AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0786650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786650 MtrunA17_Chr5g0442931 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0786650 MtrunA17_Chr5g0442901 100.000 178 0 0 1 178 1 178 2.99e-133 370
Msa0786650 MtrunA17_Chr2g0328821 100.000 178 0 0 1 178 17 194 3.33e-133 370
Msa0786650 MtrunA17_Chr3g0095911 94.382 178 10 0 1 178 1 178 2.58e-125 350
Msa0786650 MtrunA17_Chr2g0286131 62.353 85 32 0 92 176 1 85 2.93e-34 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786650 AT2G34480.1 90.230 174 17 0 5 178 5 178 3.01e-119 335
Msa0786650 AT2G34480.2 90.230 174 17 0 5 178 44 217 3.24e-119 336
Msa0786650 AT1G29965.1 87.079 178 23 0 1 178 1 178 1.24e-117 330
Msa0786650 AT3G14600.1 87.079 178 23 0 1 178 1 178 4.20e-117 329
Msa0786650 AT1G29970.2 89.017 173 19 0 6 178 140 312 1.08e-114 328

Find 73 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGAGACTTACCAGAATT+TGG 0.183241 5_2:+72217408 None:intergenic
CACCAGAGGGAACTTGATTT+TGG 0.187302 5_2:+72216090 None:intergenic
CATAAACAGGTTGGGCTTCT+TGG 0.201042 5_2:+72216018 None:intergenic
AGATTAAGAACTATGGAATT+TGG 0.243479 5_2:-72216312 Msa0786650:CDS
GAAAAGCAATGGACAAGTTT+TGG 0.246012 5_2:-72217260 Msa0786650:CDS
GTTGGGCTTCTTGGCTTTGT+AGG 0.248408 5_2:+72216027 None:intergenic
AGTGGAGTTGCTTGATTTAT+CGG 0.302374 5_2:-72215971 Msa0786650:three_prime_UTR
GTAATTGTGTCTAGCCTTGT+AGG 0.315232 5_2:-72215637 Msa0786650:three_prime_UTR
GTGCACTAATTGCTGCAAAA+AGG 0.333672 5_2:-72215725 Msa0786650:three_prime_UTR
AGATTTATCGTATGAAGCTT+TGG 0.340515 5_2:-72217456 Msa0786650:CDS
GACTTACCAGAATTTGGATT+TGG 0.342784 5_2:+72217414 None:intergenic
GCTCATTCGGTACGAGCATC+TGG 0.342905 5_2:+72215696 None:intergenic
GATTTATCGTATGAAGCTTT+GGG 0.356570 5_2:-72217455 Msa0786650:CDS
CCTACCAAGATTAAGAACTA+TGG 0.366976 5_2:-72216319 Msa0786650:CDS
TTCGTGCCAAATCCAAATTC+TGG 0.381119 5_2:-72217420 Msa0786650:intron
CGATCACTTTGTTTCAAAGT+AGG 0.382486 5_2:-72215772 Msa0786650:three_prime_UTR
AATTCCATAGTTCTTAATCT+TGG 0.403701 5_2:+72216315 None:intergenic
ATTCACTGAATCACATAAAC+AGG 0.404006 5_2:+72216005 None:intergenic
TGGTGGCTGTCTTAATGATC+TGG 0.405710 5_2:+72216161 None:intergenic
TCCCTGCTAATCTGTGCAAA+AGG 0.413261 5_2:-72216138 Msa0786650:CDS
AATCGCAAACTATGTCTTGA+TGG 0.433537 5_2:+72215897 None:intergenic
AGCTTCATACGATAAATCTT+AGG 0.433968 5_2:+72217460 None:intergenic
TACCGTGATACTACTCTAAA+CGG 0.441043 5_2:-72216244 Msa0786650:CDS
CGCTGGTTGTAGCTGTCTAA+AGG 0.442197 5_2:+72217695 None:intergenic
GGATTTGGCACGAACCTCAT+TGG 0.442665 5_2:+72217429 None:intergenic
TGGCATCTCGTCACAGGGTC+AGG 0.450175 5_2:-72216195 Msa0786650:CDS
GATCACTTTGTTTCAAAGTA+GGG 0.457736 5_2:-72215771 Msa0786650:three_prime_UTR
TTTCTTAAGGAAGTTGAAGA+AGG 0.460521 5_2:-72217287 Msa0786650:CDS
CTCTGGTGTACAAGAAGATT+AGG 0.461451 5_2:-72216075 Msa0786650:CDS
ATTGTTGTAGGTATTTCTTA+AGG 0.471637 5_2:-72217300 Msa0786650:intron
ATCGCAAAACCTAGCTCATT+CGG 0.473663 5_2:+72215683 None:intergenic
TTGATGTACTGTTATAAGCT+CGG 0.476925 5_2:-72215807 Msa0786650:three_prime_UTR
CTGAATCACATAAACAGGTT+GGG 0.486125 5_2:+72216010 None:intergenic
CCCTTCCGACAACCTGGTAC+TGG 0.493497 5_2:+72217509 None:intergenic
AGATTGAGAACCGCCGCCGC+TGG 0.496335 5_2:+72217678 None:intergenic
TTGCGTTATCAGAGTCGTAC+TGG 0.505845 5_2:-72216289 Msa0786650:CDS
ATAAATCAAGCAACTCCACT+AGG 0.511786 5_2:+72215974 None:intergenic
CCCTGCTAATCTGTGCAAAA+GGG 0.518057 5_2:-72216137 Msa0786650:CDS
ACGAGATGGCATCTCGTCAC+AGG 0.518297 5_2:-72216201 Msa0786650:CDS
GGGAATGAACAAAGCTGTGT+TGG 0.521610 5_2:-72215659 Msa0786650:three_prime_UTR
