| GAAAAATGAAACAGCGATTT+GGG | + | chr1_1:19865520-19865539 | None:intergenic | 30.0% | |
| AGAAAAATGAAACAGCGATT+TGG | + | chr1_1:19865521-19865540 | None:intergenic | 30.0% | |
| !!! | AACATTTTTGGTCCCTAAAA+TGG | + | chr1_1:19865656-19865675 | None:intergenic | 30.0% |
| AGTGAATATATCATGCATGA+AGG | + | chr1_1:19866097-19866116 | None:intergenic | 30.0% | |
| ACATCAGACAGAAACTAATT+TGG | - | chr1_1:19866321-19866340 | Msa0012890:intron | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr1_1:19866355-19866374 | Msa0012890:intron | 30.0% | |
| ! | GGATGGTGATGAAAATAAAG+GGG | + | chr1_1:19863360-19863379 | None:intergenic | 35.0% |
| ! | GAGGATGGTGATGAAAATAA+AGG | + | chr1_1:19863362-19863381 | None:intergenic | 35.0% |
| CCAAACAAGTATGAGTATGA+AGG | + | chr1_1:19863468-19863487 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr1_1:19863465-19863484 | Msa0012890:three_prime_UTR | 35.0% | |
| GGCTTAGGAACATCATTAAA+GGG | + | chr1_1:19863660-19863679 | None:intergenic | 35.0% | |
| AGGCTTAGGAACATCATTAA+AGG | + | chr1_1:19863661-19863680 | None:intergenic | 35.0% | |
| TCTAGAAAGAGAAAAAGGGA+GGG | + | chr1_1:19863921-19863940 | None:intergenic | 35.0% | |
| ! | TTCTAGAAAGAGAAAAAGGG+AGG | + | chr1_1:19863922-19863941 | None:intergenic | 35.0% |
| ACATACACGTTAGTTCACAT+GGG | + | chr1_1:19864131-19864150 | None:intergenic | 35.0% | |
| AACATACACGTTAGTTCACA+TGG | + | chr1_1:19864132-19864151 | None:intergenic | 35.0% | |
| TAATATAAGCCACCACTTCT+TGG | - | chr1_1:19864236-19864255 | Msa0012890:intron | 35.0% | |
| AATATAAGCCACCACTTCTT+GGG | - | chr1_1:19864237-19864256 | Msa0012890:intron | 35.0% | |
| TGAATCTATCTCTTGTGACA+TGG | + | chr1_1:19864372-19864391 | None:intergenic | 35.0% | |
| TAGATTAAGGGTGACTTTGA+AGG | + | chr1_1:19864653-19864672 | None:intergenic | 35.0% | |
| AGCTATTATGGCATTCCAAA+CGG | - | chr1_1:19864760-19864779 | Msa0012890:intron | 35.0% | |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr1_1:19864799-19864818 | Msa0012890:intron | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr1_1:19864836-19864855 | Msa0012890:intron | 35.0% |
| GCGGAATATTTAGCATATCA+TGG | + | chr1_1:19864883-19864902 | None:intergenic | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr1_1:19864903-19864922 | Msa0012890:intron | 35.0% | |
| ! | TATAGGGTTTTCTTGCAGTT+CGG | - | chr1_1:19865102-19865121 | Msa0012890:CDS | 35.0% |
| ! | CACTCTTTTACTCATCATCT+TGG | - | chr1_1:19865405-19865424 | Msa0012890:intron | 35.0% |
| TGGTTAAGGAAAATGTCACA+GGG | + | chr1_1:19865636-19865655 | None:intergenic | 35.0% | |
| ATGGTTAAGGAAAATGTCAC+AGG | + | chr1_1:19865637-19865656 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGGTTA+AGG | + | chr1_1:19865650-19865669 | None:intergenic | 35.0% | |
| TTAGGGACCAAAAATGTTGA+TGG | - | chr1_1:19865658-19865677 | Msa0012890:intron | 35.0% | |
| ACAGGGACTAAAAATGTTGA+TGG | - | chr1_1:19865690-19865709 | Msa0012890:intron | 35.0% | |
| AGGGTTATGCAAATGATATG+TGG | - | chr1_1:19865850-19865869 | Msa0012890:intron | 35.0% | |
| GTTATGCAAATGATATGTGG+TGG | - | chr1_1:19865853-19865872 | Msa0012890:intron | 35.0% | |
| AAATGATATGTGGTGGTTTG+AGG | - | chr1_1:19865860-19865879 | Msa0012890:intron | 35.0% | |
| AATATATCATGCATGAAGGC+TGG | + | chr1_1:19866093-19866112 | None:intergenic | 35.0% | |
| !! | GAATAATTGCAGTGGGTTTT+TGG | - | chr1_1:19866145-19866164 | Msa0012890:intron | 35.0% |
| !!! | TTTTGGCTTGGTTACATTCT+TGG | - | chr1_1:19866162-19866181 | Msa0012890:intron | 35.0% |
