Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016820 | sp|A0A445AGS0|IFI4E_ARAHY | 77.612 | 201 | 45 | 0 | 8 | 208 | 3 | 203 | 4.45e-120 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016820 | Msa0108750 | 0.812772 | 3.583652e-51 | -8.615850e-47 |
| Msa0016820 | Msa0156770 | 0.810822 | 9.522099e-51 | -8.615850e-47 |
| Msa0016820 | Msa0786650 | 0.827064 | 1.922431e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016820 | MtrunA17_Chr1g0168461 | 95.192 | 208 | 7 | 1 | 1 | 208 | 1 | 205 | 9.77e-149 | 411 |
| Msa0016820 | MtrunA17_Chr2g0285161 | 53.439 | 189 | 83 | 4 | 23 | 208 | 39 | 225 | 1.72e-66 | 204 |
| Msa0016820 | MtrunA17_Chr6g0461311 | 34.507 | 142 | 92 | 1 | 34 | 175 | 48 | 188 | 3.25e-28 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016820 | AT5G35620.3 | 60.099 | 203 | 68 | 5 | 13 | 208 | 2 | 198 | 2.34e-81 | 241 |
| Msa0016820 | AT5G35620.1 | 60.099 | 203 | 68 | 5 | 13 | 208 | 2 | 198 | 2.34e-81 | 241 |
| Msa0016820 | AT5G35620.2 | 62.424 | 165 | 53 | 4 | 13 | 170 | 2 | 164 | 4.44e-66 | 201 |
| Msa0016820 | AT4G18040.1 | 52.273 | 176 | 81 | 2 | 34 | 207 | 60 | 234 | 1.03e-61 | 192 |
| Msa0016820 | AT1G29590.1 | 50.847 | 177 | 84 | 2 | 34 | 208 | 65 | 240 | 2.18e-61 | 191 |
| Msa0016820 | AT1G29550.1 | 50.847 | 177 | 84 | 2 | 34 | 208 | 65 | 240 | 3.30e-61 | 191 |
| Msa0016820 | AT5G18110.1 | 35.211 | 142 | 91 | 1 | 34 | 175 | 43 | 183 | 6.38e-28 | 105 |
Find 90 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGACTTTCACTTGTTTA+AGG | 0.094149 | 1_1:+27959273 | Msa0016820:CDS |
| CACTCGGGATCTTCCCATTT+TGG | 0.167355 | 1_1:-27959307 | None:intergenic |
| TAGAGAGAAGATGGAATTTC+TGG | 0.177234 | 1_1:+27957587 | Msa0016820:CDS |
| AGGATGGGATTGAACCAAAA+TGG | 0.219575 | 1_1:+27959293 | Msa0016820:CDS |
| TTGTTCCGTTATCCCTCTTT+TGG | 0.239593 | 1_1:+27960909 | Msa0016820:three_prime_UTR |
| ACCTAAACAAGGTGCTGCTT+GGG | 0.298883 | 1_1:+27957627 | Msa0016820:CDS |
| TCGATACCGTTGAAGAGTTT+TGG | 0.298995 | 1_1:+27957677 | Msa0016820:CDS |
| GCTTTGATTGGCGAGCAATT+TGG | 0.311257 | 1_1:+27959511 | Msa0016820:CDS |
| AAGATTGCCCTTTGATTTGC+TGG | 0.317297 | 1_1:-27959356 | None:intergenic |
| CTTGTACAATCATAATAGTT+TGG | 0.322066 | 1_1:+27961084 | Msa0016820:three_prime_UTR |
| GGAAGTGGCGGCGGCTGTTC+CGG | 0.330565 | 1_1:+27957525 | Msa0016820:CDS |
| CCCCAAGCAGCACCTTGTTT+AGG | 0.348201 | 1_1:-27957628 | None:intergenic |
| AGCAGCACCTTGTTTAGGTT+TGG | 0.348367 | 1_1:-27957623 | None:intergenic |
| AACAACACAAATCAAATTCA+TGG | 0.370089 | 1_1:-27961057 | None:intergenic |
| TCCGGTGCCGGTGCGGGTAC+CGG | 0.370120 | 1_1:-27957544 | None:intergenic |
| CTTTCCTCCATTGGCACACT+CGG | 0.373760 | 1_1:-27959323 | None:intergenic |
| AGCATTGCCAGGCAACTTGC+TGG | 0.374886 | 1_1:-27959254 | None:intergenic |
| TGACGGACAGTGTCAAGAAT+TGG | 0.387416 | 1_1:-27960955 | None:intergenic |
| CCCTGTCTCCGGTGCCGGTG+CGG | 0.405136 | 1_1:-27957551 | None:intergenic |
| CACCTTGTTTAGGTTTGGAT+TGG | 0.410534 | 1_1:-27957618 | None:intergenic |
| CCTGTCTCCGGTGCCGGTGC+GGG | 0.416968 | 1_1:-27957550 | None:intergenic |
| GACTTTCACTTGTTTAAGGA+TGG | 0.426329 | 1_1:+27959277 | Msa0016820:CDS |
| TTTAGCCCTGTCTCCGGTGC+CGG | 0.427478 | 1_1:-27957556 | None:intergenic |
| CCCGCACCGGCACCGGAGAC+AGG | 0.427726 | 1_1:+27957550 | Msa0016820:CDS |
| GTATCGAGCCTTTGCACCTC+GGG | 0.428704 | 1_1:-27960778 | None:intergenic |
| CTCTACCGCGGCAGAGGAAG+TGG | 0.436984 | 1_1:+27957510 | Msa0016820:CDS |
| GCATTGCCAGGCAACTTGCT+GGG | 0.440224 | 1_1:-27959253 | None:intergenic |
| AACCTAAACAAGGTGCTGCT+TGG | 0.442662 | 1_1:+27957626 | Msa0016820:CDS |
| GTGCTGGCAATGCTGTTGTA+TGG | 0.450816 | 1_1:+27960837 | Msa0016820:three_prime_UTR |
| GGATGGGATTGAACCAAAAT+GGG | 0.454728 | 1_1:+27959294 | Msa0016820:CDS |
| GAATAGTTGATGGCTTTGAT+TGG | 0.459935 | 1_1:+27959499 | Msa0016820:intron |
| CGCGGCAGAGGAAGTGGCGG+CGG | 0.461792 | 1_1:+27957516 | Msa0016820:CDS |
| TTTATAATGCAGATGAGCAT+TGG | 0.470732 | 1_1:+27960613 | Msa0016820:intron |
| GGCTGTTCCGGTACCCGCAC+CGG | 0.473752 | 1_1:+27957537 | Msa0016820:CDS |