AAGGGCTCTTCCCACCGAAA+AGG 0.526516 5_2:-72217491 Msa0786650:CDS
ACAGCTACAACCAGCGGCGG+CGG 0.529482 5_2:-72217688 Msa0786650:five_prime_UTR
TTTCACCAGTACCAGGTTGT+CGG 0.538716 5_2:-72217514 Msa0786650:CDS
CCATAGTTCTTAATCTTGGT+AGG 0.548600 5_2:+72216319 None:intergenic
GAAACAGTTTCACCAGTACC+AGG 0.549157 5_2:-72217521 Msa0786650:intron
TTCCAAAATCAAGTTCCCTC+TGG 0.549470 5_2:-72216092 Msa0786650:CDS
AAGAAGGTTAAGAAAAGCAA+TGG 0.552641 5_2:-72217271 Msa0786650:CDS
TCCTAGTTTGTTATTTACTG+AGG 0.554608 5_2:-72215873 Msa0786650:three_prime_UTR
CCAGTACCAGGTTGTCGGAA+GGG 0.555213 5_2:-72217509 Msa0786650:CDS
TTTGCACAGATTAGCAGGGA+TGG 0.557763 5_2:+72216141 None:intergenic
ACCAGTACCAGGTTGTCGGA+AGG 0.560011 5_2:-72217510 Msa0786650:CDS
ACTGAATCACATAAACAGGT+TGG 0.563649 5_2:+72216009 None:intergenic
GTCTTAATGATCTGGATGCA+AGG 0.568738 5_2:+72216169 None:intergenic
GCTGGTTGTAGCTGTCTAAA+GGG 0.570697 5_2:+72217696 None:intergenic
ATGCTCGTACCGAATGAGCT+AGG 0.585439 5_2:-72215692 Msa0786650:three_prime_UTR
GCACAGATTAGCAGGGATGG+TGG 0.588299 5_2:+72216144 None:intergenic
GAAGAGCCCTTCCGACAACC+TGG 0.589985 5_2:+72217503 None:intergenic
AGTGAATCACATTTCCCTAG+TGG 0.598919 5_2:-72215989 Msa0786650:three_prime_UTR
TGGTTATCATAATATGTACA+AGG 0.601140 5_2:-72216269 Msa0786650:CDS
TAAATCAAGCAACTCCACTA+GGG 0.601995 5_2:+72215975 None:intergenic
AGAAGATTAGGCCACCAACT+AGG 0.603627 5_2:-72216063 Msa0786650:CDS
AATAAATAACTGCATAACAA+AGG 0.604796 5_2:+72215839 None:intergenic
TCCTCAGTAAATAACAAACT+AGG 0.604956 5_2:+72215872 None:intergenic
CGAGATGGCATCTCGTCACA+GGG 0.619853 5_2:-72216200 Msa0786650:CDS
GTCAGAATAAACAACCTACA+AGG 0.627675 5_2:+72215623 None:intergenic
GAAGCTTTGGGCAACCAATG+AGG 0.631227 5_2:-72217443 Msa0786650:CDS
CTAATCTTCTTGTACACCAG+AGG 0.631597 5_2:+72216076 None:intergenic
TAATCTTCTTGTACACCAGA+GGG 0.642722 5_2:+72216077 None:intergenic
GGAGACAATGTACAACGAGA+TGG 0.663821 5_2:-72216215 Msa0786650:CDS
CGCCGTTTAGAGTAGTATCA+CGG 0.671590 5_2:+72216242 None:intergenic
TACTACTCTAAACGGCGCTG+TGG 0.679213 5_2:-72216236 Msa0786650:CDS
TAGACAGCTACAACCAGCGG+CGG 0.713347 5_2:-72217691 Msa0786650:five_prime_UTR
CTTTAGACAGCTACAACCAG+CGG 0.719190 5_2:-72217694 Msa0786650:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATGTTAATTGTTGT+AGG - chr5_2:72216011-72216030 Msa0786650:exon 15.0%
!! TTAATAATGTTAATTGTTGT+AGG - chr5_2:72216011-72216030 Msa0786650:exon 15.0%
!! AGTTGTTAAATGAAATTTGA+TGG - chr5_2:72216118-72216137 Msa0786650:CDS 20.0%
!! TTAAATGAAATTTGATGGAA+GGG - chr5_2:72216123-72216142 Msa0786650:CDS 20.0%
!! TGAATTGAAAATATATCACT+TGG - chr5_2:72216426-72216445 Msa0786650:intron 20.0%
!! AAAGCTTAATTATTTGCATA+AGG + chr5_2:72216491-72216510 None:intergenic 20.0%
!! CATTTATTCTAGTAAAAGTA+AGG - chr5_2:72216858-72216877 Msa0786650:intron 20.0%
!! AATAAATAACTGCATAACAA+AGG + chr5_2:72217487-72217506 None:intergenic 20.0%
!! AGTTGTTAAATGAAATTTGA+TGG - chr5_2:72216118-72216137 Msa0786650:CDS 20.0%
!! TTAAATGAAATTTGATGGAA+GGG - chr5_2:72216123-72216142 Msa0786650:CDS 20.0%
!! TGAATTGAAAATATATCACT+TGG - chr5_2:72216426-72216445 Msa0786650:intron 20.0%
!! AAAGCTTAATTATTTGCATA+AGG + chr5_2:72216491-72216510 None:intergenic 20.0%
!! CATTTATTCTAGTAAAAGTA+AGG - chr5_2:72216858-72216877 Msa0786650:intron 20.0%
!! AATAAATAACTGCATAACAA+AGG + chr5_2:72217487-72217506 None:intergenic 20.0%
! AAAAAAAAATGAAGGAAGGA+AGG + chr5_2:72215745-72215764 None:intergenic 25.0%
! ACACAAAAAAAAATGAAGGA+AGG + chr5_2:72215749-72215768 None:intergenic 25.0%
! ACACACACAAAAAAAAATGA+AGG + chr5_2:72215753-72215772 None:intergenic 25.0%
