Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061850 | XP_013466649.1 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 3.63e-132 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061850 | sp|Q67ZF6|ACFR3_ARATH | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.38e-72 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061850 | A0A072VRC8 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 1.73e-132 | 380 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012890 | Msa0061850 | 0.865721 | 4.808041e-65 | -8.615850e-47 |
| Msa0061850 | Msa0152820 | 0.916489 | 1.675084e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061850 | MtrunA17_Chr1g0161941 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 3.33e-136 | 380 |
| Msa0061850 | MtrunA17_Chr8g0375991 | 60.476 | 210 | 81 | 2 | 1 | 210 | 1 | 208 | 8.14e-89 | 260 |
| Msa0061850 | MtrunA17_Chr1g0161921 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 4.82e-56 | 177 |
| Msa0061850 | MtrunA17_Chr1g0203371 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 4.08e-55 | 175 |
| Msa0061850 | MtrunA17_Chr6g0456901 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 4.98e-42 | 142 |
| Msa0061850 | MtrunA17_Chr5g0422371 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 1.01e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061850 | AT1G14730.1 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.44e-73 | 221 |
| Msa0061850 | AT4G25570.1 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.44e-53 | 171 |
| Msa0061850 | AT4G25570.2 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.65e-52 | 169 |
| Msa0061850 | AT5G38630.1 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 5.88e-45 | 149 |
| Msa0061850 | AT1G26100.1 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 1.22e-24 | 97.4 |
Find 58 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.140094 | 1_2:-20560676 | Msa0061850:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 1_2:-20560868 | Msa0061850:intron |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 1_2:-20560717 | Msa0061850:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.288180 | 1_2:-20559662 | Msa0061850:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 1_2:-20559569 | Msa0061850:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 1_2:+20561845 | None:intergenic |
| CCTTCATACTCATACTTGTT+TGG | 0.309677 | 1_2:-20562056 | Msa0061850:CDS |
| AGGCTTAGGAACATCATTAA+AGG | 0.317240 | 1_2:+20561865 | None:intergenic |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 1_2:-20560684 | Msa0061850:CDS |
| TCAGGTTTGGCTCATTTGTT+TGG | 0.341278 | 1_2:-20562087 | Msa0061850:CDS |
| GAGGATGGTGATGAAAATAA+AGG | 0.360242 | 1_2:+20562162 | None:intergenic |
| GTAAACAAATCAATTGTATA+AGG | 0.363639 | 1_2:+20559486 | None:intergenic |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 1_2:+20560841 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 1_2:-20559603 | Msa0061850:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 1_2:-20559590 | Msa0061850:CDS |
| AGGATGGTGATGAAAATAAA+GGG | 0.411631 | 1_2:+20562163 | None:intergenic |