| AACACAAACTAGAGAGAAGA+TGG | 0.478210 | 1_1:+27957578 | Msa0016820:CDS |
| TCCGGTACCCGCACCGGCAC+CGG | 0.484224 | 1_1:+27957543 | Msa0016820:CDS |
| GCGGTAGAGCCTTCAACGAT+TGG | 0.484430 | 1_1:-27957496 | None:intergenic |
| GAGAGTCCACTTTCCTCCAT+TGG | 0.488880 | 1_1:-27959332 | None:intergenic |
| GGAGACACTGAGGACATTTG+CGG | 0.492090 | 1_1:+27959532 | Msa0016820:CDS |
| TTTGTGTCGAGAAGAGAAGA+AGG | 0.492574 | 1_1:-27957453 | None:intergenic |
| GACTCTCACCAGCAAATCAA+AGG | 0.498552 | 1_1:+27959348 | Msa0016820:CDS |
| CTCAGTGTCATAAACTTACA+AGG | 0.499767 | 1_1:-27961114 | None:intergenic |
| TTCAAGCCCAGCAAGTTGCC+TGG | 0.503711 | 1_1:+27959247 | Msa0016820:CDS |
| TGCGAGTGTACGCCAGTGGC+AGG | 0.504625 | 1_1:+27959561 | Msa0016820:CDS |
| AATGCACTTCCGTATGGTTG+AGG | 0.505677 | 1_1:+27960872 | Msa0016820:three_prime_UTR |
| CTTCACCACTCTACAATACT+CGG | 0.508064 | 1_1:-27961272 | None:intergenic |
| TGCTAAAACCCGAGGTGCAA+AGG | 0.508101 | 1_1:+27960770 | Msa0016820:CDS |
| ACTTTCACTTGTTTAAGGAT+GGG | 0.509759 | 1_1:+27959278 | Msa0016820:CDS |
| TGAAGGCTCTACCGCGGCAG+AGG | 0.510636 | 1_1:+27957504 | Msa0016820:CDS |
| AAGTGAAAGTCAGCATTGCC+AGG | 0.511306 | 1_1:-27959265 | None:intergenic |
| TTGGGGAACCACTCTTCGTA+AGG | 0.512191 | 1_1:+27957645 | Msa0016820:CDS |
| CGAGAAGAGAAGAAGGAAAG+AGG | 0.512278 | 1_1:-27957446 | None:intergenic |
| TACACCCAAAAGAGGGATAA+CGG | 0.514821 | 1_1:-27960914 | None:intergenic |
| AGTAGTATTACACCCAAAAG+AGG | 0.524374 | 1_1:-27960922 | None:intergenic |
| TGTATCGAGCCTTTGCACCT+CGG | 0.539970 | 1_1:-27960779 | None:intergenic |
| TATTAGAATGCACTTCCGTA+TGG | 0.547206 | 1_1:+27960866 | Msa0016820:three_prime_UTR |
| ACGAAAGTTTGTCCTGCCAC+TGG | 0.555236 | 1_1:-27959573 | None:intergenic |
| ACAACAGAACCAATCGTTGA+AGG | 0.556771 | 1_1:+27957487 | Msa0016820:CDS |
| CCGCACCGGCACCGGAGACA+GGG | 0.557169 | 1_1:+27957551 | Msa0016820:CDS |
| CGCCGCCACTTCCTCTGCCG+CGG | 0.557840 | 1_1:-27957515 | None:intergenic |
| TTTCCTCCATTGGCACACTC+GGG | 0.558375 | 1_1:-27959322 | None:intergenic |
| AGATGAGCATTGGAAGGAAG+TGG | 0.568986 | 1_1:+27960623 | Msa0016820:intron |
| GAGCATTGGAAGGAAGTGGA+AGG | 0.573080 | 1_1:+27960627 | Msa0016820:CDS |
| GAAGATCCCGAGTGTGCCAA+TGG | 0.580686 | 1_1:+27959316 | Msa0016820:CDS |
| TAATGCAGATGAGCATTGGA+AGG | 0.587446 | 1_1:+27960617 | Msa0016820:intron |
| GGAGTAAACCTTACGAAGAG+TGG | 0.590798 | 1_1:-27957653 | None:intergenic |
| CTTCTCGACACAAAGAAACA+TGG | 0.594166 | 1_1:+27957462 | Msa0016820:exon |
| AAACTCTTCAACGGTATCGA+AGG | 0.596284 | 1_1:-27957674 | None:intergenic |
| AAATTAACACCTCAACCATA+CGG | 0.598415 | 1_1:-27960881 | None:intergenic |
| GTAGTATTACACCCAAAAGA+GGG | 0.608680 | 1_1:-27960921 | None:intergenic |
| ACTCTCACCAGCAAATCAAA+GGG | 0.610543 | 1_1:+27959349 | Msa0016820:CDS |
| AGCAGCAAATGAGTCTAACC+AGG | 0.617559 | 1_1:+27959609 | Msa0016820:CDS |
| CCTAAACAAGGTGCTGCTTG+GGG | 0.622835 | 1_1:+27957628 | Msa0016820:CDS |
| TCAGTGTCATAAACTTACAA+GGG | 0.634302 | 1_1:-27961113 | None:intergenic |
| TACCGCGGCAGAGGAAGTGG+CGG | 0.635065 | 1_1:+27957513 | Msa0016820:CDS |
| GGCAGGACAAACTTTCGTTG+TGG | 0.637833 | 1_1:+27959578 | Msa0016820:CDS |
| AGTGTGCCAATGGAGGAAAG+TGG | 0.640587 | 1_1:+27959326 | Msa0016820:CDS |
| GATCCCGAGTGTGCCAATGG+AGG | 0.645027 | 1_1:+27959319 | Msa0016820:CDS |
| TAGTTGCGAGTGTACGCCAG+TGG | 0.651527 | 1_1:+27959557 | Msa0016820:CDS |
| ATCAAATTCATGGAAAACTG+TGG | 0.652271 | 1_1:-27961047 | None:intergenic |
| ACAAGCCGAGTATTGTAGAG+TGG | 0.655731 | 1_1:+27961267 | Msa0016820:three_prime_UTR |
| GTACCACCAAAACTCTTCAA+CGG | 0.656585 | 1_1:-27957683 | None:intergenic |
| CAGCATTGCCAGCACAAGCG+CGG | 0.656827 | 1_1:-27960829 | None:intergenic |
| AATTACAGTTTCGAGCCACA+TGG | 0.668557 | 1_1:-27959383 | None:intergenic |
| CAGGAAGATGCTAAAACCCG+AGG | 0.674698 | 1_1:+27960762 | Msa0016820:intron |
| AACCAATCCAAACCTAAACA+AGG | 0.681137 | 1_1:+27957616 | Msa0016820:CDS |
| CAGTGTCATAAACTTACAAG+GGG | 0.684155 | 1_1:-27961112 | None:intergenic |