! ATTGTTGTAGGTATTTCTTA+AGG - chr5_2:72216023-72216042 Msa0786650:CDS 25.0%
! GTTAAATGAAATTTGATGGA+AGG - chr5_2:72216122-72216141 Msa0786650:CDS 25.0%
! CACCTTAACATTAGATTTAA+GGG + chr5_2:72216378-72216397 None:intergenic 25.0%
! TCACCTTAACATTAGATTTA+AGG + chr5_2:72216379-72216398 None:intergenic 25.0%
! AATCTAATGTTAAGGTGAAA+TGG - chr5_2:72216381-72216400 Msa0786650:intron 25.0%
! ATCTAATGTTAAGGTGAAAT+GGG - chr5_2:72216382-72216401 Msa0786650:intron 25.0%
! GGGAAAAAATTGTGTAAAAT+TGG - chr5_2:72216402-72216421 Msa0786650:intron 25.0%
! AAAGATAAGTCAATACAAAC+AGG + chr5_2:72216452-72216471 None:intergenic 25.0%
! AAGTACTAACTACTTTCATA+TGG + chr5_2:72216589-72216608 None:intergenic 25.0%
!!! GTTTTGATTTAAGACTGATT+TGG - chr5_2:72216749-72216768 Msa0786650:intron 25.0%
! TAATAACTAAAGCTAACACA+TGG + chr5_2:72216908-72216927 None:intergenic 25.0%
! AAAGATCTGCAAACAAAAAA+AGG + chr5_2:72216975-72216994 None:intergenic 25.0%
! AATTCCATAGTTCTTAATCT+TGG + chr5_2:72217011-72217030 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG - chr5_2:72217011-72217030 Msa0786650:intron 25.0%
! TGGTTATCATAATATGTACA+AGG - chr5_2:72217054-72217073 Msa0786650:intron 25.0%
! AAAAAAAAATGAAGGAAGGA+AGG + chr5_2:72215745-72215764 None:intergenic 25.0%
! ACACAAAAAAAAATGAAGGA+AGG + chr5_2:72215749-72215768 None:intergenic 25.0%
! ACACACACAAAAAAAAATGA+AGG + chr5_2:72215753-72215772 None:intergenic 25.0%
! ATTGTTGTAGGTATTTCTTA+AGG - chr5_2:72216023-72216042 Msa0786650:CDS 25.0%
! GTTAAATGAAATTTGATGGA+AGG - chr5_2:72216122-72216141 Msa0786650:CDS 25.0%
! CACCTTAACATTAGATTTAA+GGG + chr5_2:72216378-72216397 None:intergenic 25.0%
! TCACCTTAACATTAGATTTA+AGG + chr5_2:72216379-72216398 None:intergenic 25.0%
! AATCTAATGTTAAGGTGAAA+TGG - chr5_2:72216381-72216400 Msa0786650:intron 25.0%
! ATCTAATGTTAAGGTGAAAT+GGG - chr5_2:72216382-72216401 Msa0786650:intron 25.0%
! GGGAAAAAATTGTGTAAAAT+TGG - chr5_2:72216402-72216421 Msa0786650:intron 25.0%
! AAAGATAAGTCAATACAAAC+AGG + chr5_2:72216452-72216471 None:intergenic 25.0%
! AAGTACTAACTACTTTCATA+TGG + chr5_2:72216589-72216608 None:intergenic 25.0%
!!! GTTTTGATTTAAGACTGATT+TGG - chr5_2:72216749-72216768 Msa0786650:intron 25.0%
! TAATAACTAAAGCTAACACA+TGG + chr5_2:72216908-72216927 None:intergenic 25.0%
! AAAGATCTGCAAACAAAAAA+AGG + chr5_2:72216975-72216994 None:intergenic 25.0%
! AATTCCATAGTTCTTAATCT+TGG + chr5_2:72217011-72217030 None:intergenic 25.0%
! AGATTAAGAACTATGGAATT+TGG - chr5_2:72217011-72217030 Msa0786650:intron 25.0%
! TGGTTATCATAATATGTACA+AGG - chr5_2:72217054-72217073 Msa0786650:intron 25.0%
AGCTTCATACGATAAATCTT+AGG + chr5_2:72215866-72215885 None:intergenic 30.0%
AGATTTATCGTATGAAGCTT+TGG - chr5_2:72215867-72215886 Msa0786650:three_prime_UTR 30.0%
GATTTATCGTATGAAGCTTT+GGG - chr5_2:72215868-72215887 Msa0786650:three_prime_UTR 30.0%
TTTCTTAAGGAAGTTGAAGA+AGG - chr5_2:72216036-72216055 Msa0786650:CDS 30.0%
AAGAAGGTTAAGAAAAGCAA+TGG - chr5_2:72216052-72216071 Msa0786650:CDS 30.0%
! CATTAAGTTGTGTAACAAAC+TGG - chr5_2:72216352-72216371 Msa0786650:intron 30.0%
TATTATTGATCAGCTTGTCA+AGG - chr5_2:72216515-72216534 Msa0786650:intron 30.0%
AGTAGTTAGTACTTGTACTT+TGG - chr5_2:72216595-72216614 Msa0786650:intron 30.0%
TTAGTACTTGTACTTTGGTT+GGG - chr5_2:72216600-72216619 Msa0786650:intron 30.0%
! TTCTGTTTGAGATTATTGCT+GGG - chr5_2:72216660-72216679 Msa0786650:intron 30.0%
!! GATTTAAGACTGATTTGGAA+AGG - chr5_2:72216754-72216773 Msa0786650:intron 30.0%
AAAGTAAGGCTAATTGAACT+TGG - chr5_2:72216872-72216891 Msa0786650:intron 30.0%
TAACTTCAATTGCAGTTTGT+TGG - chr5_2:72216931-72216950 Msa0786650:intron 30.0%
