Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158760 | sp|F4IUW3|AVT1C_ARATH | 57.559 | 549 | 186 | 6 | 1 | 503 | 1 | 548 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158760 | A0A1S2YMK1 | 78.125 | 544 | 78 | 3 | 1 | 505 | 1 | 542 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0158760 | 0.828624 | 8.106805e-55 | -8.615850e-47 |
| Msa0006840 | Msa0158760 | 0.805782 | 1.130637e-49 | -8.615850e-47 |
| Msa0018390 | Msa0158760 | 0.805794 | 1.124040e-49 | -8.615850e-47 |
| Msa0019830 | Msa0158760 | 0.843889 | 1.061179e-58 | -8.615850e-47 |
| Msa0032130 | Msa0158760 | 0.817220 | 3.692840e-52 | -8.615850e-47 |
| Msa0032390 | Msa0158760 | 0.820815 | 5.619190e-53 | -8.615850e-47 |
| Msa0045620 | Msa0158760 | 0.821627 | 3.651822e-53 | -8.615850e-47 |
| Msa0050530 | Msa0158760 | 0.804842 | 1.779231e-49 | -8.615850e-47 |
| Msa0057860 | Msa0158760 | 0.823567 | 1.291875e-53 | -8.615850e-47 |
| Msa0100890 | Msa0158760 | 0.805807 | 1.116802e-49 | -8.615850e-47 |
| Msa0102920 | Msa0158760 | 0.831951 | 1.247247e-55 | -8.615850e-47 |
| Msa0136690 | Msa0158760 | 0.893617 | 5.320620e-75 | -8.615850e-47 |
| Msa0147680 | Msa0158760 | 0.838127 | 3.457620e-57 | -8.615850e-47 |
| Msa0158760 | Msa0173250 | 0.807800 | 4.235156e-50 | -8.615850e-47 |
| Msa0158760 | Msa0185690 | 0.813593 | 2.366310e-51 | -8.615850e-47 |
| Msa0158760 | Msa0206370 | 0.808974 | 2.378638e-50 | -8.615850e-47 |
| Msa0158760 | Msa0235080 | 0.811844 | 5.712446e-51 | -8.615850e-47 |
| Msa0158760 | Msa0240590 | -0.807341 | 5.300789e-50 | -8.615850e-47 |
| Msa0158760 | Msa0260570 | 0.806682 | 7.304606e-50 | -8.615850e-47 |
| Msa0158760 | Msa0260980 | 0.818819 | 1.606061e-52 | -8.615850e-47 |
| Msa0158760 | Msa0336520 | 0.802180 | 6.341328e-49 | -8.615850e-47 |
| Msa0158760 | Msa0340270 | 0.800330 | 1.515840e-48 | -8.615850e-47 |
| Msa0158760 | Msa0349930 | 0.805170 | 1.518874e-49 | -8.615850e-47 |
| Msa0158760 | Msa0416210 | 0.803554 | 3.298249e-49 | -8.615850e-47 |
| Msa0158760 | Msa0422690 | 0.801786 | 7.638810e-49 | -8.615850e-47 |
| Msa0158760 | Msa0422820 | 0.817998 | 2.465801e-52 | -8.615850e-47 |
| Msa0158760 | Msa0422900 | 0.809254 | 2.072651e-50 | -8.615850e-47 |
| Msa0158760 | Msa0433630 | 0.805802 | 1.119301e-49 | -8.615850e-47 |
| Msa0158760 | Msa0467250 | 0.807385 | 5.185959e-50 | -8.615850e-47 |
| Msa0158760 | Msa0469060 | 0.819062 | 1.414537e-52 | -8.615850e-47 |
| Msa0158760 | Msa0530660 | 0.808298 | 3.317718e-50 | -8.615850e-47 |
| Msa0158760 | Msa0566460 | 0.838403 | 2.936603e-57 | -8.615850e-47 |
| Msa0158760 | Msa0575950 | 0.802975 | 4.346816e-49 | -8.615850e-47 |
| Msa0158760 | Msa0587180 | 0.804384 | 2.217064e-49 | -8.615850e-47 |
| Msa0158760 | Msa0602050 | 0.816777 | 4.641630e-52 | -8.615850e-47 |
| Msa0158760 | Msa0623310 | 0.821914 | 3.133314e-53 | -8.615850e-47 |
| Msa0158760 | Msa0626980 | 0.803703 | 3.072161e-49 | -8.615850e-47 |
| Msa0158760 | Msa0627360 | 0.808781 | 2.615762e-50 | -8.615850e-47 |
| Msa0158760 | Msa0658120 | 0.828643 | 8.021299e-55 | -8.615850e-47 |
| Msa0158760 | Msa0673940 | 0.818885 | 1.551766e-52 | -8.615850e-47 |
| Msa0158760 | Msa0687370 | 0.806529 | 7.869928e-50 | -8.615850e-47 |
| Msa0158760 | Msa0689830 | 0.852867 | 3.481472e-61 | -8.615850e-47 |
| Msa0158760 | Msa0702970 | 0.830134 | 3.484150e-55 | -8.615850e-47 |
| Msa0158760 | Msa0726520 | 0.811510 | 6.754031e-51 | -8.615850e-47 |
| Msa0158760 | Msa0751720 | 0.817451 | 3.275838e-52 | -8.615850e-47 |
| Msa0158760 | Msa0761830 | 0.805702 | 1.175174e-49 | -8.615850e-47 |
| Msa0158760 | Msa0766290 | 0.804066 | 2.582214e-49 | -8.615850e-47 |
| Msa0158760 | Msa0766860 | 0.824400 | 8.241199e-54 | -8.615850e-47 |
| Msa0158760 | Msa0804170 | 0.827897 | 1.213841e-54 | -8.615850e-47 |
| Msa0158760 | Msa0828350 | 0.812696 | 3.722857e-51 | -8.615850e-47 |
| Msa0158760 | Msa0846900 | 0.827072 | 1.914722e-54 | -8.615850e-47 |
| Msa0158760 | Msa0850600 | 0.801884 | 7.292722e-49 | -8.615850e-47 |
| Msa0158760 | Msa0966120 | 0.806809 | 6.868308e-50 | -8.615850e-47 |
| Msa0158760 | Msa0987670 | 0.839241 | 1.783018e-57 | -8.615850e-47 |
| Msa0158760 | Msa0989480 | 0.814673 | 1.366758e-51 | -8.615850e-47 |
