Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152820 | sp|Q67ZF6|ACFR3_ARATH | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.38e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152820 | A0A072VRC8 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 1.73e-132 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012890 | Msa0152820 | 0.860091 | 2.629764e-63 | -8.615850e-47 |
| Msa0017510 | Msa0152820 | 0.801761 | 7.731901e-49 | -8.615850e-47 |
| Msa0061850 | Msa0152820 | 0.916489 | 1.675084e-85 | -8.615850e-47 |
| Msa0110970 | Msa0152820 | 0.800916 | 1.151420e-48 | -8.615850e-47 |
| Msa0152820 | Msa0157290 | 0.802095 | 6.600110e-49 | -8.615850e-47 |
| Msa0152820 | Msa0363200 | 0.802387 | 5.748107e-49 | -8.615850e-47 |
| Msa0152820 | Msa0432380 | 0.802278 | 6.051390e-49 | -8.615850e-47 |
| Msa0152820 | Msa0823820 | 0.806227 | 9.111764e-50 | -8.615850e-47 |
| Msa0152820 | Msa0863010 | 0.803306 | 3.713327e-49 | -8.615850e-47 |
| Msa0152820 | Msa0880140 | 0.801463 | 8.896914e-49 | -8.615850e-47 |
| Msa0152820 | Msa1031930 | 0.821037 | 4.995036e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152820 | MtrunA17_Chr1g0161941 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 3.33e-136 | 380 |
| Msa0152820 | MtrunA17_Chr8g0375991 | 60.476 | 210 | 81 | 2 | 1 | 210 | 1 | 208 | 8.14e-89 | 260 |
| Msa0152820 | MtrunA17_Chr1g0161921 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 4.82e-56 | 177 |
| Msa0152820 | MtrunA17_Chr1g0203371 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 4.08e-55 | 175 |
| Msa0152820 | MtrunA17_Chr6g0456901 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 4.98e-42 | 142 |
| Msa0152820 | MtrunA17_Chr5g0422371 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 1.01e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152820 | AT1G14730.1 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.44e-73 | 221 |
| Msa0152820 | AT4G25570.1 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.44e-53 | 171 |
| Msa0152820 | AT4G25570.2 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.65e-52 | 169 |
| Msa0152820 | AT5G38630.1 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 5.88e-45 | 149 |
| Msa0152820 | AT1G26100.1 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 1.22e-24 | 97.4 |
Find 58 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.165329 | 1_4:-15779914 | Msa0152820:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 1_4:-15780106 | Msa0152820:intron |
| TTGGTTACATTCTTGGTTCC+TGG | 0.272137 | 1_4:-15778993 | Msa0152820:CDS |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 1_4:-15779955 | Msa0152820:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.288180 | 1_4:-15778900 | Msa0152820:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 1_4:-15778807 | Msa0152820:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 1_4:+15781080 | None:intergenic |
| CCTTCATACTCATACTTGTT+TGG | 0.309677 | 1_4:-15781291 | Msa0152820:CDS |
| AGGCTTAGGAACATCATTAA+AGG | 0.317240 | 1_4:+15781100 | None:intergenic |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 1_4:-15779922 | Msa0152820:CDS |
| TCAGGTTTGGCTCATTTGTT+TGG | 0.341278 | 1_4:-15781322 | Msa0152820:CDS |
| GAGGATGGTGATGAAAATAA+AGG | 0.360242 | 1_4:+15781397 | None:intergenic |