| AGGGCAATCTTGATACCATG+TGG | 0.704318 | 1_1:+27959368 | Msa0016820:CDS |
| AATCGTTGAAGGCTCTACCG+CGG | 0.717531 | 1_1:+27957498 | Msa0016820:CDS |
| CGAGCAATTTGGAGACACTG+AGG | 0.732972 | 1_1:+27959522 | Msa0016820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAGAAAATAAAAAAAA+CGG | - | chr1_1:27957727-27957746 | None:intergenic | 10.0% |
| !!! | TTTATTTTCTATTGAATTTA+AGG | + | chr1_1:27957732-27957751 | Msa0016820:intron | 10.0% |
| !!! | TATTGAAAATTTATTTTGAA+TGG | + | chr1_1:27957970-27957989 | Msa0016820:intron | 10.0% |
| !!! | TTTTTTTTAAAGAATATATG+GGG | + | chr1_1:27959430-27959449 | Msa0016820:intron | 10.0% |
| !!! | TTTTTTGATGATTTTATTTG+TGG | + | chr1_1:27957898-27957917 | Msa0016820:intron | 15.0% |
| !!! | TTTTTGATGATTTTATTTGT+GGG | + | chr1_1:27957899-27957918 | Msa0016820:intron | 15.0% |
| !!! | TTTATTCAATAAGCTATTTT+AGG | + | chr1_1:27959874-27959893 | Msa0016820:intron | 15.0% |
| !!! | TTATTCAATAAGCTATTTTA+GGG | + | chr1_1:27959875-27959894 | Msa0016820:intron | 15.0% |
| !!! | TGTTTTAAAACTCTAATTTT+AGG | - | chr1_1:27961250-27961269 | None:intergenic | 15.0% |
| !!! | TATTGATTTTTGTAGATCTT+AGG | + | chr1_1:27957804-27957823 | Msa0016820:intron | 20.0% |
| !!! | TTTTGATGATTTTATTTGTG+GGG | + | chr1_1:27957900-27957919 | Msa0016820:intron | 20.0% |
| !! | TAATTAGAATCTAAGAGATA+TGG | + | chr1_1:27958023-27958042 | Msa0016820:intron | 20.0% |
| !!! | AAGTTGTTTTTTAGTAGATA+TGG | + | chr1_1:27958065-27958084 | Msa0016820:intron | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr1_1:27958404-27958423 | Msa0016820:intron | 20.0% |
| !! | TTAAAAAAGTGATGTAAATG+CGG | + | chr1_1:27958651-27958670 | Msa0016820:intron | 20.0% |
| !!! | TGTTTTTATTGAATAGTTGA+TGG | + | chr1_1:27959489-27959508 | Msa0016820:intron | 20.0% |
| !! | TGAACTATAATGAAAAATGA+CGG | - | chr1_1:27960975-27960994 | None:intergenic | 20.0% |
| !!! | TTTGATGATTTTATTTGTGG+GGG | + | chr1_1:27957901-27957920 | Msa0016820:intron | 25.0% |
| !!! | TTGAATGGTTTTGTTATGTT+TGG | + | chr1_1:27957985-27958004 | Msa0016820:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr1_1:27958407-27958426 | Msa0016820:intron | 25.0% |
| ! | AGAAGATTATAACCCTTTAA+AGG | - | chr1_1:27959011-27959030 | None:intergenic | 25.0% |
| ! | TTATTATTATTTGAACGTCC+AGG | + | chr1_1:27959154-27959173 | Msa0016820:intron | 25.0% |
| ! | ATGATTGTTGTCACTAATTA+TGG | + | chr1_1:27959466-27959485 | Msa0016820:intron | 25.0% |
| !! | AGAAAAGCATATAAATTTGC+AGG | - | chr1_1:27959660-27959679 | None:intergenic | 25.0% |
| !!! | ATGTTGGTATTTTTAGACTT+AGG | + | chr1_1:27959817-27959836 | Msa0016820:intron | 25.0% |
| !!! | TGTTGGTATTTTTAGACTTA+GGG | + | chr1_1:27959818-27959837 | Msa0016820:intron | 25.0% |
| !!! | TATTTTAGGGAGATTAATTG+AGG | + | chr1_1:27959888-27959907 | Msa0016820:intron | 25.0% |
| !!! | TTTTAGTTCCAGAATTATGA+TGG | + | chr1_1:27960100-27960119 | Msa0016820:intron | 25.0% |
| !!! | GATTTTTTTGTTGACTTCTT+TGG | + | chr1_1:27960124-27960143 | Msa0016820:intron | 25.0% |
| ! | AAAAAAAAAAACCGAAGGAA+CGG | - | chr1_1:27960218-27960237 | None:intergenic | 25.0% |
| !!! | TTCCTTCGGTTTTTTTTTTT+TGG | + | chr1_1:27960218-27960237 | Msa0016820:intron | 25.0% |
| !!! | TCCTTCGGTTTTTTTTTTTT+GGG | + | chr1_1:27960219-27960238 | Msa0016820:intron | 25.0% |
| ! | TTGTTGTCATTCAGAATTTA+AGG | - | chr1_1:27960253-27960272 | None:intergenic | 25.0% |
| ! | TCAACATTCAAATCAACATA+AGG | - | chr1_1:27960381-27960400 | None:intergenic | 25.0% |
| ! | TAAACATCGATAATTAGTTG+TGG | + | chr1_1:27960407-27960426 | Msa0016820:intron | 25.0% |
| !! | CAAAATTTCATGCTTTTAGA+AGG | - | chr1_1:27961017-27961036 | None:intergenic | 25.0% |
| ! | AACAACACAAATCAAATTCA+TGG | - | chr1_1:27961060-27961079 | None:intergenic | 25.0% |
| ! | CTTGTACAATCATAATAGTT+TGG | + | chr1_1:27961084-27961103 | Msa0016820:three_prime_UTR | 25.0% |
| !!! | TTTGGTGGTACGTTTTTTTT+AGG | + | chr1_1:27957695-27957714 | Msa0016820:intron | 30.0% |
| !!! | TTGGTGGTACGTTTTTTTTA+GGG | + | chr1_1:27957696-27957715 | Msa0016820:intron | 30.0% |