| CTTGTTGCATCTTGTGCTCC+AGG | 0.414540 | 1_2:+20559737 | None:intergenic |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 1_2:-20560817 | Msa0061850:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 1_2:-20560708 | Msa0061850:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 1_2:-20562100 | Msa0061850:CDS |
| TGCTGCATTAACAGGGTTGA+TGG | 0.454100 | 1_2:-20559654 | Msa0061850:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 1_2:-20560833 | Msa0061850:CDS |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 1_2:-20562012 | Msa0061850:CDS |
| TTGGTTACATTCTTGGTACC+TGG | 0.470071 | 1_2:-20559755 | Msa0061850:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 1_2:+20560736 | None:intergenic |
| CGAGCTTCGAGGACTCTAAA+GGG | 0.477005 | 1_2:-20559406 | Msa0061850:three_prime_UTR |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 1_2:-20562105 | Msa0061850:CDS |
| GGCTTAGGAACATCATTAAA+GGG | 0.482631 | 1_2:+20561866 | None:intergenic |
| CAGCAAGGAAAATAAGGCTT+AGG | 0.494373 | 1_2:+20561851 | None:intergenic |
| TTGAGATCAGACGAGCTTCG+AGG | 0.503364 | 1_2:-20559417 | Msa0061850:three_prime_UTR |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 1_2:-20560713 | Msa0061850:CDS |
| CGAGGACTCTAAAGGGATGT+AGG | 0.510837 | 1_2:-20559399 | Msa0061850:three_prime_UTR |
| TTGTTGTTGTAATAGATATG+AGG | 0.511698 | 1_2:+20562143 | None:intergenic |
| ACGAGCTTCGAGGACTCTAA+AGG | 0.513947 | 1_2:-20559407 | Msa0061850:three_prime_UTR |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 1_2:-20559718 | Msa0061850:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 1_2:-20560856 | Msa0061850:CDS |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 1_2:+20560830 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 1_2:-20559627 | Msa0061850:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.550105 | 1_2:+20562056 | None:intergenic |
| ACAGGGTTGATGGAGAAGGC+TGG | 0.560279 | 1_2:-20559644 | Msa0061850:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 1_2:-20559707 | Msa0061850:CDS |
| GTTTCTGTGCCGTCATTGAT+CGG | 0.568465 | 1_2:-20559451 | Msa0061850:three_prime_UTR |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 1_2:+20559701 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 1_2:+20560831 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 1_2:-20559704 | Msa0061850:CDS |
| AAACGATCACCGATCAATGA+CGG | 0.579387 | 1_2:+20559442 | None:intergenic |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 1_2:+20559577 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 1_2:+20561836 | None:intergenic |
| ATTAACAGGGTTGATGGAGA+AGG | 0.597536 | 1_2:-20559648 | Msa0061850:CDS |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 1_2:-20559628 | Msa0061850:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 1_2:-20562016 | Msa0061850:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 1_2:+20560677 | None:intergenic |
| GGATGGTGATGAAAATAAAG+GGG | 0.648061 | 1_2:+20562164 | None:intergenic |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 1_2:+20560717 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.660651 | 1_2:+20562098 | None:intergenic |
| TGTTGTAATAGATATGAGGA+TGG | 0.661661 | 1_2:+20562147 | None:intergenic |
| CAATATGTGCTGCATTAACA+GGG | 0.682347 | 1_2:-20559661 | Msa0061850:CDS |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 1_2:+20561999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATCAATTTAATTAA+GGG | + | chr1_2:20559948-20559967 | None:intergenic | 10.0% |