| GTAAACAAATCAATTGTATA+AGG | 0.363639 | 1_4:+15778724 | None:intergenic |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 1_4:+15780079 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 1_4:-15778841 | Msa0152820:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 1_4:-15778828 | Msa0152820:CDS |
| CTTGTTGCATCTTGTGCTCC+AGG | 0.406946 | 1_4:+15778975 | None:intergenic |
| AGGATGGTGATGAAAATAAA+GGG | 0.411631 | 1_4:+15781398 | None:intergenic |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 1_4:-15780055 | Msa0152820:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 1_4:-15779946 | Msa0152820:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 1_4:-15781335 | Msa0152820:CDS |
| TGCTGCATTAACAGGGTTGA+TGG | 0.454100 | 1_4:-15778892 | Msa0152820:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 1_4:-15780071 | Msa0152820:CDS |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 1_4:-15781247 | Msa0152820:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 1_4:+15779974 | None:intergenic |
| CGAGCTTCGAGGACTCTAAA+GGG | 0.477005 | 1_4:-15778644 | Msa0152820:three_prime_UTR |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 1_4:-15781340 | Msa0152820:CDS |
| GGCTTAGGAACATCATTAAA+GGG | 0.482631 | 1_4:+15781101 | None:intergenic |
| CAGCAAGGAAAATAAGGCTT+AGG | 0.494373 | 1_4:+15781086 | None:intergenic |
| TTGAGATCAGACGAGCTTCG+AGG | 0.503364 | 1_4:-15778655 | Msa0152820:three_prime_UTR |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 1_4:-15779951 | Msa0152820:CDS |
| CGAGGACTCTAAAGGGATGT+AGG | 0.510837 | 1_4:-15778637 | Msa0152820:three_prime_UTR |
| TTGTTGTTGTAATAGATATG+AGG | 0.511698 | 1_4:+15781378 | None:intergenic |
| ACGAGCTTCGAGGACTCTAA+AGG | 0.513947 | 1_4:-15778645 | Msa0152820:three_prime_UTR |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 1_4:-15778956 | Msa0152820:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 1_4:-15780094 | Msa0152820:CDS |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 1_4:+15780068 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 1_4:-15778865 | Msa0152820:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.550105 | 1_4:+15781291 | None:intergenic |
| ACAGGGTTGATGGAGAAGGC+TGG | 0.560279 | 1_4:-15778882 | Msa0152820:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 1_4:-15778945 | Msa0152820:CDS |
| GTTTCTGTGCCGTCATTGAT+CGG | 0.568465 | 1_4:-15778689 | Msa0152820:three_prime_UTR |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 1_4:+15778939 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 1_4:+15780069 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 1_4:-15778942 | Msa0152820:CDS |
| AAACGATCACCGATCAATGA+CGG | 0.579387 | 1_4:+15778680 | None:intergenic |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 1_4:+15778815 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 1_4:+15781071 | None:intergenic |
| ATTAACAGGGTTGATGGAGA+AGG | 0.597536 | 1_4:-15778886 | Msa0152820:CDS |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 1_4:-15778866 | Msa0152820:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 1_4:-15781251 | Msa0152820:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 1_4:+15779915 | None:intergenic |
