AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0153770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153770 MtrunA17_Chr1g0163561 97.668 343 8 0 1 343 1 343 0.0 694
Msa0153770 MtrunA17_Chr4g0037991 65.868 334 113 1 10 343 29 361 8.20e-173 484
Msa0153770 MtrunA17_Chr4g0009911 35.938 128 60 3 102 215 51 170 1.25e-16 79.3
Msa0153770 MtrunA17_Chr1g0199411 34.694 147 86 4 75 215 17 159 1.09e-15 76.3
Msa0153770 MtrunA17_Chr4g0011001 32.121 165 85 5 56 193 3 167 3.59e-13 69.3
Msa0153770 MtrunA17_Chr5g0406311 41.270 63 37 0 153 215 170 232 3.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0153770 AT3G18620.1 56.325 332 140 2 17 343 14 345 1.49e-140 402
Msa0153770 AT3G09320.1 29.583 240 122 7 72 299 12 216 3.28e-15 75.5
Msa0153770 AT4G22750.1 36.207 116 71 1 97 212 65 177 3.04e-13 69.7
Msa0153770 AT5G05070.1 28.931 159 82 5 152 310 172 299 1.99e-12 68.2
Msa0153770 AT5G04270.1 44.444 63 35 0 153 215 94 156 7.69e-12 65.5
Msa0153770 AT3G56920.1 44.444 63 35 0 152 214 143 205 9.81e-12 65.9
Msa0153770 AT4G00840.2 47.170 53 28 0 141 193 101 153 3.42e-11 62.8
Msa0153770 AT2G40990.1 39.683 63 38 0 152 214 161 223 6.27e-11 63.5
Msa0153770 AT4G00840.1 47.170 53 28 0 141 193 101 153 8.87e-11 62.4

Find 70 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTCCCTCGGACGCTTAA+AGG 0.183327 1_4:-17642883 Msa0153770:CDS
TAGCTTCCCCATAATATATT+TGG 0.224116 1_4:+17644532 None:intergenic
GAACACCACCAAATATATTA+TGG 0.225012 1_4:-17644540 Msa0153770:CDS
TATATGCTAGCATGCATATT+TGG 0.260054 1_4:-17642917 Msa0153770:CDS
CTCTCCACCCGAAGCACTTT+TGG 0.269374 1_4:+17646340 None:intergenic
CTTCGTTTGCTTCCTCATTT+CGG 0.338629 1_4:-17642976 Msa0153770:CDS
ACACCAACCACATTTGAATA+TGG 0.339245 1_4:+17646398 None:intergenic
AACGCGTGTGTGTGTTTACC+TGG 0.394037 1_4:+17648746 None:intergenic
AACACCACCAAATATATTAT+GGG 0.394441 1_4:-17644539 Msa0153770:CDS
GAAATTGAGAGTGTCGATTT+CGG 0.409805 1_4:+17648702 None:intergenic
AACGCGGCCAAAAGTGCTTC+GGG 0.421765 1_4:-17646347 Msa0153770:CDS
AGACTGACAGAGAAGACTAT+AGG 0.425751 1_4:+17644652 None:intergenic
GACTGACAGAGAAGACTATA+GGG 0.431769 1_4:+17644653 None:intergenic
AATCACATATAGGAGCAATA+TGG 0.432779 1_4:-17646495 Msa0153770:intron
GCGAGTGTTTCATTGCAGAT+AGG 0.447344 1_4:-17642747 Msa0153770:CDS
AAACGCGGCCAAAAGTGCTT+CGG 0.452212 1_4:-17646348 Msa0153770:CDS
GAGACAACCTGCTGGGGTTG+TGG 0.454554 1_4:-17646450 Msa0153770:CDS
TACTCCCTCGGACGCTTAAA+GGG 0.462436 1_4:-17642882 Msa0153770:CDS
CGGAAAATGTATACTGGACA+TGG 0.471242 1_4:-17644416 Msa0153770:CDS
CTTGCAGCATTTAGGTGTGC+TGG 0.481835 1_4:-17644562 Msa0153770:CDS
TTCATGCGGAAAATGTATAC+TGG 0.483089 1_4:-17644422 Msa0153770:CDS
TGATGTGCTCTAGGTGACTT+TGG 0.487243 1_4:+17644451 None:intergenic
GCTTAAAGGGTATGACTGGC+CGG 0.495021 1_4:-17642869 Msa0153770:CDS
CTTCCCCATAATATATTTGG+TGG 0.506867 1_4:+17644535 None:intergenic
GAGGTCACCTTGCCCTACCG+TGG 0.513800 1_4:+17644507 None:intergenic
AGGAGAAGAAGAAGAAGCCA+TGG 0.531669 1_4:+17648680 None:intergenic
GGACGCTTAAAGGGTATGAC+TGG 0.532460 1_4:-17642873 Msa0153770:CDS
AGCTACCCCACGGTAGGGCA+AGG 0.533042 1_4:-17644514 Msa0153770:CDS
ATACATAAGATGAATCTGTC+AGG 0.534757 1_4:-17642536 Msa0153770:exon
AGGTCACCTTGCCCTACCGT+GGG 0.535258 1_4:+17644508 None:intergenic
ATCGACACTCTCAATTTCCA+TGG 0.535306 1_4:-17648697 Msa0153770:exon
TGCTCAGCACTGCCGAAATG+AGG 0.539557 1_4:+17642964 None:intergenic
TGGCAGATTGGCAACTGTGT+GGG 0.550063 1_4:-17643017 Msa0153770:intron
TAATTATGAGACAACCTGCT+GGG 0.551035 1_4:-17646457 Msa0153770:CDS
TTCTTCTTCTTCTCCTCACG+AGG 0.553010 1_4:-17648673 Msa0153770:intron
ACATTTGAATATGGATGCAC+CGG 0.555614 1_4:+17646407 None:intergenic
GCGAAGTCCACAACCCCAGC+AGG 0.560586 1_4:+17646443 None:intergenic
CTTAAAGGGTATGACTGGCC+GGG 0.561212 1_4:-17642868 Msa0153770:CDS
ATAATTATGAGACAACCTGC+TGG 0.564546 1_4:-17646458 Msa0153770:CDS
CTTCGCGTTATGCTTCCATC+CGG 0.565639 1_4:-17646426 Msa0153770:CDS
TTGAATATGGATGCACCGGA+TGG 0.567232 1_4:+17646411 None:intergenic
CCACCATTGTCATACTCCCT+CGG 0.568831 1_4:-17642894 Msa0153770:CDS
TAAGTCTCCATGCTAGATCC+CGG 0.577695 1_4:+17642850 None:intergenic
GAACGACAATGATGTGCTCT+AGG 0.583530 1_4:+17644442 None:intergenic
TGACTGGCCGGGATCTAGCA+TGG 0.593847 1_4:-17642857 Msa0153770:CDS
TCATACCCTTTAAGCGTCCG+AGG 0.598416 1_4:+17642877 None:intergenic
TGGGGAAGCTACCCCACGGT+AGG 0.603154 1_4:-17644520 Msa0153770:CDS
TTGGCAGATTGGCAACTGTG+TGG 0.604212 1_4:-17643018 Msa0153770:intron
TAGGAGCAATATGGAACTGA+GGG 0.616913 1_4:-17646486 Msa0153770:CDS
CATCCATATTCAAATGTGGT+TGG 0.621569 1_4:-17646401 Msa0153770:CDS
ACGCTGTTTCTATCGTCTAG+AGG 0.621959 1_4:-17642795 Msa0153770:CDS
GGGGAAGCTACCCCACGGTA+GGG 0.622081 1_4:-17644519 Msa0153770:CDS
GCACATCATTGTCGTTCATG+CGG 0.626648 1_4:-17644436 Msa0153770:CDS
ACACCACCAAATATATTATG+GGG 0.627205 1_4:-17644538 Msa0153770:CDS
ACGCGTGTGTGTGTTTACCT+GGG 0.632697 1_4:+17648747 None:intergenic
AAACAGCGTAGATCTCAAGA+AGG 0.634753 1_4:+17642809 None:intergenic
ATATTCAAATGTGGTTGGTG+TGG 0.638886 1_4:-17646396 Msa0153770:CDS
CGTGCCTCTTCTGAGTAACA+CGG 0.643444 1_4:+17642559 None:intergenic
CAGCACACCTAAATGCTGCA+AGG 0.644057 1_4:+17644563 None:intergenic
ATAGGAGCAATATGGAACTG+AGG 0.650745 1_4:-17646487 Msa0153770:intron
ACTTCCGTGTTACTCAGAAG+AGG 0.655103 1_4:-17642563 Msa0153770:CDS