ATTCACTGAATCACATAAAC+AGG + chr5_2:72217321-72217340 None:intergenic 30.0%
!! TCCTAGTTTGTTATTTACTG+AGG - chr5_2:72217450-72217469 Msa0786650:CDS 30.0%
TCCTCAGTAAATAACAAACT+AGG + chr5_2:72217454-72217473 None:intergenic 30.0%
TTGATGTACTGTTATAAGCT+CGG - chr5_2:72217516-72217535 Msa0786650:CDS 30.0%
! GATCACTTTGTTTCAAAGTA+GGG - chr5_2:72217552-72217571 Msa0786650:intron 30.0%
AGCTTCATACGATAAATCTT+AGG + chr5_2:72215866-72215885 None:intergenic 30.0%
AGATTTATCGTATGAAGCTT+TGG - chr5_2:72215867-72215886 Msa0786650:three_prime_UTR 30.0%
GATTTATCGTATGAAGCTTT+GGG - chr5_2:72215868-72215887 Msa0786650:three_prime_UTR 30.0%
TTTCTTAAGGAAGTTGAAGA+AGG - chr5_2:72216036-72216055 Msa0786650:CDS 30.0%
AAGAAGGTTAAGAAAAGCAA+TGG - chr5_2:72216052-72216071 Msa0786650:CDS 30.0%
! CATTAAGTTGTGTAACAAAC+TGG - chr5_2:72216352-72216371 Msa0786650:intron 30.0%
TATTATTGATCAGCTTGTCA+AGG - chr5_2:72216515-72216534 Msa0786650:intron 30.0%
AGTAGTTAGTACTTGTACTT+TGG - chr5_2:72216595-72216614 Msa0786650:intron 30.0%
TTAGTACTTGTACTTTGGTT+GGG - chr5_2:72216600-72216619 Msa0786650:intron 30.0%
! TTCTGTTTGAGATTATTGCT+GGG - chr5_2:72216660-72216679 Msa0786650:intron 30.0%
!! GATTTAAGACTGATTTGGAA+AGG - chr5_2:72216754-72216773 Msa0786650:intron 30.0%
AAAGTAAGGCTAATTGAACT+TGG - chr5_2:72216872-72216891 Msa0786650:intron 30.0%
TAACTTCAATTGCAGTTTGT+TGG - chr5_2:72216931-72216950 Msa0786650:intron 30.0%
ATTCACTGAATCACATAAAC+AGG + chr5_2:72217321-72217340 None:intergenic 30.0%
!! TCCTAGTTTGTTATTTACTG+AGG - chr5_2:72217450-72217469 Msa0786650:CDS 30.0%
TCCTCAGTAAATAACAAACT+AGG + chr5_2:72217454-72217473 None:intergenic 30.0%
TTGATGTACTGTTATAAGCT+CGG - chr5_2:72217516-72217535 Msa0786650:CDS 30.0%
! GATCACTTTGTTTCAAAGTA+GGG - chr5_2:72217552-72217571 Msa0786650:intron 30.0%
ATCTGTGTTTGTCGCAAAAA+TGG - chr5_2:72215670-72215689 Msa0786650:three_prime_UTR 35.0%
GAAGGAAATGAAAGGATTAG+TGG + chr5_2:72215727-72215746 None:intergenic 35.0%
TGTGTGTGTGAATCTTAACA+CGG - chr5_2:72215764-72215783 Msa0786650:three_prime_UTR 35.0%
! CTTAGGATGTTCATCCTTTT+CGG + chr5_2:72215849-72215868 None:intergenic 35.0%
GACTTACCAGAATTTGGATT+TGG + chr5_2:72215912-72215931 None:intergenic 35.0%
ATCAGAGACTTACCAGAATT+TGG + chr5_2:72215918-72215937 None:intergenic 35.0%
! GAAAAGCAATGGACAAGTTT+TGG - chr5_2:72216063-72216082 Msa0786650:CDS 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG - chr5_2:72216075-72216094 Msa0786650:CDS 35.0%
GATTCGTAGAATCACTTCTT+TGG - chr5_2:72216209-72216228 Msa0786650:CDS 35.0%
GGCCCTTAAATCTAATGTTA+AGG - chr5_2:72216373-72216392 Msa0786650:intron 35.0%
GTTAGTACTTGTACTTTGGT+TGG - chr5_2:72216599-72216618 Msa0786650:intron 35.0%
TAGTACTTGTACTTTGGTTG+GGG - chr5_2:72216601-72216620 Msa0786650:intron 35.0%
! GTTCTGTTTGAGATTATTGC+TGG - chr5_2:72216659-72216678 Msa0786650:intron 35.0%
!!! AACTTGTTTTGAGAAGTCAC+TGG - chr5_2:72216705-72216724 Msa0786650:intron 35.0%
TCAACTATCAAAGTAGTCAC+TGG + chr5_2:72216793-72216812 None:intergenic 35.0%
TTGTTGGACATAGAGGTTTA+TGG - chr5_2:72216947-72216966 Msa0786650:intron 35.0%
CCATAGTTCTTAATCTTGGT+AGG + chr5_2:72217007-72217026 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG - chr5_2:72217004-72217023 Msa0786650:intron 35.0%
TACCGTGATACTACTCTAAA+CGG - chr5_2:72217079-72217098 Msa0786650:intron 35.0%
TAATCTTCTTGTACACCAGA+GGG + chr5_2:72217249-72217268 None:intergenic 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG + chr5_2:72217288-72217307 None:intergenic 35.0%
CTGAATCACATAAACAGGTT+GGG + chr5_2:72217316-72217335 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG + chr5_2:72217317-72217336 None:intergenic 35.0%
