Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013860 | sp|Q9LIH7|ZDHC7_ARATH | 56.627 | 332 | 139 | 2 | 17 | 343 | 14 | 345 | 8.55e-141 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013860 | Msa0062900 | 0.838955 | 2.113890e-57 | -8.615850e-47 |
| Msa0013860 | Msa0153770 | 0.906316 | 1.690061e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013860 | MtrunA17_Chr1g0163561 | 97.959 | 343 | 7 | 0 | 1 | 343 | 1 | 343 | 0.0 | 697 |
| Msa0013860 | MtrunA17_Chr4g0037991 | 65.868 | 334 | 113 | 1 | 10 | 343 | 29 | 361 | 1.98e-173 | 486 |
| Msa0013860 | MtrunA17_Chr4g0009911 | 35.938 | 128 | 60 | 3 | 102 | 215 | 51 | 170 | 1.25e-16 | 79.3 |
| Msa0013860 | MtrunA17_Chr1g0199411 | 34.694 | 147 | 86 | 4 | 75 | 215 | 17 | 159 | 1.19e-15 | 76.3 |
| Msa0013860 | MtrunA17_Chr4g0011001 | 32.121 | 165 | 85 | 5 | 56 | 193 | 3 | 167 | 3.33e-13 | 69.3 |
| Msa0013860 | MtrunA17_Chr5g0406311 | 41.270 | 63 | 37 | 0 | 153 | 215 | 170 | 232 | 3.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013860 | AT3G18620.1 | 56.627 | 332 | 139 | 2 | 17 | 343 | 14 | 345 | 8.69e-142 | 405 |
| Msa0013860 | AT3G09320.1 | 29.583 | 240 | 122 | 7 | 72 | 299 | 12 | 216 | 3.64e-15 | 75.1 |
| Msa0013860 | AT4G22750.1 | 36.207 | 116 | 71 | 1 | 97 | 212 | 65 | 177 | 3.19e-13 | 69.7 |
| Msa0013860 | AT5G05070.1 | 28.931 | 159 | 82 | 5 | 152 | 310 | 172 | 299 | 1.87e-12 | 68.2 |
| Msa0013860 | AT5G04270.1 | 44.444 | 63 | 35 | 0 | 153 | 215 | 94 | 156 | 7.48e-12 | 65.5 |
| Msa0013860 | AT3G56920.1 | 44.444 | 63 | 35 | 0 | 152 | 214 | 143 | 205 | 1.02e-11 | 65.5 |
| Msa0013860 | AT4G00840.2 | 47.170 | 53 | 28 | 0 | 141 | 193 | 101 | 153 | 3.36e-11 | 62.8 |
| Msa0013860 | AT2G40990.1 | 39.683 | 63 | 38 | 0 | 152 | 214 | 161 | 223 | 6.44e-11 | 63.5 |
| Msa0013860 | AT4G00840.1 | 47.170 | 53 | 28 | 0 | 141 | 193 | 101 | 153 | 8.62e-11 | 62.4 |
Find 69 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTCCCTCGGACGCTTAA+AGG | 0.183327 | 1_1:-21608013 | Msa0013860:CDS |
| TAGCTTCCCCATAATATATT+TGG | 0.224116 | 1_1:+21609198 | None:intergenic |
| GAACACCACCAAATATATTA+TGG | 0.225012 | 1_1:-21609206 | Msa0013860:CDS |
| TATATGCTAGCATGCATATT+TGG | 0.260054 | 1_1:-21608047 | Msa0013860:CDS |
| AGAACGCGTGTGTGTTTACC+TGG | 0.334550 | 1_1:+21613552 | None:intergenic |
| CTTCGTTTGCTTCCTCATTT+CGG | 0.338629 | 1_1:-21608106 | Msa0013860:CDS |
| ACACCAACCACATTTGAATA+TGG | 0.339245 | 1_1:+21611168 | None:intergenic |
| AACACCACCAAATATATTAT+GGG | 0.394441 | 1_1:-21609205 | Msa0013860:CDS |
| GAAATTGAGAGTGTCGATTT+CGG | 0.409805 | 1_1:+21613510 | None:intergenic |
| AGACTGACAGAGAAGACTAT+AGG | 0.425751 | 1_1:+21609318 | None:intergenic |
| AACGCGAGCAAAAGTGCTTC+GGG | 0.427528 | 1_1:-21611117 | Msa0013860:CDS |
| GACTGACAGAGAAGACTATA+GGG | 0.431769 | 1_1:+21609319 | None:intergenic |
| AATCACATATAGGAGCAATA+TGG | 0.432779 | 1_1:-21611265 | Msa0013860:intron |
| GCGAGTGTTTCATTGCAGAT+AGG | 0.447344 | 1_1:-21607877 | Msa0013860:CDS |
| AAACGCGAGCAAAAGTGCTT+CGG | 0.450582 | 1_1:-21611118 | Msa0013860:CDS |
| GAGACAACCTGCTGGGGTTG+TGG | 0.454554 | 1_1:-21611220 | Msa0013860:CDS |
| TACTCCCTCGGACGCTTAAA+GGG | 0.462436 | 1_1:-21608012 | Msa0013860:CDS |
| CGGAAAATGTATACTGGACA+TGG | 0.471242 | 1_1:-21609082 | Msa0013860:CDS |
| CTTGCAGCATTTAGGTGTGC+TGG | 0.481835 | 1_1:-21609228 | Msa0013860:CDS |
| TTCATGCGGAAAATGTATAC+TGG | 0.483089 | 1_1:-21609088 | Msa0013860:CDS |
| TGATGTGCTCTAGGTGACTT+TGG | 0.487243 | 1_1:+21609117 | None:intergenic |
| GCTTAAAGGGTATGACTGGC+CGG | 0.495021 | 1_1:-21607999 | Msa0013860:CDS |
| CTTCCCCATAATATATTTGG+TGG | 0.506867 | 1_1:+21609201 | None:intergenic |
| GAGGTCACCTTGCCCTACCG+TGG | 0.513800 | 1_1:+21609173 | None:intergenic |
| AGGAGAAGAAGAAGAAGCCA+TGG | 0.531669 | 1_1:+21613488 | None:intergenic |
| GGACGCTTAAAGGGTATGAC+TGG | 0.532460 | 1_1:-21608003 | Msa0013860:CDS |
| AGCTACCCCACGGTAGGGCA+AGG | 0.533042 | 1_1:-21609180 | Msa0013860:CDS |
| ATACATAAGATGAATCTGTC+AGG | 0.534757 | 1_1:-21607666 | Msa0013860:exon |
| AGGTCACCTTGCCCTACCGT+GGG | 0.535258 | 1_1:+21609174 | None:intergenic |
| ATCGACACTCTCAATTTCCA+TGG | 0.535306 | 1_1:-21613505 | Msa0013860:exon |
| TGCTCAGCACTGCCGAAATG+AGG | 0.539557 | 1_1:+21608094 | None:intergenic |
| TGGCAGATTGGCAACTGTGT+GGG | 0.550063 | 1_1:-21608147 | Msa0013860:intron |
| TAATTATGAGACAACCTGCT+GGG | 0.551035 | 1_1:-21611227 | Msa0013860:CDS |
| TTCTTCTTCTTCTCCTCACG+AGG | 0.553010 | 1_1:-21613481 | Msa0013860:intron |
| ACATTTGAATATGGATGCAC+CGG | 0.555614 | 1_1:+21611177 | None:intergenic |
| GCGAAGTCCACAACCCCAGC+AGG | 0.560586 | 1_1:+21611213 | None:intergenic |
| CTTAAAGGGTATGACTGGCC+GGG | 0.561212 | 1_1:-21607998 | Msa0013860:CDS |
| ATAATTATGAGACAACCTGC+TGG | 0.564546 | 1_1:-21611228 | Msa0013860:CDS |
| CTTCGCGTTATGCTTCCATC+CGG | 0.565639 | 1_1:-21611196 | Msa0013860:CDS |
| TTGAATATGGATGCACCGGA+TGG | 0.567232 | 1_1:+21611181 | None:intergenic |
| CCACCATTGTCATACTCCCT+CGG | 0.568831 | 1_1:-21608024 | Msa0013860:CDS |
| TAAGTCTCCATGCTAGATCC+CGG | 0.577695 | 1_1:+21607980 | None:intergenic |
| GAACGACAATGATGTGCTCT+AGG | 0.583530 | 1_1:+21609108 | None:intergenic |
| TGACTGGCCGGGATCTAGCA+TGG | 0.593847 | 1_1:-21607987 | Msa0013860:CDS |
| TCATACCCTTTAAGCGTCCG+AGG | 0.598416 | 1_1:+21608007 | None:intergenic |
| TGGGGAAGCTACCCCACGGT+AGG | 0.603154 | 1_1:-21609186 | Msa0013860:CDS |
| TTGGCAGATTGGCAACTGTG+TGG | 0.604212 | 1_1:-21608148 | Msa0013860:intron |
| GAACGCGTGTGTGTTTACCT+GGG | 0.616329 | 1_1:+21613553 | None:intergenic |
| TAGGAGCAATATGGAACTGA+GGG | 0.616913 | 1_1:-21611256 | Msa0013860:CDS |
| CATCCATATTCAAATGTGGT+TGG | 0.621569 | 1_1:-21611171 | Msa0013860:CDS |