| ! | TGATTTTTGTAGATCTTAGG+AGG | + | chr1_1:27957807-27957826 | Msa0016820:intron | 30.0% |
| ! | GATTTTTGTAGATCTTAGGA+GGG | + | chr1_1:27957808-27957827 | Msa0016820:intron | 30.0% |
| TTATTGCGTTGAATACTAGA+CGG | + | chr1_1:27958143-27958162 | Msa0016820:intron | 30.0% | |
| CACGTATTGTAGAAAAAAGA+TGG | + | chr1_1:27958217-27958236 | Msa0016820:intron | 30.0% | |
| ! | GTTTCTCTTATAGTTTTCCT+AGG | - | chr1_1:27958353-27958372 | None:intergenic | 30.0% |
| TAGTCAAATGTGCCTTTAAA+GGG | + | chr1_1:27958996-27959015 | Msa0016820:intron | 30.0% | |
| TTCACATATATACTGAACAC+TGG | + | chr1_1:27959047-27959066 | Msa0016820:intron | 30.0% | |
| TCACATATATACTGAACACT+GGG | + | chr1_1:27959048-27959067 | Msa0016820:intron | 30.0% | |
| CATCATTATTTACCAAAACC+TGG | - | chr1_1:27959175-27959194 | None:intergenic | 30.0% | |
| !! | CAGGTTTTGGTAAATAATGA+TGG | + | chr1_1:27959173-27959192 | Msa0016820:intron | 30.0% |
| ACTTTCACTTGTTTAAGGAT+GGG | + | chr1_1:27959278-27959297 | Msa0016820:CDS | 30.0% | |
| AAAGAATATATGGGGTAATC+TGG | + | chr1_1:27959438-27959457 | Msa0016820:intron | 30.0% | |
| TATAAGAATAACAACAGACC+TGG | - | chr1_1:27959630-27959649 | None:intergenic | 30.0% | |
| ATATTGTTGTACCTAGACAA+TGG | + | chr1_1:27959718-27959737 | Msa0016820:intron | 30.0% | |
| TGTAAGCACAAAACAACTTA+TGG | + | chr1_1:27959944-27959963 | Msa0016820:intron | 30.0% | |
| AAAAATCGCCATCATAATTC+TGG | - | chr1_1:27960111-27960130 | None:intergenic | 30.0% | |
| GTCATTTCAACATTAAAGTC+TGG | + | chr1_1:27960146-27960165 | Msa0016820:intron | 30.0% | |
| !!! | CCTTCGGTTTTTTTTTTTTG+GGG | + | chr1_1:27960220-27960239 | Msa0016820:intron | 30.0% |
| ATTCTGAATGACAACAAAAC+AGG | + | chr1_1:27960256-27960275 | Msa0016820:intron | 30.0% | |
| TCATTTCTTCTTTCCCAAAA+GGG | + | chr1_1:27960293-27960312 | Msa0016820:intron | 30.0% | |
| TTTATAATGCAGATGAGCAT+TGG | + | chr1_1:27960613-27960632 | Msa0016820:intron | 30.0% | |
| ! | TTCTGCTCCTAAATTTTAAG+TGG | + | chr1_1:27960697-27960716 | Msa0016820:intron | 30.0% |
| GCAGTAACCACTTAAAATTT+AGG | - | chr1_1:27960707-27960726 | None:intergenic | 30.0% | |
| CTTACATGTTCAATTGTTAC+AGG | + | chr1_1:27960743-27960762 | Msa0016820:intron | 30.0% | |
| AAATTAACACCTCAACCATA+CGG | - | chr1_1:27960884-27960903 | None:intergenic | 30.0% | |
| ATCAAATTCATGGAAAACTG+TGG | - | chr1_1:27961050-27961069 | None:intergenic | 30.0% | |
| TCAGTGTCATAAACTTACAA+GGG | - | chr1_1:27961116-27961135 | None:intergenic | 30.0% | |
| !!! | CAATACTCAGCTTGTTTTAA+AGG | - | chr1_1:27961140-27961159 | None:intergenic | 30.0% |
| AACACAAACTAGAGAGAAGA+TGG | + | chr1_1:27957578-27957597 | Msa0016820:CDS | 35.0% | |
| TAGAGAGAAGATGGAATTTC+TGG | + | chr1_1:27957587-27957606 | Msa0016820:CDS | 35.0% | |
| AACCAATCCAAACCTAAACA+AGG | + | chr1_1:27957616-27957635 | Msa0016820:CDS | 35.0% | |
| TATTGCGTTGAATACTAGAC+GGG | + | chr1_1:27958144-27958163 | Msa0016820:intron | 35.0% | |
| ! | GACGTTTAGATTTTGCAGTA+AGG | + | chr1_1:27958279-27958298 | Msa0016820:intron | 35.0% |
| ! | AATGCTTGGTTGTTGTTGTT+TGG | + | chr1_1:27958452-27958471 | Msa0016820:intron | 35.0% |
| CGGTATATGACACAACATTA+TGG | + | chr1_1:27958671-27958690 | Msa0016820:intron | 35.0% | |
| GTAGTCAAATGTGCCTTTAA+AGG | + | chr1_1:27958995-27959014 | Msa0016820:intron | 35.0% | |
| ! | TTATTTGAACGTCCAGGTTT+TGG | + | chr1_1:27959160-27959179 | Msa0016820:intron | 35.0% |
| !! | TGCTGACTTTCACTTGTTTA+AGG | + | chr1_1:27959273-27959292 | Msa0016820:CDS | 35.0% |
| GACTTTCACTTGTTTAAGGA+TGG | + | chr1_1:27959277-27959296 | Msa0016820:CDS | 35.0% | |
| !! | GAATAGTTGATGGCTTTGAT+TGG | + | chr1_1:27959499-27959518 | Msa0016820:intron | 35.0% |
| AATGCCTTCTTAAAGCATGT+CGG | + | chr1_1:27960051-27960070 | Msa0016820:intron | 35.0% | |
| CCCCAAAAAAAAAAAACCGA+AGG | - | chr1_1:27960223-27960242 | None:intergenic | 35.0% | |
| TTTGGGAAAGAAGAAATGAC+AGG | - | chr1_1:27960292-27960311 | None:intergenic | 35.0% | |
| GTCATTTCTTCTTTCCCAAA+AGG | + | chr1_1:27960292-27960311 | Msa0016820:intron | 35.0% | |
| TTCCTTAAACATCAACGTTG+CGG | + | chr1_1:27960495-27960514 | Msa0016820:intron | 35.0% | |