| Msa0158760 | Msa1021560 | 0.819013 | 1.451151e-52 | -8.615850e-47 |
| Msa0158760 | Msa1050260 | 0.821541 | 3.822693e-53 | -8.615850e-47 |
| Msa0158760 | Msa1060300 | 0.807921 | 3.991148e-50 | -8.615850e-47 |
| Msa0158760 | Msa1105540 | 0.801268 | 9.757123e-49 | -8.615850e-47 |
| Msa0158760 | Msa1105580 | 0.800697 | 1.276134e-48 | -8.615850e-47 |
| Msa0158760 | Msa1124210 | 0.844545 | 7.073003e-59 | -8.615850e-47 |
| Msa0158760 | Msa1148930 | 0.830594 | 2.688914e-55 | -8.615850e-47 |
| Msa0158760 | Msa1180840 | 0.810144 | 1.334078e-50 | -8.615850e-47 |
| Msa0158760 | Msa1186260 | 0.807800 | 4.235544e-50 | -8.615850e-47 |
| Msa0158760 | Msa1217890 | 0.832530 | 8.967190e-56 | -8.615850e-47 |
| Msa0158760 | Msa1220720 | 0.802034 | 6.792447e-49 | -8.615850e-47 |
| Msa0158760 | Msa1265570 | 0.803542 | 3.317331e-49 | -8.615850e-47 |
| Msa0158760 | Msa1281370 | 0.803584 | 3.251225e-49 | -8.615850e-47 |
| Msa0158760 | Msa1283980 | 0.809247 | 2.079211e-50 | -8.615850e-47 |
| Msa0158760 | Msa1328280 | 0.822692 | 2.067642e-53 | -8.615850e-47 |
| Msa0158760 | Msa1334560 | 0.801800 | 7.588342e-49 | -8.615850e-47 |
| Msa0158760 | Msa1334670 | 0.804776 | 1.836536e-49 | -8.615850e-47 |
| Msa0158760 | Msa1342760 | 0.811080 | 8.373579e-51 | -8.615850e-47 |
| Msa0158760 | Msa1365230 | 0.802407 | 5.693311e-49 | -8.615850e-47 |
| Msa0158760 | Msa1371800 | 0.820898 | 5.376274e-53 | -8.615850e-47 |
| Msa0158760 | Msa1376310 | 0.824637 | 7.247886e-54 | -8.615850e-47 |
| Msa0158760 | Msa1385570 | 0.813028 | 3.149451e-51 | -8.615850e-47 |
| Msa0158760 | Msa1395050 | 0.825960 | 3.524666e-54 | -8.615850e-47 |
| Msa0158760 | Msa1398490 | 0.816347 | 5.795367e-52 | -8.615850e-47 |
| Msa0158760 | Msa1407670 | 0.801756 | 7.749638e-49 | -8.615850e-47 |
| Msa0158760 | Msa1413020 | 0.823202 | 1.572354e-53 | -8.615850e-47 |
| Msa0158760 | Msa1439920 | 0.818908 | 1.533184e-52 | -8.615850e-47 |
| Msa0158760 | Msa1447900 | 0.802278 | 6.053513e-49 | -8.615850e-47 |
| Msa0158760 | Msa1449770 | 0.809218 | 2.109364e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158760 | MtrunA17_Chr1g0171021 | 96.570 | 379 | 13 | 0 | 1 | 379 | 1 | 379 | 0.0 | 752 |
| Msa0158760 | MtrunA17_Chr1g0199431 | 67.021 | 376 | 117 | 7 | 1 | 374 | 1 | 371 | 7.83e-168 | 481 |
| Msa0158760 | MtrunA17_Chr7g0239021 | 40.320 | 563 | 237 | 15 | 15 | 502 | 9 | 547 | 7.29e-120 | 362 |
| Msa0158760 | MtrunA17_Chr7g0256281 | 37.803 | 537 | 272 | 9 | 2 | 500 | 8 | 520 | 3.99e-113 | 344 |
| Msa0158760 | MtrunA17_Chr4g0022261 | 37.349 | 498 | 237 | 7 | 51 | 500 | 51 | 521 | 7.89e-109 | 333 |
| Msa0158760 | MtrunA17_Chr7g0239011 | 43.672 | 403 | 185 | 4 | 141 | 502 | 50 | 451 | 8.37e-100 | 308 |
| Msa0158760 | MtrunA17_Chr7g0256251 | 40.302 | 397 | 211 | 8 | 2 | 394 | 6 | 380 | 1.18e-93 | 291 |
| Msa0158760 | MtrunA17_Chr7g0217401 | 35.349 | 430 | 233 | 8 | 117 | 503 | 4 | 431 | 1.53e-83 | 265 |
| Msa0158760 | MtrunA17_Chr7g0217381 | 34.954 | 432 | 237 | 7 | 114 | 503 | 1 | 430 | 1.54e-83 | 265 |
| Msa0158760 | MtrunA17_Chr8g0361631 | 36.785 | 367 | 185 | 7 | 144 | 468 | 11 | 372 | 8.81e-75 | 241 |
| Msa0158760 | MtrunA17_Chr3g0105861 | 32.251 | 431 | 246 | 7 | 116 | 503 | 4 | 431 | 2.34e-74 | 241 |
| Msa0158760 | MtrunA17_Chr3g0090101 | 38.462 | 338 | 168 | 4 | 168 | 466 | 10 | 346 | 6.37e-74 | 238 |
| Msa0158760 | MtrunA17_Chr1g0171011 | 89.630 | 135 | 7 | 1 | 378 | 505 | 4 | 138 | 2.71e-72 | 226 |
| Msa0158760 | MtrunA17_Chr8g0361211 | 33.770 | 382 | 202 | 7 | 131 | 470 | 45 | 417 | 7.09e-69 | 228 |
| Msa0158760 | MtrunA17_Chr8g0361641 | 34.718 | 337 | 173 | 6 | 174 | 468 | 1 | 332 | 4.64e-63 | 209 |
| Msa0158760 | MtrunA17_Chr8g0361591 | 36.418 | 335 | 170 | 5 | 174 | 468 | 1 | 332 | 1.67e-59 | 200 |
| Msa0158760 | MtrunA17_Chr3g0105831 | 40.196 | 204 | 122 | 0 | 169 | 372 | 5 | 208 | 5.28e-55 | 183 |
| Msa0158760 | MtrunA17_Chr3g0122241 | 28.125 | 448 | 279 | 5 | 95 | 500 | 20 | 466 | 2.05e-46 | 168 |
| Msa0158760 | MtrunA17_Chr1g0199441 | 49.669 | 151 | 61 | 1 | 353 | 503 | 11 | 146 | 8.94e-38 | 135 |
| Msa0158760 | MtrunA17_Chr7g0256241 | 43.243 | 111 | 63 | 0 | 390 | 500 | 4 | 114 | 1.01e-22 | 93.2 |