| ACGCTGTTTCTATCGTCTAG+AGG | 0.621959 | 1_1:-21607925 | Msa0013860:CDS |
| GGGGAAGCTACCCCACGGTA+GGG | 0.622081 | 1_1:-21609185 | Msa0013860:CDS |
| GCACATCATTGTCGTTCATG+CGG | 0.626648 | 1_1:-21609102 | Msa0013860:CDS |
| ACACCACCAAATATATTATG+GGG | 0.627205 | 1_1:-21609204 | Msa0013860:CDS |
| AAACAGCGTAGATCTCAAGA+AGG | 0.634753 | 1_1:+21607939 | None:intergenic |
| ATATTCAAATGTGGTTGGTG+TGG | 0.638886 | 1_1:-21611166 | Msa0013860:CDS |
| CGTGCCTCTTCTGAGTAACA+CGG | 0.643444 | 1_1:+21607689 | None:intergenic |
| CAGCACACCTAAATGCTGCA+AGG | 0.644057 | 1_1:+21609229 | None:intergenic |
| ATAGGAGCAATATGGAACTG+AGG | 0.650745 | 1_1:-21611257 | Msa0013860:intron |
| ACTTCCGTGTTACTCAGAAG+AGG | 0.655103 | 1_1:-21607693 | Msa0013860:CDS |
| CCGAGGGAGTATGACAATGG+TGG | 0.659728 | 1_1:+21608024 | None:intergenic |
| CATACCCTTTAAGCGTCCGA+GGG | 0.660431 | 1_1:+21608008 | None:intergenic |
| CGTCCGAGGGAGTATGACAA+TGG | 0.661120 | 1_1:+21608021 | None:intergenic |
| GGTGCATCCATATTCAAATG+TGG | 0.668516 | 1_1:-21611175 | Msa0013860:CDS |
| GCGAGCAAAAGTGCTTCGGG+TGG | 0.680413 | 1_1:-21611114 | Msa0013860:CDS |
| AATTATGAGACAACCTGCTG+GGG | 0.682923 | 1_1:-21611226 | Msa0013860:CDS |
| TAGATGGAACAAACCTCGTG+AGG | 0.699163 | 1_1:+21613468 | None:intergenic |
| GGTCACCTTGCCCTACCGTG+GGG | 0.699639 | 1_1:+21609175 | None:intergenic |
| ATTATGGGGAAGCTACCCCA+CGG | 0.740734 | 1_1:-21609190 | Msa0013860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTATATTTGTTATATTAT+CGG | + | chr1_1:21609034-21609053 | None:intergenic | 10.0% |
| !!! | TACATAATATTTTAAATCAA+AGG | + | chr1_1:21609520-21609539 | None:intergenic | 10.0% |
| !! | AATTTATACAAAATTCAAAT+TGG | - | chr1_1:21610178-21610197 | Msa0013860:intron | 10.0% |
| !! | ATTTATACAAAATTCAAATT+GGG | - | chr1_1:21610179-21610198 | Msa0013860:intron | 10.0% |
| !!! | AGTTTTATTATTGAAAAATA+AGG | + | chr1_1:21612133-21612152 | None:intergenic | 10.0% |
| !! | GTTTGAATAAAATATTATAA+TGG | - | chr1_1:21612792-21612811 | Msa0013860:intron | 10.0% |
| !! | TACATATGAATTTATCAATT+TGG | + | chr1_1:21608213-21608232 | None:intergenic | 15.0% |
| !! | TTTATAAAATAAGTCTAAAG+CGG | - | chr1_1:21608273-21608292 | Msa0013860:intron | 15.0% |
| !! | AATCTATAACAATATGTAAA+GGG | + | chr1_1:21609163-21609182 | None:intergenic | 15.0% |
| !! | TAATCTATAACAATATGTAA+AGG | + | chr1_1:21609164-21609183 | None:intergenic | 15.0% |
| !! | ATTAAATGAAATGATTGTTA+AGG | - | chr1_1:21609222-21609241 | Msa0013860:CDS | 15.0% |
| !! | TTAAATGAAATGATTGTTAA+GGG | - | chr1_1:21609223-21609242 | Msa0013860:CDS | 15.0% |
| !! | TTCACATTTATATCTAAATA+CGG | + | chr1_1:21609577-21609596 | None:intergenic | 15.0% |
| !! | AAATCCCTTAAAATAAAAAT+TGG | - | chr1_1:21610506-21610525 | Msa0013860:intron | 15.0% |
| !!! | ATTTTTATTTTTTTTGCAGT+TGG | - | chr1_1:21611723-21611742 | Msa0013860:intron | 15.0% |
| !!! | TAACATTTTTTCTTTTTTGA+GGG | + | chr1_1:21612168-21612187 | None:intergenic | 15.0% |
| !!! | TTAACATTTTTTCTTTTTTG+AGG | + | chr1_1:21612169-21612188 | None:intergenic | 15.0% |
| !!! | AAACAAGTATATATATTTTG+TGG | + | chr1_1:21613532-21613551 | None:intergenic | 15.0% |
| !! | AAAATGATGAGAAAAGAAAA+GGG | + | chr1_1:21607646-21607665 | None:intergenic | 20.0% |
| !! | AAAAATGATGAGAAAAGAAA+AGG | + | chr1_1:21607647-21607666 | None:intergenic | 20.0% |
| !!! | TTATCTATTCCTTCAATTTT+GGG | - | chr1_1:21607756-21607775 | Msa0013860:CDS | 20.0% |
| !!! | CATATTTTTTATCGTGATTA+AGG | - | chr1_1:21607887-21607906 | Msa0013860:CDS | 20.0% |
| !! | TATGAATTTATCAATTTGGT+AGG | + | chr1_1:21608209-21608228 | None:intergenic | 20.0% |
| !! | AACAAACTAAGCAAAAATTT+GGG | + | chr1_1:21608663-21608682 | None:intergenic | 20.0% |
| !! | TAACAAACTAAGCAAAAATT+TGG | + | chr1_1:21608664-21608683 | None:intergenic | 20.0% |
| !!! | GCTAAATATATTTTTAGGAT+TGG | - | chr1_1:21608785-21608804 | Msa0013860:intron | 20.0% |
| !!! | ACACGATATATCATTTTTAT+AGG | - | chr1_1:21609079-21609098 | Msa0013860:CDS | 20.0% |
| !!! | TTTATAGGCAAATTTGTTTA+AGG | - | chr1_1:21609094-21609113 | Msa0013860:CDS | 20.0% |
| !!! | TTATAGGCAAATTTGTTTAA+GGG | - | chr1_1:21609095-21609114 | Msa0013860:CDS | 20.0% |
| !! | ATCTATAACAATATGTAAAG+GGG | + | chr1_1:21609162-21609181 | None:intergenic | 20.0% |
| !! | TAAATGAAATGATTGTTAAG+GGG | - | chr1_1:21609224-21609243 | Msa0013860:CDS | 20.0% |
| !!! | AAGTAAATATCTGAAACTAT+AGG | - | chr1_1:21609595-21609614 | Msa0013860:intron | 20.0% |
| !! | CTATAGTTGTTTATTAAACT+CGG | - | chr1_1:21609634-21609653 | Msa0013860:intron | 20.0% |
| !! | TATAGTTGTTTATTAAACTC+GGG | - | chr1_1:21609635-21609654 | Msa0013860:intron | 20.0% |
| !!! | CTTTTTGTTTTGATTTGTAA+TGG | + | chr1_1:21609945-21609964 | None:intergenic | 20.0% |
| !! | ATCCTAACATATATTTGTAA+GGG | + | chr1_1:21610272-21610291 | None:intergenic | 20.0% |
| !!! | TGGTCCAATTTTTATTTTAA+GGG | + | chr1_1:21610513-21610532 | None:intergenic | 20.0% |
| !!! | TTGGTCCAATTTTTATTTTA+AGG | + | chr1_1:21610514-21610533 | None:intergenic | 20.0% |
| !! | GAATTTATCATATGACATTA+TGG | + | chr1_1:21610766-21610785 | None:intergenic | 20.0% |
| !! | TATAAGTCAAAGCAATTAAA+GGG | + | chr1_1:21610826-21610845 | None:intergenic | 20.0% |
| !! | ATATAAGTCAAAGCAATTAA+AGG | + | chr1_1:21610827-21610846 | None:intergenic | 20.0% |
| !! | TAAAATTATGGGGAAATATA+GGG | + | chr1_1:21611014-21611033 | None:intergenic | 20.0% |
| !! | ATAAAATTATGGGGAAATAT+AGG | + | chr1_1:21611015-21611034 | None:intergenic | 20.0% |
| !! | ACTCCATCATATAAAATTAT+GGG | + | chr1_1:21611025-21611044 | None:intergenic | 20.0% |
| !!! | ACAGAAAGTATAATGTTATA+AGG | + | chr1_1:21611299-21611318 | None:intergenic | 20.0% |