| !! | TTGACACGAGCTTTTTGTTT+TGG | + | chr1_1:27960588-27960607 | Msa0016820:intron | 35.0% |
| TATTAGAATGCACTTCCGTA+TGG | + | chr1_1:27960866-27960885 | Msa0016820:three_prime_UTR | 35.0% | |
| GTAGTATTACACCCAAAAGA+GGG | - | chr1_1:27960924-27960943 | None:intergenic | 35.0% | |
| AGTAGTATTACACCCAAAAG+AGG | - | chr1_1:27960925-27960944 | None:intergenic | 35.0% | |
| !! | CATGCTTTTAGAAGGTTACA+AGG | - | chr1_1:27961009-27961028 | None:intergenic | 35.0% |
| CAGTGTCATAAACTTACAAG+GGG | - | chr1_1:27961115-27961134 | None:intergenic | 35.0% | |
| CTCAGTGTCATAAACTTACA+AGG | - | chr1_1:27961117-27961136 | None:intergenic | 35.0% | |
| CAGTGTCATCAATTGTTACT+TGG | + | chr1_1:27961193-27961212 | Msa0016820:intron | 35.0% | |
| TTTGTGTCGAGAAGAGAAGA+AGG | - | chr1_1:27957456-27957475 | None:intergenic | 40.0% | |
| CTTCTCGACACAAAGAAACA+TGG | + | chr1_1:27957462-27957481 | Msa0016820:exon | 40.0% | |
| ACAACAGAACCAATCGTTGA+AGG | + | chr1_1:27957487-27957506 | Msa0016820:CDS | 40.0% | |
| ! | CACCTTGTTTAGGTTTGGAT+TGG | - | chr1_1:27957621-27957640 | None:intergenic | 40.0% |
| ! | AAACTCTTCAACGGTATCGA+AGG | - | chr1_1:27957677-27957696 | None:intergenic | 40.0% |
| ! | TCGATACCGTTGAAGAGTTT+TGG | + | chr1_1:27957677-27957696 | Msa0016820:CDS | 40.0% |
| !! | ATACCGTTGAAGAGTTTTGG+TGG | + | chr1_1:27957680-27957699 | Msa0016820:CDS | 40.0% |
| GTACCACCAAAACTCTTCAA+CGG | - | chr1_1:27957686-27957705 | None:intergenic | 40.0% | |
| ATCTTAGGAGGGAGATACTT+AGG | + | chr1_1:27957819-27957838 | Msa0016820:intron | 40.0% | |
| TCTTAGGAGGGAGATACTTA+GGG | + | chr1_1:27957820-27957839 | Msa0016820:intron | 40.0% | |
| AAACCAGACTTAGGTGGTTT+GGG | + | chr1_1:27958243-27958262 | Msa0016820:intron | 40.0% | |
| AGAGTAGATCAGATGAAGAG+TGG | + | chr1_1:27958302-27958321 | Msa0016820:intron | 40.0% | |
| AGAGTGGTCAAATAGCTAGA+CGG | + | chr1_1:27958318-27958337 | Msa0016820:intron | 40.0% | |
| ! | TGGTTGTTGTTGTCGTTGTT+TGG | + | chr1_1:27958745-27958764 | Msa0016820:intron | 40.0% |
| AGGATGGGATTGAACCAAAA+TGG | + | chr1_1:27959293-27959312 | Msa0016820:CDS | 40.0% | |
| GGATGGGATTGAACCAAAAT+GGG | + | chr1_1:27959294-27959313 | Msa0016820:CDS | 40.0% | |
| ACTCTCACCAGCAAATCAAA+GGG | + | chr1_1:27959349-27959368 | Msa0016820:CDS | 40.0% | |
| !! | AAGATTGCCCTTTGATTTGC+TGG | - | chr1_1:27959359-27959378 | None:intergenic | 40.0% |
| AATTACAGTTTCGAGCCACA+TGG | - | chr1_1:27959386-27959405 | None:intergenic | 40.0% | |
| ACACTTCCTTCACATTGTGA+AGG | - | chr1_1:27959788-27959807 | None:intergenic | 40.0% | |
| ! | TCACAATGTGAAGGAAGTGT+CGG | + | chr1_1:27959788-27959807 | Msa0016820:intron | 40.0% |
| !! | GTTACCGACATGCTTTAAGA+AGG | - | chr1_1:27960058-27960077 | None:intergenic | 40.0% |
| AATAAGTTCAGAAGAGGGGA+GGG | - | chr1_1:27960194-27960213 | None:intergenic | 40.0% | |
| ACGGCAATAAGTTCAGAAGA+GGG | - | chr1_1:27960199-27960218 | None:intergenic | 40.0% | |
| AACGGCAATAAGTTCAGAAG+AGG | - | chr1_1:27960200-27960219 | None:intergenic | 40.0% | |
| TGAACTTATTGCCGTTCCTT+CGG | + | chr1_1:27960204-27960223 | Msa0016820:intron | 40.0% | |
| GAAAGAAGAAATGACAGGAC+AGG | - | chr1_1:27960287-27960306 | None:intergenic | 40.0% | |
| TACCGCAACGTTGATGTTTA+AGG | - | chr1_1:27960500-27960519 | None:intergenic | 40.0% | |
| CAATATAGTCCATCGAGTAG+CGG | - | chr1_1:27960529-27960548 | None:intergenic | 40.0% | |
| !!! | ATCTCCTATGAGTTTTGAGG+TGG | - | chr1_1:27960563-27960582 | None:intergenic | 40.0% |
| ! | GTCATCTCCTATGAGTTTTG+AGG | - | chr1_1:27960566-27960585 | None:intergenic | 40.0% |
| !! | TAATGCAGATGAGCATTGGA+AGG | + | chr1_1:27960617-27960636 | Msa0016820:intron | 40.0% |
| ! | TTGTTCCGTTATCCCTCTTT+TGG | + | chr1_1:27960909-27960928 | Msa0016820:three_prime_UTR | 40.0% |
| ! | TGTTCCGTTATCCCTCTTTT+GGG | + | chr1_1:27960910-27960929 | Msa0016820:three_prime_UTR | 40.0% |
| TACACCCAAAAGAGGGATAA+CGG | - | chr1_1:27960917-27960936 | None:intergenic | 40.0% | |
| ! | ACAAGCTGAGTATTGTAGAG+TGG | + | chr1_1:27961145-27961164 | Msa0016820:intron | 40.0% |