TAAATCAAGCAACTCCACTA+GGG + chr5_2:72217351-72217370 None:intergenic 35.0%
ATAAATCAAGCAACTCCACT+AGG + chr5_2:72217352-72217371 None:intergenic 35.0%
AGTGGAGTTGCTTGATTTAT+CGG - chr5_2:72217352-72217371 Msa0786650:intron 35.0%
AATCGCAAACTATGTCTTGA+TGG + chr5_2:72217429-72217448 None:intergenic 35.0%
! CGATCACTTTGTTTCAAAGT+AGG - chr5_2:72217551-72217570 Msa0786650:intron 35.0%
TGCACTAATTGCTGCAAAAA+GGG - chr5_2:72217599-72217618 Msa0786650:intron 35.0%
ATCTGTGTTTGTCGCAAAAA+TGG - chr5_2:72215670-72215689 Msa0786650:three_prime_UTR 35.0%
GAAGGAAATGAAAGGATTAG+TGG + chr5_2:72215727-72215746 None:intergenic 35.0%
TGTGTGTGTGAATCTTAACA+CGG - chr5_2:72215764-72215783 Msa0786650:three_prime_UTR 35.0%
! CTTAGGATGTTCATCCTTTT+CGG + chr5_2:72215849-72215868 None:intergenic 35.0%
GACTTACCAGAATTTGGATT+TGG + chr5_2:72215912-72215931 None:intergenic 35.0%
ATCAGAGACTTACCAGAATT+TGG + chr5_2:72215918-72215937 None:intergenic 35.0%
! GAAAAGCAATGGACAAGTTT+TGG - chr5_2:72216063-72216082 Msa0786650:CDS 35.0%
!!! ACAAGTTTTGGCTATCAATG+AGG - chr5_2:72216075-72216094 Msa0786650:CDS 35.0%
GATTCGTAGAATCACTTCTT+TGG - chr5_2:72216209-72216228 Msa0786650:CDS 35.0%
GGCCCTTAAATCTAATGTTA+AGG - chr5_2:72216373-72216392 Msa0786650:intron 35.0%
GTTAGTACTTGTACTTTGGT+TGG - chr5_2:72216599-72216618 Msa0786650:intron 35.0%
TAGTACTTGTACTTTGGTTG+GGG - chr5_2:72216601-72216620 Msa0786650:intron 35.0%
! GTTCTGTTTGAGATTATTGC+TGG - chr5_2:72216659-72216678 Msa0786650:intron 35.0%
!!! AACTTGTTTTGAGAAGTCAC+TGG - chr5_2:72216705-72216724 Msa0786650:intron 35.0%
TCAACTATCAAAGTAGTCAC+TGG + chr5_2:72216793-72216812 None:intergenic 35.0%
TTGTTGGACATAGAGGTTTA+TGG - chr5_2:72216947-72216966 Msa0786650:intron 35.0%
CCATAGTTCTTAATCTTGGT+AGG + chr5_2:72217007-72217026 None:intergenic 35.0%
CCTACCAAGATTAAGAACTA+TGG - chr5_2:72217004-72217023 Msa0786650:intron 35.0%
TACCGTGATACTACTCTAAA+CGG - chr5_2:72217079-72217098 Msa0786650:intron 35.0%
TAATCTTCTTGTACACCAGA+GGG + chr5_2:72217249-72217268 None:intergenic 35.0%
!!! TGGCTTTGTAGGTTGTTTTT+AGG + chr5_2:72217288-72217307 None:intergenic 35.0%
CTGAATCACATAAACAGGTT+GGG + chr5_2:72217316-72217335 None:intergenic 35.0%
ACTGAATCACATAAACAGGT+TGG + chr5_2:72217317-72217336 None:intergenic 35.0%
TAAATCAAGCAACTCCACTA+GGG + chr5_2:72217351-72217370 None:intergenic 35.0%
ATAAATCAAGCAACTCCACT+AGG + chr5_2:72217352-72217371 None:intergenic 35.0%
AGTGGAGTTGCTTGATTTAT+CGG - chr5_2:72217352-72217371 Msa0786650:intron 35.0%
AATCGCAAACTATGTCTTGA+TGG + chr5_2:72217429-72217448 None:intergenic 35.0%
! CGATCACTTTGTTTCAAAGT+AGG - chr5_2:72217551-72217570 Msa0786650:intron 35.0%
TGCACTAATTGCTGCAAAAA+GGG - chr5_2:72217599-72217618 Msa0786650:intron 35.0%
CGCAAAAATGGTTAACGCTA+AGG - chr5_2:72215682-72215701 Msa0786650:three_prime_UTR 40.0%
! AAAGGATTAGTGGTAGTGCT+TGG + chr5_2:72215717-72215736 None:intergenic 40.0%
GAAGGAAGGAAGGAAATGAA+AGG + chr5_2:72215735-72215754 None:intergenic 40.0%
TTCGTGCCAAATCCAAATTC+TGG - chr5_2:72215903-72215922 Msa0786650:three_prime_UTR 40.0%
GAACAAGCTCTACTTGCAAT+CGG + chr5_2:72216643-72216662 None:intergenic 40.0%
AGGCTAATTGAACTTGGAGT+AGG - chr5_2:72216878-72216897 Msa0786650:intron 40.0%
!! TTGCAGTTTGTTGGACATAG+AGG - chr5_2:72216940-72216959 Msa0786650:intron 40.0%
GTCTTAATGATCTGGATGCA+AGG + chr5_2:72217157-72217176 None:intergenic 40.0%
TTCCAAAATCAAGTTCCCTC+TGG - chr5_2:72217231-72217250 Msa0786650:intron 40.0%
CTAATCTTCTTGTACACCAG+AGG + chr5_2:72217250-72217269 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG - chr5_2:72217248-72217267 Msa0786650:intron 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG + chr5_2:72217277-72217296 None:intergenic 40.0%