| GGATGGTGATGAAAATAAAG+GGG | 0.648061 | 1_4:+15781399 | None:intergenic |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 1_4:+15779955 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.660651 | 1_4:+15781333 | None:intergenic |
| TGTTGTAATAGATATGAGGA+TGG | 0.661661 | 1_4:+15781382 | None:intergenic |
| CAATATGTGCTGCATTAACA+GGG | 0.682347 | 1_4:-15778899 | Msa0152820:CDS |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 1_4:+15781234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATCAATTTAATTAA+GGG | + | chr1_4:15779186-15779205 | None:intergenic | 10.0% |
| !! | TTAGAAAATCAATTTAATTA+AGG | + | chr1_4:15779187-15779206 | None:intergenic | 10.0% |
| !!! | TGAATTTTAGAATTTAAATA+GGG | + | chr1_4:15780197-15780216 | None:intergenic | 10.0% |
| !!! | TTGAATTTTAGAATTTAAAT+AGG | + | chr1_4:15780198-15780217 | None:intergenic | 10.0% |
| !! | TTTATTCAATAAAAGATTGA+GGG | + | chr1_4:15779396-15779415 | None:intergenic | 15.0% |
| !!! | TTTTATTCAATAAAAGATTG+AGG | + | chr1_4:15779397-15779416 | None:intergenic | 15.0% |
| !! | AATATATCTCAATTTATTCA+TGG | - | chr1_4:15779858-15779877 | Msa0152820:intron | 15.0% |
| !! | ATATATCTCAATTTATTCAT+GGG | - | chr1_4:15779859-15779878 | Msa0152820:intron | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr1_4:15779892-15779911 | Msa0152820:intron | 15.0% |
| !!! | TCATATATAAATGCTTTTTT+AGG | - | chr1_4:15780122-15780141 | Msa0152820:intron | 15.0% |
| !!! | AAAAACAATCAAATAGTTTT+AGG | - | chr1_4:15780321-15780340 | Msa0152820:intron | 15.0% |
| !!! | TTTAATGTTTTATTGTTTGC+AGG | - | chr1_4:15778870-15778889 | Msa0152820:CDS | 20.0% |
| !!! | TGTTTTCTAGAAAGAAAAAA+GGG | + | chr1_4:15779135-15779154 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAGAAAGAAAAA+AGG | + | chr1_4:15779136-15779155 | None:intergenic | 20.0% |
| !!! | TGAGTTTTATACTTTAGAAA+TGG | + | chr1_4:15779451-15779470 | None:intergenic | 20.0% |
| !! | ATTCCATCGAATAAAATAAT+AGG | - | chr1_4:15779476-15779495 | Msa0152820:intron | 20.0% |
| !!! | GAAGTGTCTTTTAAATTTAA+AGG | + | chr1_4:15779536-15779555 | None:intergenic | 20.0% |
| !!! | TAACTTTTACTAAAATCGTA+AGG | + | chr1_4:15779737-15779756 | None:intergenic | 20.0% |
| !! | TAAGTGTATGTTTAGATTAA+CGG | + | chr1_4:15779811-15779830 | None:intergenic | 20.0% |
| !!! | TTTTTTAGGTAAAAGTAGTT+TGG | - | chr1_4:15780136-15780155 | Msa0152820:intron | 20.0% |
| !!! | TATTTCAATGTGTTTTTTTG+AGG | - | chr1_4:15780220-15780239 | Msa0152820:intron | 20.0% |
| !!! | TGTTTTTTTGAGGTTTTATA+GGG | - | chr1_4:15780230-15780249 | Msa0152820:intron | 20.0% |
| !!! | AAATAGTTTTAGGATATGTT+CGG | - | chr1_4:15780331-15780350 | Msa0152820:intron | 20.0% |
| !!! | ATATAAGCTTTTGAATAAGA+CGG | - | chr1_4:15780582-15780601 | Msa0152820:intron | 20.0% |
| !! | TAATATCTTGATTGTTATCT+TGG | - | chr1_4:15780613-15780632 | Msa0152820:intron | 20.0% |
| !! | AATATCTTGATTGTTATCTT+GGG | - | chr1_4:15780614-15780633 | Msa0152820:intron | 20.0% |
| !! | TAAAAGAACTATCATTATCT+TGG | - | chr1_4:15780781-15780800 | Msa0152820:intron | 20.0% |
| !!! | GATATGTTGACTTTAATAAT+AGG | - | chr1_4:15780941-15780960 | Msa0152820:intron | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr1_4:15781076-15781095 | Msa0152820:intron | 20.0% |
| !! | GTAAACAAATCAATTGTATA+AGG | + | chr1_4:15781277-15781296 | None:intergenic | 20.0% |
| !! | TTGTTGTTGTAATAGATATG+AGG | + | chr1_4:15778623-15778642 | None:intergenic | 25.0% |