| !! | ATATTATCGTAGTAAGAAAA+TGG | + | chr1_1:21612052-21612071 | None:intergenic | 20.0% |
| !! | ATGATATTACAAAGAAACAA+CGG | + | chr1_1:21612088-21612107 | None:intergenic | 20.0% |
| !!! | AACATTTTTTCTTTTTTGAG+GGG | + | chr1_1:21612167-21612186 | None:intergenic | 20.0% |
| !! | AGCTATAACAAGTAATATAT+GGG | + | chr1_1:21612397-21612416 | None:intergenic | 20.0% |
| !! | AAGCTATAACAAGTAATATA+TGG | + | chr1_1:21612398-21612417 | None:intergenic | 20.0% |
| !!! | TAGAAAATCATGTCTTTTTT+AGG | + | chr1_1:21612448-21612467 | None:intergenic | 20.0% |
| !!! | AATTAGTTAGAAGTATGTTT+TGG | - | chr1_1:21612569-21612588 | Msa0013860:intron | 20.0% |
| !!! | CAAAAAATCTAACAAGATTT+TGG | + | chr1_1:21613337-21613356 | None:intergenic | 20.0% |
| !!! | CAAAATCTTGTTAGATTTTT+TGG | - | chr1_1:21613335-21613354 | Msa0013860:intron | 20.0% |
| !! | CTTATCTATTCCTTCAATTT+TGG | - | chr1_1:21607755-21607774 | Msa0013860:CDS | 25.0% |
| !!! | GTAGAGAATTTTTTGAGTAA+TGG | - | chr1_1:21607799-21607818 | Msa0013860:CDS | 25.0% |
| !!! | ATTAAGGAGATTTTAGGTTA+GGG | - | chr1_1:21607903-21607922 | Msa0013860:CDS | 25.0% |
| ! | TATGTTAGTTACATTGAGAA+CGG | + | chr1_1:21607964-21607983 | None:intergenic | 25.0% |
| !! | AATTGTTGTTGAATGACAAA+TGG | + | chr1_1:21607990-21608009 | None:intergenic | 25.0% |
| ! | TGTCATTCAACAACAATTAT+TGG | - | chr1_1:21607992-21608011 | Msa0013860:CDS | 25.0% |
| ! | GTCATTCAACAACAATTATT+GGG | - | chr1_1:21607993-21608012 | Msa0013860:CDS | 25.0% |
| !!! | TGATATTTGCTATTGTTTTG+AGG | + | chr1_1:21608330-21608349 | None:intergenic | 25.0% |
| !!! | GGGGTTTTTAAAATATTTTC+AGG | + | chr1_1:21608353-21608372 | None:intergenic | 25.0% |
| ! | ATTTATAACCACTGTTCTAT+TGG | + | chr1_1:21608550-21608569 | None:intergenic | 25.0% |
| ! | TTATAAATTAACGTGAGAGA+GGG | - | chr1_1:21608562-21608581 | Msa0013860:intron | 25.0% |
| !! | AAGGGTTTTCAATAAATCAT+TGG | - | chr1_1:21608689-21608708 | Msa0013860:intron | 25.0% |
| !!! | TTAGCCAAAACGTATTTTTA+GGG | - | chr1_1:21608753-21608772 | Msa0013860:intron | 25.0% |
| !! | AAAACCCTAAAAATACGTTT+TGG | + | chr1_1:21608760-21608779 | None:intergenic | 25.0% |
| !!! | AAAACGTATTTTTAGGGTTT+TGG | - | chr1_1:21608759-21608778 | Msa0013860:intron | 25.0% |
| !!! | AAACGTATTTTTAGGGTTTT+GGG | - | chr1_1:21608760-21608779 | Msa0013860:intron | 25.0% |
| !!! | ATTTTTAGGATTGGAATTTC+TGG | - | chr1_1:21608794-21608813 | Msa0013860:intron | 25.0% |
| !!! | TATTTGTTATATTATCGGTG+TGG | + | chr1_1:21609029-21609048 | None:intergenic | 25.0% |
| !! | AATTTGTTTAAGGGCATAAT+CGG | - | chr1_1:21609104-21609123 | Msa0013860:CDS | 25.0% |
| ! | AGAAGTTTCCTAAAACTATA+TGG | - | chr1_1:21609465-21609484 | Msa0013860:intron | 25.0% |
| ! | ATAGTTGTTTATTAAACTCG+GGG | - | chr1_1:21609636-21609655 | Msa0013860:intron | 25.0% |
| ! | AACTGTGGAAAGAAAAAAAA+GGG | + | chr1_1:21609765-21609784 | None:intergenic | 25.0% |
| ! | AAACTGTGGAAAGAAAAAAA+AGG | + | chr1_1:21609766-21609785 | None:intergenic | 25.0% |
| ! | AGGAAAATCAAATCAAATTC+TGG | + | chr1_1:21610109-21610128 | None:intergenic | 25.0% |
| !!! | AATTTGATTTGATTTTCCTC+TGG | - | chr1_1:21610110-21610129 | Msa0013860:intron | 25.0% |
| !!! | ATTTGATTTGATTTTCCTCT+GGG | - | chr1_1:21610111-21610130 | Msa0013860:intron | 25.0% |
| ! | TGTATAAATTCAACCTCAAA+TGG | + | chr1_1:21610168-21610187 | None:intergenic | 25.0% |
| ! | GTTGTTAATATGTAATGCTT+TGG | - | chr1_1:21610225-21610244 | Msa0013860:intron | 25.0% |
| ! | TTCCCTTACAAATATATGTT+AGG | - | chr1_1:21610267-21610286 | Msa0013860:intron | 25.0% |
| ! | GATCCTAACATATATTTGTA+AGG | + | chr1_1:21610273-21610292 | None:intergenic | 25.0% |
| ! | AAATATATGTTAGGATCAGA+AGG | - | chr1_1:21610276-21610295 | Msa0013860:intron | 25.0% |
| ! | TATGCTATTGCATTGTATAT+GGG | + | chr1_1:21610567-21610586 | None:intergenic | 25.0% |
| ! | TTATGCTATTGCATTGTATA+TGG | + | chr1_1:21610568-21610587 | None:intergenic | 25.0% |
| !! | CACAACAATGGTAATTTTAT+TGG | + | chr1_1:21610652-21610671 | None:intergenic | 25.0% |
| ! | CATGATAATAATCACAACAA+TGG | + | chr1_1:21610664-21610683 | None:intergenic | 25.0% |
| !! | TTCCCCATAATTTTATATGA+TGG | - | chr1_1:21611019-21611038 | Msa0013860:intron | 25.0% |
| ! | CTCCATCATATAAAATTATG+GGG | + | chr1_1:21611024-21611043 | None:intergenic | 25.0% |
| ! | CACTCCATCATATAAAATTA+TGG | + | chr1_1:21611026-21611045 | None:intergenic | 25.0% |
| !!! | CATAATTTTATATGATGGAG+TGG | - | chr1_1:21611024-21611043 | Msa0013860:intron | 25.0% |
| ! | TTGTCTAAGTAAAAGTAAGA+CGG | + | chr1_1:21611150-21611169 | None:intergenic | 25.0% |
| ! | TACTTTCTGTCAGTTAAATT+TGG | - | chr1_1:21611309-21611328 | Msa0013860:intron | 25.0% |
| !! | GATTTTACACAAATAAAGTG+TGG | - | chr1_1:21611481-21611500 | Msa0013860:intron | 25.0% |
| !! | ATGATGCAGTTTTTCATTTT+TGG | + | chr1_1:21611673-21611692 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTTGCAGTTGG+AGG | - | chr1_1:21611726-21611745 | Msa0013860:intron | 25.0% |
| !!! | TTATTTTTTTTGCAGTTGGA+GGG | - | chr1_1:21611727-21611746 | Msa0013860:intron | 25.0% |
| ! | AACACCACCAAATATATTAT+GGG | - | chr1_1:21611878-21611897 | Msa0013860:intron | 25.0% |
| ! | AGAAAATGGAAACTTACAAA+TGG | + | chr1_1:21612038-21612057 | None:intergenic | 25.0% |
| ! | GAACTTTGAATGTAATGATT+GGG | - | chr1_1:21612312-21612331 | Msa0013860:intron | 25.0% |
| !!! | AATCATGTCTTTTTTAGGAA+GGG | + | chr1_1:21612443-21612462 | None:intergenic | 25.0% |
| !!! | AAATCATGTCTTTTTTAGGA+AGG | + | chr1_1:21612444-21612463 | None:intergenic | 25.0% |
| ! | ACTAATTAAATTATCCTTCC+AGG | + | chr1_1:21612556-21612575 | None:intergenic | 25.0% |
| ! | TTTGTAATGTAATATGCTCA+TGG | - | chr1_1:21612733-21612752 | Msa0013860:intron | 25.0% |