CCGAGGGAGTATGACAATGG+TGG 0.659728 1_4:+17642894 None:intergenic
CATACCCTTTAAGCGTCCGA+GGG 0.660431 1_4:+17642878 None:intergenic
CGTCCGAGGGAGTATGACAA+TGG 0.661120 1_4:+17642891 None:intergenic
GGTGCATCCATATTCAAATG+TGG 0.668516 1_4:-17646405 Msa0153770:CDS
GCGGCCAAAAGTGCTTCGGG+TGG 0.668820 1_4:-17646344 Msa0153770:CDS
AATTATGAGACAACCTGCTG+GGG 0.682923 1_4:-17646456 Msa0153770:CDS
TAGATGGAACAAACCTCGTG+AGG 0.699163 1_4:+17648660 None:intergenic
GGTCACCTTGCCCTACCGTG+GGG 0.699639 1_4:+17644509 None:intergenic
ATTATGGGGAAGCTACCCCA+CGG 0.740734 1_4:-17644524 Msa0153770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTCGTTTTTTTTT+TGG - chr1_4:17642564-17642583 Msa0153770:CDS 10.0%
!!! ATATTTTTTTATTGTGATTA+AGG - chr1_4:17642750-17642769 Msa0153770:CDS 10.0%
!!! TACATAATATTTTAAATCAA+AGG + chr1_4:17644353-17644372 None:intergenic 10.0%
!! AATTTATACAAAATTCAAAT+TGG - chr1_4:17645011-17645030 Msa0153770:intron 10.0%
!! ATTTATACAAAATTCAAATT+GGG - chr1_4:17645012-17645031 Msa0153770:intron 10.0%
!!! ATTTTTATTTTTTTTTCAGT+TGG - chr1_4:17646452-17646471 Msa0153770:CDS 10.0%
!!! AGTTTTATTATTGAAAAATA+AGG + chr1_4:17646862-17646881 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTTTGAG+GGG + chr1_4:17646896-17646915 None:intergenic 10.0%
!!! TTATCTATTCCTTTAATTTT+GGG - chr1_4:17642618-17642637 Msa0153770:CDS 15.0%
!! TACATATGAATTTATCAATT+TGG + chr1_4:17643080-17643099 None:intergenic 15.0%
!! TTTATAAAATAAGTCTAAAG+CGG - chr1_4:17643140-17643159 Msa0153770:intron 15.0%
!!! GGGTTTTTTTAAATATTTTT+CGG + chr1_4:17643177-17643196 None:intergenic 15.0%
!!! TGCTATATTTGTTATATTAT+CGG + chr1_4:17643869-17643888 None:intergenic 15.0%
!! AATCTATAACAATATGTAAA+GGG + chr1_4:17643998-17644017 None:intergenic 15.0%
!! TAATCTATAACAATATGTAA+AGG + chr1_4:17643999-17644018 None:intergenic 15.0%
!! ATTAAATGAAATGATTGTTA+AGG - chr1_4:17644057-17644076 Msa0153770:intron 15.0%
!! TTAAATGAAATGATTGTTAA+GGG - chr1_4:17644058-17644077 Msa0153770:intron 15.0%
!! TTCACATTTATATCTAAATA+CGG + chr1_4:17644410-17644429 None:intergenic 15.0%
!! AAATCCCTTAAAATAAAAAT+TGG - chr1_4:17645239-17645258 Msa0153770:intron 15.0%
!!! ATAGAAAGTATAATGTTATA+AGG + chr1_4:17646032-17646051 None:intergenic 15.0%
!!! AAACAAGTATATATATTTTG+TGG + chr1_4:17648726-17648745 None:intergenic 15.0%
!! AAAATGATGAGAAAAGAAAA+AGG + chr1_4:17642517-17642536 None:intergenic 20.0%
!!! CTTATCTATTCCTTTAATTT+TGG - chr1_4:17642617-17642636 Msa0153770:CDS 20.0%
!! TGTCATTCAATAACAATTAT+TGG - chr1_4:17642861-17642880 Msa0153770:CDS 20.0%
!! GTCATTCAATAACAATTATT+GGG - chr1_4:17642862-17642881 Msa0153770:CDS 20.0%
!! TATGAATTTATCAATTTGGT+AGG + chr1_4:17643076-17643095 None:intergenic 20.0%
!! CACTTAAAAAAACATCAAAA+TGG - chr1_4:17643227-17643246 Msa0153770:intron 20.0%
!! AACAAACTAAGCAAAAATTT+GGG + chr1_4:17643500-17643519 None:intergenic 20.0%
!! TAACAAACTAAGCAAAAATT+TGG + chr1_4:17643501-17643520 None:intergenic 20.0%
!!! GCACAATATATCATTTTTAT+AGG - chr1_4:17643914-17643933 Msa0153770:intron 20.0%
!!! TTTATAGGCAAATTTGTTTA+AGG - chr1_4:17643929-17643948 Msa0153770:intron 20.0%
!!! TTATAGGCAAATTTGTTTAA+GGG - chr1_4:17643930-17643949 Msa0153770:intron 20.0%
!! ATCTATAACAATATGTAAAG+GGG + chr1_4:17643997-17644016 None:intergenic 20.0%
!! TAAATGAAATGATTGTTAAG+GGG - chr1_4:17644059-17644078 Msa0153770:intron 20.0%
!!! AAGTAAATATCTGAAACTAT+AGG - chr1_4:17644428-17644447 Msa0153770:CDS 20.0%
!! CTATAGTTGTTTATTAAACT+CGG - chr1_4:17644467-17644486 Msa0153770:CDS 20.0%
!! TATAGTTGTTTATTAAACTC+GGG - chr1_4:17644468-17644487 Msa0153770:CDS 20.0%
!!! CTTTTTGTTTTGATTTGTAA+TGG + chr1_4:17644778-17644797 None:intergenic 20.0%
!! ATCCTAACATATATTTGTAA+GGG + chr1_4:17645105-17645124 None:intergenic 20.0%
!!! ATTTTAAGGGATTTATTTAG+TGG + chr1_4:17645233-17645252 None:intergenic 20.0%
!!! TGGTCCAATTTTTATTTTAA+GGG + chr1_4:17645246-17645265 None:intergenic 20.0%
!!! TTGGTCCAATTTTTATTTTA+AGG + chr1_4:17645247-17645266 None:intergenic 20.0%
!! TATGATAATTATCACAACAA+TGG + chr1_4:17645397-17645416 None:intergenic 20.0%
!! GAATTTATCATATGACATTA+TGG + chr1_4:17645499-17645518 None:intergenic 20.0%
!! TATAAGTCAAAGCAATTAAA+GGG + chr1_4:17645559-17645578 None:intergenic 20.0%
!! ATATAAGTCAAAGCAATTAA+AGG + chr1_4:17645560-17645579 None:intergenic 20.0%
!! TAAAATTATGGGGAAATATA+GGG + chr1_4:17645747-17645766 None:intergenic 20.0%
!! ATAAAATTATGGGGAAATAT+AGG + chr1_4:17645748-17645767 None:intergenic 20.0%
!! ACTCCATCATATAAAATTAT+GGG + chr1_4:17645758-17645777 None:intergenic 20.0%
!! TACTTTCTATCAGTTAAATT+TGG - chr1_4:17646042-17646061 Msa0153770:intron 20.0%
!!! TTTATTTTTTTTTCAGTTGG+AGG - chr1_4:17646455-17646474 Msa0153770:CDS 20.0%
!!! TTATTTTTTTTTCAGTTGGA+GGG - chr1_4:17646456-17646475 Msa0153770:CDS 20.0%
!! AGATTAATATTATCGTAGTA+AGG + chr1_4:17646787-17646806 None:intergenic 20.0%
!! ATGATATTACAAAGAAACAA+CGG + chr1_4:17646817-17646836 None:intergenic 20.0%
!! AAAAAAAAACTCTACCTTAA+AGG - chr1_4:17646916-17646935 Msa0153770:intron 20.0%
!! AGCTATAACAAGTAATATAT+GGG + chr1_4:17647183-17647202 None:intergenic 20.0%
!! AAGCTATAACAAGTAATATA+TGG + chr1_4:17647184-17647203 None:intergenic 20.0%
!!! TAGAAAATCATGTCTTTTTT+AGG + chr1_4:17647234-17647253 None:intergenic 20.0%