| !!! | TTTTCTAGAAAGAAAAAAGG+GGG | + | chr1_4:15779133-15779152 | None:intergenic | 25.0% |
| !!! | GTTTTCTAGAAAGAAAAAAG+GGG | + | chr1_4:15779134-15779153 | None:intergenic | 25.0% |
| ! | ATAAGATTTCATTTGCATAG+AGG | + | chr1_4:15779300-15779319 | None:intergenic | 25.0% |
| !!! | ACACCTATTATTTTATTCGA+TGG | + | chr1_4:15779482-15779501 | None:intergenic | 25.0% |
| !!! | AAAGAAAGTGTTAAAAAGAG+TGG | - | chr1_4:15779503-15779522 | Msa0152820:intron | 25.0% |
| !!! | GTGTTTTTTTGAGGTTTTAT+AGG | - | chr1_4:15780229-15780248 | Msa0152820:intron | 25.0% |
| !! | GTCTTATTCAAAAGCTTATA+TGG | + | chr1_4:15780583-15780602 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTATGTTG+AGG | + | chr1_4:15780724-15780743 | None:intergenic | 25.0% |
| !! | TTGTGTTATTGTTTGCAAAA+TGG | + | chr1_4:15780848-15780867 | None:intergenic | 25.0% |
| !!! | AGTCTAAAGTGTTTTTGAAT+TGG | + | chr1_4:15780901-15780920 | None:intergenic | 25.0% |
| !! | ATATTGTTGATTAATTGCAG+TGG | - | chr1_4:15780973-15780992 | Msa0152820:intron | 25.0% |
| !! | TATTGTTGATTAATTGCAGT+GGG | - | chr1_4:15780974-15780993 | Msa0152820:intron | 25.0% |
| !! | TTCAAAGTGTTTCGAAAAAA+TGG | + | chr1_4:15781399-15781418 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGAAACACTTTGA+AGG | - | chr1_4:15781398-15781417 | Msa0152820:five_prime_UTR | 25.0% |
| ATAAAGGGGTAAAAATAGAG+AGG | + | chr1_4:15778588-15778607 | None:intergenic | 30.0% | |
| ! | AGGATGGTGATGAAAATAAA+GGG | + | chr1_4:15778603-15778622 | None:intergenic | 30.0% |
| TGTTGTAATAGATATGAGGA+TGG | + | chr1_4:15778619-15778638 | None:intergenic | 30.0% | |
| CTCTTCGAAACATACTTTAA+TGG | + | chr1_4:15779021-15779040 | None:intergenic | 30.0% | |
| ! | TTTCTAGAAAGAAAAAAGGG+GGG | + | chr1_4:15779132-15779151 | None:intergenic | 30.0% |
| CACTTCATATAAACATACAC+CGG | + | chr1_4:15779354-15779373 | None:intergenic | 30.0% | |
| TGAATATATCTCTCTTCACA+TGG | + | chr1_4:15779558-15779577 | None:intergenic | 30.0% | |
| !!! | TGTCATGGACACATTTTTTA+TGG | + | chr1_4:15779668-15779687 | None:intergenic | 30.0% |
| TCTAAACACTAGAAATGTCA+TGG | + | chr1_4:15779683-15779702 | None:intergenic | 30.0% | |
| TCTCAATTTATTCATGGGTT+TGG | - | chr1_4:15779864-15779883 | Msa0152820:intron | 30.0% | |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr1_4:15779971-15779990 | Msa0152820:CDS | 30.0% |
| !! | TTCTAAAATCCAAACTGCAT+AGG | - | chr1_4:15780270-15780289 | Msa0152820:intron | 30.0% |
| ! | TCTAAAATCCAAACTGCATA+GGG | - | chr1_4:15780271-15780290 | Msa0152820:intron | 30.0% |
| GGTTGTTTACAGAAAATTGA+AGG | - | chr1_4:15780352-15780371 | Msa0152820:intron | 30.0% | |
| !! | ACAGAAAATTGAAGGTGTTT+AGG | - | chr1_4:15780360-15780379 | Msa0152820:intron | 30.0% |
| AGCTTATATGGAAAACTACA+TGG | + | chr1_4:15780571-15780590 | None:intergenic | 30.0% | |
| ! | TTGATTGTTATCTTGGGTTT+TGG | - | chr1_4:15780620-15780639 | Msa0152820:intron | 30.0% |
| AAAAAAGAAACAGCGATTTG+GGG | + | chr1_4:15780653-15780672 | None:intergenic | 30.0% | |
| GAAAAAAGAAACAGCGATTT+GGG | + | chr1_4:15780654-15780673 | None:intergenic | 30.0% | |
| AGAAAAAAGAAACAGCGATT+TGG | + | chr1_4:15780655-15780674 | None:intergenic | 30.0% | |
| !!! | TTTTGGATTGGTTACATTCT+TGG | - | chr1_4:15780998-15781017 | Msa0152820:intron | 30.0% |