AGTGAATCACATTTCCCTAG+TGG - chr5_2:72217334-72217353 Msa0786650:intron 40.0%
GTGCACTAATTGCTGCAAAA+AGG - chr5_2:72217598-72217617 Msa0786650:intron 40.0%
ATCGCAAAACCTAGCTCATT+CGG + chr5_2:72217643-72217662 None:intergenic 40.0%
! AATGAGCTAGGTTTTGCGAT+AGG - chr5_2:72217643-72217662 Msa0786650:exon 40.0%
! ATGAGCTAGGTTTTGCGATA+GGG - chr5_2:72217644-72217663 Msa0786650:exon 40.0%
!! GTAATTGTGTCTAGCCTTGT+AGG - chr5_2:72217686-72217705 Msa0786650:five_prime_UTR 40.0%
CGCAAAAATGGTTAACGCTA+AGG - chr5_2:72215682-72215701 Msa0786650:three_prime_UTR 40.0%
! AAAGGATTAGTGGTAGTGCT+TGG + chr5_2:72215717-72215736 None:intergenic 40.0%
GAAGGAAGGAAGGAAATGAA+AGG + chr5_2:72215735-72215754 None:intergenic 40.0%
TTCGTGCCAAATCCAAATTC+TGG - chr5_2:72215903-72215922 Msa0786650:three_prime_UTR 40.0%
GAACAAGCTCTACTTGCAAT+CGG + chr5_2:72216643-72216662 None:intergenic 40.0%
AGGCTAATTGAACTTGGAGT+AGG - chr5_2:72216878-72216897 Msa0786650:intron 40.0%
!! TTGCAGTTTGTTGGACATAG+AGG - chr5_2:72216940-72216959 Msa0786650:intron 40.0%
GTCTTAATGATCTGGATGCA+AGG + chr5_2:72217157-72217176 None:intergenic 40.0%
TTCCAAAATCAAGTTCCCTC+TGG - chr5_2:72217231-72217250 Msa0786650:intron 40.0%
CTAATCTTCTTGTACACCAG+AGG + chr5_2:72217250-72217269 None:intergenic 40.0%
CTCTGGTGTACAAGAAGATT+AGG - chr5_2:72217248-72217267 Msa0786650:intron 40.0%
!!! GTTGTTTTTAGGCTCCTAGT+TGG + chr5_2:72217277-72217296 None:intergenic 40.0%
AGTGAATCACATTTCCCTAG+TGG - chr5_2:72217334-72217353 Msa0786650:intron 40.0%
GTGCACTAATTGCTGCAAAA+AGG - chr5_2:72217598-72217617 Msa0786650:intron 40.0%
ATCGCAAAACCTAGCTCATT+CGG + chr5_2:72217643-72217662 None:intergenic 40.0%
! AATGAGCTAGGTTTTGCGAT+AGG - chr5_2:72217643-72217662 Msa0786650:exon 40.0%
! ATGAGCTAGGTTTTGCGATA+GGG - chr5_2:72217644-72217663 Msa0786650:exon 40.0%
!! GTAATTGTGTCTAGCCTTGT+AGG - chr5_2:72217686-72217705 Msa0786650:five_prime_UTR 40.0%
GCTGGTTGTAGCTGTCTAAA+GGG + chr5_2:72215630-72215649 None:intergenic 45.0%
CTTTAGACAGCTACAACCAG+CGG - chr5_2:72215629-72215648 Msa0786650:three_prime_UTR 45.0%
GAAACAGTTTCACCAGTACC+AGG - chr5_2:72215802-72215821 Msa0786650:three_prime_UTR 45.0%
TTTCACCAGTACCAGGTTGT+CGG - chr5_2:72215809-72215828 Msa0786650:three_prime_UTR 45.0%
! GGATGTTCATCCTTTTCGGT+GGG + chr5_2:72215845-72215864 None:intergenic 45.0%
! AGGATGTTCATCCTTTTCGG+TGG + chr5_2:72215846-72215865 None:intergenic 45.0%
ACTTGTACTTTGGTTGGGGA+AGG - chr5_2:72216605-72216624 Msa0786650:intron 45.0%
CTTGTACTTTGGTTGGGGAA+GGG - chr5_2:72216606-72216625 Msa0786650:intron 45.0%
TTGCGTTATCAGAGTCGTAC+TGG - chr5_2:72217034-72217053 Msa0786650:intron 45.0%
! CGCCGTTTAGAGTAGTATCA+CGG + chr5_2:72217084-72217103 None:intergenic 45.0%
GGAGACAATGTACAACGAGA+TGG - chr5_2:72217108-72217127 Msa0786650:intron 45.0%
TGGTGGCTGTCTTAATGATC+TGG + chr5_2:72217165-72217184 None:intergenic 45.0%
TTTGCACAGATTAGCAGGGA+TGG + chr5_2:72217185-72217204 None:intergenic 45.0%
TCCCTGCTAATCTGTGCAAA+AGG - chr5_2:72217185-72217204 Msa0786650:intron 45.0%
! CCCTTTTGCACAGATTAGCA+GGG + chr5_2:72217189-72217208 None:intergenic 45.0%
CCCTGCTAATCTGTGCAAAA+GGG - chr5_2:72217186-72217205 Msa0786650:intron 45.0%
! TCCCTTTTGCACAGATTAGC+AGG + chr5_2:72217190-72217209 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG + chr5_2:72217236-72217255 None:intergenic 45.0%
AGAAGATTAGGCCACCAACT+AGG - chr5_2:72217260-72217279 Msa0786650:CDS 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG + chr5_2:72217274-72217293 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG + chr5_2:72217308-72217327 None:intergenic 45.0%