!! TACAAAACAGTTTCTATAAT+GGG + chr1_4:17647474-17647493 None:intergenic 20.0%
!! CATTTACTGTTTGAATAAAA+TGG - chr1_4:17647570-17647589 Msa0153770:intron 20.0%
!!! TTTTTGTCAAGAACTAAATT+GGG + chr1_4:17647787-17647806 None:intergenic 20.0%
!!! TTTTTTGTCAAGAACTAAAT+TGG + chr1_4:17647788-17647807 None:intergenic 20.0%
!! ACATCTATATAAAAATGTCA+AGG + chr1_4:17647826-17647845 None:intergenic 20.0%
!! ACTAATGTAAAAGTTAACAT+TGG - chr1_4:17647878-17647897 Msa0153770:intron 20.0%
!!! CAAAAAATCTAACAAGATTT+TGG + chr1_4:17648530-17648549 None:intergenic 20.0%
!!! CAAAATCTTGTTAGATTTTT+TGG - chr1_4:17648528-17648547 Msa0153770:intron 20.0%
! AAAGAAAAAGGATTGATAGA+TGG + chr1_4:17642505-17642524 None:intergenic 25.0%
!! TTAGGTTTTCCCAAAATTAA+AGG + chr1_4:17642630-17642649 None:intergenic 25.0%
!!! GTAGAGAATTTTTTGAGTAA+TGG - chr1_4:17642661-17642680 Msa0153770:CDS 25.0%
! CATCATGTTAATTCAATAGT+TGG - chr1_4:17642723-17642742 Msa0153770:CDS 25.0%
!! ATTGTGATTAAGGAGATTTT+AGG - chr1_4:17642760-17642779 Msa0153770:CDS 25.0%
!!! ATTAAGGAGATTTTAGGTTA+GGG - chr1_4:17642766-17642785 Msa0153770:CDS 25.0%
! ATTTATAACCACTGTTCTAT+TGG + chr1_4:17643387-17643406 None:intergenic 25.0%
! TTATAAATTAACGTGAGAGA+GGG - chr1_4:17643399-17643418 Msa0153770:intron 25.0%
!! AAGGGTTTTCAATAAATCAT+TGG - chr1_4:17643526-17643545 Msa0153770:intron 25.0%
!!! ATTTTTAGGATTGCAATTTC+TGG - chr1_4:17643629-17643648 Msa0153770:intron 25.0%
!!! TATTTGTTATATTATCGGTG+TGG + chr1_4:17643864-17643883 None:intergenic 25.0%
!! AATTTGTTTAAGGGCATAAT+CGG - chr1_4:17643939-17643958 Msa0153770:intron 25.0%
! AGAAGTTTCCTAAAACTATA+TGG - chr1_4:17644298-17644317 Msa0153770:intron 25.0%
! ATAGTTGTTTATTAAACTCG+GGG - chr1_4:17644469-17644488 Msa0153770:CDS 25.0%
! AACTGTGGAAAGAAAAAAAA+GGG + chr1_4:17644598-17644617 None:intergenic 25.0%
! AAACTGTGGAAAGAAAAAAA+AGG + chr1_4:17644599-17644618 None:intergenic 25.0%
! AATCAAAACAAAAAGAAACG+CGG - chr1_4:17644783-17644802 Msa0153770:intron 25.0%
! AGGAAAATCAAATCAAATTC+TGG + chr1_4:17644942-17644961 None:intergenic 25.0%
!!! AATTTGATTTGATTTTCCTC+TGG - chr1_4:17644943-17644962 Msa0153770:intron 25.0%
!!! ATTTGATTTGATTTTCCTCT+GGG - chr1_4:17644944-17644963 Msa0153770:intron 25.0%
! TGTATAAATTCAACCTCAAA+TGG + chr1_4:17645001-17645020 None:intergenic 25.0%
! GTTGTTAATATGTAATGCTT+TGG - chr1_4:17645058-17645077 Msa0153770:intron 25.0%
! TTCCCTTACAAATATATGTT+AGG - chr1_4:17645100-17645119 Msa0153770:intron 25.0%
! GATCCTAACATATATTTGTA+AGG + chr1_4:17645106-17645125 None:intergenic 25.0%
! AAATATATGTTAGGATCAGA+AGG - chr1_4:17645109-17645128 Msa0153770:intron 25.0%
! TATGCTATTGCATTGTATAT+GGG + chr1_4:17645300-17645319 None:intergenic 25.0%
! TTATGCTATTGCATTGTATA+TGG + chr1_4:17645301-17645320 None:intergenic 25.0%
!! TTCCCCATAATTTTATATGA+TGG - chr1_4:17645752-17645771 Msa0153770:intron 25.0%
! CTCCATCATATAAAATTATG+GGG + chr1_4:17645757-17645776 None:intergenic 25.0%
! CACTCCATCATATAAAATTA+TGG + chr1_4:17645759-17645778 None:intergenic 25.0%
! TTGTCTAAGTAAAAGTAAGA+CGG + chr1_4:17645883-17645902 None:intergenic 25.0%
!! GATTTTACACAAATAAAGTG+TGG - chr1_4:17646210-17646229 Msa0153770:intron 25.0%
!! ATGATGCAGTTTTTCATTTT+TGG + chr1_4:17646402-17646421 None:intergenic 25.0%
!!! TATTTTTTTTTCAGTTGGAG+GGG - chr1_4:17646457-17646476 Msa0153770:CDS 25.0%
! AACACCACCAAATATATTAT+GGG - chr1_4:17646607-17646626 Msa0153770:intron 25.0%
! ATATTATCGTAGTAAGGTAA+TGG + chr1_4:17646781-17646800 None:intergenic 25.0%
! GAACTTTGAATGTAATGATT+GGG - chr1_4:17647100-17647119 Msa0153770:intron 25.0%
!!! AATCATGTCTTTTTTAGGAA+GGG + chr1_4:17647229-17647248 None:intergenic 25.0%
!!! AAATCATGTCTTTTTTAGGA+AGG + chr1_4:17647230-17647249 None:intergenic 25.0%
!! ATTAAAGATTGTGCTGATAA+GGG - chr1_4:17647306-17647325 Msa0153770:intron 25.0%
!!! AATTAGCTAGAAGTATGTTT+TGG - chr1_4:17647355-17647374 Msa0153770:intron 25.0%
! CTACAAAACAGTTTCTATAA+TGG + chr1_4:17647475-17647494 None:intergenic 25.0%
!! TTTGAAATGTAATATGCTCA+TGG - chr1_4:17647519-17647538 Msa0153770:intron 25.0%
! ACACAAAAACTTCTTCAAAA+AGG + chr1_4:17647679-17647698 None:intergenic 25.0%
!!! CAATAGTTTTATCGAATGAA+AGG + chr1_4:17647927-17647946 None:intergenic 25.0%
!!! AAAATGGATACTTTTGTTTG+TGG - chr1_4:17648036-17648055 Msa0153770:intron 25.0%
!! TCATAGCTTTTGTAATTCTT+TGG - chr1_4:17648109-17648128 Msa0153770:intron 25.0%
!! AGCTCTCTTTTATATATCAA+GGG - chr1_4:17648445-17648464 Msa0153770:intron 25.0%
! TTTGAGAAAAATCTTGATAC+AGG + chr1_4:17648564-17648583 None:intergenic 25.0%
!! AGTGTTTGTGTCTTTTATAT+AGG - chr1_4:17648673-17648692 Msa0153770:intron 25.0%
!! CAAGTATATATATTTTGTGG+TGG + chr1_4:17648723-17648742 None:intergenic 25.0%
!! ATTTTGGGAAAACCTAAGTT+AGG - chr1_4:17642633-17642652 Msa0153770:CDS 30.0%
! TCTCTACATTTTCCTAACTT+AGG + chr1_4:17642648-17642667 None:intergenic 30.0%
!!! GATTAAGGAGATTTTAGGTT+AGG - chr1_4:17642765-17642784 Msa0153770:CDS 30.0%
TATGTTAGTTACGTTGAGAA+CGG + chr1_4:17642827-17642846 None:intergenic 30.0%
!!! AGTGTCTTTATTTTCTGTTC+TGG + chr1_4:17643211-17643230 None:intergenic 30.0%
GAAGAGTTCATAGTAGAATT+GGG - chr1_4:17643313-17643332 Msa0153770:intron 30.0%
AGAAAAAACCAATAGAACAG+TGG - chr1_4:17643376-17643395 Msa0153770:intron 30.0%
GTTATAAATTAACGTGAGAG+AGG - chr1_4:17643398-17643417 Msa0153770:intron 30.0%
