AlfalfaGEDB | Msa0018390

M. sativa cultivar zhongmu-4 / Msa0018390

KEGG: K15015
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039
PFAM: PF01490.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0018390	sp\|F4IUW3\|AVT1C_ARATH	49.388	245	73	2	11	205	305	548	1.86e-68	221

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018390	Msa0158760	0.805794	1.124040e-49	-8.615850e-47
Msa0018390	Msa0689830	0.800302	1.536317e-48	-8.615850e-47
Msa0018390	Msa1124210	0.807355	5.263453e-50	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0018390	MtrunA17_Chr1g0171011	86.429	140	17	1	68	207	1	138	3.92e-76	225
Msa0018390	MtrunA17_Chr1g0171021	96.203	79	3	0	11	89	298	376	1.32e-47	162
Msa0018390	MtrunA17_Chr1g0199441	54.286	140	60	1	66	205	11	146	1.57e-42	140
Msa0018390	MtrunA17_Chr7g0239021	37.398	246	100	4	11	204	304	547	1.83e-41	147
Msa0018390	MtrunA17_Chr7g0239011	36.179	246	104	3	11	204	207	451	1.04e-37	135
Msa0018390	MtrunA17_Chr7g0256281	34.728	239	112	2	9	204	285	522	5.06e-37	134
Msa0018390	MtrunA17_Chr4g0022261	34.440	241	99	6	17	202	285	521	1.79e-34	127
Msa0018390	MtrunA17_Chr7g0217381	29.719	249	123	3	8	205	183	430	3.21e-31	117
Msa0018390	MtrunA17_Chr7g0217401	29.675	246	121	3	11	205	187	431	6.45e-30	114
Msa0018390	MtrunA17_Chr3g0090101	31.250	208	92	2	11	168	140	346	9.94e-30	113

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0018390	AT2G39130.2	49.388	245	73	2	11	205	305	548	1.89e-69	221
Msa0018390	AT2G39130.1	49.388	245	73	2	11	205	305	548	1.89e-69	221
Msa0018390	AT5G02180.1	37.238	239	99	2	17	205	311	548	5.19e-45	157
Msa0018390	AT5G02180.2	37.238	239	99	2	17	205	311	548	5.19e-45	157
Msa0018390	AT2G39130.3	46.667	180	45	2	11	140	305	483	5.63e-44	153
Msa0018390	AT3G09340.1	36.585	246	104	3	11	205	279	523	1.42e-42	150
Msa0018390	AT3G09330.1	36.179	246	105	3	11	205	279	523	1.83e-41	147
Msa0018390	AT3G54830.2	43.284	201	56	4	11	154	295	494	4.71e-40	143
Msa0018390	AT3G54830.1	43.284	201	56	4	11	154	295	494	4.71e-40	143
Msa0018390	AT5G02170.1	37.652	247	101	3	11	205	280	525	6.84e-39	140

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 63 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTAACTCGAAATTTG+GGG	0.601878	1_1:-30804089	None:intergenic
AACAAGCAGATGGTAGAATA+AGG	0.277870	1_1:-30803450	None:intergenic
AACGAAAGACTAACCGAAAA+AGG	0.249750	1_1:-30803123	None:intergenic
AACTGAAAGTTGGGATTATT+TGG	0.222355	1_1:-30803038	None:intergenic
AACTTCTCCAAACTTCAAAA+CGG	0.505355	1_1:-30804195	None:intergenic
ACAAGCAGATGGTAGAATAA+GGG	0.516078	1_1:-30803449	None:intergenic
ACCAAGTCAAGAGTACTTTA+GGG	0.401734	1_1:-30802182	None:intergenic
ACTTCAAACAATCTCAGATT+TGG	0.321972	1_1:-30804240	None:intergenic
AGCTTGCGGAGTGATTGCAA+CGG	0.716437	1_1:+30801978	Msa0018390:CDS
AGGCAGAATCAAGCGCTCTC+AGG	0.479863	1_1:+30803489	Msa0018390:CDS

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTACAATTTCAAGATGAAAG+TGG	-	chr1_1:30802242-30802261	None:intergenic	30.0%
ACTTAAAAGAAATCGTGGTT+GGG	-	chr1_1:30802441-30802460	None:intergenic	30.0%
AACTTAAAAGAAATCGTGGT+TGG	-	chr1_1:30802442-30802461	None:intergenic	30.0%
AACTGAAAGTTGGGATTATT+TGG	-	chr1_1:30803041-30803060	None:intergenic	30.0%
CTGAATCAAACAGTTAATGA+AGG	-	chr1_1:30803363-30803382	None:intergenic	30.0%
TATCGGGTTTAAGTAAACAA+AGG	+	chr1_1:30803655-30803674	Msa0018390:intron	30.0%
GAAAAAAACGATAGTCAGAT+TGG	-	chr1_1:30803857-30803876	None:intergenic	30.0%
GTACCTGTAGAAATATGAAA+AGG	-	chr1_1:30803879-30803898	None:intergenic	30.0%
AACTTCTCCAAACTTCAAAA+CGG	-	chr1_1:30804198-30804217	None:intergenic	30.0%
GAGAAGTTAAACATATACTG+TGG	+	chr1_1:30804210-30804229	Msa0018390:three_prime_UTR	30.0%