| ATTAACAGGATTGATGGAGA+AGG | - | chr1_1:19866276-19866295 | Msa0012890:intron | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr1_1:19866350-19866369 | None:intergenic | 35.0% | |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr1_1:19863416-19863435 | Msa0012890:three_prime_UTR | 40.0% |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr1_1:19863421-19863440 | Msa0012890:three_prime_UTR | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr1_1:19863426-19863445 | None:intergenic | 40.0% | |
| ! | TCAGGTTTGGCTCATTTGTT+TGG | - | chr1_1:19863434-19863453 | Msa0012890:three_prime_UTR | 40.0% |
| ! | TGGTTGTTACATTTTCGCGA+AGG | - | chr1_1:19863485-19863504 | Msa0012890:three_prime_UTR | 40.0% |
| ! | GGTTGTTACATTTTCGCGAA+GGG | - | chr1_1:19863486-19863505 | Msa0012890:three_prime_UTR | 40.0% |
| CAGCAAGGAAAATAAGGCTT+AGG | + | chr1_1:19863675-19863694 | None:intergenic | 40.0% | |
| !!! | CTAAGCCTTATTTTCCTTGC+TGG | - | chr1_1:19863673-19863692 | Msa0012890:CDS | 40.0% |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr1_1:19863681-19863700 | None:intergenic | 40.0% | |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr1_1:19863679-19863698 | Msa0012890:CDS | 40.0% |
| TAGTAAGATATGACTCCGAG+AGG | + | chr1_1:19863724-19863743 | None:intergenic | 40.0% | |
| ! | GGGTGACTTTGAAGGAAATA+GGG | + | chr1_1:19864645-19864664 | None:intergenic | 40.0% |
| ! | AGGGTGACTTTGAAGGAAAT+AGG | + | chr1_1:19864646-19864665 | None:intergenic | 40.0% |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr1_1:19864788-19864807 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr1_1:19864789-19864808 | None:intergenic | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr1_1:19864902-19864921 | None:intergenic | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr1_1:19864908-19864927 | Msa0012890:intron | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr1_1:19864932-19864951 | Msa0012890:intron | 40.0% | |
| ! | TGTTGCTTACTTGCTTTGCA+CGG | - | chr1_1:19865382-19865401 | Msa0012890:intron | 40.0% |
| TTGGTTACATTCTTGGTTCC+TGG | - | chr1_1:19866169-19866188 | Msa0012890:intron | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr1_1:19866262-19866281 | Msa0012890:CDS | 40.0% | |
| TGCTGCATTAACAGGATTGA+TGG | - | chr1_1:19866270-19866289 | Msa0012890:intron | 40.0% | |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr1_1:19866334-19866353 | Msa0012890:intron | 40.0% | |
| AAACGATCACCGATCAATGA+CGG | + | chr1_1:19866485-19866504 | None:intergenic | 40.0% | |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr1_1:19863509-19863528 | Msa0012890:three_prime_UTR | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr1_1:19863690-19863709 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr1_1:19863721-19863740 | None:intergenic | 45.0% | |
| GAAATGGATCACCCAAGAAG+TGG | + | chr1_1:19864251-19864270 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr1_1:19864783-19864802 | Msa0012890:intron | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr1_1:19864899-19864918 | Msa0012890:intron | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr1_1:19864942-19864961 | None:intergenic | 45.0% | |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr1_1:19864940-19864959 | Msa0012890:intron | 45.0% |
| !!! | ATTGCAGTGGGTTTTTGGCT+TGG | - | chr1_1:19866150-19866169 | Msa0012890:intron | 45.0% |
| TTACCACCAACTTTGTGCCA+TGG | + | chr1_1:19866226-19866245 | None:intergenic | 45.0% | |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr1_1:19866296-19866315 | Msa0012890:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr1_1:19866297-19866316 | Msa0012890:intron | 45.0% |