| ACATCAGACAGAAACTAATT+TGG | - | chr1_4:15781157-15781176 | Msa0152820:intron | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr1_4:15781191-15781210 | Msa0152820:intron | 30.0% | |
| ! | GGATGGTGATGAAAATAAAG+GGG | + | chr1_4:15778602-15778621 | None:intergenic | 35.0% |
| ! | GAGGATGGTGATGAAAATAA+AGG | + | chr1_4:15778604-15778623 | None:intergenic | 35.0% |
| CCAAACAAGTATGAGTATGA+AGG | + | chr1_4:15778710-15778729 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr1_4:15778707-15778726 | Msa0152820:three_prime_UTR | 35.0% | |
| GGCTTAGGAACATCATTAAA+GGG | + | chr1_4:15778900-15778919 | None:intergenic | 35.0% | |
| AGGCTTAGGAACATCATTAA+AGG | + | chr1_4:15778901-15778920 | None:intergenic | 35.0% | |
| TCTCAATGGACACTTTCATT+TGG | + | chr1_4:15779636-15779655 | None:intergenic | 35.0% | |
| TATGGTCGAAATCATCTCAA+TGG | + | chr1_4:15779650-15779669 | None:intergenic | 35.0% | |
| TAGATTAACGGTGACTTTGA+AGG | + | chr1_4:15779799-15779818 | None:intergenic | 35.0% | |
| AAACATACACTTAGTAGTCG+TGG | - | chr1_4:15779818-15779837 | Msa0152820:intron | 35.0% | |
| AGCTATTATGGCATTCCAAA+CGG | - | chr1_4:15779904-15779923 | Msa0152820:intron | 35.0% | |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr1_4:15779943-15779962 | Msa0152820:CDS | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr1_4:15779980-15779999 | Msa0152820:CDS | 35.0% |
| GCGGAATATTTAGCATATCA+TGG | + | chr1_4:15780027-15780046 | None:intergenic | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr1_4:15780047-15780066 | Msa0152820:CDS | 35.0% | |
| ! | TATAGGGTTTTCTTGCAGTT+CGG | - | chr1_4:15780246-15780265 | Msa0152820:intron | 35.0% |
| ! | CACTCTTTTACTCATCATCT+TGG | - | chr1_4:15780539-15780558 | Msa0152820:intron | 35.0% |
| AGGGTTATGCAAATGATATG+TGG | - | chr1_4:15780688-15780707 | Msa0152820:intron | 35.0% | |
| GTTATGCAAATGATATGTGG+TGG | - | chr1_4:15780691-15780710 | Msa0152820:intron | 35.0% | |
| AAATGATATGTGGTGGTTTG+AGG | - | chr1_4:15780698-15780717 | Msa0152820:intron | 35.0% | |
| !! | GATTAATTGCAGTGGGTTTT+TGG | - | chr1_4:15780981-15781000 | Msa0152820:intron | 35.0% |
| CAATATGTGCTGCATTAACA+GGG | - | chr1_4:15781099-15781118 | Msa0152820:CDS | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr1_4:15781186-15781205 | None:intergenic | 35.0% | |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr1_4:15778658-15778677 | Msa0152820:three_prime_UTR | 40.0% |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr1_4:15778663-15778682 | Msa0152820:three_prime_UTR | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr1_4:15778668-15778687 | None:intergenic | 40.0% | |
| ! | TCAGGTTTGGCTCATTTGTT+TGG | - | chr1_4:15778676-15778695 | Msa0152820:three_prime_UTR | 40.0% |
| ! | TGGTTGTTACATTTTCGCGA+AGG | - | chr1_4:15778727-15778746 | Msa0152820:three_prime_UTR | 40.0% |
| ! | GGTTGTTACATTTTCGCGAA+GGG | - | chr1_4:15778728-15778747 | Msa0152820:three_prime_UTR | 40.0% |
| CAGCAAGGAAAATAAGGCTT+AGG | + | chr1_4:15778915-15778934 | None:intergenic | 40.0% | |
| !!! | CTAAGCCTTATTTTCCTTGC+TGG | - | chr1_4:15778913-15778932 | Msa0152820:CDS | 40.0% |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr1_4:15778921-15778940 | None:intergenic | 40.0% | |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr1_4:15778919-15778938 | Msa0152820:CDS | 40.0% |