CTAAATTTACCCATAAACTG+TGG + chr1_4:17643473-17643492 None:intergenic 30.0%
!! TGCTTAGTTTGTTATTGTGA+AGG - chr1_4:17643507-17643526 Msa0153770:intron 30.0%
!! GCTTAGTTTGTTATTGTGAA+GGG - chr1_4:17643508-17643527 Msa0153770:intron 30.0%
! ATGAACTGTTTCAGAGTTTT+AGG - chr1_4:17643565-17643584 Msa0153770:intron 30.0%
!! TGTTAGCCTACGTATTTTTA+GGG - chr1_4:17643588-17643607 Msa0153770:intron 30.0%
!!! CTACGTATTTTTAGGGTTTT+GGG - chr1_4:17643595-17643614 Msa0153770:intron 30.0%
! GGGAGGCTAAATATATTTTT+AGG - chr1_4:17643615-17643634 Msa0153770:intron 30.0%
! ATTGGGTTAGAATTGAATTC+TGG + chr1_4:17643719-17643738 None:intergenic 30.0%
TTGCAAAATCATTTGATCCT+AGG - chr1_4:17643764-17643783 Msa0153770:intron 30.0%
TGTGGTTGAAAAAGATAACA+TGG + chr1_4:17643846-17643865 None:intergenic 30.0%
! ATTATAGATGATGATGCTGA+TGG - chr1_4:17644015-17644034 Msa0153770:intron 30.0%
! GTGAAAGACAAGTTTTTCTT+TGG - chr1_4:17644133-17644152 Msa0153770:intron 30.0%
TTTCATAGCCTAAAAGACAA+TGG - chr1_4:17644205-17644224 Msa0153770:intron 30.0%
AGTTGTATGGAGAAAGTAAT+TGG + chr1_4:17644263-17644282 None:intergenic 30.0%
GAAGCAATATGAAAGTTGTA+TGG + chr1_4:17644276-17644295 None:intergenic 30.0%
GCTAGTAGAAGAATTATAGA+AGG + chr1_4:17644523-17644542 None:intergenic 30.0%
! GCTACATAATTTTCAAACTG+TGG + chr1_4:17644613-17644632 None:intergenic 30.0%
TGAAAATTATGTAGCTTCCT+TGG - chr1_4:17644618-17644637 Msa0153770:CDS 30.0%
TTGCTCTTGTAATCACATAT+AGG - chr1_4:17644641-17644660 Msa0153770:CDS 30.0%
AATCACATATAGGAGCAATA+TGG - chr1_4:17644651-17644670 Msa0153770:CDS 30.0%
AATCAAATTCTGGTCAACAA+GGG + chr1_4:17644932-17644951 None:intergenic 30.0%
AAATCAAATTCTGGTCAACA+AGG + chr1_4:17644933-17644952 None:intergenic 30.0%
AATTCAACCTCAAATGGAAA+CGG + chr1_4:17644995-17645014 None:intergenic 30.0%
AAATTCAAATTGGGAGTTGA+TGG - chr1_4:17645021-17645040 Msa0153770:intron 30.0%
TACCTCACAATCTCATTATT+TGG - chr1_4:17645603-17645622 Msa0153770:intron 30.0%
TTATGAAACCTAAGTCAAGT+TGG + chr1_4:17645857-17645876 None:intergenic 30.0%
! TGTTTCTAAAGGGTTCTTAT+GGG + chr1_4:17645980-17645999 None:intergenic 30.0%
! ATGTTTCTAAAGGGTTCTTA+TGG + chr1_4:17645981-17646000 None:intergenic 30.0%
TACACAAATAAAGTGTGGAT+TGG - chr1_4:17646215-17646234 Msa0153770:intron 30.0%
! AAAAAAGGAAAGTGTAGCTA+TGG + chr1_4:17646561-17646580 None:intergenic 30.0%
GAACACCACCAAATATATTA+TGG - chr1_4:17646606-17646625 Msa0153770:intron 30.0%
ACACCACCAAATATATTATG+GGG - chr1_4:17646608-17646627 Msa0153770:intron 30.0%
TAGCTTCCCCATAATATATT+TGG + chr1_4:17646617-17646636 None:intergenic 30.0%
! GACAGAATGTATAATTTTCG+AGG + chr1_4:17646661-17646680 None:intergenic 30.0%
!! AGGTAATGGAAACTTACAAA+TGG + chr1_4:17646767-17646786 None:intergenic 30.0%
!!! TTTTTTTTTGAGGGGATTTC+AGG + chr1_4:17646888-17646907 None:intergenic 30.0%
TTACTTAGGAAGTTCCTTTA+AGG + chr1_4:17646933-17646952 None:intergenic 30.0%
!! AGGGTATTGTGTTATAGTTA+TGG - chr1_4:17647031-17647050 Msa0153770:intron 30.0%
! GGGTATTGTGTTATAGTTAT+GGG - chr1_4:17647032-17647051 Msa0153770:intron 30.0%
GGTATTGTGTTATAGTTATG+GGG - chr1_4:17647033-17647052 Msa0153770:intron 30.0%
CGAACTTTGAATGTAATGAT+TGG - chr1_4:17647099-17647118 Msa0153770:intron 30.0%
TAATATATGGGAAAACCATG+AGG + chr1_4:17647171-17647190 None:intergenic 30.0%
! GATTAAAGATTGTGCTGATA+AGG - chr1_4:17647305-17647324 Msa0153770:intron 30.0%
! TTAAAGATTGTGCTGATAAG+GGG - chr1_4:17647307-17647326 Msa0153770:intron 30.0%
GCTAATTAAATTATCCTTCC+AGG + chr1_4:17647342-17647361 None:intergenic 30.0%
!!! ATGCTGTTTCAGTTTTGAAA+TGG - chr1_4:17647699-17647718 Msa0153770:intron 30.0%
!! GGTTTTTAAGGGTACATAAA+AGG + chr1_4:17647735-17647754 None:intergenic 30.0%
!!! AAATTTTGAGGCACCAAAAT+GGG + chr1_4:17647756-17647775 None:intergenic 30.0%
!!! AAAATTTTGAGGCACCAAAA+TGG + chr1_4:17647757-17647776 None:intergenic 30.0%
ACCTATGAACTGTGTTAAAA+TGG - chr1_4:17648020-17648039 Msa0153770:intron 30.0%
!! TCCATTTTAACACAGTTCAT+AGG + chr1_4:17648024-17648043 None:intergenic 30.0%
TTTGTAATTCTTTGGCAGAT+TGG - chr1_4:17648117-17648136 Msa0153770:intron 30.0%
TATATGCTAGCATGCATATT+TGG - chr1_4:17648229-17648248 Msa0153770:intron 30.0%
! TAGGATTGAGTGTTCTTTTA+TGG - chr1_4:17648418-17648437 Msa0153770:intron 30.0%
! CAGCTCTCTTTTATATATCA+AGG - chr1_4:17648444-17648463 Msa0153770:intron 30.0%
ATACATAAGATGAATCTGTC+AGG - chr1_4:17648610-17648629 Msa0153770:intron 30.0%
!!! GGTCTTCTCTGAAATTTTTT+TGG + chr1_4:17648702-17648721 None:intergenic 30.0%
!! GAAATTGAGAGTGTCGATTT+CGG + chr1_4:17642447-17642466 None:intergenic 35.0%
! TAGAGTGATAAGTAGGTTGA+GGG - chr1_4:17642791-17642810 Msa0153770:CDS 35.0%
!!! GTCTTTATTTTCTGTTCTGG+CGG + chr1_4:17643208-17643227 None:intergenic 35.0%
AACTGAAGTCATTGATGTGA+TGG - chr1_4:17643250-17643269 Msa0153770:intron 35.0%
GGAAGAGTTCATAGTAGAAT+TGG - chr1_4:17643312-17643331 Msa0153770:intron 35.0%
!! GTGTTAGCCTACGTATTTTT+AGG - chr1_4:17643587-17643606 Msa0153770:intron 35.0%
CCAAAACCCTAAAAATACGT+AGG + chr1_4:17643597-17643616 None:intergenic 35.0%
!!! CCTACGTATTTTTAGGGTTT+TGG - chr1_4:17643594-17643613 Msa0153770:intron 35.0%
!!! ACCGTTTCTGTGTTTTTTCA+TGG - chr1_4:17643675-17643694 Msa0153770:intron 35.0%
GCCATGAAAAAACACAGAAA+CGG + chr1_4:17643679-17643698 None:intergenic 35.0%