| Msa0158760 | MtrunA17_Chr3g0105821 | 31.897 | 116 | 76 | 2 | 390 | 503 | 36 | 150 | 1.36e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158760 | AT2G39130.2 | 57.559 | 549 | 186 | 6 | 1 | 503 | 1 | 548 | 0.0 | 613 |
| Msa0158760 | AT2G39130.1 | 57.559 | 549 | 186 | 6 | 1 | 503 | 1 | 548 | 0.0 | 613 |
| Msa0158760 | AT2G39130.3 | 57.645 | 484 | 158 | 6 | 1 | 438 | 1 | 483 | 0.0 | 540 |
| Msa0158760 | AT3G54830.2 | 53.571 | 504 | 176 | 7 | 1 | 454 | 1 | 496 | 5.33e-170 | 491 |
| Msa0158760 | AT3G54830.1 | 53.571 | 504 | 176 | 7 | 1 | 454 | 1 | 496 | 5.33e-170 | 491 |
| Msa0158760 | AT3G09340.1 | 41.133 | 547 | 254 | 10 | 1 | 503 | 1 | 523 | 4.41e-129 | 386 |
| Msa0158760 | AT5G02180.1 | 40.112 | 536 | 242 | 7 | 15 | 503 | 45 | 548 | 1.81e-128 | 385 |
| Msa0158760 | AT5G02180.2 | 40.112 | 536 | 242 | 7 | 15 | 503 | 45 | 548 | 1.81e-128 | 385 |
| Msa0158760 | AT3G09330.1 | 42.857 | 497 | 224 | 9 | 51 | 503 | 43 | 523 | 1.33e-122 | 369 |
| Msa0158760 | AT5G02170.1 | 40.293 | 546 | 259 | 9 | 2 | 503 | 3 | 525 | 5.89e-121 | 365 |
| Msa0158760 | AT2G41190.1 | 36.832 | 524 | 255 | 9 | 32 | 500 | 30 | 532 | 2.35e-111 | 340 |
| Msa0158760 | AT5G02170.2 | 37.262 | 526 | 214 | 14 | 2 | 473 | 3 | 466 | 7.22e-98 | 304 |
| Msa0158760 | AT2G41190.2 | 35.974 | 467 | 223 | 9 | 32 | 443 | 30 | 475 | 9.22e-90 | 284 |
| Msa0158760 | AT5G15240.1 | 34.406 | 404 | 225 | 4 | 139 | 502 | 19 | 422 | 4.23e-74 | 241 |
| Msa0158760 | AT3G28960.5 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 2.75e-70 | 230 |
| Msa0158760 | AT3G28960.2 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 2.75e-70 | 230 |
| Msa0158760 | AT3G28960.3 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 2.75e-70 | 230 |
| Msa0158760 | AT3G28960.1 | 33.252 | 412 | 224 | 7 | 136 | 503 | 1 | 405 | 2.75e-70 | 230 |
| Msa0158760 | AT5G15240.3 | 32.738 | 336 | 186 | 4 | 207 | 502 | 1 | 336 | 1.09e-52 | 182 |
| Msa0158760 | AT3G28960.4 | 30.792 | 341 | 187 | 6 | 207 | 503 | 1 | 336 | 2.43e-51 | 178 |
| Msa0158760 | AT5G16740.1 | 30.198 | 404 | 211 | 9 | 154 | 503 | 34 | 420 | 7.80e-48 | 171 |
| Msa0158760 | AT5G15240.2 | 30.411 | 365 | 182 | 7 | 139 | 502 | 19 | 312 | 1.78e-40 | 148 |
| Msa0158760 | AT3G11900.2 | 29.825 | 228 | 141 | 5 | 157 | 373 | 35 | 254 | 5.01e-15 | 77.8 |
| Msa0158760 | AT3G11900.1 | 29.825 | 228 | 141 | 5 | 157 | 373 | 35 | 254 | 5.01e-15 | 77.8 |
Find 145 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAAGTTAACTCAAAATT+TGG | 0.159623 | 1_4:+28449208 | None:intergenic |
| TATAAAGGATATTTGGTAAA+TGG | 0.175403 | 1_4:+28450470 | None:intergenic |
| CCTGTTGCTGTTGGTCTCTA+TGG | 0.216394 | 1_4:-28451135 | Msa0158760:CDS |
| AACTGAAAGTTGGGATTATT+TGG | 0.222355 | 1_4:+28450190 | None:intergenic |
| TCCAAATGCATACTTAAGTT+TGG | 0.242956 | 1_4:-28451505 | Msa0158760:CDS |
| TTTGGACAAGCTGTGCTTAA+TGG | 0.243493 | 1_4:-28453131 | Msa0158760:intron |
| TAGCACTTATAAAGGATATT+TGG | 0.246445 | 1_4:+28450463 | None:intergenic |
| CACTATTTAAATTACTTCTT+TGG | 0.255717 | 1_4:+28455146 | None:intergenic |
| AATGAAAGACTAACCGAAAA+AGG | 0.259920 | 1_4:+28450105 | None:intergenic |
| GCCATAGCTGTATACAGATT+TGG | 0.260800 | 1_4:+28451084 | None:intergenic |
| TTTCCTGGTCAATGCACTTT+TGG | 0.269845 | 1_4:-28453149 | Msa0158760:CDS |
| TACCAAGTCAAGAGTACTTT+AGG | 0.272613 | 1_4:+28451045 | None:intergenic |
| AACAAGCAGATGGTAGAATA+AGG | 0.277870 | 1_4:+28449778 | None:intergenic |
| GAAAAGTTAACTCAAAATTT+GGG | 0.296219 | 1_4:+28449209 | None:intergenic |
| CGCATTCTAAGTTACATATC+AGG | 0.305862 | 1_4:-28451399 | Msa0158760:intron |
| GGTCTTGTATCATGCGGTTT+TGG | 0.312399 | 1_4:-28449375 | Msa0158760:CDS |
| CCCAAACTTAAGTATGCATT+TGG | 0.319767 | 1_4:+28451504 | None:intergenic |
| TCGCCGAATATAGGATTTCT+TGG | 0.320198 | 1_4:-28453386 | Msa0158760:CDS |
| CAAGCTGCTTTCGGTACTTA+TGG | 0.330779 | 1_4:-28451930 | Msa0158760:CDS |
| TGGCTATTCTTCCCACTGTT+TGG | 0.332742 | 1_4:-28451434 | Msa0158760:CDS |
| GGTTTGGTAATGTCATTAAT+CGG | 0.336891 | 1_4:-28449921 | Msa0158760:CDS |
| CCAAATGCATACTTAAGTTT+GGG | 0.340639 | 1_4:-28451504 | Msa0158760:CDS |
| GACATTGGCCAAGCTGCTTT+CGG | 0.342012 | 1_4:-28451939 | Msa0158760:CDS |