| TAGTAAGATATGACTCCGAG+AGG | + | chr1_4:15778964-15778983 | None:intergenic | 40.0% | |
| TTTGTCCCATGTGAACTAAC+CGG | - | chr1_4:15779332-15779351 | Msa0152820:intron | 40.0% | |
| ! | ATACACCGGTTAGTTCACAT+GGG | + | chr1_4:15779340-15779359 | None:intergenic | 40.0% |
| ! | CGGTGACTTTGAAGGAAATA+GGG | + | chr1_4:15779791-15779810 | None:intergenic | 40.0% |
| ! | ACGGTGACTTTGAAGGAAAT+AGG | + | chr1_4:15779792-15779811 | None:intergenic | 40.0% |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr1_4:15779932-15779951 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr1_4:15779933-15779952 | None:intergenic | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr1_4:15780046-15780065 | None:intergenic | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr1_4:15780052-15780071 | Msa0152820:CDS | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr1_4:15780076-15780095 | Msa0152820:CDS | 40.0% | |
| AACATATCATGCATGAACGC+TGG | + | chr1_4:15780929-15780948 | None:intergenic | 40.0% | |
| !! | ATTGCAGTGGGTTTTTGGAT+TGG | - | chr1_4:15780986-15781005 | Msa0152820:intron | 40.0% |
| TTGGTTACATTCTTGGTTCC+TGG | - | chr1_4:15781005-15781024 | Msa0152820:intron | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr1_4:15781098-15781117 | Msa0152820:CDS | 40.0% | |
| !! | ATTAACAGGGTTGATGGAGA+AGG | - | chr1_4:15781112-15781131 | Msa0152820:intron | 40.0% |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr1_4:15781170-15781189 | Msa0152820:intron | 40.0% | |
| AAACGATCACCGATCAATGA+CGG | + | chr1_4:15781321-15781340 | None:intergenic | 40.0% | |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr1_4:15778751-15778770 | Msa0152820:three_prime_UTR | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr1_4:15778930-15778949 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr1_4:15778961-15778980 | None:intergenic | 45.0% | |
| ! | CATACACCGGTTAGTTCACA+TGG | + | chr1_4:15779341-15779360 | None:intergenic | 45.0% |
| ATATAAGTCCCACCGCTTCT+TGG | - | chr1_4:15779420-15779439 | Msa0152820:intron | 45.0% | |
| TATAAGTCCCACCGCTTCTT+GGG | - | chr1_4:15779421-15779440 | Msa0152820:intron | 45.0% | |
| GAAATGGATCACCCAAGAAG+CGG | + | chr1_4:15779435-15779454 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr1_4:15779927-15779946 | Msa0152820:CDS | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr1_4:15780043-15780062 | Msa0152820:CDS | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr1_4:15780086-15780105 | None:intergenic | 45.0% | |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr1_4:15780084-15780103 | Msa0152820:CDS | 45.0% |
| TTACCACCAACTTTGTGCCA+TGG | + | chr1_4:15781062-15781081 | None:intergenic | 45.0% | |
| TGCTGCATTAACAGGGTTGA+TGG | - | chr1_4:15781106-15781125 | Msa0152820:CDS | 45.0% | |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr1_4:15781132-15781151 | Msa0152820:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr1_4:15781133-15781152 | Msa0152820:intron | 45.0% |
| GTTTCTGTGCCGTCATTGAT+CGG | - | chr1_4:15781309-15781328 | Msa0152820:CDS | 45.0% | |
| !! | ATTAAAATAATTAATATACA+TGG | - | chr1_4:15779229-15779248 | Msa0152820:intron | 5.0% |
| !!! | TTTTTCTTTATTAATTTATT+AGG | - | chr1_4:15780668-15780687 | Msa0152820:intron | 5.0% |