GGTTAGAATTGAATTCTGGT+TGG + chr1_4:17643715-17643734 None:intergenic 35.0%
CTACTTTGTGTGCTTGAATT+GGG + chr1_4:17643736-17643755 None:intergenic 35.0%
ACTACTTTGTGTGCTTGAAT+TGG + chr1_4:17643737-17643756 None:intergenic 35.0%
!! GGTTTGTTACCATTTGAAAG+TGG + chr1_4:17643825-17643844 None:intergenic 35.0%
TAACAATATGTAAAGGGGAC+AGG + chr1_4:17643992-17644011 None:intergenic 35.0%
TATACCTTGTGTGTATCAGT+TGG - chr1_4:17644100-17644119 Msa0153770:intron 35.0%
TAATCCAACTGATACACACA+AGG + chr1_4:17644107-17644126 None:intergenic 35.0%
! CTAACATGCCATTGTCTTTT+AGG + chr1_4:17644216-17644235 None:intergenic 35.0%
! GGAGAAAGTAATTGGTGTTT+GGG + chr1_4:17644255-17644274 None:intergenic 35.0%
! TGGAGAAAGTAATTGGTGTT+TGG + chr1_4:17644256-17644275 None:intergenic 35.0%
TTCCTAAAACTATATGGACG+AGG - chr1_4:17644304-17644323 Msa0153770:intron 35.0%
TACGGTGTACTCTTCATTTA+GGG + chr1_4:17644392-17644411 None:intergenic 35.0%
ATACGGTGTACTCTTCATTT+AGG + chr1_4:17644393-17644412 None:intergenic 35.0%
ATAATTATGAGACAACCTGC+TGG - chr1_4:17644688-17644707 Msa0153770:intron 35.0%
TAATTATGAGACAACCTGCT+GGG - chr1_4:17644689-17644708 Msa0153770:intron 35.0%
ACATTTGAATATGGATGCAC+CGG + chr1_4:17644742-17644761 None:intergenic 35.0%
CATCCATATTCAAATGTGGT+TGG - chr1_4:17644745-17644764 Msa0153770:intron 35.0%
ACACCAACCACATTTGAATA+TGG + chr1_4:17644751-17644770 None:intergenic 35.0%
! ATATTCAAATGTGGTTGGTG+TGG - chr1_4:17644750-17644769 Msa0153770:intron 35.0%
GGGTGACAACAAATAAAAGT+AGG + chr1_4:17644912-17644931 None:intergenic 35.0%
ATTCAACCTCAAATGGAAAC+GGG + chr1_4:17644994-17645013 None:intergenic 35.0%
TTCATGGCTTCTTTAAGTGT+TGG + chr1_4:17645266-17645285 None:intergenic 35.0%
ATGGGATAAAGTGATCTTCA+TGG + chr1_4:17645282-17645301 None:intergenic 35.0%
ATAATGAGATTGTGAGGTAG+AGG + chr1_4:17645602-17645621 None:intergenic 35.0%
AGCCAAATAATGAGATTGTG+AGG + chr1_4:17645608-17645627 None:intergenic 35.0%
AATAAGAAACCCTAGTGAGA+AGG + chr1_4:17645633-17645652 None:intergenic 35.0%
TGTGATAAAGTTTGCCTTTG+AGG - chr1_4:17645668-17645687 Msa0153770:intron 35.0%
GTGATAAAGTTTGCCTTTGA+GGG - chr1_4:17645669-17645688 Msa0153770:intron 35.0%
! GCATACTAATTCTAGCTAAG+AGG + chr1_4:17645832-17645851 None:intergenic 35.0%
! GTTTCTAAAGGGTTCTTATG+GGG + chr1_4:17645979-17645998 None:intergenic 35.0%
! ACCATGCTCATGTTTCTAAA+GGG + chr1_4:17645990-17646009 None:intergenic 35.0%
GACATCATAATCCATCACTT+AGG - chr1_4:17646064-17646083 Msa0153770:intron 35.0%
TCATAATCCATCACTTAGGT+TGG - chr1_4:17646068-17646087 Msa0153770:intron 35.0%
AATACTACCAACCTAAGTGA+TGG + chr1_4:17646078-17646097 None:intergenic 35.0%
! TTGTCAAGTCTCTTTTCTTG+CGG - chr1_4:17646111-17646130 Msa0153770:intron 35.0%
! ATTCAGTGTTCTTGCTATCA+TGG - chr1_4:17646343-17646362 Msa0153770:CDS 35.0%
! TCTTCTCTGTCAGTCTTTTA+TGG - chr1_4:17646501-17646520 Msa0153770:intron 35.0%
! CTTCTCTGTCAGTCTTTTAT+GGG - chr1_4:17646502-17646521 Msa0153770:intron 35.0%
! TTCTCTGTCAGTCTTTTATG+GGG - chr1_4:17646503-17646522 Msa0153770:intron 35.0%
AAATGCTGCAAGGCTAAAAA+AGG + chr1_4:17646576-17646595 None:intergenic 35.0%
!!! TTTTTAGCCTTGCAGCATTT+AGG - chr1_4:17646576-17646595 Msa0153770:intron 35.0%
CTTCCCCATAATATATTTGG+TGG + chr1_4:17646614-17646633 None:intergenic 35.0%
TTCATGCGGAAAATGTATAC+TGG - chr1_4:17646724-17646743 Msa0153770:intron 35.0%
CAGCTAAGACAATCTTACTT+AGG + chr1_4:17646947-17646966 None:intergenic 35.0%
GTGTTATAGTTATGGGGTTA+TGG - chr1_4:17647039-17647058 Msa0153770:intron 35.0%
TTATGGGGTTATGGTTCTTA+AGG - chr1_4:17647048-17647067 Msa0153770:intron 35.0%
TATGGGGTTATGGTTCTTAA+GGG - chr1_4:17647049-17647068 Msa0153770:intron 35.0%
AGCTTCTGTTATTCTTGTCT+AGG - chr1_4:17647145-17647164 Msa0153770:intron 35.0%
! AGACATGATTTTCTATACCG+AGG - chr1_4:17647239-17647258 Msa0153770:intron 35.0%
AACTTCTTCAAAAAGGTTCC+AGG + chr1_4:17647672-17647691 None:intergenic 35.0%
! GTACCCTTAAAAACCCATTT+TGG - chr1_4:17647740-17647759 Msa0153770:intron 35.0%
!! GCACCAAAATGGGTTTTTAA+GGG + chr1_4:17647746-17647765 None:intergenic 35.0%
TCCCTGACTCATTATAAAAG+AGG - chr1_4:17647854-17647873 Msa0153770:intron 35.0%
! CCCTCTTTTATAATGAGTCA+GGG + chr1_4:17647858-17647877 None:intergenic 35.0%
CCCTGACTCATTATAAAAGA+GGG - chr1_4:17647855-17647874 Msa0153770:intron 35.0%
! TCCCTCTTTTATAATGAGTC+AGG + chr1_4:17647859-17647878 None:intergenic 35.0%
TGATTGCAACTATGAAGTCA+AGG + chr1_4:17647998-17648017 None:intergenic 35.0%
!! GATACTTTTGTTTGTGGCTA+TGG - chr1_4:17648042-17648061 Msa0153770:intron 35.0%
TGAACAAACTAACCAAGACA+GGG + chr1_4:17648092-17648111 None:intergenic 35.0%
ATGAACAAACTAACCAAGAC+AGG + chr1_4:17648093-17648112 None:intergenic 35.0%
AACACTCGCGATAAAAAGAT+AGG + chr1_4:17648388-17648407 None:intergenic 35.0%
ATCGACACTCTCAATTTCCA+TGG - chr1_4:17642449-17642468 Msa0153770:three_prime_UTR 40.0%
TAGGGAGTAGAGTGATAAGT+AGG - chr1_4:17642784-17642803 Msa0153770:CDS 40.0%
GTAGAGTGATAAGTAGGTTG+AGG - chr1_4:17642790-17642809 Msa0153770:CDS 40.0%
TCGAGATCCTAGGTAAAATC+AGG - chr1_4:17642994-17643013 Msa0153770:CDS 40.0%
CGAGATCCTAGGTAAAATCA+GGG - chr1_4:17642995-17643014 Msa0153770:CDS 40.0%
ATCCTAGGTAAAATCAGGGA+GGG - chr1_4:17642999-17643018 Msa0153770:CDS 40.0%
TGCAGATTGCACAGAACAAA+GGG - chr1_4:17643291-17643310 Msa0153770:intron 40.0%