| !! | TTAGAAAATCAATTTAATTA+AGG | + | chr1_2:20559949-20559968 | None:intergenic | 10.0% |
| !! | AATATATCTCAATTTATTCA+TGG | - | chr1_2:20560623-20560642 | Msa0061850:intron | 15.0% |
| !! | ATATATCTCAATTTATTCAT+GGG | - | chr1_2:20560624-20560643 | Msa0061850:intron | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr1_2:20560657-20560676 | Msa0061850:intron | 15.0% |
| !!! | TCATATATAAATGCTTTTTT+AGG | - | chr1_2:20560887-20560906 | Msa0061850:intron | 15.0% |
| !!! | TTTTTTAGGTAAAAATAGTT+TGG | - | chr1_2:20560901-20560920 | Msa0061850:intron | 15.0% |
| !!! | CGAATTTTAGAATTTAAATT+GGG | + | chr1_2:20560962-20560981 | None:intergenic | 15.0% |
| !!! | TCGAATTTTAGAATTTAAAT+TGG | + | chr1_2:20560963-20560982 | None:intergenic | 15.0% |
| !!! | AAAAACAATCAAATAGTTTT+AGG | - | chr1_2:20561085-20561104 | Msa0061850:intron | 15.0% |
| !! | TAAAAAAACTATCATTATCT+TGG | - | chr1_2:20561546-20561565 | Msa0061850:intron | 15.0% |
| !!! | GATATATTGACTTTAATAAT+AGG | - | chr1_2:20561706-20561725 | Msa0061850:intron | 15.0% |
| !!! | TTTAATGTTTTATTGTTTGC+AGG | - | chr1_2:20559632-20559651 | Msa0061850:CDS | 20.0% |
| !!! | TGTTTTCTAGAAAGAAAAAA+GGG | + | chr1_2:20559897-20559916 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTAGAAAGAAAAA+AGG | + | chr1_2:20559898-20559917 | None:intergenic | 20.0% |
| !! | TTTGTTCAATAAAAGATTGA+GGG | + | chr1_2:20560158-20560177 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATAAAAGATTG+AGG | + | chr1_2:20560159-20560178 | None:intergenic | 20.0% |
| !!! | TGAGTTTTATACTTTAGAAA+TGG | + | chr1_2:20560213-20560232 | None:intergenic | 20.0% |
| !! | ATTCCATCGAATAAAATAAT+AGG | - | chr1_2:20560238-20560257 | Msa0061850:intron | 20.0% |
| !!! | GAAGTGTCTTTTAAATTTAA+AGG | + | chr1_2:20560298-20560317 | None:intergenic | 20.0% |
| !!! | TAACTTTTACTAAAATCGTA+AGG | + | chr1_2:20560502-20560521 | None:intergenic | 20.0% |
| !! | TAAGTGTATGTTTAGATTAA+CGG | + | chr1_2:20560576-20560595 | None:intergenic | 20.0% |
| !!! | ATATTTCAATGTGTTTTTTG+AGG | - | chr1_2:20560984-20561003 | Msa0061850:intron | 20.0% |
| !!! | AAATAGTTTTAGGATATGTT+CGG | - | chr1_2:20561095-20561114 | Msa0061850:intron | 20.0% |
| !!! | ATATAAGCTTTTGAATAAGA+CGG | - | chr1_2:20561346-20561365 | Msa0061850:intron | 20.0% |
| !! | TAATATCTTGATTGTTATCT+TGG | - | chr1_2:20561377-20561396 | Msa0061850:intron | 20.0% |
| !! | AATATCTTGATTGTTATCTT+GGG | - | chr1_2:20561378-20561397 | Msa0061850:intron | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr1_2:20561841-20561860 | Msa0061850:intron | 20.0% |
| !! | GTAAACAAATCAATTGTATA+AGG | + | chr1_2:20562042-20562061 | None:intergenic | 20.0% |
| !! | TTGTTGTTGTAATAGATATG+AGG | + | chr1_2:20559385-20559404 | None:intergenic | 25.0% |
| !!! | CTCTTTGAAACATACTTTAA+TGG | + | chr1_2:20559783-20559802 | None:intergenic | 25.0% |
| !!! | TTTTCTAGAAAGAAAAAAGG+GGG | + | chr1_2:20559895-20559914 | None:intergenic | 25.0% |
| !!! | GTTTTCTAGAAAGAAAAAAG+GGG | + | chr1_2:20559896-20559915 | None:intergenic | 25.0% |
| ! | ATAAGATTTCATTTGCATAG+AGG | + | chr1_2:20560062-20560081 | None:intergenic | 25.0% |