| !!! | TTTTCTTTATTAATTTATTA+GGG | - | chr1_4:15780669-15780688 | Msa0152820:intron | 5.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr1_4:15778747-15778766 | Msa0152820:three_prime_UTR | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr1_4:15778767-15778786 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr1_4:15780295-15780314 | Msa0152820:intron | 50.0% | |
| CTTGTTGCATCTTGTGCTCC+AGG | + | chr1_4:15781026-15781045 | None:intergenic | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr1_4:15781042-15781061 | Msa0152820:intron | 50.0% |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr1_4:15781053-15781072 | Msa0152820:intron | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr1_4:15781056-15781075 | Msa0152820:intron | 50.0% | |
| TTGAGATCAGACGAGCTTCG+AGG | - | chr1_4:15781343-15781362 | Msa0152820:CDS | 50.0% | |
| ACGAGCTTCGAGGACTCTAA+AGG | - | chr1_4:15781353-15781372 | Msa0152820:exon | 50.0% | |
| CGAGCTTCGAGGACTCTAAA+GGG | - | chr1_4:15781354-15781373 | Msa0152820:exon | 50.0% | |
| ! | CGAGGACTCTAAAGGGATGT+AGG | - | chr1_4:15781361-15781380 | Msa0152820:exon | 50.0% |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr1_4:15778946-15778965 | Msa0152820:CDS | 55.0% | |
| TGGATCACCCAAGAAGCGGT+GGG | + | chr1_4:15779431-15779450 | None:intergenic | 55.0% | |
| ATGGATCACCCAAGAAGCGG+TGG | + | chr1_4:15779432-15779451 | None:intergenic | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr1_4:15779922-15779941 | None:intergenic | 55.0% |
| GGGCACGCGAGAAACTTACA+GGG | + | chr1_4:15780177-15780196 | None:intergenic | 55.0% | |
| AGGGCACGCGAGAAACTTAC+AGG | + | chr1_4:15780178-15780197 | None:intergenic | 55.0% | |
| !! | ACAGGGTTGATGGAGAAGGC+TGG | - | chr1_4:15781116-15781135 | Msa0152820:intron | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr1_4:15780282-15780301 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr1_4:15780291-15780310 | Msa0152820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15778556 | 15781464 | 15778556 | ID=Msa0152820;Name=Msa0152820 |
| chr1_4 | mRNA | 15778556 | 15781464 | 15778556 | ID=Msa0152820-mRNA-1;Parent=Msa0152820;Name=Msa0152820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|0.66|0.75|4|217|211 |
| chr1_4 | exon | 15778556 | 15779027 | 15778556 | ID=Msa0152820-mRNA-1:exon:6091;Parent=Msa0152820-mRNA-1 |
| chr1_4 | exon | 15779915 | 15780114 | 15779915 | ID=Msa0152820-mRNA-1:exon:6090;Parent=Msa0152820-mRNA-1 |
| chr1_4 | exon | 15781080 | 15781128 | 15781080 | ID=Msa0152820-mRNA-1:exon:6089;Parent=Msa0152820-mRNA-1 |
| chr1_4 | exon | 15781231 | 15781464 | 15781231 | ID=Msa0152820-mRNA-1:exon:6088;Parent=Msa0152820-mRNA-1 |
| chr1_4 | five_prime_UTR | 15781363 | 15781464 | 15781363 | ID=Msa0152820-mRNA-1:five_prime_utr;Parent=Msa0152820-mRNA-1 |
| chr1_4 | CDS | 15781231 | 15781362 | 15781231 | ID=Msa0152820-mRNA-1:cds;Parent=Msa0152820-mRNA-1 |
| chr1_4 | CDS | 15781080 | 15781128 | 15781080 | ID=Msa0152820-mRNA-1:cds;Parent=Msa0152820-mRNA-1 |
| chr1_4 | CDS | 15779915 | 15780114 | 15779915 | ID=Msa0152820-mRNA-1:cds;Parent=Msa0152820-mRNA-1 |
| chr1_4 | CDS | 15778773 | 15779027 | 15778773 | ID=Msa0152820-mRNA-1:cds;Parent=Msa0152820-mRNA-1 |
| chr1_4 | three_prime_UTR | 15778556 | 15778772 | 15778556 | ID=Msa0152820-mRNA-1:three_prime_utr;Parent=Msa0152820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