GAGTTCATAGTAGAATTGGG+TGG - chr1_4:17643316-17643335 Msa0153770:intron 40.0%
TTGAGTAGTGCTACGAATCT+GGG - chr1_4:17643424-17643443 Msa0153770:intron 40.0%
! ATCTGGGTGAATTGTTGCTT+TGG - chr1_4:17643440-17643459 Msa0153770:intron 40.0%
!! GGTGAATTGTTGCTTTGGTA+AGG - chr1_4:17643445-17643464 Msa0153770:intron 40.0%
!!! CGTATTTTTAGGGTTTTGGG+AGG - chr1_4:17643598-17643617 Msa0153770:intron 40.0%
AATCATTTGATCCTAGGAGC+AGG - chr1_4:17643770-17643789 Msa0153770:intron 40.0%
!!! GATTGCGATTTTGACTACCT+TGG - chr1_4:17643792-17643811 Msa0153770:intron 40.0%
TTGAAAGTGGCAAACATCCA+AGG + chr1_4:17643812-17643831 None:intergenic 40.0%
!! GGATGTTTGCCACTTTCAAA+TGG - chr1_4:17643813-17643832 Msa0153770:intron 40.0%
TTTCTTTGGCATCATTGTGC+CGG - chr1_4:17644147-17644166 Msa0153770:intron 40.0%
AGGCTATGAAACACTAACAC+AGG + chr1_4:17644196-17644215 None:intergenic 40.0%
! GAAAGTAATTGGTGTTTGGG+TGG + chr1_4:17644252-17644271 None:intergenic 40.0%
! CTCCTCGTCCATATAGTTTT+AGG + chr1_4:17644309-17644328 None:intergenic 40.0%
ACGGTGTACTCTTCATTTAG+GGG + chr1_4:17644391-17644410 None:intergenic 40.0%
ACAGCCATGAAGTAATGACT+GGG + chr1_4:17644566-17644585 None:intergenic 40.0%
AACAGCCATGAAGTAATGAC+TGG + chr1_4:17644567-17644586 None:intergenic 40.0%
TGTGATTACAAGAGCAACCA+AGG + chr1_4:17644638-17644657 None:intergenic 40.0%
ATAGGAGCAATATGGAACTG+AGG - chr1_4:17644659-17644678 Msa0153770:CDS 40.0%
TAGGAGCAATATGGAACTGA+GGG - chr1_4:17644660-17644679 Msa0153770:CDS 40.0%
AATTATGAGACAACCTGCTG+GGG - chr1_4:17644690-17644709 Msa0153770:intron 40.0%
GGTGCATCCATATTCAAATG+TGG - chr1_4:17644741-17644760 Msa0153770:intron 40.0%
!!! TTTGATTTTCCTCTGGGACT+AGG - chr1_4:17644950-17644969 Msa0153770:intron 40.0%
TTCAACCTCAAATGGAAACG+GGG + chr1_4:17644993-17645012 None:intergenic 40.0%
TGCTTTGGTCATAGCAGTTT+AGG - chr1_4:17645073-17645092 Msa0153770:intron 40.0%
AACATAATCCCTTTCCCACT+AGG - chr1_4:17645444-17645463 Msa0153770:intron 40.0%
! ATTGTGAGGTAGAGGTATAG+GGG + chr1_4:17645594-17645613 None:intergenic 40.0%
! GATTGTGAGGTAGAGGTATA+GGG + chr1_4:17645595-17645614 None:intergenic 40.0%
! AGATTGTGAGGTAGAGGTAT+AGG + chr1_4:17645596-17645615 None:intergenic 40.0%
ATTTGGCTATCCTTCTCACT+AGG - chr1_4:17645620-17645639 Msa0153770:intron 40.0%
TTTGGCTATCCTTCTCACTA+GGG - chr1_4:17645621-17645640 Msa0153770:intron 40.0%
AGAGGCAAACATAGGATTCA+CGG + chr1_4:17645724-17645743 None:intergenic 40.0%
ATATAGGGAGAGGCAAACAT+AGG + chr1_4:17645732-17645751 None:intergenic 40.0%
TTATGGGGAAATATAGGGAG+AGG + chr1_4:17645742-17645761 None:intergenic 40.0%
TACTTAAACAACGAGACTCG+TGG - chr1_4:17645783-17645802 Msa0153770:intron 40.0%
TCTAGCTAAGAGGTGAAAAC+TGG + chr1_4:17645822-17645841 None:intergenic 40.0%
GTATGCTTCCAACTTGACTT+AGG - chr1_4:17645846-17645865 Msa0153770:intron 40.0%
GAGATAAGCTTCGAAAACAC+AGG + chr1_4:17645909-17645928 None:intergenic 40.0%
TGCTGAATGTCATCCTCTTT+AGG - chr1_4:17645943-17645962 Msa0153770:intron 40.0%
! ACCCTTTAGAAACATGAGCA+TGG - chr1_4:17645986-17646005 Msa0153770:intron 40.0%
! GACCATGCTCATGTTTCTAA+AGG + chr1_4:17645991-17646010 None:intergenic 40.0%
TGTGATTCAAAACACGAGCA+TGG - chr1_4:17646174-17646193 Msa0153770:intron 40.0%
!! GTGGATTGGCTATGAAAAGA+TGG - chr1_4:17646229-17646248 Msa0153770:intron 40.0%
TGATGAGCATCAATTACAGC+AGG + chr1_4:17646277-17646296 None:intergenic 40.0%
TGCTGTAATTGATGCTCATC+AGG - chr1_4:17646276-17646295 Msa0153770:intron 40.0%
GACTGACAGAGAAGACTATA+GGG + chr1_4:17646496-17646515 None:intergenic 40.0%
AGACTGACAGAGAAGACTAT+AGG + chr1_4:17646497-17646516 None:intergenic 40.0%
CGGAAAATGTATACTGGACA+TGG - chr1_4:17646730-17646749 Msa0153770:intron 40.0%
TGCTAATGCAGAAGAACTTC+AGG - chr1_4:17647011-17647030 Msa0153770:intron 40.0%
GCTAATGCAGAAGAACTTCA+GGG - chr1_4:17647012-17647031 Msa0153770:intron 40.0%
ATGGGGTTATGGTTCTTAAG+GGG - chr1_4:17647050-17647069 Msa0153770:intron 40.0%
TTATTCTTGTCTAGGCCTCA+TGG - chr1_4:17647153-17647172 Msa0153770:intron 40.0%
GACAGATGATACAAGAGAAC+AGG + chr1_4:17647207-17647226 None:intergenic 40.0%
!! ACCGAGGTTTTATGTTGAAC+TGG - chr1_4:17647255-17647274 Msa0153770:intron 40.0%
GCCAGTTCAACATAAAACCT+CGG + chr1_4:17647259-17647278 None:intergenic 40.0%
TTAGTTAGATGCACTCCCAT+TGG - chr1_4:17647387-17647406 Msa0153770:intron 40.0%
AAACCACAGGAAATGGTTTG+AGG + chr1_4:17647648-17647667 None:intergenic 40.0%
!! GGCACCAAAATGGGTTTTTA+AGG + chr1_4:17647747-17647766 None:intergenic 40.0%
CTTCGTTTGCTTCCTCATTT+CGG - chr1_4:17648170-17648189 Msa0153770:intron 40.0%
AAACAGCGTAGATCTCAAGA+AGG + chr1_4:17648340-17648359 None:intergenic 40.0%
!! CTGTCAGGTTTTGTAGTCAA+TGG - chr1_4:17648625-17648644 Msa0153770:intron 40.0%
AGGAGAAGAAGAAGAAGCCA+TGG + chr1_4:17642469-17642488 None:intergenic 45.0%
TTCTTCTTCTTCTCCTCACG+AGG - chr1_4:17642473-17642492 Msa0153770:three_prime_UTR 45.0%
TAGATGGAACAAACCTCGTG+AGG + chr1_4:17642489-17642508 None:intergenic 45.0%
GATCCTAGGTAAAATCAGGG+AGG - chr1_4:17642998-17643017 Msa0153770:CDS 45.0%
TCCTAGGTAAAATCAGGGAG+GGG - chr1_4:17643000-17643019 Msa0153770:CDS 45.0%
GTGCAGATTGCACAGAACAA+AGG - chr1_4:17643290-17643309 Msa0153770:intron 45.0%
GTTGAGTAGTGCTACGAATC+TGG - chr1_4:17643423-17643442 Msa0153770:intron 45.0%
TGGTAAGGCTCCACAGTTTA+TGG - chr1_4:17643460-17643479 Msa0153770:intron 45.0%