Showing 1 to 10 of 292 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	30801937	30804358	30801937	ID=Msa0018390;Name=Msa0018390
chr1_1	mRNA	30801937	30804358	30801937	ID=Msa0018390-mRNA-1;Parent=Msa0018390;Name=Msa0018390-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0.75\|0.6\|1\|1\|1\|5\|365\|207
chr1_1	exon	30801937	30802202	30801937	ID=Msa0018390-mRNA-1:exon:10265;Parent=Msa0018390-mRNA-1
chr1_1	exon	30802980	30803131	30802980	ID=Msa0018390-mRNA-1:exon:10266;Parent=Msa0018390-mRNA-1
chr1_1	exon	30803308	30803351	30803308	ID=Msa0018390-mRNA-1:exon:10267;Parent=Msa0018390-mRNA-1
chr1_1	exon	30803448	30803510	30803448	ID=Msa0018390-mRNA-1:exon:10268;Parent=Msa0018390-mRNA-1
chr1_1	exon	30803895	30804358	30803895	ID=Msa0018390-mRNA-1:exon:10269;Parent=Msa0018390-mRNA-1
chr1_1	CDS	30801937	30802202	30801937	ID=Msa0018390-mRNA-1:cds;Parent=Msa0018390-mRNA-1
chr1_1	CDS	30802980	30803131	30802980	ID=Msa0018390-mRNA-1:cds;Parent=Msa0018390-mRNA-1
chr1_1	CDS	30803308	30803351	30803308	ID=Msa0018390-mRNA-1:cds;Parent=Msa0018390-mRNA-1
chr1_1	CDS	30803448	30803510	30803448	ID=Msa0018390-mRNA-1:cds;Parent=Msa0018390-mRNA-1
chr1_1	CDS	30803895	30803993	30803895	ID=Msa0018390-mRNA-1:cds;Parent=Msa0018390-mRNA-1
chr1_1	three_prime_UTR	30803994	30804358	30803994	ID=Msa0018390-mRNA-1:three_prime_utr;Parent=Msa0018390-mRNA-1

Gene Sequence

>Msa0018390

ATGCTTACATACATCATTGAATCGTTTTCTTCTGTTGTACCAGCTTGCGGAGTGATTGCAACGGTTGTAGTGGTACTGTGCTTGTTGTGGGTTGGAGTGGTAGATGATGTTCCCATGCATACAGAAGGAACAATAACACTGAGGCTTTCAACATTCCCTGTTGCTGTTGGTCTCTATGGTTATTGCTTCGCAGGACATGCTGTGTTCCCGAATCTGTATACAGCTATGGCAAATCGAAATCAATTCCCTAAAGTACTCTTGACTTGCACCACATATGCTTTGAGTCTAACTCCAGTAGCATTGTCGCTAGAGGAATTGATACCACCAAATAATCCCAACTTTCAGTTCTACTCCATCTGCATCAGAACAGCATTAGTGATTTCTACACTGCTTGTTGGTCTTTCAGTTCCCTTTTTCGGTTTGGTAATGTCGTTAATTGGGTCCTTGCTCACAATGTTTGTTTCCCTTATTCTACCATCTGCTTGTTTCCTAAGCATCAAGGGAGGCAGAATCAAGCGCTCTCAGGTACTACTATGTGTTACAGTGGTTATAGTAGGTCTTGTATCGTGTGGTTTTGGATCATACTCGGCCATCTCGGAGATGATTGCGGAAATGTTTGCATGA

Protein sequence

>Msa0018390

MLTYIIESFSSVVPACGVIATVVVVLCLLWVGVVDDVPMHTEGTITLRLSTFPVAVGLYGYCFAGHAVFPNLYTAMANRNQFPKVLLTCTTYALSLTPVALSLEELIPPNNPNFQFYSICIRTALVISTLLVGLSVPFFGLVMSLIGSLLTMFVSLILPSACFLSIKGGRIKRSQVLLCVTVVIVGLVSCGFGSYSAISEMIAEMFA*