| !!! | ACACCTATTATTTTATTCGA+TGG | + | chr1_2:20560244-20560263 | None:intergenic | 25.0% |
| !!! | AAAGAAAGTGTTAAAAAGAG+TGG | - | chr1_2:20560265-20560284 | Msa0061850:intron | 25.0% |
| !!! | TGTGTTTTTTGAGGTTTTAT+AGG | - | chr1_2:20560993-20561012 | Msa0061850:intron | 25.0% |
| !!! | GTGTTTTTTGAGGTTTTATA+GGG | - | chr1_2:20560994-20561013 | Msa0061850:intron | 25.0% |
| !! | GTCTTATTCAAAAGCTTATA+TGG | + | chr1_2:20561347-20561366 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTATGTTG+AGG | + | chr1_2:20561489-20561508 | None:intergenic | 25.0% |
| !! | TTGTGTTATTGTTTGCAAAA+TGG | + | chr1_2:20561613-20561632 | None:intergenic | 25.0% |
| !!! | AGTCTAAAGTGTTTTTGAAT+TGG | + | chr1_2:20561666-20561685 | None:intergenic | 25.0% |
| !! | ATATTGTTGATTAATTGCAG+TGG | - | chr1_2:20561738-20561757 | Msa0061850:intron | 25.0% |
| !! | TATTGTTGATTAATTGCAGT+GGG | - | chr1_2:20561739-20561758 | Msa0061850:intron | 25.0% |
| !! | TTCAAAGTGTTTCGAAAAAA+TGG | + | chr1_2:20562164-20562183 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGAAACACTTTGA+AGG | - | chr1_2:20562163-20562182 | Msa0061850:five_prime_UTR | 25.0% |
| ATAAAGGGGTAAAAATAGAG+AGG | + | chr1_2:20559350-20559369 | None:intergenic | 30.0% | |
| ! | AGGATGGTGATGAAAATAAA+GGG | + | chr1_2:20559365-20559384 | None:intergenic | 30.0% |
| TGTTGTAATAGATATGAGGA+TGG | + | chr1_2:20559381-20559400 | None:intergenic | 30.0% | |
| ! | TTTCTAGAAAGAAAAAAGGG+GGG | + | chr1_2:20559894-20559913 | None:intergenic | 30.0% |
| CACTTCATATAAACATACAC+CGG | + | chr1_2:20560116-20560135 | None:intergenic | 30.0% | |
| TGTATATATCTCTCTTCACA+TGG | + | chr1_2:20560320-20560339 | None:intergenic | 30.0% | |
| ATTTATCTCTCTCCAAATGA+AGG | - | chr1_2:20560386-20560405 | Msa0061850:intron | 30.0% | |
| !!! | TGTCATGGACACATTTTTTA+TGG | + | chr1_2:20560433-20560452 | None:intergenic | 30.0% |
| TCTAAACACTAGAAATGTCA+TGG | + | chr1_2:20560448-20560467 | None:intergenic | 30.0% | |
| TCTCAATTTATTCATGGGTT+TGG | - | chr1_2:20560629-20560648 | Msa0061850:intron | 30.0% | |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr1_2:20560736-20560755 | Msa0061850:CDS | 30.0% |
| !! | TTCTAAAATCCAAACTGCAT+AGG | - | chr1_2:20561034-20561053 | Msa0061850:intron | 30.0% |
| ! | TCTAAAATCCAAACTGCATA+GGG | - | chr1_2:20561035-20561054 | Msa0061850:intron | 30.0% |
| !! | ACAGAAAATTGAAGGTGTTT+AGG | - | chr1_2:20561124-20561143 | Msa0061850:intron | 30.0% |
| AGCTTATATGGAAAACTACA+TGG | + | chr1_2:20561335-20561354 | None:intergenic | 30.0% | |
| ! | TTGATTGTTATCTTGGGTTT+TGG | - | chr1_2:20561384-20561403 | Msa0061850:intron | 30.0% |
| AAAAAAGAAACAGCGATTTG+GGG | + | chr1_2:20561417-20561436 | None:intergenic | 30.0% | |
| GAAAAAAGAAACAGCGATTT+GGG | + | chr1_2:20561418-20561437 | None:intergenic | 30.0% | |
| AGAAAAAAGAAACAGCGATT+TGG | + | chr1_2:20561419-20561438 | None:intergenic | 30.0% | |
| ACATCAGACAGAAACTAATT+TGG | - | chr1_2:20561922-20561941 | Msa0061850:intron | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr1_2:20561956-20561975 | Msa0061850:intron | 30.0% | |
| ! | GGATGGTGATGAAAATAAAG+GGG | + | chr1_2:20559364-20559383 | None:intergenic | 35.0% |
| ! | GAGGATGGTGATGAAAATAA+AGG | + | chr1_2:20559366-20559385 | None:intergenic | 35.0% |