GGGAATGAACAAAGCTGTGT+TGG - chr5_2:72217664-72217683 Msa0786650:five_prime_UTR 45.0%
GCTGGTTGTAGCTGTCTAAA+GGG + chr5_2:72215630-72215649 None:intergenic 45.0%
CTTTAGACAGCTACAACCAG+CGG - chr5_2:72215629-72215648 Msa0786650:three_prime_UTR 45.0%
GAAACAGTTTCACCAGTACC+AGG - chr5_2:72215802-72215821 Msa0786650:three_prime_UTR 45.0%
TTTCACCAGTACCAGGTTGT+CGG - chr5_2:72215809-72215828 Msa0786650:three_prime_UTR 45.0%
! GGATGTTCATCCTTTTCGGT+GGG + chr5_2:72215845-72215864 None:intergenic 45.0%
! AGGATGTTCATCCTTTTCGG+TGG + chr5_2:72215846-72215865 None:intergenic 45.0%
ACTTGTACTTTGGTTGGGGA+AGG - chr5_2:72216605-72216624 Msa0786650:intron 45.0%
CTTGTACTTTGGTTGGGGAA+GGG - chr5_2:72216606-72216625 Msa0786650:intron 45.0%
TTGCGTTATCAGAGTCGTAC+TGG - chr5_2:72217034-72217053 Msa0786650:intron 45.0%
! CGCCGTTTAGAGTAGTATCA+CGG + chr5_2:72217084-72217103 None:intergenic 45.0%
GGAGACAATGTACAACGAGA+TGG - chr5_2:72217108-72217127 Msa0786650:intron 45.0%
TGGTGGCTGTCTTAATGATC+TGG + chr5_2:72217165-72217184 None:intergenic 45.0%
TTTGCACAGATTAGCAGGGA+TGG + chr5_2:72217185-72217204 None:intergenic 45.0%
TCCCTGCTAATCTGTGCAAA+AGG - chr5_2:72217185-72217204 Msa0786650:intron 45.0%
! CCCTTTTGCACAGATTAGCA+GGG + chr5_2:72217189-72217208 None:intergenic 45.0%
CCCTGCTAATCTGTGCAAAA+GGG - chr5_2:72217186-72217205 Msa0786650:intron 45.0%
! TCCCTTTTGCACAGATTAGC+AGG + chr5_2:72217190-72217209 None:intergenic 45.0%
! CACCAGAGGGAACTTGATTT+TGG + chr5_2:72217236-72217255 None:intergenic 45.0%
AGAAGATTAGGCCACCAACT+AGG - chr5_2:72217260-72217279 Msa0786650:CDS 45.0%
!! GTTTTTAGGCTCCTAGTTGG+TGG + chr5_2:72217274-72217293 None:intergenic 45.0%
! CATAAACAGGTTGGGCTTCT+TGG + chr5_2:72217308-72217327 None:intergenic 45.0%
GGGAATGAACAAAGCTGTGT+TGG - chr5_2:72217664-72217683 Msa0786650:five_prime_UTR 45.0%
! CGCTGGTTGTAGCTGTCTAA+AGG + chr5_2:72215631-72215650 None:intergenic 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG - chr5_2:72215880-72215899 Msa0786650:three_prime_UTR 50.0%
GGATTTGGCACGAACCTCAT+TGG + chr5_2:72215897-72215916 None:intergenic 50.0%
TACTTTGGTTGGGGAAGGGA+AGG - chr5_2:72216610-72216629 Msa0786650:intron 50.0%
CAAGCTCTACTTGCAATCGG+AGG + chr5_2:72216640-72216659 None:intergenic 50.0%
TACTACTCTAAACGGCGCTG+TGG - chr5_2:72217087-72217106 Msa0786650:intron 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG + chr5_2:72217299-72217318 None:intergenic 50.0%
ATGCTCGTACCGAATGAGCT+AGG - chr5_2:72217631-72217650 Msa0786650:intron 50.0%
! CGCTGGTTGTAGCTGTCTAA+AGG + chr5_2:72215631-72215650 None:intergenic 50.0%
!! GAAGCTTTGGGCAACCAATG+AGG - chr5_2:72215880-72215899 Msa0786650:three_prime_UTR 50.0%
GGATTTGGCACGAACCTCAT+TGG + chr5_2:72215897-72215916 None:intergenic 50.0%
TACTTTGGTTGGGGAAGGGA+AGG - chr5_2:72216610-72216629 Msa0786650:intron 50.0%
CAAGCTCTACTTGCAATCGG+AGG + chr5_2:72216640-72216659 None:intergenic 50.0%
TACTACTCTAAACGGCGCTG+TGG - chr5_2:72217087-72217106 Msa0786650:intron 50.0%
!! GTTGGGCTTCTTGGCTTTGT+AGG + chr5_2:72217299-72217318 None:intergenic 50.0%
ATGCTCGTACCGAATGAGCT+AGG - chr5_2:72217631-72217650 Msa0786650:intron 50.0%
TAGACAGCTACAACCAGCGG+CGG - chr5_2:72215632-72215651 Msa0786650:three_prime_UTR 55.0%
ACCAGTACCAGGTTGTCGGA+AGG - chr5_2:72215813-72215832 Msa0786650:three_prime_UTR 55.0%
CCAGTACCAGGTTGTCGGAA+GGG - chr5_2:72215814-72215833 Msa0786650:three_prime_UTR 55.0%
AAGGGCTCTTCCCACCGAAA+AGG - chr5_2:72215832-72215851 Msa0786650:three_prime_UTR 55.0%
ACGAGATGGCATCTCGTCAC+AGG - chr5_2:72217122-72217141 Msa0786650:intron 55.0%