| !!! | AAAATGGATACTTTTGTTTG+TGG | - | chr1_1:21612843-21612862 | Msa0013860:intron | 25.0% |
| !! | TCATAGCTTTTGTAATTCTT+TGG | - | chr1_1:21612916-21612935 | Msa0013860:intron | 25.0% |
| !! | AGCTCTCTTTTATATATCAA+GGG | - | chr1_1:21613252-21613271 | Msa0013860:intron | 25.0% |
| ! | TTTGAGAAAAATCTTGATAC+AGG | + | chr1_1:21613371-21613390 | None:intergenic | 25.0% |
| !! | AGTGTTTGTGTCTTTTATAT+AGG | - | chr1_1:21613478-21613497 | Msa0013860:intron | 25.0% |
| !!! | GTCTTCTCTGAATTTTTTTT+TGG | + | chr1_1:21613507-21613526 | None:intergenic | 25.0% |
| !! | CAAGTATATATATTTTGTGG+TGG | + | chr1_1:21613529-21613548 | None:intergenic | 25.0% |
| AAAGAAAAGGGATTGATAGA+TGG | + | chr1_1:21607634-21607653 | None:intergenic | 30.0% | |
| ! | TTAGGTTTTCCCAAAATTGA+AGG | + | chr1_1:21607768-21607787 | None:intergenic | 30.0% |
| !! | ATTTTGGGAAAACCTAAGTT+AGG | - | chr1_1:21607771-21607790 | Msa0013860:CDS | 30.0% |
| ! | TCTCTACATTTTCCTAACTT+AGG | + | chr1_1:21607786-21607805 | None:intergenic | 30.0% |
| CATCATGCTAATTCAATACT+TGG | - | chr1_1:21607861-21607880 | Msa0013860:CDS | 30.0% | |
| ! | ATCGTGATTAAGGAGATTTT+AGG | - | chr1_1:21607897-21607916 | Msa0013860:CDS | 30.0% |
| !!! | GATTAAGGAGATTTTAGGTT+AGG | - | chr1_1:21607902-21607921 | Msa0013860:CDS | 30.0% |
| ATGTTAGTTACATTGAGAAC+GGG | + | chr1_1:21607963-21607982 | None:intergenic | 30.0% | |
| !!! | TGTGTCTTTATTTTCTGTTC+TGG | + | chr1_1:21608386-21608405 | None:intergenic | 30.0% |
| GAAGAGTTCATAGTAGAATT+GGG | - | chr1_1:21608467-21608486 | Msa0013860:intron | 30.0% | |
| AGAAAAAACCAATAGAACAG+TGG | - | chr1_1:21608539-21608558 | Msa0013860:intron | 30.0% | |
| GTTATAAATTAACGTGAGAG+AGG | - | chr1_1:21608561-21608580 | Msa0013860:intron | 30.0% | |
| CTAAATTTACCCATAAACTG+TGG | + | chr1_1:21608636-21608655 | None:intergenic | 30.0% | |
| !! | TGCTTAGTTTGTTATTGTGA+AGG | - | chr1_1:21608670-21608689 | Msa0013860:intron | 30.0% |
| !! | GCTTAGTTTGTTATTGTGAA+GGG | - | chr1_1:21608671-21608690 | Msa0013860:intron | 30.0% |
| ! | ATGAACTGTTTCAGAGTTTT+AGG | - | chr1_1:21608728-21608747 | Msa0013860:intron | 30.0% |
| ! | GTTAGCCAAAACGTATTTTT+AGG | - | chr1_1:21608752-21608771 | Msa0013860:intron | 30.0% |
| ! | GGGAGGCTAAATATATTTTT+AGG | - | chr1_1:21608780-21608799 | Msa0013860:intron | 30.0% |
| ! | ATTGGGTTAGAATTGAATTC+TGG | + | chr1_1:21608884-21608903 | None:intergenic | 30.0% |
| TTGCAAAATCATTTGATCCT+AGG | - | chr1_1:21608929-21608948 | Msa0013860:intron | 30.0% | |
| TGTGGTTGAAAAAGATAACA+TGG | + | chr1_1:21609011-21609030 | None:intergenic | 30.0% | |
| ! | ATTATAGATGATGATGCTGA+TGG | - | chr1_1:21609180-21609199 | Msa0013860:CDS | 30.0% |
| AAGGTATAAAAGCTTACAGT+AGG | + | chr1_1:21609253-21609272 | None:intergenic | 30.0% | |
| ! | GTGAAAGACAAGTTTTTCTT+TGG | - | chr1_1:21609298-21609317 | Msa0013860:CDS | 30.0% |
| TTTCATAGCCTAAAAGACAA+TGG | - | chr1_1:21609372-21609391 | Msa0013860:intron | 30.0% | |
| AGTTGTATGGAGAAAGTAAT+TGG | + | chr1_1:21609430-21609449 | None:intergenic | 30.0% | |
| GAAGCAATATGAAAGTTGTA+TGG | + | chr1_1:21609443-21609462 | None:intergenic | 30.0% | |
| GCTAGTAGAAGAATTATAGA+AGG | + | chr1_1:21609690-21609709 | None:intergenic | 30.0% | |
| ! | GCTACATAATTTTCAAACTG+TGG | + | chr1_1:21609780-21609799 | None:intergenic | 30.0% |
| TGAAAATTATGTAGCTTCCT+TGG | - | chr1_1:21609785-21609804 | Msa0013860:intron | 30.0% | |
| TTGCTCTTGTAATCACATAT+AGG | - | chr1_1:21609808-21609827 | Msa0013860:intron | 30.0% | |
| AATCACATATAGGAGCAATA+TGG | - | chr1_1:21609818-21609837 | Msa0013860:intron | 30.0% | |
| AATCAAATTCTGGTCAACAA+GGG | + | chr1_1:21610099-21610118 | None:intergenic | 30.0% | |
| AAATCAAATTCTGGTCAACA+AGG | + | chr1_1:21610100-21610119 | None:intergenic | 30.0% | |
| AATTCAACCTCAAATGGAAA+CGG | + | chr1_1:21610162-21610181 | None:intergenic | 30.0% | |
| AAATTCAAATTGGGAGTTGA+TGG | - | chr1_1:21610188-21610207 | Msa0013860:intron | 30.0% | |
| TACCTCACAATCTCATTATT+TGG | - | chr1_1:21610870-21610889 | Msa0013860:intron | 30.0% | |
| TTATGAAACCTAAGTCAAGT+TGG | + | chr1_1:21611124-21611143 | None:intergenic | 30.0% | |
| TACACAAATAAAGTGTGGAT+TGG | - | chr1_1:21611486-21611505 | Msa0013860:intron | 30.0% | |
| !! | GCAGTTTTTCATTTTTGGAA+TGG | + | chr1_1:21611668-21611687 | None:intergenic | 30.0% |
| !!! | TATTTTTTTTGCAGTTGGAG+GGG | - | chr1_1:21611728-21611747 | Msa0013860:intron | 30.0% |
| ! | AAAAAAGGAAAGTGTAGCTA+TGG | + | chr1_1:21611832-21611851 | None:intergenic | 30.0% |
| GAACACCACCAAATATATTA+TGG | - | chr1_1:21611877-21611896 | Msa0013860:intron | 30.0% | |
| ACACCACCAAATATATTATG+GGG | - | chr1_1:21611879-21611898 | Msa0013860:intron | 30.0% | |
| TAGCTTCCCCATAATATATT+TGG | + | chr1_1:21611888-21611907 | None:intergenic | 30.0% | |
| ! | GACAGAATGTATAATTTTCG+AGG | + | chr1_1:21611932-21611951 | None:intergenic | 30.0% |
| !! | AGGGTATTGTGTTATAGTTA+TGG | - | chr1_1:21612243-21612262 | Msa0013860:intron | 30.0% |
| ! | GGGTATTGTGTTATAGTTAT+GGG | - | chr1_1:21612244-21612263 | Msa0013860:intron | 30.0% |
| GGTATTGTGTTATAGTTATG+GGG | - | chr1_1:21612245-21612264 | Msa0013860:intron | 30.0% | |
| CGAACTTTGAATGTAATGAT+TGG | - | chr1_1:21612311-21612330 | Msa0013860:intron | 30.0% | |
| TAATATATGGGAAAACCATG+AGG | + | chr1_1:21612385-21612404 | None:intergenic | 30.0% | |
| TACAAACCAGTTTCTATAAC+GGG | + | chr1_1:21612688-21612707 | None:intergenic | 30.0% | |
| CTACAAACCAGTTTCTATAA+CGG | + | chr1_1:21612689-21612708 | None:intergenic | 30.0% | |
| ACCTATGAACTGTGTTAAAA+TGG | - | chr1_1:21612827-21612846 | Msa0013860:intron | 30.0% | |
| !! | TCCATTTTAACACAGTTCAT+AGG | + | chr1_1:21612831-21612850 | None:intergenic | 30.0% |