| ATGAACTTCATGAGATATCT+TGG | 0.346784 | 1_4:+28453172 | None:intergenic |
| CCATAGCTGTATACAGATTT+GGG | 0.348754 | 1_4:+28451085 | None:intergenic |
| GATAAATGCATTATTGCATT+TGG | 0.369045 | 1_4:-28448980 | Msa0158760:three_prime_UTR |
| CCATAGAGACCAACAGCAAC+AGG | 0.370040 | 1_4:+28451135 | None:intergenic |
| CCACCTTCTTTGAGAGCATA+AGG | 0.374052 | 1_4:+28452068 | None:intergenic |
| TAACTTCACCAAACTTCAAA+AGG | 0.374910 | 1_4:+28449103 | None:intergenic |
| CAGTTATATGAACTGGAATC+TGG | 0.379438 | 1_4:+28449255 | None:intergenic |
| CCATGCCATGCTGTAAGAAC+TGG | 0.387737 | 1_4:+28454717 | None:intergenic |
| CTCATTGAAGACTTCCTAGA+TGG | 0.388938 | 1_4:+28453206 | None:intergenic |
| TGGCATGGCCTCAAAGTTAC+AGG | 0.394948 | 1_4:-28454702 | Msa0158760:intron |
| CTTGCTGTTGCGTTATTGCT+TGG | 0.395145 | 1_4:-28451991 | Msa0158760:CDS |
| TTCTGCCTCCCTTGATGCTT+AGG | 0.395362 | 1_4:+28449754 | None:intergenic |
| TCTAAAACAGTTATATGAAC+TGG | 0.397259 | 1_4:+28449248 | None:intergenic |
| ACCAAGTCAAGAGTACTTTA+GGG | 0.401734 | 1_4:+28451046 | None:intergenic |
| AAGAATTCTCCTTCAGATCA+AGG | 0.403988 | 1_4:-28454853 | Msa0158760:CDS |
| TCTTCCCACTGTTTGGCTCC+GGG | 0.404832 | 1_4:-28451427 | Msa0158760:CDS |
| GAAGAGAAGGTGTTGGGAAG+AGG | 0.408001 | 1_4:-28454805 | Msa0158760:CDS |
| TTCTTCCCACTGTTTGGCTC+CGG | 0.408814 | 1_4:-28451428 | Msa0158760:CDS |
| CAACAGCAAGCCAGTGTAGA+AGG | 0.416466 | 1_4:+28452004 | None:intergenic |
| AGTGGTACTGTGCTTGTTGT+GGG | 0.419401 | 1_4:-28451223 | Msa0158760:CDS |
| CTCTATGGTTACTGCTTCGC+TGG | 0.421890 | 1_4:-28451120 | Msa0158760:CDS |
| CAAAGAAGTAATTTAAATAG+TGG | 0.427519 | 1_4:-28455145 | Msa0158760:five_prime_UTR |
| GTTCCAAGAAATCCTATATT+CGG | 0.429906 | 1_4:+28453383 | None:intergenic |
| GTGGTTTCTACACTGCTTGT+TGG | 0.437821 | 1_4:-28450139 | Msa0158760:CDS |
| TCAACATTCCCTGTTGCTGT+TGG | 0.442672 | 1_4:-28451144 | Msa0158760:CDS |
| AGGCAATCCATTGATCTGTA+TGG | 0.443304 | 1_4:-28453419 | Msa0158760:CDS |
| ATTGATGAATGCGACTCAAA+AGG | 0.447969 | 1_4:+28455090 | None:intergenic |
| ATTTCTTGGAACGACATCAT+TGG | 0.448111 | 1_4:-28453372 | Msa0158760:CDS |
| TCCTCTAGTGACAATGCTAC+TGG | 0.451627 | 1_4:+28450223 | None:intergenic |
| GTTAACTCAAAATTTGGGGT+TGG | 0.457649 | 1_4:+28449214 | None:intergenic |
| TTGATGAATGCGACTCAAAA+GGG | 0.468974 | 1_4:+28455091 | None:intergenic |
| CACCTTCTTTGAGAGCATAA+GGG | 0.471215 | 1_4:+28452069 | None:intergenic |
| TATTGTTCCTTCTGTATGCA+TGG | 0.471552 | 1_4:+28451179 | None:intergenic |
| TAGTGGTACTGTGCTTGTTG+TGG | 0.473014 | 1_4:-28451224 | Msa0158760:CDS |
| AGGCAGAATCAAGCGCTCTC+AGG | 0.479863 | 1_4:-28449739 | Msa0158760:intron |
| GATGGAGTAGAACTGAAAGT+TGG | 0.481778 | 1_4:+28450180 | None:intergenic |
| AGCGTGCCATCGCCGAATAT+AGG | 0.485846 | 1_4:-28453395 | Msa0158760:CDS |
| GTACTGTGCTTGTTGTGGGT+TGG | 0.486084 | 1_4:-28451219 | Msa0158760:CDS |
| GTTTGGTAATGTCATTAATC+GGG | 0.487599 | 1_4:-28449920 | Msa0158760:CDS |
| AATGACTCTGATGAAAATGA+AGG | 0.491545 | 1_4:-28454751 | Msa0158760:CDS |
| ATGGAGTAGAACTGAAAGTT+GGG | 0.494516 | 1_4:+28450181 | None:intergenic |
| AAAGCAGCTTGGCCAATGTC+AGG | 0.494911 | 1_4:+28451942 | None:intergenic |
| TCAGGATAGGTTTCAAGTCC+AGG | 0.496126 | 1_4:+28451960 | None:intergenic |
| TGCTTGTTTCCTAAGCATCA+AGG | 0.496356 | 1_4:-28449763 | Msa0158760:CDS |
| GTCCCTTATGCTCTCAAAGA+AGG | 0.496708 | 1_4:-28452071 | Msa0158760:CDS |
| TGCTTCCTCCCCTACCATCT+AGG | 0.499993 | 1_4:-28453220 | Msa0158760:CDS |
| TGAAGACTTCCTAGATGGTA+GGG | 0.501724 | 1_4:+28453211 | None:intergenic |
| GCAAACAAATGTCATAATCC+AGG | 0.503384 | 1_4:+28449289 | None:intergenic |
| CCCAAATCTGTATACAGCTA+TGG | 0.509125 | 1_4:-28451085 | Msa0158760:CDS |
| TGAACTTCATGAGATATCTT+GGG | 0.512081 | 1_4:+28453173 | None:intergenic |
| TGAAAGTTGGGATTATTTGG+TGG | 0.515485 | 1_4:+28450193 | None:intergenic |
| ACAAGCAGATGGTAGAATAA+GGG | 0.516078 | 1_4:+28449779 | None:intergenic |
| TCCCTAAAGTACTCTTGACT+TGG | 0.516343 | 1_4:-28451047 | Msa0158760:intron |
| GCAGGCATAAATGCTCTTTG+TGG | 0.520606 | 1_4:-28452110 | Msa0158760:intron |
| CACGCTACCATACAGATCAA+TGG | 0.521027 | 1_4:+28453412 | None:intergenic |
| AGTGAATGATGGAAATGAAT+CGG | 0.521529 | 1_4:-28454782 | Msa0158760:CDS |