| GTTTCTGTGCCGTCATTGAT+CGG | - | chr1_1:19866473-19866492 | Msa0012890:CDS | 45.0% | |
| !! | ATTAAAATAATTAATATACA+TGG | - | chr1_1:19864020-19864039 | Msa0012890:intron | 5.0% |
| !!! | ATTTTTCTTTATTAAATTTA+GGG | - | chr1_1:19865533-19865552 | Msa0012890:intron | 5.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr1_1:19863505-19863524 | Msa0012890:three_prime_UTR | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr1_1:19863525-19863544 | None:intergenic | 50.0% | |
| ATGGATCACCCAAGAAGTGG+TGG | + | chr1_1:19864248-19864267 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr1_1:19865151-19865170 | Msa0012890:CDS | 50.0% | |
| CTTGTTGCATCTTGTGCTCC+AGG | + | chr1_1:19866190-19866209 | None:intergenic | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr1_1:19866206-19866225 | Msa0012890:intron | 50.0% |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr1_1:19866217-19866236 | Msa0012890:intron | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr1_1:19866220-19866239 | Msa0012890:intron | 50.0% | |
| ACAGGATTGATGGAGAAGGC+TGG | - | chr1_1:19866280-19866299 | Msa0012890:intron | 50.0% | |
| TTGAGATCAGACGAGCTTCG+AGG | - | chr1_1:19866507-19866526 | Msa0012890:exon | 50.0% | |
| ACGAGCTTCGAGGACTCTAA+AGG | - | chr1_1:19866517-19866536 | Msa0012890:exon | 50.0% | |
| CGAGCTTCGAGGACTCTAAA+GGG | - | chr1_1:19866518-19866537 | Msa0012890:exon | 50.0% | |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr1_1:19863706-19863725 | Msa0012890:CDS | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr1_1:19864778-19864797 | None:intergenic | 55.0% |
| GGGCACGCGAGAAACTTACA+GGG | + | chr1_1:19865032-19865051 | None:intergenic | 55.0% | |
| AGGGCACGCGAGAAACTTAC+AGG | + | chr1_1:19865033-19865052 | None:intergenic | 55.0% | |
| ! | CGAGGACTCTAAAGGGACGT+AGG | - | chr1_1:19866525-19866544 | Msa0012890:five_prime_UTR | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr1_1:19865138-19865157 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr1_1:19865147-19865166 | Msa0012890:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 19863314 | 19866626 | 19863314 | ID=Msa0012890;Name=Msa0012890 |
| chr1_1 | mRNA | 19863314 | 19866626 | 19863314 | ID=Msa0012890-mRNA-1;Parent=Msa0012890;Name=Msa0012890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=102|1|1|1|1|1|4|215|211 |
| chr1_1 | exon | 19863314 | 19863783 | 19863314 | ID=Msa0012890-mRNA-1:exon:7110;Parent=Msa0012890-mRNA-1 |
| chr1_1 | exon | 19864979 | 19865178 | 19864979 | ID=Msa0012890-mRNA-1:exon:7109;Parent=Msa0012890-mRNA-1 |
| chr1_1 | exon | 19866240 | 19866288 | 19866240 | ID=Msa0012890-mRNA-1:exon:7108;Parent=Msa0012890-mRNA-1 |
| chr1_1 | exon | 19866393 | 19866626 | 19866393 | ID=Msa0012890-mRNA-1:exon:7107;Parent=Msa0012890-mRNA-1 |
| chr1_1 | five_prime_UTR | 19866525 | 19866626 | 19866525 | ID=Msa0012890-mRNA-1:five_prime_utr;Parent=Msa0012890-mRNA-1 |
| chr1_1 | CDS | 19866393 | 19866524 | 19866393 | ID=Msa0012890-mRNA-1:cds;Parent=Msa0012890-mRNA-1 |
| chr1_1 | CDS | 19866240 | 19866288 | 19866240 | ID=Msa0012890-mRNA-1:cds;Parent=Msa0012890-mRNA-1 |
| chr1_1 | CDS | 19864979 | 19865178 | 19864979 | ID=Msa0012890-mRNA-1:cds;Parent=Msa0012890-mRNA-1 |
| chr1_1 | CDS | 19863529 | 19863783 | 19863529 | ID=Msa0012890-mRNA-1:cds;Parent=Msa0012890-mRNA-1 |
| chr1_1 | three_prime_UTR | 19863314 | 19863528 | 19863314 | ID=Msa0012890-mRNA-1:three_prime_utr;Parent=Msa0012890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