| ! | TGAGTATTGTAGAGTGGTGA+AGG | + | chr1_1:27961151-27961170 | Msa0016820:intron | 40.0% |
| ! | GAGTATTGTAGAGTGGTGAA+GGG | + | chr1_1:27961152-27961171 | Msa0016820:intron | 40.0% |
| !!! | TTGTGTTTTAGCCCTGTCTC+CGG | - | chr1_1:27957565-27957584 | None:intergenic | 45.0% |
| ! | AGCAGCACCTTGTTTAGGTT+TGG | - | chr1_1:27957626-27957645 | None:intergenic | 45.0% |
| !! | AACCTAAACAAGGTGCTGCT+TGG | + | chr1_1:27957626-27957645 | Msa0016820:CDS | 45.0% |
| !! | ACCTAAACAAGGTGCTGCTT+GGG | + | chr1_1:27957627-27957646 | Msa0016820:CDS | 45.0% |
| GGAGTAAACCTTACGAAGAG+TGG | - | chr1_1:27957656-27957675 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGTT+GGG | + | chr1_1:27958190-27958209 | Msa0016820:intron | 45.0% | |
| AGATGGTCGAAACCAGACTT+AGG | + | chr1_1:27958234-27958253 | Msa0016820:intron | 45.0% | |
| GAAACCAGACTTAGGTGGTT+TGG | + | chr1_1:27958242-27958261 | Msa0016820:intron | 45.0% | |
| CCAAGCATTATCCCACTACA+TGG | - | chr1_1:27958441-27958460 | None:intergenic | 45.0% | |
| ! | CCATGTAGTGGGATAATGCT+TGG | + | chr1_1:27958438-27958457 | Msa0016820:intron | 45.0% |
| AAGTGAAAGTCAGCATTGCC+AGG | - | chr1_1:27959268-27959287 | None:intergenic | 45.0% | |
| GACTCTCACCAGCAAATCAA+AGG | + | chr1_1:27959348-27959367 | Msa0016820:CDS | 45.0% | |
| AGGGCAATCTTGATACCATG+TGG | + | chr1_1:27959368-27959387 | Msa0016820:CDS | 45.0% | |
| GCTTTGATTGGCGAGCAATT+TGG | + | chr1_1:27959511-27959530 | Msa0016820:CDS | 45.0% | |
| AGCAGCAAATGAGTCTAACC+AGG | + | chr1_1:27959609-27959628 | Msa0016820:CDS | 45.0% | |
| TCTCACGCATACCATTGTCT+AGG | - | chr1_1:27959732-27959751 | None:intergenic | 45.0% | |
| ! | TTCACATTGTGAAGGCGTGA+AGG | - | chr1_1:27959780-27959799 | None:intergenic | 45.0% |
| TTCACGCCTTCACAATGTGA+AGG | + | chr1_1:27959779-27959798 | Msa0016820:intron | 45.0% | |
| ! | AAAGTCTGGTTTATGTCCCC+AGG | + | chr1_1:27960160-27960179 | Msa0016820:intron | 45.0% |
| ATAAGTTCAGAAGAGGGGAG+GGG | - | chr1_1:27960193-27960212 | None:intergenic | 45.0% | |
| CAATAAGTTCAGAAGAGGGG+AGG | - | chr1_1:27960195-27960214 | None:intergenic | 45.0% | |
| CGGCAATAAGTTCAGAAGAG+GGG | - | chr1_1:27960198-27960217 | None:intergenic | 45.0% | |
| GAAGAAATGACAGGACAGGA+GGG | - | chr1_1:27960283-27960302 | None:intergenic | 45.0% | |
| AGAAGAAATGACAGGACAGG+AGG | - | chr1_1:27960284-27960303 | None:intergenic | 45.0% | |
| ! | AGCGAAGATGAAGCCCTTTT+GGG | - | chr1_1:27960309-27960328 | None:intergenic | 45.0% |
| !!! | TCCTATGAGTTTTGAGGTGG+CGG | - | chr1_1:27960560-27960579 | None:intergenic | 45.0% |
| !! | AGATGAGCATTGGAAGGAAG+TGG | + | chr1_1:27960623-27960642 | Msa0016820:intron | 45.0% |
| AATGCACTTCCGTATGGTTG+AGG | + | chr1_1:27960872-27960891 | Msa0016820:three_prime_UTR | 45.0% | |
| ! | TGACGGACAGTGTCAAGAAT+TGG | - | chr1_1:27960958-27960977 | None:intergenic | 45.0% |
| ! | ACAAGCCGAGTATTGTAGAG+TGG | + | chr1_1:27961267-27961286 | Msa0016820:three_prime_UTR | 45.0% |
| !!! | ATTCTTTAAAAAAAAAAAAA+AGG | - | chr1_1:27959425-27959444 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTAAAGAATATA+TGG | + | chr1_1:27959428-27959447 | Msa0016820:intron | 5.0% |
| !!! | TTTTTTTTTAAAGAATATAT+GGG | + | chr1_1:27959429-27959448 | Msa0016820:intron | 5.0% |
| AATCGTTGAAGGCTCTACCG+CGG | + | chr1_1:27957498-27957517 | Msa0016820:CDS | 50.0% | |
| !! | CCTAAACAAGGTGCTGCTTG+GGG | + | chr1_1:27957628-27957647 | Msa0016820:CDS | 50.0% |
| TTGGGGAACCACTCTTCGTA+AGG | + | chr1_1:27957645-27957664 | Msa0016820:CDS | 50.0% | |
| CAGAGAGAGAGAGAGAGAGT+TGG | + | chr1_1:27958189-27958208 | Msa0016820:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGTTG+GGG | + | chr1_1:27958191-27958210 | Msa0016820:intron | 50.0% | |
| TGGTCGAAACCAGACTTAGG+TGG | + | chr1_1:27958237-27958256 | Msa0016820:intron | 50.0% | |
| ATGCCCAAACCACCTAAGTC+TGG | - | chr1_1:27958249-27958268 | None:intergenic | 50.0% | |
| ! | CTTAGGTGGTTTGGGCATGT+AGG | + | chr1_1:27958251-27958270 | Msa0016820:intron | 50.0% |
| GGTCAAATAGCTAGACGGAG+AGG | + | chr1_1:27958323-27958342 | Msa0016820:intron | 50.0% | |