CGAGATGGCATCTCGTCACA+GGG - chr5_2:72217123-72217142 Msa0786650:intron 55.0%
GCACAGATTAGCAGGGATGG+TGG + chr5_2:72217182-72217201 None:intergenic 55.0%
GCTCATTCGGTACGAGCATC+TGG + chr5_2:72217630-72217649 None:intergenic 55.0%
TAGACAGCTACAACCAGCGG+CGG - chr5_2:72215632-72215651 Msa0786650:three_prime_UTR 55.0%
ACCAGTACCAGGTTGTCGGA+AGG - chr5_2:72215813-72215832 Msa0786650:three_prime_UTR 55.0%
CCAGTACCAGGTTGTCGGAA+GGG - chr5_2:72215814-72215833 Msa0786650:three_prime_UTR 55.0%
AAGGGCTCTTCCCACCGAAA+AGG - chr5_2:72215832-72215851 Msa0786650:three_prime_UTR 55.0%
ACGAGATGGCATCTCGTCAC+AGG - chr5_2:72217122-72217141 Msa0786650:intron 55.0%
CGAGATGGCATCTCGTCACA+GGG - chr5_2:72217123-72217142 Msa0786650:intron 55.0%
GCACAGATTAGCAGGGATGG+TGG + chr5_2:72217182-72217201 None:intergenic 55.0%
GCTCATTCGGTACGAGCATC+TGG + chr5_2:72217630-72217649 None:intergenic 55.0%
CCCTTCCGACAACCTGGTAC+TGG + chr5_2:72215817-72215836 None:intergenic 60.0%
GAAGAGCCCTTCCGACAACC+TGG + chr5_2:72215823-72215842 None:intergenic 60.0%
TGGCATCTCGTCACAGGGTC+AGG - chr5_2:72217128-72217147 Msa0786650:intron 60.0%
CCCTTCCGACAACCTGGTAC+TGG + chr5_2:72215817-72215836 None:intergenic 60.0%
GAAGAGCCCTTCCGACAACC+TGG + chr5_2:72215823-72215842 None:intergenic 60.0%
TGGCATCTCGTCACAGGGTC+AGG - chr5_2:72217128-72217147 Msa0786650:intron 60.0%
ACAGCTACAACCAGCGGCGG+CGG - chr5_2:72215635-72215654 Msa0786650:three_prime_UTR 65.0%
AGATTGAGAACCGCCGCCGC+TGG + chr5_2:72215648-72215667 None:intergenic 65.0%
ACAGCTACAACCAGCGGCGG+CGG - chr5_2:72215635-72215654 Msa0786650:three_prime_UTR 65.0%
AGATTGAGAACCGCCGCCGC+TGG + chr5_2:72215648-72215667 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 72215626 72217719 72215626 ID=Msa0786650;Name=Msa0786650
chr5_2 mRNA 72215626 72217719 72215626 ID=Msa0786650-mRNA-1;Parent=Msa0786650;Name=Msa0786650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=63|1|1|1|1|1|4|389|178
chr5_2 exon 72215626 72216356 72215626 ID=Msa0786650-mRNA-1:exon:21930;Parent=Msa0786650-mRNA-1
chr5_2 exon 72217249 72217312 72217249 ID=Msa0786650-mRNA-1:exon:21929;Parent=Msa0786650-mRNA-1
chr5_2 exon 72217421 72217536 72217421 ID=Msa0786650-mRNA-1:exon:21928;Parent=Msa0786650-mRNA-1
chr5_2 exon 72217642 72217719 72217642 ID=Msa0786650-mRNA-1:exon:21927;Parent=Msa0786650-mRNA-1
chr5_2 five_prime_UTR 72217657 72217719 72217657 ID=Msa0786650-mRNA-1:five_prime_utr;Parent=Msa0786650-mRNA-1
chr5_2 CDS 72217642 72217656 72217642 ID=Msa0786650-mRNA-1:cds;Parent=Msa0786650-mRNA-1
chr5_2 CDS 72217421 72217536 72217421 ID=Msa0786650-mRNA-1:cds;Parent=Msa0786650-mRNA-1
chr5_2 CDS 72217249 72217312 72217249 ID=Msa0786650-mRNA-1:cds;Parent=Msa0786650-mRNA-1
chr5_2 CDS 72216015 72216356 72216015 ID=Msa0786650-mRNA-1:cds;Parent=Msa0786650-mRNA-1
chr5_2 three_prime_UTR 72215626 72216014 72215626 ID=Msa0786650-mRNA-1:three_prime_utr;Parent=Msa0786650-mRNA-1
Gene Sequence

>Msa0786650

ATGGTTAACGCTAAGTTTCACCAGTACCAGGTTGTCGGAAGGGCTCTTCCCACCGAAAAGGATGAACATCCTAAGATTTATCGTATGAAGCTTTGGGCAACCAATGAGGTTCGTGCCAAATCCAAATTCTGGTATTTCTTAAGGAAGTTGAAGAAGGTTAAGAAAAGCAATGGACAAGTTTTGGCTATCAATGAGATCTTTGAGAAAAATCCTACCAAGATTAAGAACTATGGAATTTGGTTGCGTTATCAGAGTCGTACTGGTTATCATAATATGTACAAGGAATACCGTGATACTACTCTAAACGGCGCTGTGGAGACAATGTACAACGAGATGGCATCTCGTCACAGGGTCAGGTTTCCTTGCATCCAGATCATTAAGACAGCCACCATCCCTGCTAATCTGTGCAAAAGGGAGAGCACTAAGCAGTTTCACAATTCCAAAATCAAGTTCCCTCTGGTGTACAAGAAGATTAGGCCACCAACTAGGAGCCTAAAAACAACCTACAAAGCCAAGAAGCCCAACCTGTTTATGTGA

Protein sequence

>Msa0786650

MVNAKFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPANLCKRESTKQFHNSKIKFPLVYKKIRPPTRSLKTTYKAKKPNLFM*