| TTTGTAATTCTTTGGCAGAT+TGG | - | chr1_1:21612924-21612943 | Msa0013860:intron | 30.0% | |
| TATATGCTAGCATGCATATT+TGG | - | chr1_1:21613036-21613055 | Msa0013860:intron | 30.0% | |
| ! | TAGGATTGAGTGTTCTTTTA+TGG | - | chr1_1:21613225-21613244 | Msa0013860:intron | 30.0% |
| ! | CAGCTCTCTTTTATATATCA+AGG | - | chr1_1:21613251-21613270 | Msa0013860:intron | 30.0% |
| ATACATAAGATGAATCTGTC+AGG | - | chr1_1:21613417-21613436 | Msa0013860:intron | 30.0% | |
| !! | GAAATTGAGAGTGTCGATTT+CGG | + | chr1_1:21607576-21607595 | None:intergenic | 35.0% |
| ! | TAGAGTGATAAGTAGGTTGA+GGG | - | chr1_1:21607928-21607947 | Msa0013860:CDS | 35.0% |
| TGTTAGTTACATTGAGAACG+GGG | + | chr1_1:21607962-21607981 | None:intergenic | 35.0% | |
| !!! | GAGGCTTTTAAGATGTTCTT+AGG | + | chr1_1:21608311-21608330 | None:intergenic | 35.0% |
| !!! | GTCTTTATTTTCTGTTCTGG+CGG | + | chr1_1:21608383-21608402 | None:intergenic | 35.0% |
| GGAAGAGTTCATAGTAGAAT+TGG | - | chr1_1:21608466-21608485 | Msa0013860:intron | 35.0% | |
| !!! | ACCGTTTCTGTGTTTTTTCA+TGG | - | chr1_1:21608840-21608859 | Msa0013860:intron | 35.0% |
| GCCATGAAAAAACACAGAAA+CGG | + | chr1_1:21608844-21608863 | None:intergenic | 35.0% | |
| GGTTAGAATTGAATTCTGGT+CGG | + | chr1_1:21608880-21608899 | None:intergenic | 35.0% | |
| CTACTTTGTGTGCTTGAATT+GGG | + | chr1_1:21608901-21608920 | None:intergenic | 35.0% | |
| ACTACTTTGTGTGCTTGAAT+TGG | + | chr1_1:21608902-21608921 | None:intergenic | 35.0% | |
| !! | GGTTTGTTACCATTTGAAAG+TGG | + | chr1_1:21608990-21609009 | None:intergenic | 35.0% |
| TAACAATATGTAAAGGGGAC+AGG | + | chr1_1:21609157-21609176 | None:intergenic | 35.0% | |
| TATACCTTGTGTGTATCAGT+TGG | - | chr1_1:21609265-21609284 | Msa0013860:CDS | 35.0% | |
| TAATCCAACTGATACACACA+AGG | + | chr1_1:21609272-21609291 | None:intergenic | 35.0% | |
| ! | CTAACATGCCATTGTCTTTT+AGG | + | chr1_1:21609383-21609402 | None:intergenic | 35.0% |
| ! | GGAGAAAGTAATTGGTGTTT+GGG | + | chr1_1:21609422-21609441 | None:intergenic | 35.0% |
| ! | TGGAGAAAGTAATTGGTGTT+TGG | + | chr1_1:21609423-21609442 | None:intergenic | 35.0% |
| TTCCTAAAACTATATGGACG+AGG | - | chr1_1:21609471-21609490 | Msa0013860:intron | 35.0% | |
| TACGGTGTACTCTTCATTTA+GGG | + | chr1_1:21609559-21609578 | None:intergenic | 35.0% | |
| ATACGGTGTACTCTTCATTT+AGG | + | chr1_1:21609560-21609579 | None:intergenic | 35.0% | |
| ATAATTATGAGACAACCTGC+TGG | - | chr1_1:21609855-21609874 | Msa0013860:intron | 35.0% | |
| TAATTATGAGACAACCTGCT+GGG | - | chr1_1:21609856-21609875 | Msa0013860:intron | 35.0% | |
| ACATTTGAATATGGATGCAC+CGG | + | chr1_1:21609909-21609928 | None:intergenic | 35.0% | |
| CATCCATATTCAAATGTGGT+TGG | - | chr1_1:21609912-21609931 | Msa0013860:intron | 35.0% | |
| ACACCAACCACATTTGAATA+TGG | + | chr1_1:21609918-21609937 | None:intergenic | 35.0% | |
| ! | ATATTCAAATGTGGTTGGTG+TGG | - | chr1_1:21609917-21609936 | Msa0013860:intron | 35.0% |
| GGGTGACAACAAATAAAAGT+AGG | + | chr1_1:21610079-21610098 | None:intergenic | 35.0% | |
| ATTCAACCTCAAATGGAAAC+GGG | + | chr1_1:21610161-21610180 | None:intergenic | 35.0% | |
| TTCATGGCTTCTTTAAGTGT+TGG | + | chr1_1:21610533-21610552 | None:intergenic | 35.0% | |
| ATGGGATAAAGTGAACTTCA+TGG | + | chr1_1:21610549-21610568 | None:intergenic | 35.0% | |
| ATAATGAGATTGTGAGGTAG+AGG | + | chr1_1:21610869-21610888 | None:intergenic | 35.0% | |
| AGCCAAATAATGAGATTGTG+AGG | + | chr1_1:21610875-21610894 | None:intergenic | 35.0% | |
| AATAAGAAACCCTAGTGAGA+AGG | + | chr1_1:21610900-21610919 | None:intergenic | 35.0% | |
| TGTGATAAAGTTTGCCTTTG+AGG | - | chr1_1:21610935-21610954 | Msa0013860:intron | 35.0% | |
| GTGATAAAGTTTGCCTTTGA+GGG | - | chr1_1:21610936-21610955 | Msa0013860:intron | 35.0% | |
| ! | GCATACTAATTCTAGCTAAG+AGG | + | chr1_1:21611099-21611118 | None:intergenic | 35.0% |
| TACTGAATGTCATCCTCTTT+AGG | - | chr1_1:21611210-21611229 | Msa0013860:CDS | 35.0% | |
| ! | GTTTCTAAAGGGTTCTTATG+AGG | + | chr1_1:21611246-21611265 | None:intergenic | 35.0% |
| ! | ACCATGCTCATGTTTCTAAA+GGG | + | chr1_1:21611257-21611276 | None:intergenic | 35.0% |
| GACATCATAATCCATCACTT+AGG | - | chr1_1:21611331-21611350 | Msa0013860:intron | 35.0% | |
| TCATAATCCATCACTTAGGT+TGG | - | chr1_1:21611335-21611354 | Msa0013860:intron | 35.0% | |
| ! | TTGTCAAGTCTCTTTTCTTG+CGG | - | chr1_1:21611378-21611397 | Msa0013860:intron | 35.0% |
| ! | TCTTCTCTGTCAGTCTTTTA+TGG | - | chr1_1:21611772-21611791 | Msa0013860:intron | 35.0% |
| ! | CTTCTCTGTCAGTCTTTTAT+GGG | - | chr1_1:21611773-21611792 | Msa0013860:intron | 35.0% |
| ! | TTCTCTGTCAGTCTTTTATG+GGG | - | chr1_1:21611774-21611793 | Msa0013860:intron | 35.0% |
| AAATGCTGCAAGGCTAAAAA+AGG | + | chr1_1:21611847-21611866 | None:intergenic | 35.0% | |
| !!! | TTTTTAGCCTTGCAGCATTT+AGG | - | chr1_1:21611847-21611866 | Msa0013860:intron | 35.0% |
| CTTCCCCATAATATATTTGG+TGG | + | chr1_1:21611885-21611904 | None:intergenic | 35.0% | |
| TTCATGCGGAAAATGTATAC+TGG | - | chr1_1:21611995-21612014 | Msa0013860:intron | 35.0% | |
| !!! | TTCTTTTTTGAGGGGATTTC+AGG | + | chr1_1:21612159-21612178 | None:intergenic | 35.0% |
| GTGTTATAGTTATGGGGTTA+TGG | - | chr1_1:21612251-21612270 | Msa0013860:intron | 35.0% | |
| TTATGGGGTTATGGTTCTTA+AGG | - | chr1_1:21612260-21612279 | Msa0013860:intron | 35.0% | |
| TATGGGGTTATGGTTCTTAA+GGG | - | chr1_1:21612261-21612280 | Msa0013860:intron | 35.0% | |
| ! | CTTCTGTGTTATTCTTGTCT+AGG | - | chr1_1:21612359-21612378 | Msa0013860:intron | 35.0% |
| ! | AGACATGATTTTCTATACCG+AGG | - | chr1_1:21612453-21612472 | Msa0013860:intron | 35.0% |
| ! | GTTTTTCCCGTTATAGAAAC+TGG | - | chr1_1:21612679-21612698 | Msa0013860:intron | 35.0% |