| CCAAACAAGTATGAGTATGA+AGG | + | chr1_2:20559472-20559491 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr1_2:20559469-20559488 | Msa0061850:three_prime_UTR | 35.0% | |
| GGCTTAGGAACATCATTAAA+GGG | + | chr1_2:20559662-20559681 | None:intergenic | 35.0% | |
| AGGCTTAGGAACATCATTAA+AGG | + | chr1_2:20559663-20559682 | None:intergenic | 35.0% | |
| TATGGTCGAAATCATCTCAA+TGG | + | chr1_2:20560415-20560434 | None:intergenic | 35.0% | |
| TAGATTAACGGTGACTTTGA+AGG | + | chr1_2:20560564-20560583 | None:intergenic | 35.0% | |
| AAACATACACTTAGTAGTCG+TGG | - | chr1_2:20560583-20560602 | Msa0061850:intron | 35.0% | |
| AGCTATTATGGCATTCCAAA+CGG | - | chr1_2:20560669-20560688 | Msa0061850:intron | 35.0% | |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr1_2:20560708-20560727 | Msa0061850:CDS | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr1_2:20560745-20560764 | Msa0061850:CDS | 35.0% |
| GCGGAATATTTAGCATATCA+TGG | + | chr1_2:20560792-20560811 | None:intergenic | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr1_2:20560812-20560831 | Msa0061850:CDS | 35.0% | |
| ! | TATAGGGTTTTCATGCAGTT+CGG | - | chr1_2:20561010-20561029 | Msa0061850:intron | 35.0% |
| GGTTGTGTACAGAAAATTGA+AGG | - | chr1_2:20561116-20561135 | Msa0061850:intron | 35.0% | |
| ! | CACTCTTTTACTCATCATCT+TGG | - | chr1_2:20561303-20561322 | Msa0061850:intron | 35.0% |
| AGGGTTATGCAAATGATATG+TGG | - | chr1_2:20561453-20561472 | Msa0061850:intron | 35.0% | |
| GTTATGCAAATGATATGTGG+TGG | - | chr1_2:20561456-20561475 | Msa0061850:intron | 35.0% | |
| AAATGATATGTGGTGGTTTG+AGG | - | chr1_2:20561463-20561482 | Msa0061850:intron | 35.0% | |
| AATATATCATGCATGAACGC+TGG | + | chr1_2:20561694-20561713 | None:intergenic | 35.0% | |
| !! | GATTAATTGCAGTGGGTTTT+TGG | - | chr1_2:20561746-20561765 | Msa0061850:intron | 35.0% |
| !!! | TTTTGGCTTGGTTACATTCT+TGG | - | chr1_2:20561763-20561782 | Msa0061850:intron | 35.0% |
| CAATATGTGCTGCATTAACA+GGG | - | chr1_2:20561864-20561883 | Msa0061850:CDS | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr1_2:20561951-20561970 | None:intergenic | 35.0% | |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr1_2:20559420-20559439 | Msa0061850:three_prime_UTR | 40.0% |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr1_2:20559425-20559444 | Msa0061850:three_prime_UTR | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr1_2:20559430-20559449 | None:intergenic | 40.0% | |
| ! | TCAGGTTTGGCTCATTTGTT+TGG | - | chr1_2:20559438-20559457 | Msa0061850:three_prime_UTR | 40.0% |
| ! | TGGTTGTTACATTTTCGCGA+AGG | - | chr1_2:20559489-20559508 | Msa0061850:three_prime_UTR | 40.0% |
| ! | GGTTGTTACATTTTCGCGAA+GGG | - | chr1_2:20559490-20559509 | Msa0061850:three_prime_UTR | 40.0% |
| CAGCAAGGAAAATAAGGCTT+AGG | + | chr1_2:20559677-20559696 | None:intergenic | 40.0% | |
| !!! | CTAAGCCTTATTTTCCTTGC+TGG | - | chr1_2:20559675-20559694 | Msa0061850:CDS | 40.0% |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr1_2:20559683-20559702 | None:intergenic | 40.0% | |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr1_2:20559681-20559700 | Msa0061850:CDS | 40.0% |
| TAGTAAGATATGACTCCGAG+AGG | + | chr1_2:20559726-20559745 | None:intergenic | 40.0% | |
| TTTGTCCCATGTGAACTAAC+CGG | - | chr1_2:20560094-20560113 | Msa0061850:intron | 40.0% | |