| CGGCGTTTGATCCATGTAGT+GGG | + | chr1_1:27958427-27958446 | Msa0016820:intron | 50.0% | |
| ! | CACTCGGGATCTTCCCATTT+TGG | - | chr1_1:27959310-27959329 | None:intergenic | 50.0% |
| TTTCCTCCATTGGCACACTC+GGG | - | chr1_1:27959325-27959344 | None:intergenic | 50.0% | |
| CTTTCCTCCATTGGCACACT+CGG | - | chr1_1:27959326-27959345 | None:intergenic | 50.0% | |
| AGTGTGCCAATGGAGGAAAG+TGG | + | chr1_1:27959326-27959345 | Msa0016820:CDS | 50.0% | |
| GAGAGTCCACTTTCCTCCAT+TGG | - | chr1_1:27959335-27959354 | None:intergenic | 50.0% | |
| CGAGCAATTTGGAGACACTG+AGG | + | chr1_1:27959522-27959541 | Msa0016820:CDS | 50.0% | |
| GGAGACACTGAGGACATTTG+CGG | + | chr1_1:27959532-27959551 | Msa0016820:CDS | 50.0% | |
| ACGAAAGTTTGTCCTGCCAC+TGG | - | chr1_1:27959576-27959595 | None:intergenic | 50.0% | |
| GGCAGGACAAACTTTCGTTG+TGG | + | chr1_1:27959578-27959597 | Msa0016820:CDS | 50.0% | |
| !! | CAATGTGAAGGAAGTGTCGG+TGG | + | chr1_1:27959791-27959810 | Msa0016820:intron | 50.0% |
| !! | GAAGTGTCGGTGGTGAATGT+TGG | + | chr1_1:27959801-27959820 | Msa0016820:intron | 50.0% |
| TAAGTTCAGAAGAGGGGAGG+GGG | - | chr1_1:27960192-27960211 | None:intergenic | 50.0% | |
| ! | GAGCGAAGATGAAGCCCTTT+TGG | - | chr1_1:27960310-27960329 | None:intergenic | 50.0% |
| TCTTCGCTCCTCATCTTGTG+CGG | + | chr1_1:27960321-27960340 | Msa0016820:intron | 50.0% | |
| TCAGAAAGCCGCACAAGATG+AGG | - | chr1_1:27960332-27960351 | None:intergenic | 50.0% | |
| CATCTTGTGCGGCTTTCTGA+TGG | + | chr1_1:27960332-27960351 | Msa0016820:intron | 50.0% | |
| !!! | CCTATGAGTTTTGAGGTGGC+GGG | - | chr1_1:27960559-27960578 | None:intergenic | 50.0% |
| !! | GAGCATTGGAAGGAAGTGGA+AGG | + | chr1_1:27960627-27960646 | Msa0016820:CDS | 50.0% |
| CAGGAAGATGCTAAAACCCG+AGG | + | chr1_1:27960762-27960781 | Msa0016820:intron | 50.0% | |
| TGCTAAAACCCGAGGTGCAA+AGG | + | chr1_1:27960770-27960789 | Msa0016820:CDS | 50.0% | |
| TGTATCGAGCCTTTGCACCT+CGG | - | chr1_1:27960782-27960801 | None:intergenic | 50.0% | |
| ! | GTGCTGGCAATGCTGTTGTA+TGG | + | chr1_1:27960837-27960856 | Msa0016820:three_prime_UTR | 50.0% |
| GCGGTAGAGCCTTCAACGAT+TGG | - | chr1_1:27957499-27957518 | None:intergenic | 55.0% | |
| ! | CCCCAAGCAGCACCTTGTTT+AGG | - | chr1_1:27957631-27957650 | None:intergenic | 55.0% |
| ! | GGTGGTTTGGGCATGTAGGT+AGG | + | chr1_1:27958255-27958274 | Msa0016820:intron | 55.0% |
| CTAGACGGAGAGGAAGACCT+AGG | + | chr1_1:27958333-27958352 | Msa0016820:intron | 55.0% | |
| GCGGCGTTTGATCCATGTAG+TGG | + | chr1_1:27958426-27958445 | Msa0016820:intron | 55.0% | |
| ACTAGGTGGGGTCAGCTACT+TGG | - | chr1_1:27958708-27958727 | None:intergenic | 55.0% | |
| AAGTAGCTGACCCCACCTAG+TGG | + | chr1_1:27958707-27958726 | Msa0016820:intron | 55.0% | |
| AGTAGCTGACCCCACCTAGT+GGG | + | chr1_1:27958708-27958727 | Msa0016820:intron | 55.0% | |
| TGACCCCACCTAGTGGGATA+AGG | + | chr1_1:27958714-27958733 | Msa0016820:intron | 55.0% | |
| TTCAAGCCCAGCAAGTTGCC+TGG | + | chr1_1:27959247-27959266 | Msa0016820:CDS | 55.0% | |
| ! | GCATTGCCAGGCAACTTGCT+GGG | - | chr1_1:27959256-27959275 | None:intergenic | 55.0% |
| AGCATTGCCAGGCAACTTGC+TGG | - | chr1_1:27959257-27959276 | None:intergenic | 55.0% | |
| GAAGATCCCGAGTGTGCCAA+TGG | + | chr1_1:27959316-27959335 | Msa0016820:CDS | 55.0% | |
| TAGTTGCGAGTGTACGCCAG+TGG | + | chr1_1:27959557-27959576 | Msa0016820:CDS | 55.0% | |
| GTAGCTATGCCGCTACTCGA+TGG | + | chr1_1:27960517-27960536 | Msa0016820:intron | 55.0% | |
| CCCGCCACCTCAAAACTCAT+AGG | + | chr1_1:27960556-27960575 | Msa0016820:intron | 55.0% | |
| GTATCGAGCCTTTGCACCTC+GGG | - | chr1_1:27960781-27960800 | None:intergenic | 55.0% | |
| ! | GCATTTTTCCGCGCTTGTGC+TGG | + | chr1_1:27960821-27960840 | Msa0016820:three_prime_UTR | 55.0% |
| TTTAGCCCTGTCTCCGGTGC+CGG | - | chr1_1:27957559-27957578 | None:intergenic | 60.0% | |
| CCGCCTTATCCCACTAGGTG+GGG | - | chr1_1:27958720-27958739 | None:intergenic | 60.0% | |
| CCCCACCTAGTGGGATAAGG+CGG | + | chr1_1:27958717-27958736 | Msa0016820:intron | 60.0% | |