| GGAACTGACCTGTAACTTTG+AGG | 0.523030 | 1_4:+28454694 | None:intergenic |
| ATGCTCTCAAAGAAGGTGGA+TGG | 0.526983 | 1_4:-28452064 | Msa0158760:CDS |
| GAGTGATGAAGATGAAGAGA+AGG | 0.528291 | 1_4:-28454818 | Msa0158760:CDS |
| TTGAAGACTTCCTAGATGGT+AGG | 0.530221 | 1_4:+28453210 | None:intergenic |
| ATTGTTCCTTCTGTATGCAT+GGG | 0.532915 | 1_4:+28451180 | None:intergenic |
| AATGCATACTTAAGTTTGGG+TGG | 0.533747 | 1_4:-28451501 | Msa0158760:CDS |
| TTGGGAAGAGGAGTGAATGA+TGG | 0.539442 | 1_4:-28454793 | Msa0158760:CDS |
| TGCTCTCAAAGAAGGTGGAT+GGG | 0.540284 | 1_4:-28452063 | Msa0158760:CDS |
| TATTGCTTGGATAGTCAACC+TGG | 0.540934 | 1_4:-28451978 | Msa0158760:CDS |
| CATAAGTACCGAAAGCAGCT+TGG | 0.541498 | 1_4:+28451931 | None:intergenic |
| AACTTAGAATGCGAAGGTCC+CGG | 0.543118 | 1_4:+28451409 | None:intergenic |
| GAAGATGAAGAGAAGGTGTT+GGG | 0.544871 | 1_4:-28454811 | Msa0158760:CDS |
| GTTTGCAATCTTAAGCACAT+TGG | 0.547652 | 1_4:-28451454 | Msa0158760:CDS |
| AACTTCACCAAACTTCAAAA+GGG | 0.555934 | 1_4:+28449104 | None:intergenic |
| TGGATCATACTCAGCCATCT+CGG | 0.556651 | 1_4:-28449355 | Msa0158760:CDS |
| TGAGAGCATAAGGGACTGAA+AGG | 0.558425 | 1_4:+28452078 | None:intergenic |
| GCTTGTTTCCTAAGCATCAA+GGG | 0.562510 | 1_4:-28449762 | Msa0158760:CDS |
| CGATGCTGCTCGTCGACCGA+CGG | 0.563706 | 1_4:+28453260 | None:intergenic |
| GTGCTTGTTGTGGGTTGGAG+TGG | 0.564481 | 1_4:-28451214 | Msa0158760:CDS |
| GATGCATAGAATTGTGGATG+AGG | 0.569060 | 1_4:-28449007 | Msa0158760:three_prime_UTR |
| CTGCATCAGAACAGCACTAG+TGG | 0.570072 | 1_4:-28450158 | Msa0158760:CDS |
| TTCTGCAATCATCTCCGAGA+TGG | 0.572306 | 1_4:+28449341 | None:intergenic |
| ATAAATGCTCTTTGTGGTGT+GGG | 0.576598 | 1_4:-28452104 | Msa0158760:CDS |
| CATGCCATGCTGTAAGAACT+GGG | 0.578369 | 1_4:+28454718 | None:intergenic |
| TGTCCAAAAGTGCATTGACC+AGG | 0.579551 | 1_4:+28453146 | None:intergenic |
| CTTGAAACCTATCCTGACAT+TGG | 0.579886 | 1_4:-28451954 | Msa0158760:CDS |
| TAGGAAGTCTTCAATGAGGA+AGG | 0.580300 | 1_4:-28453201 | Msa0158760:CDS |
| TGAAGATGAAGAGAAGGTGT+TGG | 0.584366 | 1_4:-28454812 | Msa0158760:CDS |
| GATACAGGTGATATTATACA+TGG | 0.584831 | 1_4:-28451797 | Msa0158760:intron |
| AAAAGTTAACTCAAAATTTG+GGG | 0.589328 | 1_4:+28449210 | None:intergenic |
| TTAATCATATACTGTGGCAG+AGG | 0.591050 | 1_4:-28449083 | Msa0158760:three_prime_UTR |
| AGTGATTGCAACGGTTGTAG+TGG | 0.598466 | 1_4:-28451241 | Msa0158760:CDS |
| AGCTTGGCCAATGTCAGGAT+AGG | 0.604020 | 1_4:+28451947 | None:intergenic |
| CCTTATGCTCTCAAAGAAGG+TGG | 0.608297 | 1_4:-28452068 | Msa0158760:CDS |
| GACTTCCTAGATGGTAGGGG+AGG | 0.608744 | 1_4:+28453215 | None:intergenic |
| ACGACATCATTGGCAAGATT+AGG | 0.608787 | 1_4:-28453362 | Msa0158760:CDS |
| TTCTCGGTTCAACATTGACA+AGG | 0.609505 | 1_4:-28453331 | Msa0158760:CDS |
| AGAAATCCTATATTCGGCGA+TGG | 0.610731 | 1_4:+28453389 | None:intergenic |
| TAGTGCTGTTCTGATGCAGA+TGG | 0.611097 | 1_4:+28450162 | None:intergenic |
| ATAGTAGGTCTTGTATCATG+CGG | 0.615478 | 1_4:-28449381 | Msa0158760:CDS |
| TCCAGTAGCATTGTCACTAG+AGG | 0.618076 | 1_4:-28450224 | Msa0158760:CDS |
| TCGACCGACGGTGGTAGCAG+AGG | 0.622099 | 1_4:+28453272 | None:intergenic |
| GAAGACTTCCTAGATGGTAG+GGG | 0.625696 | 1_4:+28453212 | None:intergenic |
| GATGTTCCCATGCATACAGA+AGG | 0.625864 | 1_4:-28451186 | Msa0158760:CDS |
| CATAAATGCTCTTTGTGGTG+TGG | 0.626615 | 1_4:-28452105 | Msa0158760:CDS |
| TGTGTTACAGTGGTTATAGT+AGG | 0.628179 | 1_4:-28449396 | Msa0158760:CDS |
| GAAGCAATATCTGAGAGCTA+CGG | 0.628664 | 1_4:+28453237 | None:intergenic |
| AGGTCCCGGAGCCAAACAGT+GGG | 0.628926 | 1_4:+28451423 | None:intergenic |
| GAGACCCAGTTCTTACAGCA+TGG | 0.629381 | 1_4:-28454722 | Msa0158760:CDS |
| CTGATGAAAATGAAGGAGAG+AGG | 0.629677 | 1_4:-28454744 | Msa0158760:CDS |
| ATATGTAACTTAGAATGCGA+AGG | 0.630484 | 1_4:+28451403 | None:intergenic |
| TGCTGCTCGTCGACCGACGG+TGG | 0.633002 | 1_4:+28453263 | None:intergenic |
| AAGGTCCCGGAGCCAAACAG+TGG | 0.634699 | 1_4:+28451422 | None:intergenic |
| CCAGTTCTTACAGCATGGCA+TGG | 0.635296 | 1_4:-28454717 | Msa0158760:CDS |
| ATGCTTAGGAAACAAGCAGA+TGG | 0.636166 | 1_4:+28449768 | None:intergenic |
| CATAGAGACCAACAGCAACA+GGG | 0.640777 | 1_4:+28451136 | None:intergenic |