| ! | ATACACCGGTTAGTTCACAT+GGG | + | chr1_2:20560102-20560121 | None:intergenic | 40.0% |
| TCTCAATGGACACCTTCATT+TGG | + | chr1_2:20560401-20560420 | None:intergenic | 40.0% | |
| ! | CGGTGACTTTGAAGGAAATA+GGG | + | chr1_2:20560556-20560575 | None:intergenic | 40.0% |
| ! | ACGGTGACTTTGAAGGAAAT+AGG | + | chr1_2:20560557-20560576 | None:intergenic | 40.0% |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr1_2:20560697-20560716 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr1_2:20560698-20560717 | None:intergenic | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr1_2:20560811-20560830 | None:intergenic | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr1_2:20560817-20560836 | Msa0061850:CDS | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr1_2:20560841-20560860 | Msa0061850:CDS | 40.0% | |
| TTGGTTACATTCTTGGTACC+TGG | - | chr1_2:20561770-20561789 | Msa0061850:intron | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr1_2:20561863-20561882 | Msa0061850:CDS | 40.0% | |
| !! | ATTAACAGGGTTGATGGAGA+AGG | - | chr1_2:20561877-20561896 | Msa0061850:intron | 40.0% |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr1_2:20561935-20561954 | Msa0061850:intron | 40.0% | |
| AAACGATCACCGATCAATGA+CGG | + | chr1_2:20562086-20562105 | None:intergenic | 40.0% | |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr1_2:20559513-20559532 | Msa0061850:three_prime_UTR | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr1_2:20559692-20559711 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr1_2:20559723-20559742 | None:intergenic | 45.0% | |
| ! | CATACACCGGTTAGTTCACA+TGG | + | chr1_2:20560103-20560122 | None:intergenic | 45.0% |
| ATATAAGTCCCACCGCTTCT+TGG | - | chr1_2:20560182-20560201 | Msa0061850:intron | 45.0% | |
| TATAAGTCCCACCGCTTCTT+GGG | - | chr1_2:20560183-20560202 | Msa0061850:intron | 45.0% | |
| GAAATGGATCACCCAAGAAG+CGG | + | chr1_2:20560197-20560216 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr1_2:20560692-20560711 | Msa0061850:CDS | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr1_2:20560808-20560827 | Msa0061850:CDS | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr1_2:20560851-20560870 | None:intergenic | 45.0% | |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr1_2:20560849-20560868 | Msa0061850:CDS | 45.0% |
| !!! | ATTGCAGTGGGTTTTTGGCT+TGG | - | chr1_2:20561751-20561770 | Msa0061850:intron | 45.0% |
| TTACCACCAACTTTGTGCCA+TGG | + | chr1_2:20561827-20561846 | None:intergenic | 45.0% | |
| TGCTGCATTAACAGGGTTGA+TGG | - | chr1_2:20561871-20561890 | Msa0061850:CDS | 45.0% | |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr1_2:20561897-20561916 | Msa0061850:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr1_2:20561898-20561917 | Msa0061850:intron | 45.0% |
| GTTTCTGTGCCGTCATTGAT+CGG | - | chr1_2:20562074-20562093 | Msa0061850:CDS | 45.0% | |
| !! | ATTAAAATAATTAATATACA+TGG | - | chr1_2:20559991-20560010 | Msa0061850:intron | 5.0% |
| !!! | TTTTCTTTATTAAATTTATT+AGG | - | chr1_2:20561433-20561452 | Msa0061850:intron | 5.0% |