GGTAAGGCTCCACAGTTTAT+GGG - chr1_4:17643461-17643480 Msa0153770:intron 45.0%
AAAATCGCAATCCTGCTCCT+AGG + chr1_4:17643784-17643803 None:intergenic 45.0%
! GTAAAGGGGACAGGAGATTT+TGG + chr1_4:17643983-17644002 None:intergenic 45.0%
CAGCCATGAAGTAATGACTG+GGG + chr1_4:17644565-17644584 None:intergenic 45.0%
TTGAATATGGATGCACCGGA+TGG + chr1_4:17644738-17644757 None:intergenic 45.0%
AAAATGAGACCTAGTCCCAG+AGG + chr1_4:17644962-17644981 None:intergenic 45.0%
GTTTACCCCGTTTCCATTTG+AGG - chr1_4:17644985-17645004 Msa0153770:intron 45.0%
!! CAAATTGGGAGTTGATGGAG+TGG - chr1_4:17645026-17645045 Msa0153770:intron 45.0%
TAACCTCACCTAGTGGGAAA+GGG + chr1_4:17645455-17645474 None:intergenic 45.0%
TTAACCTCACCTAGTGGGAA+AGG + chr1_4:17645456-17645475 None:intergenic 45.0%
GTAGCTTAACCTCACCTAGT+GGG + chr1_4:17645461-17645480 None:intergenic 45.0%
TGTAGCTTAACCTCACCTAG+TGG + chr1_4:17645462-17645481 None:intergenic 45.0%
AATACTTCGAGCACCCTCAA+AGG + chr1_4:17645685-17645704 None:intergenic 45.0%
GAGGCAAACATAGGATTCAC+GGG + chr1_4:17645723-17645742 None:intergenic 45.0%
AAACAACGAGACTCGTGGTA+CGG - chr1_4:17645788-17645807 Msa0153770:intron 45.0%
ATTCAGCAGCACTAGAGCTA+TGG + chr1_4:17645931-17645950 None:intergenic 45.0%
TCTTGCGGCTCATAGAATTG+AGG - chr1_4:17646126-17646145 Msa0153770:intron 45.0%
CGAGCATGGTCATTACTTTG+TGG - chr1_4:17646188-17646207 Msa0153770:intron 45.0%
!!! TTTTTTCAGTTGGAGGGGTG+TGG - chr1_4:17646462-17646481 Msa0153770:CDS 45.0%
!! TTTTTCAGTTGGAGGGGTGT+GGG - chr1_4:17646463-17646482 Msa0153770:CDS 45.0%
! TGATGTGCTCTAGGTGACTT+TGG + chr1_4:17646698-17646717 None:intergenic 45.0%
GAACGACAATGATGTGCTCT+AGG + chr1_4:17646707-17646726 None:intergenic 45.0%
GCACATCATTGTCGTTCATG+CGG - chr1_4:17646710-17646729 Msa0153770:intron 45.0%
ATGGTTCTTAAGGGGCTCAA+AGG - chr1_4:17647058-17647077 Msa0153770:intron 45.0%
! AGATTGTGCTGATAAGGGGA+TGG - chr1_4:17647311-17647330 Msa0153770:intron 45.0%
GAGTGCATCTAACTAAGCAC+TGG + chr1_4:17647383-17647402 None:intergenic 45.0%
AAGCCTCAAACCATTTCCTG+TGG - chr1_4:17647642-17647661 Msa0153770:intron 45.0%
! ACCATTTCCTGTGGTTTTCC+TGG - chr1_4:17647651-17647670 Msa0153770:intron 45.0%
TCCAGGAAAACCACAGGAAA+TGG + chr1_4:17647655-17647674 None:intergenic 45.0%
AAAGGTTCCAGGAAAACCAC+AGG + chr1_4:17647661-17647680 None:intergenic 45.0%
! GGTGCCTCAAAATTTTCTCG+CGG - chr1_4:17647761-17647780 Msa0153770:intron 45.0%
! GTTTCTAACTTGCCCTGTCT+TGG - chr1_4:17648077-17648096 Msa0153770:intron 45.0%
TAAGTCTCCATGCTAGATCC+CGG + chr1_4:17648299-17648318 None:intergenic 45.0%
!! ACGCTGTTTCTATCGTCTAG+AGG - chr1_4:17648351-17648370 Msa0153770:intron 45.0%
GCGAGTGTTTCATTGCAGAT+AGG - chr1_4:17648399-17648418 Msa0153770:intron 45.0%
! ACTTCCGTGTTACTCAGAAG+AGG - chr1_4:17648583-17648602 Msa0153770:intron 45.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + chr1_4:17646897-17646916 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + chr1_4:17646898-17646917 None:intergenic 5.0%
ACGCGTGTGTGTGTTTACCT+GGG + chr1_4:17642402-17642421 None:intergenic 50.0%
AACGCGTGTGTGTGTTTACC+TGG + chr1_4:17642403-17642422 None:intergenic 50.0%
GTAGTCAGACTCGAGATCCT+AGG - chr1_4:17642984-17643003 Msa0153770:CDS 50.0%
! ACCCCTCCCTGATTTTACCT+AGG + chr1_4:17643004-17643023 None:intergenic 50.0%
TCTAGATCCTGGTCCTGAAC+CGG - chr1_4:17643025-17643044 Msa0153770:intron 50.0%
ACTGCACACGACACTAACAC+CGG + chr1_4:17644169-17644188 None:intergenic 50.0%
TGAAGTAATGACTGGGGCTG+AGG + chr1_4:17644559-17644578 None:intergenic 50.0%
CAGCCCCAGTCATTACTTCA+TGG - chr1_4:17644559-17644578 Msa0153770:CDS 50.0%
CTTCGCGTTATGCTTCCATC+CGG - chr1_4:17644720-17644739 Msa0153770:intron 50.0%
!! AAACGCGGCCAAAAGTGCTT+CGG - chr1_4:17644798-17644817 Msa0153770:intron 50.0%
AATCCCTTTCCCACTAGGTG+AGG - chr1_4:17645449-17645468 Msa0153770:intron 50.0%
! GTAGAGGTATAGGGGTAGCA+GGG + chr1_4:17645586-17645605 None:intergenic 50.0%
GGGTTGCAGAACACCTAAAG+AGG + chr1_4:17645959-17645978 None:intergenic 50.0%
CAGCACACCTAAATGCTGCA+AGG + chr1_4:17646586-17646605 None:intergenic 50.0%
CTTGCAGCATTTAGGTGTGC+TGG - chr1_4:17646584-17646603 Msa0153770:intron 50.0%
ATTATGGGGAAGCTACCCCA+CGG - chr1_4:17646622-17646641 Msa0153770:intron 50.0%
GATAAGGGGATGGAGATACC+TGG - chr1_4:17647321-17647340 Msa0153770:intron 50.0%
TTAGATGCACTCCCATTGGC+AGG - chr1_4:17647391-17647410 Msa0153770:intron 50.0%
TAGATGCACTCCCATTGGCA+GGG - chr1_4:17647392-17647411 Msa0153770:intron 50.0%
! TGGGCCGCGAGAAAATTTTG+AGG + chr1_4:17647768-17647787 None:intergenic 50.0%
TTGGCAGATTGGCAACTGTG+TGG - chr1_4:17648128-17648147 Msa0153770:intron 50.0%
TGGCAGATTGGCAACTGTGT+GGG - chr1_4:17648129-17648148 Msa0153770:intron 50.0%
CCACCATTGTCATACTCCCT+CGG - chr1_4:17648252-17648271 Msa0153770:intron 50.0%
ATACTCCCTCGGACGCTTAA+AGG - chr1_4:17648263-17648282 Msa0153770:intron 50.0%
TACTCCCTCGGACGCTTAAA+GGG - chr1_4:17648264-17648283 Msa0153770:intron 50.0%
CATACCCTTTAAGCGTCCGA+GGG + chr1_4:17648271-17648290 None:intergenic 50.0%
TCATACCCTTTAAGCGTCCG+AGG + chr1_4:17648272-17648291 None:intergenic 50.0%
! GGACGCTTAAAGGGTATGAC+TGG - chr1_4:17648273-17648292 Msa0153770:intron 50.0%
! GCTTAAAGGGTATGACTGGC+CGG - chr1_4:17648277-17648296 Msa0153770:intron 50.0%
! CTTAAAGGGTATGACTGGCC+GGG - chr1_4:17648278-17648297 Msa0153770:intron 50.0%