| !! | GATACTTTTGTTTGTGGCTA+TGG | - | chr1_1:21612849-21612868 | Msa0013860:intron | 35.0% |
| TGAACAAACTAACCAAGACA+GGG | + | chr1_1:21612899-21612918 | None:intergenic | 35.0% | |
| ATGAACAAACTAACCAAGAC+AGG | + | chr1_1:21612900-21612919 | None:intergenic | 35.0% | |
| AACACTCGCGATAAAAAGAT+AGG | + | chr1_1:21613195-21613214 | None:intergenic | 35.0% | |
| ATCGACACTCTCAATTTCCA+TGG | - | chr1_1:21607578-21607597 | Msa0013860:three_prime_UTR | 40.0% | |
| TAGGGAGTAGAGTGATAAGT+AGG | - | chr1_1:21607921-21607940 | Msa0013860:CDS | 40.0% | |
| GTAGAGTGATAAGTAGGTTG+AGG | - | chr1_1:21607927-21607946 | Msa0013860:CDS | 40.0% | |
| TCGAGATCCTAGGTAAAATC+AGG | - | chr1_1:21608125-21608144 | Msa0013860:CDS | 40.0% | |
| CGAGATCCTAGGTAAAATCA+GGG | - | chr1_1:21608126-21608145 | Msa0013860:CDS | 40.0% | |
| ATCCTAGGTAAAATCAGGGA+GGG | - | chr1_1:21608130-21608149 | Msa0013860:CDS | 40.0% | |
| CACTGAAGTCATTGATGTGA+TGG | - | chr1_1:21608404-21608423 | Msa0013860:intron | 40.0% | |
| TGCAGATTGCACAGAACAAA+GGG | - | chr1_1:21608445-21608464 | Msa0013860:intron | 40.0% | |
| GAGTTCATAGTAGAATTGGG+TGG | - | chr1_1:21608470-21608489 | Msa0013860:intron | 40.0% | |
| TTGAGTAGTGCTACGAATCT+GGG | - | chr1_1:21608587-21608606 | Msa0013860:intron | 40.0% | |
| ! | ATCTGGGTGAATTGTTGCTT+TGG | - | chr1_1:21608603-21608622 | Msa0013860:intron | 40.0% |
| !! | GGTGAATTGTTGCTTTGGTA+AGG | - | chr1_1:21608608-21608627 | Msa0013860:intron | 40.0% |
| !!! | CGTATTTTTAGGGTTTTGGG+AGG | - | chr1_1:21608763-21608782 | Msa0013860:intron | 40.0% |
| AATCATTTGATCCTAGGAGC+AGG | - | chr1_1:21608935-21608954 | Msa0013860:intron | 40.0% | |
| !!! | GATTGCGATTTTGACTACCT+TGG | - | chr1_1:21608957-21608976 | Msa0013860:intron | 40.0% |
| TTGAAAGTGGCAAACATCCA+AGG | + | chr1_1:21608977-21608996 | None:intergenic | 40.0% | |
| !! | GGATGTTTGCCACTTTCAAA+TGG | - | chr1_1:21608978-21608997 | Msa0013860:intron | 40.0% |
| AGGCTATGAAACACTAACAC+AGG | + | chr1_1:21609363-21609382 | None:intergenic | 40.0% | |
| ! | GAAAGTAATTGGTGTTTGGG+TGG | + | chr1_1:21609419-21609438 | None:intergenic | 40.0% |
| ! | CTCCTCGTCCATATAGTTTT+AGG | + | chr1_1:21609476-21609495 | None:intergenic | 40.0% |
| ACGGTGTACTCTTCATTTAG+GGG | + | chr1_1:21609558-21609577 | None:intergenic | 40.0% | |
| ACAGCCATGAAGTAATGACT+GGG | + | chr1_1:21609733-21609752 | None:intergenic | 40.0% | |
| AACAGCCATGAAGTAATGAC+TGG | + | chr1_1:21609734-21609753 | None:intergenic | 40.0% | |
| TGTGATTACAAGAGCAACCA+AGG | + | chr1_1:21609805-21609824 | None:intergenic | 40.0% | |
| ATAGGAGCAATATGGAACTG+AGG | - | chr1_1:21609826-21609845 | Msa0013860:intron | 40.0% | |
| TAGGAGCAATATGGAACTGA+GGG | - | chr1_1:21609827-21609846 | Msa0013860:intron | 40.0% | |
| AATTATGAGACAACCTGCTG+GGG | - | chr1_1:21609857-21609876 | Msa0013860:intron | 40.0% | |
| GGTGCATCCATATTCAAATG+TGG | - | chr1_1:21609908-21609927 | Msa0013860:intron | 40.0% | |
| !!! | TTTGATTTTCCTCTGGGACT+AGG | - | chr1_1:21610117-21610136 | Msa0013860:intron | 40.0% |
| TTCAACCTCAAATGGAAACG+GGG | + | chr1_1:21610160-21610179 | None:intergenic | 40.0% | |
| TGCTTTGGTCATAGCAGTTT+AGG | - | chr1_1:21610240-21610259 | Msa0013860:intron | 40.0% | |
| AACATAATCCCTTTCCCACT+AGG | - | chr1_1:21610711-21610730 | Msa0013860:intron | 40.0% | |
| ! | ATTGTGAGGTAGAGGTATAG+GGG | + | chr1_1:21610861-21610880 | None:intergenic | 40.0% |
| ! | GATTGTGAGGTAGAGGTATA+GGG | + | chr1_1:21610862-21610881 | None:intergenic | 40.0% |
| ! | AGATTGTGAGGTAGAGGTAT+AGG | + | chr1_1:21610863-21610882 | None:intergenic | 40.0% |
| ATTTGGCTATCCTTCTCACT+AGG | - | chr1_1:21610887-21610906 | Msa0013860:intron | 40.0% | |
| TTTGGCTATCCTTCTCACTA+GGG | - | chr1_1:21610888-21610907 | Msa0013860:intron | 40.0% | |
| AGAGGCAAACATAGGATTCA+CGG | + | chr1_1:21610991-21611010 | None:intergenic | 40.0% | |
| ATATAGGGAGAGGCAAACAT+AGG | + | chr1_1:21610999-21611018 | None:intergenic | 40.0% | |
| TTATGGGGAAATATAGGGAG+AGG | + | chr1_1:21611009-21611028 | None:intergenic | 40.0% | |
| TACTTAAACAACGAGACTCG+TGG | - | chr1_1:21611050-21611069 | Msa0013860:intron | 40.0% | |
| TCTAGCTAAGAGGTGAAAAC+TGG | + | chr1_1:21611089-21611108 | None:intergenic | 40.0% | |
| GTATGCTTCCAACTTGACTT+AGG | - | chr1_1:21611113-21611132 | Msa0013860:CDS | 40.0% | |
| GAGATAAGCTTCGAAAACAC+AGG | + | chr1_1:21611176-21611195 | None:intergenic | 40.0% | |
| ! | ACCCTTTAGAAACATGAGCA+TGG | - | chr1_1:21611253-21611272 | Msa0013860:CDS | 40.0% |
| ! | GACCATGCTCATGTTTCTAA+AGG | + | chr1_1:21611258-21611277 | None:intergenic | 40.0% |
| AACACTACCAACCTAAGTGA+TGG | + | chr1_1:21611345-21611364 | None:intergenic | 40.0% | |
| ATTCAAAACACGAGCATGCA+TGG | - | chr1_1:21611445-21611464 | Msa0013860:intron | 40.0% | |
| CATGCATGGTCATTACTTTG+TGG | - | chr1_1:21611459-21611478 | Msa0013860:intron | 40.0% | |
| !! | GTGGATTGGCTATGAAAAGA+TGG | - | chr1_1:21611500-21611519 | Msa0013860:intron | 40.0% |
| TGATGAGCATCAATTACAGC+AGG | + | chr1_1:21611548-21611567 | None:intergenic | 40.0% | |
| TGCTGTAATTGATGCTCATC+AGG | - | chr1_1:21611547-21611566 | Msa0013860:intron | 40.0% | |
| ! | ATTCAGCGTTCTTGCTATCA+TGG | - | chr1_1:21611614-21611633 | Msa0013860:intron | 40.0% |
| GACTGACAGAGAAGACTATA+GGG | + | chr1_1:21611767-21611786 | None:intergenic | 40.0% | |
| AGACTGACAGAGAAGACTAT+AGG | + | chr1_1:21611768-21611787 | None:intergenic | 40.0% | |
| CGGAAAATGTATACTGGACA+TGG | - | chr1_1:21612001-21612020 | Msa0013860:intron | 40.0% | |
| TGCTAATGCAGAAGAAGTTC+AGG | - | chr1_1:21612223-21612242 | Msa0013860:intron | 40.0% | |
| GCTAATGCAGAAGAAGTTCA+GGG | - | chr1_1:21612224-21612243 | Msa0013860:intron | 40.0% | |