| AGTTAGACTCAAAGCATATG+TGG | 0.647151 | 1_4:+28450246 | None:intergenic |
| AAAGCCTCTGCTACCACCGT+CGG | 0.660358 | 1_4:-28453276 | Msa0158760:CDS |
| GTGAAGTTAATCATATACTG+TGG | 0.661411 | 1_4:-28449089 | Msa0158760:three_prime_UTR |
| TCTTCATACAATCTCAGACA+TGG | 0.664289 | 1_4:+28449059 | None:intergenic |
| TCGGTTCAACATTGACAAGG+AGG | 0.668951 | 1_4:-28453328 | Msa0158760:CDS |
| GGTACTACTATGTGTTACAG+TGG | 0.680801 | 1_4:-28449406 | Msa0158760:CDS |
| CATCTAGGAAGTCTTCAATG+AGG | 0.689212 | 1_4:-28453205 | Msa0158760:CDS |
| TGTTTCCTAAGCATCAAGGG+AGG | 0.709220 | 1_4:-28449759 | Msa0158760:CDS |
| AGCTTGCGGAGTGATTGCAA+CGG | 0.713954 | 1_4:-28451250 | Msa0158760:CDS |
| CAGAAGGAACAATAACACTG+AGG | 0.765802 | 1_4:-28451170 | Msa0158760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTACTTTTTATTTTATTTTT+TGG | - | chr1_4:28454636-28454655 | Msa0158760:intron | 10.0% |
| !!! | TATTTTACTTTCTACATATT+TGG | + | chr1_4:28449950-28449969 | None:intergenic | 15.0% |
| !! | ATATGTAGAAAGTAAAATAA+AGG | - | chr1_4:28449951-28449970 | Msa0158760:intron | 15.0% |
| !! | AAACAGTAATTAAATTACTT+TGG | - | chr1_4:28450101-28450120 | Msa0158760:intron | 15.0% |
| !!! | GTTAAATTTTCTTAAACTTT+TGG | + | chr1_4:28450599-28450618 | None:intergenic | 15.0% |
| !! | TATTTACAGATGTTTATATT+TGG | - | chr1_4:28451232-28451251 | Msa0158760:CDS | 15.0% |
| !!! | TAAATGTTTTATTCATGTTT+TGG | - | chr1_4:28452003-28452022 | Msa0158760:CDS | 15.0% |
| !!! | AAATGTTTTATTCATGTTTT+GGG | - | chr1_4:28452004-28452023 | Msa0158760:CDS | 15.0% |
| !! | CATACAAATGAAAAATAAAA+AGG | + | chr1_4:28452328-28452347 | None:intergenic | 15.0% |
| !! | TATCTATGAATTAATTTATC+TGG | - | chr1_4:28452496-28452515 | Msa0158760:intron | 15.0% |
| !! | TGCATAATAATAGATATTTA+TGG | + | chr1_4:28452565-28452584 | None:intergenic | 15.0% |
| !! | ATAAATATCTATTATTATGC+AGG | - | chr1_4:28452564-28452583 | Msa0158760:intron | 15.0% |
| !!! | TTTAGTTGATATATCATATA+TGG | + | chr1_4:28453183-28453202 | None:intergenic | 15.0% |
| !!! | ATTTTATATAGCACTTATAA+AGG | + | chr1_4:28453692-28453711 | None:intergenic | 15.0% |
| !! | CACTATTTAAATTACTTCTT+TGG | + | chr1_4:28449001-28449020 | None:intergenic | 20.0% |
| !! | CAAAGAAGTAATTTAAATAG+TGG | - | chr1_4:28448999-28449018 | Msa0158760:three_prime_UTR | 20.0% |
| !!! | TCATTTGTTTTATGATTCTA+CGG | - | chr1_4:28449171-28449190 | Msa0158760:three_prime_UTR | 20.0% |
| !!! | ATTCTGTGTAATTTTCTATA+AGG | - | chr1_4:28449228-28449247 | Msa0158760:three_prime_UTR | 20.0% |
| !!! | TAATTTTCTATAAGGTGAAT+TGG | - | chr1_4:28449236-28449255 | Msa0158760:three_prime_UTR | 20.0% |
| !!! | GCAAAATAGTGAATTTTTAT+TGG | - | chr1_4:28449617-28449636 | Msa0158760:intron | 20.0% |
| !! | AACATATACTAACATTAGTA+AGG | + | chr1_4:28450054-28450073 | None:intergenic | 20.0% |
| !! | TTTGTCAAAGAAAAAAAACT+AGG | - | chr1_4:28450217-28450236 | Msa0158760:CDS | 20.0% |
| !! | TTGTCAAAGAAAAAAAACTA+GGG | - | chr1_4:28450218-28450237 | Msa0158760:CDS | 20.0% |
| !! | GTACGTTCTAATATATTATT+CGG | + | chr1_4:28450373-28450392 | None:intergenic | 20.0% |
| !!! | AATTTTTTAACTATTCACCA+AGG | + | chr1_4:28451105-28451124 | None:intergenic | 20.0% |
| !! | GTAAATATTTCAATTTCACT+AGG | + | chr1_4:28451219-28451238 | None:intergenic | 20.0% |
| !! | TTGTAGCATATATATTTGAT+TGG | + | chr1_4:28451353-28451372 | None:intergenic | 20.0% |
| !!! | TGAAAAAGAGTGTTATTTTT+TGG | + | chr1_4:28451613-28451632 | None:intergenic | 20.0% |
| !!! | CAATTTTCTCTTTGATAATA+GGG | + | chr1_4:28451737-28451756 | None:intergenic | 20.0% |
| !!! | TCAATTTTCTCTTTGATAAT+AGG | + | chr1_4:28451738-28451757 | None:intergenic | 20.0% |
| !!! | TGGTTTTAAATTAACTTTGA+CGG | + | chr1_4:28452284-28452303 | None:intergenic | 20.0% |
| !! | CAAATGAAAAATAAAAAGGA+AGG | + | chr1_4:28452324-28452343 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTTGTATGATAC+AGG | - | chr1_4:28452332-28452351 | Msa0158760:intron | 20.0% |
| !!! | TGAATTAATTTATCTGGAAT+TGG | - | chr1_4:28452502-28452521 | Msa0158760:intron | 20.0% |
| !! | TATAAAGGATATTTGGTAAA+TGG | + | chr1_4:28453677-28453696 | None:intergenic | 20.0% |
| !! | GTAGACAAAATATTAAAAGA+CGG | + | chr1_4:28454076-28454095 | None:intergenic | 20.0% |