CGTGCCTCTTCTGAGTAACA+CGG + chr1_4:17648590-17648609 None:intergenic 50.0%
CTAGATCCTGGTCCTGAACC+GGG - chr1_4:17643026-17643045 Msa0153770:intron 55.0%
TAGATCCTGGTCCTGAACCG+GGG - chr1_4:17643027-17643046 Msa0153770:intron 55.0%
TGAACCGGGGGACTGTTACA+CGG - chr1_4:17643040-17643059 Msa0153770:intron 55.0%
CAATCCGTGTAACAGTCCCC+CGG + chr1_4:17643047-17643066 None:intergenic 55.0%
TCTGTTCTGGCGGCTGCATT+GGG + chr1_4:17643198-17643217 None:intergenic 55.0%
TTCTGTTCTGGCGGCTGCAT+TGG + chr1_4:17643199-17643218 None:intergenic 55.0%
!! AACGCGGCCAAAAGTGCTTC+GGG - chr1_4:17644799-17644818 Msa0153770:intron 55.0%
!! CTCTCCACCCGAAGCACTTT+TGG + chr1_4:17644809-17644828 None:intergenic 55.0%
! GGTAGAGGTATAGGGGTAGC+AGG + chr1_4:17645587-17645606 None:intergenic 55.0%
AGGGGATGGAGATACCTGGA+AGG - chr1_4:17647325-17647344 Msa0153770:intron 55.0%
TTCACCAGAGCCCTGCCAAT+GGG + chr1_4:17647405-17647424 None:intergenic 55.0%
ATTCACCAGAGCCCTGCCAA+TGG + chr1_4:17647406-17647425 None:intergenic 55.0%
TGCTCAGCACTGCCGAAATG+AGG + chr1_4:17648185-17648204 None:intergenic 55.0%
! CCGAGGGAGTATGACAATGG+TGG + chr1_4:17648255-17648274 None:intergenic 55.0%
! CGTCCGAGGGAGTATGACAA+TGG + chr1_4:17648258-17648277 None:intergenic 55.0%
AGGGAGGGGTCTCTAGATCC+TGG - chr1_4:17643014-17643033 Msa0153770:CDS 60.0%
AGATCCTGGTCCTGAACCGG+GGG - chr1_4:17643028-17643047 Msa0153770:intron 60.0%
GTGTAACAGTCCCCCGGTTC+AGG + chr1_4:17643041-17643060 None:intergenic 60.0%
CGGGGGACTGTTACACGGAT+TGG - chr1_4:17643045-17643064 Msa0153770:intron 60.0%
CTGTTCTGGCGGCTGCATTG+GGG + chr1_4:17643197-17643216 None:intergenic 60.0%
GAGACAACCTGCTGGGGTTG+TGG - chr1_4:17644696-17644715 Msa0153770:intron 60.0%
AGGTCACCTTGCCCTACCGT+GGG + chr1_4:17646641-17646660 None:intergenic 60.0%
! TGACTGGCCGGGATCTAGCA+TGG - chr1_4:17648289-17648308 Msa0153770:intron 60.0%
GCGAAGTCCACAACCCCAGC+AGG + chr1_4:17644706-17644725 None:intergenic 65.0%
!! GCGGCCAAAAGTGCTTCGGG+TGG - chr1_4:17644802-17644821 Msa0153770:intron 65.0%
TGGGGAAGCTACCCCACGGT+AGG - chr1_4:17646626-17646645 Msa0153770:intron 65.0%
GGGGAAGCTACCCCACGGTA+GGG - chr1_4:17646627-17646646 Msa0153770:intron 65.0%
AGCTACCCCACGGTAGGGCA+AGG - chr1_4:17646632-17646651 Msa0153770:intron 65.0%
GGTCACCTTGCCCTACCGTG+GGG + chr1_4:17646640-17646659 None:intergenic 65.0%
GAGGTCACCTTGCCCTACCG+TGG + chr1_4:17646642-17646661 None:intergenic 65.0%
CACTCCCATTGGCAGGGCTC+TGG - chr1_4:17647398-17647417 Msa0153770:intron 65.0%
CAGTCCCCCGGTTCAGGACC+AGG + chr1_4:17643035-17643054 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 17642399 17648769 17642399 ID=Msa0153770;Name=Msa0153770
chr1_4 mRNA 17642399 17648769 17642399 ID=Msa0153770-mRNA-1;Parent=Msa0153770;Name=Msa0153770-mRNA-1;_AED=0.02;_eAED=0.02;_QI=69|1|1|1|1|1|4|152|343
chr1_4 exon 17642399 17643033 17642399 ID=Msa0153770-mRNA-1:exon:6640;Parent=Msa0153770-mRNA-1
chr1_4 exon 17644399 17644697 17644399 ID=Msa0153770-mRNA-1:exon:6639;Parent=Msa0153770-mRNA-1
chr1_4 exon 17646283 17646505 17646283 ID=Msa0153770-mRNA-1:exon:6638;Parent=Msa0153770-mRNA-1
chr1_4 exon 17648674 17648769 17648674 ID=Msa0153770-mRNA-1:exon:6637;Parent=Msa0153770-mRNA-1
chr1_4 five_prime_UTR 17648701 17648769 17648701 ID=Msa0153770-mRNA-1:five_prime_utr;Parent=Msa0153770-mRNA-1
chr1_4 CDS 17648674 17648700 17648674 ID=Msa0153770-mRNA-1:cds;Parent=Msa0153770-mRNA-1
chr1_4 CDS 17646283 17646505 17646283 ID=Msa0153770-mRNA-1:cds;Parent=Msa0153770-mRNA-1
chr1_4 CDS 17644399 17644697 17644399 ID=Msa0153770-mRNA-1:cds;Parent=Msa0153770-mRNA-1
chr1_4 CDS 17642551 17643033 17642551 ID=Msa0153770-mRNA-1:cds;Parent=Msa0153770-mRNA-1
chr1_4 three_prime_UTR 17642399 17642550 17642399 ID=Msa0153770-mRNA-1:three_prime_utr;Parent=Msa0153770-mRNA-1
Gene Sequence

>Msa0153770

ATGGCTTCTTCTTCTTCTCCTCACGAGGAGCAATATGGAACTGAGGGTACTGATAATTATGAGACAACCTGCTGGGGTTGTGGACTTCGCGTTATGCTTCCATCCGGTGCATCCATATTCAAATGTGGTTGGTGTGGAGCCATTACAAATCAAAACAAAAAGAAACGCGGCCAAAAGTGCTTCGGGTGGAGAGTACTGCGTGATCGATGCTTTCTTTCTTCTGTCATCATATTTATGTTGTTTGTAATATTTGGAGGGGTGTGGGCAGTGTACCCTATAGTCTTCTCTGTCAGTCTTTTATGGGGAATTTTTCACTCAATCATTACAACAATATTGTCCATAGCTACACTTTCCTTTTTTAGCCTTGCAGCATTTAGGTGTGCTGGAACACCACCAAATATATTATGGGGAAGCTACCCCACGGTAGGGCAAGGTGACCTCGAAAATTATACATTCTGTCACTACTGCTCGAAGCCAAAGTCACCTAGAGCACATCATTGTCGTTCATGCGGAAAATGTATACTGGACATGGATCATCACTGTCCATTTATTGGCAACTGTGTGGGTGCAGCTAATCACTACAGCTTCGTTTGCTTCCTCATTTCGGCAGTGCTGAGCACAATCTATGTCTCTATAATGTCTGTATATGCTAGCATGCATATTTGGCCACCATTGTCATACTCCCTCGGACGCTTAAAGGGTATGACTGGCCGGGATCTAGCATGGAGACTTATGAATGAACTTCTAATTGCCTTCTTGAGATCTACGCTGTTTCTATCGTCTAGAGGACTTCTTCTTGCCTATCTTTTTATCGCGAGTGTTTCATTGCAGATAGGATTGAGTGTTCTTTTATGGCAGCAGCTCTCTTTTATATATCAAGGGAAAACTTATCTGAGTAACTTAAGTTCGCATGCAGATAATGAAGAAGAAAAGAAAGATTGCCAAAATCTTGTTAGATTTTTTGGTTTTCAACATCCTGTATCAAGATTTTTCTCAAACTTCCGTGTTACTCAGAAGAGGCACGATACATAA

Protein sequence

>Msa0153770

MASSSSPHEEQYGTEGTDNYETTCWGCGLRVMLPSGASIFKCGWCGAITNQNKKKRGQKCFGWRVLRDRCFLSSVIIFMLFVIFGGVWAVYPIVFSVSLLWGIFHSIITTILSIATLSFFSLAAFRCAGTPPNILWGSYPTVGQGDLENYTFCHYCSKPKSPRAHHCRSCGKCILDMDHHCPFIGNCVGAANHYSFVCFLISAVLSTIYVSIMSVYASMHIWPPLSYSLGRLKGMTGRDLAWRLMNELLIAFLRSTLFLSSRGLLLAYLFIASVSLQIGLSVLLWQQLSFIYQGKTYLSNLSSHADNEEEKKDCQNLVRFFGFQHPVSRFFSNFRVTQKRHDT*