| GCCGCCTTATCCCACTAGGT+GGG | - | chr1_1:27958721-27958740 | None:intergenic | 60.0% | |
| AGCCGCCTTATCCCACTAGG+TGG | - | chr1_1:27958722-27958741 | None:intergenic | 60.0% | |
| CCAAGCCGCCTTATCCCACT+AGG | - | chr1_1:27958725-27958744 | None:intergenic | 60.0% | |
| CCTAGTGGGATAAGGCGGCT+TGG | + | chr1_1:27958722-27958741 | Msa0016820:intron | 60.0% | |
| ! | AGTGGGATAAGGCGGCTTGG+TGG | + | chr1_1:27958725-27958744 | Msa0016820:intron | 60.0% |
| GATCCCGAGTGTGCCAATGG+AGG | + | chr1_1:27959319-27959338 | Msa0016820:CDS | 60.0% | |
| CAGCATTGCCAGCACAAGCG+CGG | - | chr1_1:27960832-27960851 | None:intergenic | 60.0% | |
| TGAAGGCTCTACCGCGGCAG+AGG | + | chr1_1:27957504-27957523 | Msa0016820:CDS | 65.0% | |
| CTCTACCGCGGCAGAGGAAG+TGG | + | chr1_1:27957510-27957529 | Msa0016820:CDS | 65.0% | |
| TACCGCGGCAGAGGAAGTGG+CGG | + | chr1_1:27957513-27957532 | Msa0016820:CDS | 65.0% | |
| TGCGAGTGTACGCCAGTGGC+AGG | + | chr1_1:27959561-27959580 | Msa0016820:CDS | 65.0% | |
| GGAAGTGGCGGCGGCTGTTC+CGG | + | chr1_1:27957525-27957544 | Msa0016820:CDS | 70.0% | |
| GGCTGTTCCGGTACCCGCAC+CGG | + | chr1_1:27957537-27957556 | Msa0016820:CDS | 70.0% | |
| ! | AGGGGAGGGGGCGTAAGCCT+GGG | - | chr1_1:27960180-27960199 | None:intergenic | 70.0% |
| CGCCGCCACTTCCTCTGCCG+CGG | - | chr1_1:27957518-27957537 | None:intergenic | 75.0% | |
| CGCGGCAGAGGAAGTGGCGG+CGG | + | chr1_1:27957516-27957535 | Msa0016820:CDS | 75.0% | |
| ! | TCCGGTACCCGCACCGGCAC+CGG | + | chr1_1:27957543-27957562 | Msa0016820:CDS | 75.0% |
| !! | TCCGGTGCCGGTGCGGGTAC+CGG | - | chr1_1:27957547-27957566 | None:intergenic | 75.0% |
| !! | CCTGTCTCCGGTGCCGGTGC+GGG | - | chr1_1:27957553-27957572 | None:intergenic | 75.0% |
| !! | CCCTGTCTCCGGTGCCGGTG+CGG | - | chr1_1:27957554-27957573 | None:intergenic | 75.0% |
| ! | CCGCACCGGCACCGGAGACA+GGG | + | chr1_1:27957551-27957570 | Msa0016820:CDS | 75.0% |
| ! | GGGGAGGGGGCGTAAGCCTG+GGG | - | chr1_1:27960179-27960198 | None:intergenic | 75.0% |
| ! | GAGGGGAGGGGGCGTAAGCC+TGG | - | chr1_1:27960181-27960200 | None:intergenic | 75.0% |
| !! | CCCGCACCGGCACCGGAGAC+AGG | + | chr1_1:27957550-27957569 | Msa0016820:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27957449 | 27961291 | 27957449 | ID=Msa0016820;Name=Msa0016820 |
| chr1_1 | mRNA | 27957449 | 27961291 | 27957449 | ID=Msa0016820-mRNA-1;Parent=Msa0016820;Name=Msa0016820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=32|1|1|1|0.8|0.66|6|371|208 |
| chr1_1 | exon | 27957449 | 27957701 | 27957449 | ID=Msa0016820-mRNA-1:exon:9352;Parent=Msa0016820-mRNA-1 |
| chr1_1 | exon | 27959231 | 27959399 | 27959231 | ID=Msa0016820-mRNA-1:exon:9353;Parent=Msa0016820-mRNA-1 |
| chr1_1 | exon | 27959505 | 27959630 | 27959505 | ID=Msa0016820-mRNA-1:exon:9354;Parent=Msa0016820-mRNA-1 |
| chr1_1 | exon | 27960625 | 27960690 | 27960625 | ID=Msa0016820-mRNA-1:exon:9355;Parent=Msa0016820-mRNA-1 |
| chr1_1 | exon | 27960765 | 27961131 | 27960765 | ID=Msa0016820-mRNA-1:exon:9356;Parent=Msa0016820-mRNA-1 |
| chr1_1 | exon | 27961243 | 27961291 | 27961243 | ID=Msa0016820-mRNA-1:exon:9357;Parent=Msa0016820-mRNA-1 |
| chr1_1 | five_prime_UTR | 27957449 | 27957480 | 27957449 | ID=Msa0016820-mRNA-1:five_prime_utr;Parent=Msa0016820-mRNA-1 |
| chr1_1 | CDS | 27957481 | 27957701 | 27957481 | ID=Msa0016820-mRNA-1:cds;Parent=Msa0016820-mRNA-1 |
| chr1_1 | CDS | 27959231 | 27959399 | 27959231 | ID=Msa0016820-mRNA-1:cds;Parent=Msa0016820-mRNA-1 |
| chr1_1 | CDS | 27959505 | 27959630 | 27959505 | ID=Msa0016820-mRNA-1:cds;Parent=Msa0016820-mRNA-1 |
| chr1_1 | CDS | 27960625 | 27960690 | 27960625 | ID=Msa0016820-mRNA-1:cds;Parent=Msa0016820-mRNA-1 |
| chr1_1 | CDS | 27960765 | 27960809 | 27960765 | ID=Msa0016820-mRNA-1:cds;Parent=Msa0016820-mRNA-1 |
| chr1_1 | three_prime_UTR | 27960810 | 27961131 | 27960810 | ID=Msa0016820-mRNA-1:three_prime_utr;Parent=Msa0016820-mRNA-1 |
| chr1_1 | three_prime_UTR | 27961243 | 27961291 | 27961243 | ID=Msa0016820-mRNA-1:three_prime_utr;Parent=Msa0016820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