| !! | GATAACAAAGAAATATGATA+AGG | - | chr1_4:28454127-28454146 | Msa0158760:intron | 20.0% |
| !! | AAAAGTTAACTCAAAATTTG+GGG | + | chr1_4:28454937-28454956 | None:intergenic | 20.0% |
| !! | GAAAAGTTAACTCAAAATTT+GGG | + | chr1_4:28454938-28454957 | None:intergenic | 20.0% |
| !! | TGAAAAGTTAACTCAAAATT+TGG | + | chr1_4:28454939-28454958 | None:intergenic | 20.0% |
| !! | CACAAGTAAAAGTAAAAAAA+TGG | + | chr1_4:28454977-28454996 | None:intergenic | 20.0% |
| !!! | CATTTTTTTACTTTTACTTG+TGG | - | chr1_4:28454975-28454994 | Msa0158760:intron | 20.0% |
| !!! | AGAGATCAAATGTTTTATTA+AGG | - | chr1_4:28455105-28455124 | Msa0158760:five_prime_UTR | 20.0% |
| !!! | GAGATCAAATGTTTTATTAA+GGG | - | chr1_4:28455106-28455125 | Msa0158760:five_prime_UTR | 20.0% |
| !!! | AGATCAAATGTTTTATTAAG+GGG | - | chr1_4:28455107-28455126 | Msa0158760:five_prime_UTR | 20.0% |
| ! | AAATGTGACAAAGATGAAAT+TGG | + | chr1_4:28449086-28449105 | None:intergenic | 25.0% |
| !! | ATCTTTGTCACATTTTCATA+AGG | - | chr1_4:28449091-28449110 | Msa0158760:three_prime_UTR | 25.0% |
| ! | TTTGTATCTTACCAACATTA+AGG | - | chr1_4:28449142-28449161 | Msa0158760:three_prime_UTR | 25.0% |
| !!! | CATTTGTTTTATGATTCTAC+GGG | - | chr1_4:28449172-28449191 | Msa0158760:three_prime_UTR | 25.0% |
| !!! | ATTTGTTTTATGATTCTACG+GGG | - | chr1_4:28449173-28449192 | Msa0158760:three_prime_UTR | 25.0% |
| ! | AAACAATTCAGAAAACACAA+AGG | + | chr1_4:28449474-28449493 | None:intergenic | 25.0% |
| ! | CATACCATCAATTTCAAAAA+TGG | - | chr1_4:28449585-28449604 | Msa0158760:intron | 25.0% |
| ! | GAAGTAAGATGATTGATATT+TGG | - | chr1_4:28449726-28449745 | Msa0158760:intron | 25.0% |
| ! | CATACACTATATCTGATAAA+AGG | + | chr1_4:28449808-28449827 | None:intergenic | 25.0% |
| ! | TACTTTCTACATATTTGGAT+TGG | + | chr1_4:28449945-28449964 | None:intergenic | 25.0% |
| ! | AAAGTAAAATAAAGGTTTCG+AGG | - | chr1_4:28449959-28449978 | Msa0158760:intron | 25.0% |
| ! | AAATAGCTGTTAACAATAGT+AGG | - | chr1_4:28450124-28450143 | Msa0158760:CDS | 25.0% |
| ! | TAAAATGTATTCCTACTTGA+AGG | + | chr1_4:28450158-28450177 | None:intergenic | 25.0% |
| !!! | TACGCAAGTTTTAAAGAATT+GGG | + | chr1_4:28450439-28450458 | None:intergenic | 25.0% |
| ! | GGTATATGATCAATTTAACA+TGG | - | chr1_4:28450514-28450533 | Msa0158760:intron | 25.0% |
| ! | GATGTTGTGATTAAAATTTC+AGG | - | chr1_4:28450705-28450724 | Msa0158760:intron | 25.0% |
| ! | ATGAAACTAAATATCACACA+AGG | + | chr1_4:28451059-28451078 | None:intergenic | 25.0% |
| ! | AAATTTGTCATTGAAAGAAG+AGG | - | chr1_4:28451120-28451139 | Msa0158760:CDS | 25.0% |
| ! | TTGAAAGAAGAGGTAATTAA+TGG | - | chr1_4:28451130-28451149 | Msa0158760:CDS | 25.0% |
| !! | TTGGAAGCATAGTTATTTAA+TGG | - | chr1_4:28451251-28451270 | Msa0158760:CDS | 25.0% |
| !! | GAGAAATGTTCAATTTTACA+GGG | + | chr1_4:28451487-28451506 | None:intergenic | 25.0% |
| !! | TGAGAAATGTTCAATTTTAC+AGG | + | chr1_4:28451488-28451507 | None:intergenic | 25.0% |
| !!! | GTTATTTTTTGGTCTTTCAA+GGG | + | chr1_4:28451602-28451621 | None:intergenic | 25.0% |
| !!! | TGTTATTTTTTGGTCTTTCA+AGG | + | chr1_4:28451603-28451622 | None:intergenic | 25.0% |
| !!! | GTTCCTGTTTTAAGATTAAA+AGG | + | chr1_4:28451707-28451726 | None:intergenic | 25.0% |
| ! | CATTTATACTACGTTATGAT+GGG | + | chr1_4:28451989-28452008 | None:intergenic | 25.0% |
| ! | ACATTTATACTACGTTATGA+TGG | + | chr1_4:28451990-28452009 | None:intergenic | 25.0% |
| ! | GAAAATGAGAACATGTAAAA+AGG | + | chr1_4:28452262-28452281 | None:intergenic | 25.0% |
| ! | AGGTAAGACATAAGAAATAA+TGG | + | chr1_4:28452304-28452323 | None:intergenic | 25.0% |
| ! | TGCTATGACAAATAACAATA+AGG | + | chr1_4:28452394-28452413 | None:intergenic | 25.0% |
| ! | TCATAGATAAATCTAGTACT+TGG | + | chr1_4:28452485-28452504 | None:intergenic | 25.0% |
| ! | AAGAAACTTAAAAGAAATCG+TGG | + | chr1_4:28453362-28453381 | None:intergenic | 25.0% |
| ! | TCTTATTAAACTTTGCTACT+TGG | - | chr1_4:28453597-28453616 | Msa0158760:intron | 25.0% |
| ! | TAGCACTTATAAAGGATATT+TGG | + | chr1_4:28453684-28453703 | None:intergenic | 25.0% |
| ! | AAAATTAGAGCTAAGAGATA+AGG | + | chr1_4:28453747-28453766 | None:intergenic | 25.0% |