| !! | TTTCTTTATTAAATTTATTA+GGG | - | chr1_2:20561434-20561453 | Msa0061850:intron | 5.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr1_2:20559509-20559528 | Msa0061850:three_prime_UTR | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr1_2:20559529-20559548 | None:intergenic | 50.0% | |
| GGGCACGCGAGAAACTTATA+GGG | + | chr1_2:20560942-20560961 | None:intergenic | 50.0% | |
| TGGGCACGCGAGAAACTTAT+AGG | + | chr1_2:20560943-20560962 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr1_2:20561059-20561078 | Msa0061850:intron | 50.0% | |
| CTTGTTGCATCTTGTGCTCC+AGG | + | chr1_2:20561791-20561810 | None:intergenic | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr1_2:20561807-20561826 | Msa0061850:intron | 50.0% |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr1_2:20561818-20561837 | Msa0061850:intron | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr1_2:20561821-20561840 | Msa0061850:intron | 50.0% | |
| TTGAGATCAGACGAGCTTCG+AGG | - | chr1_2:20562108-20562127 | Msa0061850:CDS | 50.0% | |
| ACGAGCTTCGAGGACTCTAA+AGG | - | chr1_2:20562118-20562137 | Msa0061850:exon | 50.0% | |
| CGAGCTTCGAGGACTCTAAA+GGG | - | chr1_2:20562119-20562138 | Msa0061850:exon | 50.0% | |
| ! | CGAGGACTCTAAAGGGATGT+AGG | - | chr1_2:20562126-20562145 | Msa0061850:exon | 50.0% |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr1_2:20559708-20559727 | Msa0061850:CDS | 55.0% | |
| TGGATCACCCAAGAAGCGGT+GGG | + | chr1_2:20560193-20560212 | None:intergenic | 55.0% | |
| ATGGATCACCCAAGAAGCGG+TGG | + | chr1_2:20560194-20560213 | None:intergenic | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr1_2:20560687-20560706 | None:intergenic | 55.0% |
| !! | ACAGGGTTGATGGAGAAGGC+TGG | - | chr1_2:20561881-20561900 | Msa0061850:intron | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr1_2:20561046-20561065 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr1_2:20561055-20561074 | Msa0061850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 20559318 | 20562229 | 20559318 | ID=Msa0061850;Name=Msa0061850 |
| chr1_2 | mRNA | 20559318 | 20562229 | 20559318 | ID=Msa0061850-mRNA-1;Parent=Msa0061850;Name=Msa0061850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|0.66|0.75|4|217|211 |
| chr1_2 | exon | 20559318 | 20559789 | 20559318 | ID=Msa0061850-mRNA-1:exon:7750;Parent=Msa0061850-mRNA-1 |
| chr1_2 | exon | 20560677 | 20560876 | 20560677 | ID=Msa0061850-mRNA-1:exon:7749;Parent=Msa0061850-mRNA-1 |
| chr1_2 | exon | 20561845 | 20561893 | 20561845 | ID=Msa0061850-mRNA-1:exon:7748;Parent=Msa0061850-mRNA-1 |
| chr1_2 | exon | 20561996 | 20562229 | 20561996 | ID=Msa0061850-mRNA-1:exon:7747;Parent=Msa0061850-mRNA-1 |
| chr1_2 | five_prime_UTR | 20562128 | 20562229 | 20562128 | ID=Msa0061850-mRNA-1:five_prime_utr;Parent=Msa0061850-mRNA-1 |
| chr1_2 | CDS | 20561996 | 20562127 | 20561996 | ID=Msa0061850-mRNA-1:cds;Parent=Msa0061850-mRNA-1 |
| chr1_2 | CDS | 20561845 | 20561893 | 20561845 | ID=Msa0061850-mRNA-1:cds;Parent=Msa0061850-mRNA-1 |
| chr1_2 | CDS | 20560677 | 20560876 | 20560677 | ID=Msa0061850-mRNA-1:cds;Parent=Msa0061850-mRNA-1 |
| chr1_2 | CDS | 20559535 | 20559789 | 20559535 | ID=Msa0061850-mRNA-1:cds;Parent=Msa0061850-mRNA-1 |
| chr1_2 | three_prime_UTR | 20559318 | 20559534 | 20559318 | ID=Msa0061850-mRNA-1:three_prime_utr;Parent=Msa0061850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