| ATGGGGTTATGGTTCTTAAG+GGG | - | chr1_1:21612262-21612281 | Msa0013860:intron | 40.0% | |
| TTATTCTTGTCTAGGCCTCA+TGG | - | chr1_1:21612367-21612386 | Msa0013860:intron | 40.0% | |
| GACAGATGATACAAGAGAAC+AGG | + | chr1_1:21612421-21612440 | None:intergenic | 40.0% | |
| !! | ACCGAGGTTTTATGTTGAAC+TGG | - | chr1_1:21612469-21612488 | Msa0013860:intron | 40.0% |
| GCCAGTTCAACATAAAACCT+CGG | + | chr1_1:21612473-21612492 | None:intergenic | 40.0% | |
| TTAGTTAGATGCACTCCCAT+TGG | - | chr1_1:21612601-21612620 | Msa0013860:intron | 40.0% | |
| CTTCGTTTGCTTCCTCATTT+CGG | - | chr1_1:21612977-21612996 | Msa0013860:intron | 40.0% | |
| AAACAGCGTAGATCTCAAGA+AGG | + | chr1_1:21613147-21613166 | None:intergenic | 40.0% | |
| !! | CTGTCAGGTTTTGTAGTCAA+TGG | - | chr1_1:21613432-21613451 | Msa0013860:intron | 40.0% |
| AGGAGAAGAAGAAGAAGCCA+TGG | + | chr1_1:21607598-21607617 | None:intergenic | 45.0% | |
| TTCTTCTTCTTCTCCTCACG+AGG | - | chr1_1:21607602-21607621 | Msa0013860:three_prime_UTR | 45.0% | |
| TAGATGGAACAAACCTCGTG+AGG | + | chr1_1:21607618-21607637 | None:intergenic | 45.0% | |
| GATCCTAGGTAAAATCAGGG+AGG | - | chr1_1:21608129-21608148 | Msa0013860:CDS | 45.0% | |
| TCCTAGGTAAAATCAGGGAG+GGG | - | chr1_1:21608131-21608150 | Msa0013860:CDS | 45.0% | |
| TCTAGATCCTGGTCCTGAAT+CGG | - | chr1_1:21608156-21608175 | Msa0013860:intron | 45.0% | |
| GTGCAGATTGCACAGAACAA+AGG | - | chr1_1:21608444-21608463 | Msa0013860:intron | 45.0% | |
| GTTGAGTAGTGCTACGAATC+TGG | - | chr1_1:21608586-21608605 | Msa0013860:intron | 45.0% | |
| TGGTAAGGCTCCACAGTTTA+TGG | - | chr1_1:21608623-21608642 | Msa0013860:intron | 45.0% | |
| GGTAAGGCTCCACAGTTTAT+GGG | - | chr1_1:21608624-21608643 | Msa0013860:intron | 45.0% | |
| AAAATCGCAATCCTGCTCCT+AGG | + | chr1_1:21608949-21608968 | None:intergenic | 45.0% | |
| ! | GTAAAGGGGACAGGAGATTT+TGG | + | chr1_1:21609148-21609167 | None:intergenic | 45.0% |
| TCTTTGGCATCATTGTGTGC+CGG | - | chr1_1:21609314-21609333 | Msa0013860:CDS | 45.0% | |
| CAGCCATGAAGTAATGACTG+GGG | + | chr1_1:21609732-21609751 | None:intergenic | 45.0% | |
| TTGAATATGGATGCACCGGA+TGG | + | chr1_1:21609905-21609924 | None:intergenic | 45.0% | |
| !! | AAACGCGAGCAAAAGTGCTT+CGG | - | chr1_1:21609965-21609984 | Msa0013860:intron | 45.0% |
| AAAATGAGACCTAGTCCCAG+AGG | + | chr1_1:21610129-21610148 | None:intergenic | 45.0% | |
| GTTTACCCCGTTTCCATTTG+AGG | - | chr1_1:21610152-21610171 | Msa0013860:intron | 45.0% | |
| !! | CAAATTGGGAGTTGATGGAG+TGG | - | chr1_1:21610193-21610212 | Msa0013860:intron | 45.0% |
| TAACCTCACCTAGTGGGAAA+GGG | + | chr1_1:21610722-21610741 | None:intergenic | 45.0% | |
| TTAACCTCACCTAGTGGGAA+AGG | + | chr1_1:21610723-21610742 | None:intergenic | 45.0% | |
| GTAGCTTAACCTCACCTAGT+GGG | + | chr1_1:21610728-21610747 | None:intergenic | 45.0% | |
| TGTAGCTTAACCTCACCTAG+TGG | + | chr1_1:21610729-21610748 | None:intergenic | 45.0% | |
| AATACTTCGAGCACCCTCAA+AGG | + | chr1_1:21610952-21610971 | None:intergenic | 45.0% | |
| GAGGCAAACATAGGATTCAC+GGG | + | chr1_1:21610990-21611009 | None:intergenic | 45.0% | |
| AAACAACGAGACTCGTGGTA+CGG | - | chr1_1:21611055-21611074 | Msa0013860:CDS | 45.0% | |
| ! | ATTCAGTAGCACTGGAGCTA+TGG | + | chr1_1:21611198-21611217 | None:intergenic | 45.0% |
| AGGATGACATTCAGTAGCAC+TGG | + | chr1_1:21611206-21611225 | None:intergenic | 45.0% | |
| AGGTTGCAGAACACCTAAAG+AGG | + | chr1_1:21611226-21611245 | None:intergenic | 45.0% | |
| TCTTGCGGCTCATAGAATTG+AGG | - | chr1_1:21611393-21611412 | Msa0013860:intron | 45.0% | |
| ! | TGATGTGCTCTAGGTGACTT+TGG | + | chr1_1:21611969-21611988 | None:intergenic | 45.0% |
| GAACGACAATGATGTGCTCT+AGG | + | chr1_1:21611978-21611997 | None:intergenic | 45.0% | |
| GCACATCATTGTCGTTCATG+CGG | - | chr1_1:21611981-21612000 | Msa0013860:intron | 45.0% | |
| GAGTGCATCTAACTAAGCAC+TGG | + | chr1_1:21612597-21612616 | None:intergenic | 45.0% | |
| TAAGTCTCCATGCTAGATCC+CGG | + | chr1_1:21613106-21613125 | None:intergenic | 45.0% | |
| !! | ACGCTGTTTCTATCGTCTAG+AGG | - | chr1_1:21613158-21613177 | Msa0013860:intron | 45.0% |
| GCGAGTGTTTCATTGCAGAT+AGG | - | chr1_1:21613206-21613225 | Msa0013860:intron | 45.0% | |
| ! | ACTTCCGTGTTACTCAGAAG+AGG | - | chr1_1:21613390-21613409 | Msa0013860:intron | 45.0% |
| GAACGCGTGTGTGTTTACCT+GGG | + | chr1_1:21607533-21607552 | None:intergenic | 50.0% | |
| AGAACGCGTGTGTGTTTACC+TGG | + | chr1_1:21607534-21607553 | None:intergenic | 50.0% | |
| GTAGTCAGACTCGAGATCCT+AGG | - | chr1_1:21608115-21608134 | Msa0013860:CDS | 50.0% | |
| ! | ACCCCTCCCTGATTTTACCT+AGG | + | chr1_1:21608135-21608154 | None:intergenic | 50.0% |
| CTAGATCCTGGTCCTGAATC+GGG | - | chr1_1:21608157-21608176 | Msa0013860:intron | 50.0% | |
| TAGATCCTGGTCCTGAATCG+GGG | - | chr1_1:21608158-21608177 | Msa0013860:intron | 50.0% | |
| TGAATCGGGGGACTGTTACA+CGG | - | chr1_1:21608171-21608190 | Msa0013860:intron | 50.0% | |
| ! | GGGGACTGTTACACGGATTT+TGG | - | chr1_1:21608178-21608197 | Msa0013860:intron | 50.0% |
| CAGCCCCAGTCATTACTTCA+TGG | - | chr1_1:21609726-21609745 | Msa0013860:intron | 50.0% | |
| CTTCGCGTTATGCTTCCATC+CGG | - | chr1_1:21609887-21609906 | Msa0013860:intron | 50.0% | |
| !! | AACGCGAGCAAAAGTGCTTC+GGG | - | chr1_1:21609966-21609985 | Msa0013860:intron | 50.0% |
| AATCCCTTTCCCACTAGGTG+AGG | - | chr1_1:21610716-21610735 | Msa0013860:intron | 50.0% | |
| ! | GTAGAGGTATAGGGGTAGCA+GGG | + | chr1_1:21610853-21610872 | None:intergenic | 50.0% |
| ! | TTTTTGCAGTTGGAGGGGTG+TGG | - | chr1_1:21611733-21611752 | Msa0013860:intron | 50.0% |
| !! | TTTTGCAGTTGGAGGGGTGT+GGG | - | chr1_1:21611734-21611753 | Msa0013860:intron | 50.0% |
| CAGCACACCTAAATGCTGCA+AGG | + | chr1_1:21611857-21611876 | None:intergenic | 50.0% | |
| CTTGCAGCATTTAGGTGTGC+TGG | - | chr1_1:21611855-21611874 | Msa0013860:intron | 50.0% | |
| ATTATGGGGAAGCTACCCCA+CGG | - | chr1_1:21611893-21611912 | Msa0013860:intron | 50.0% | |
| ATGGTTCTTAAGGGGCTCGA+AGG | - | chr1_1:21612270-21612289 | Msa0013860:intron | 50.0% | |
| GATAAGGGGATGGAGATACC+TGG | - | chr1_1:21612535-21612554 | Msa0013860:intron | 50.0% | |
| TTAGATGCACTCCCATTGGC+AGG | - | chr1_1:21612605-21612624 | Msa0013860:intron | 50.0% | |
| TAGATGCACTCCCATTGGCA+GGG | - | chr1_1:21612606-21612625 | Msa0013860:intron | 50.0% | |
| ! | GTCTCTAACTTGCCCTGTCT+TGG | - | chr1_1:21612884-21612903 | Msa0013860:intron | 50.0% |
| TTGGCAGATTGGCAACTGTG+TGG | - | chr1_1:21612935-21612954 | Msa0013860:intron | 50.0% | |
| TGGCAGATTGGCAACTGTGT+GGG | - | chr1_1:21612936-21612955 | Msa0013860:intron | 50.0% | |
| CCACCATTGTCATACTCCCT+CGG | - | chr1_1:21613059-21613078 | Msa0013860:intron | 50.0% | |
| ATACTCCCTCGGACGCTTAA+AGG | - | chr1_1:21613070-21613089 | Msa0013860:intron | 50.0% | |
| TACTCCCTCGGACGCTTAAA+GGG | - | chr1_1:21613071-21613090 | Msa0013860:intron | 50.0% | |
| CATACCCTTTAAGCGTCCGA+GGG | + | chr1_1:21613078-21613097 | None:intergenic | 50.0% | |
| TCATACCCTTTAAGCGTCCG+AGG | + | chr1_1:21613079-21613098 | None:intergenic | 50.0% | |
| ! | GGACGCTTAAAGGGTATGAC+TGG | - | chr1_1:21613080-21613099 | Msa0013860:intron | 50.0% |
| ! | GCTTAAAGGGTATGACTGGC+CGG | - | chr1_1:21613084-21613103 | Msa0013860:intron | 50.0% |
| ! | CTTAAAGGGTATGACTGGCC+GGG | - | chr1_1:21613085-21613104 | Msa0013860:intron | 50.0% |
| CGTGCCTCTTCTGAGTAACA+CGG | + | chr1_1:21613397-21613416 | None:intergenic | 50.0% | |
| AGATCCTGGTCCTGAATCGG+GGG | - | chr1_1:21608159-21608178 | Msa0013860:intron | 55.0% | |
| GTGTAACAGTCCCCCGATTC+AGG | + | chr1_1:21608172-21608191 | None:intergenic | 55.0% | |
| TCTGTTCTGGCGGCTGCATT+GGG | + | chr1_1:21608373-21608392 | None:intergenic | 55.0% | |
| TTCTGTTCTGGCGGCTGCAT+TGG | + | chr1_1:21608374-21608393 | None:intergenic | 55.0% | |
| ACCGCACACGACACTAACAC+CGG | + | chr1_1:21609336-21609355 | None:intergenic | 55.0% | |
| ! | GGTAGAGGTATAGGGGTAGC+AGG | + | chr1_1:21610854-21610873 | None:intergenic | 55.0% |
| ACGAGACTCGTGGTACGGTA+TGG | - | chr1_1:21611060-21611079 | Msa0013860:CDS | 55.0% | |
| AGGGGATGGAGATACCTGGA+AGG | - | chr1_1:21612539-21612558 | Msa0013860:intron | 55.0% | |
| TTCACCAGAGCCCTGCCAAT+GGG | + | chr1_1:21612619-21612638 | None:intergenic | 55.0% | |
| ATTCACCAGAGCCCTGCCAA+TGG | + | chr1_1:21612620-21612639 | None:intergenic | 55.0% | |
| TGCTCAGCACTGCCGAAATG+AGG | + | chr1_1:21612992-21613011 | None:intergenic | 55.0% | |
| ! | CCGAGGGAGTATGACAATGG+TGG | + | chr1_1:21613062-21613081 | None:intergenic | 55.0% |
| ! | CGTCCGAGGGAGTATGACAA+TGG | + | chr1_1:21613065-21613084 | None:intergenic | 55.0% |
| AGGGAGGGGTCTCTAGATCC+TGG | - | chr1_1:21608145-21608164 | Msa0013860:intron | 60.0% | |
| CTGTTCTGGCGGCTGCATTG+GGG | + | chr1_1:21608372-21608391 | None:intergenic | 60.0% | |
| ! | GCCGGTGTTAGTGTCGTGTG+CGG | - | chr1_1:21609332-21609351 | Msa0013860:CDS | 60.0% |
| GAGACAACCTGCTGGGGTTG+TGG | - | chr1_1:21609863-21609882 | Msa0013860:intron | 60.0% | |
| !! | GCGAGCAAAAGTGCTTCGGG+TGG | - | chr1_1:21609969-21609988 | Msa0013860:intron | 60.0% |
| AGGTCACCTTGCCCTACCGT+GGG | + | chr1_1:21611912-21611931 | None:intergenic | 60.0% | |
| ! | TGACTGGCCGGGATCTAGCA+TGG | - | chr1_1:21613096-21613115 | Msa0013860:intron | 60.0% |
| CAGTCCCCCGATTCAGGACC+AGG | + | chr1_1:21608166-21608185 | None:intergenic | 65.0% | |
| GCGAAGTCCACAACCCCAGC+AGG | + | chr1_1:21609873-21609892 | None:intergenic | 65.0% | |
| TGGGGAAGCTACCCCACGGT+AGG | - | chr1_1:21611897-21611916 | Msa0013860:intron | 65.0% | |
| GGGGAAGCTACCCCACGGTA+GGG | - | chr1_1:21611898-21611917 | Msa0013860:intron | 65.0% | |
| AGCTACCCCACGGTAGGGCA+AGG | - | chr1_1:21611903-21611922 | Msa0013860:intron | 65.0% | |
| GGTCACCTTGCCCTACCGTG+GGG | + | chr1_1:21611911-21611930 | None:intergenic | 65.0% | |
| GAGGTCACCTTGCCCTACCG+TGG | + | chr1_1:21611913-21611932 | None:intergenic | 65.0% | |
| CACTCCCATTGGCAGGGCTC+TGG | - | chr1_1:21612612-21612631 | Msa0013860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21607530 | 21613575 | 21607530 | ID=Msa0013860;Name=Msa0013860 |
| chr1_1 | mRNA | 21607530 | 21613575 | 21607530 | ID=Msa0013860-mRNA-1;Parent=Msa0013860;Name=Msa0013860-mRNA-1;_AED=0.02;_eAED=0.02;_QI=67|1|1|1|1|1|4|151|343 |
| chr1_1 | exon | 21607530 | 21608163 | 21607530 | ID=Msa0013860-mRNA-1:exon:7644;Parent=Msa0013860-mRNA-1 |
| chr1_1 | exon | 21609065 | 21609363 | 21609065 | ID=Msa0013860-mRNA-1:exon:7643;Parent=Msa0013860-mRNA-1 |
| chr1_1 | exon | 21611053 | 21611275 | 21611053 | ID=Msa0013860-mRNA-1:exon:7642;Parent=Msa0013860-mRNA-1 |
| chr1_1 | exon | 21613482 | 21613575 | 21613482 | ID=Msa0013860-mRNA-1:exon:7641;Parent=Msa0013860-mRNA-1 |
| chr1_1 | five_prime_UTR | 21613509 | 21613575 | 21613509 | ID=Msa0013860-mRNA-1:five_prime_utr;Parent=Msa0013860-mRNA-1 |
| chr1_1 | CDS | 21613482 | 21613508 | 21613482 | ID=Msa0013860-mRNA-1:cds;Parent=Msa0013860-mRNA-1 |
| chr1_1 | CDS | 21611053 | 21611275 | 21611053 | ID=Msa0013860-mRNA-1:cds;Parent=Msa0013860-mRNA-1 |
| chr1_1 | CDS | 21609065 | 21609363 | 21609065 | ID=Msa0013860-mRNA-1:cds;Parent=Msa0013860-mRNA-1 |
| chr1_1 | CDS | 21607681 | 21608163 | 21607681 | ID=Msa0013860-mRNA-1:cds;Parent=Msa0013860-mRNA-1 |
| chr1_1 | three_prime_UTR | 21607530 | 21607680 | 21607530 | ID=Msa0013860-mRNA-1:three_prime_utr;Parent=Msa0013860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