| ! | AAAACAGTAAATTTACGACT+TGG | + | chr1_4:28454453-28454472 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGATAGTCAGAT+TGG | + | chr1_4:28454701-28454720 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTCATATTTCTAC+AGG | - | chr1_4:28454717-28454736 | Msa0158760:CDS | 25.0% |
| !! | TCTAAAACAGTTATATGAAC+TGG | + | chr1_4:28454899-28454918 | None:intergenic | 25.0% |
| !!! | CAATACTTTGTTTTGTGATA+TGG | + | chr1_4:28455018-28455037 | None:intergenic | 25.0% |
| !!! | AATTTTGATGCATAGAATTG+TGG | - | chr1_4:28455131-28455150 | Msa0158760:five_prime_UTR | 25.0% |
| ! | GATAAATGCATTATTGCATT+TGG | - | chr1_4:28455164-28455183 | Msa0158760:five_prime_UTR | 25.0% |
| ATCTTACCAACATTAAGGTT+AGG | - | chr1_4:28449147-28449166 | Msa0158760:three_prime_UTR | 30.0% | |
| AATGAACCTAACCTTAATGT+TGG | + | chr1_4:28449156-28449175 | None:intergenic | 30.0% | |
| ATGTAAAAACCTTGATCTGA+AGG | + | chr1_4:28449303-28449322 | None:intergenic | 30.0% | |
| ! | AGTGAATGATGGAAATGAAT+CGG | - | chr1_4:28449362-28449381 | Msa0158760:CDS | 30.0% |
| ! | TTCATTTTCATCAGAGTCAT+TGG | + | chr1_4:28449394-28449413 | None:intergenic | 30.0% |
| AATGACTCTGATGAAAATGA+AGG | - | chr1_4:28449393-28449412 | Msa0158760:CDS | 30.0% | |
| ! | TTGAAATTGATGGTATGACA+TGG | + | chr1_4:28449582-28449601 | None:intergenic | 30.0% |
| !!! | CACTCCATTTTTGAAATTGA+TGG | + | chr1_4:28449592-28449611 | None:intergenic | 30.0% |
| TCAATTTCAAAAATGGAGTG+AGG | - | chr1_4:28449592-28449611 | Msa0158760:intron | 30.0% | |
| ! | TGTAGCTTTTATCAGAATCA+TGG | - | chr1_4:28449890-28449909 | Msa0158760:intron | 30.0% |
| ATCAGAATCATGGTAGAAAA+TGG | - | chr1_4:28449900-28449919 | Msa0158760:CDS | 30.0% | |
| !! | TACATATTTGGATTGGTAGA+TGG | + | chr1_4:28449938-28449957 | None:intergenic | 30.0% |
| ACATGACTTTAGTGAAATCT+GGG | + | chr1_4:28450018-28450037 | None:intergenic | 30.0% | |
| AACATGACTTTAGTGAAATC+TGG | + | chr1_4:28450019-28450038 | None:intergenic | 30.0% | |
| GATTTCACTAAAGTCATGTT+TGG | - | chr1_4:28450019-28450038 | Msa0158760:intron | 30.0% | |
| ! | TATGTTGATAAACCATGCAT+AGG | - | chr1_4:28450068-28450087 | Msa0158760:intron | 30.0% |
| AAAACTAGGGAAATTATGCA+AGG | - | chr1_4:28450231-28450250 | Msa0158760:CDS | 30.0% | |
| TTTAAAGAATTGGGTTCGAA+GGG | + | chr1_4:28450430-28450449 | None:intergenic | 30.0% | |
| !! | TTTTAAAGAATTGGGTTCGA+AGG | + | chr1_4:28450431-28450450 | None:intergenic | 30.0% |
| !!! | GTACGCAAGTTTTAAAGAAT+TGG | + | chr1_4:28450440-28450459 | None:intergenic | 30.0% |
| !! | TTGTGATTAGCTTCAGTTTA+TGG | - | chr1_4:28450542-28450561 | Msa0158760:intron | 30.0% |
| GTTCCAAGAAATCCTATATT+CGG | + | chr1_4:28450764-28450783 | None:intergenic | 30.0% | |
| TGAACTTCATGAGATATCTT+GGG | + | chr1_4:28450974-28450993 | None:intergenic | 30.0% | |
| ATGAACTTCATGAGATATCT+TGG | + | chr1_4:28450975-28450994 | None:intergenic | 30.0% | |
| ATTGAAGCACACTAATTGTT+AGG | - | chr1_4:28451179-28451198 | Msa0158760:CDS | 30.0% | |
| TAATCAAACTGAAGTCCTTA+TGG | + | chr1_4:28451413-28451432 | None:intergenic | 30.0% | |
| ACATAACAGATGAAGCTTAT+AGG | + | chr1_4:28451528-28451547 | None:intergenic | 30.0% | |
| GTTATGTGAAGGTAAAATGT+TGG | - | chr1_4:28451541-28451560 | Msa0158760:CDS | 30.0% | |
| ! | TTTTCAGCACACTTTCTTAT+TGG | - | chr1_4:28451627-28451646 | Msa0158760:intron | 30.0% |
| ! | ACTCTTTTATCAGACTCATT+TGG | + | chr1_4:28451660-28451679 | None:intergenic | 30.0% |
| !!! | GTTTTAAGATTAAAAGGCAG+AGG | + | chr1_4:28451701-28451720 | None:intergenic | 30.0% |
| ! | CTGCCTTTTAATCTTAAAAC+AGG | - | chr1_4:28451701-28451720 | Msa0158760:intron | 30.0% |
| CAAGTAATCATTAGACAGTT+AGG | + | chr1_4:28451925-28451944 | None:intergenic | 30.0% | |
| TAATCCTTCCTTAACTGATA+TGG | - | chr1_4:28451954-28451973 | Msa0158760:CDS | 30.0% | |
| GATACAGGTGATATTATACA+TGG | - | chr1_4:28452347-28452366 | Msa0158760:intron | 30.0% | |
| AATTTAAGAGAGTCTCTATG+TGG | - | chr1_4:28452429-28452448 | Msa0158760:intron | 30.0% | |
| TCCAAATGCATACTTAAGTT+TGG | - | chr1_4:28452639-28452658 | Msa0158760:intron | 30.0% | |
| CCAAATGCATACTTAAGTTT+GGG | - | chr1_4:28452640-28452659 | Msa0158760:intron | 30.0% | |
| ATATGTAACTTAGAATGCGA+AGG | + | chr1_4:28452744-28452763 | None:intergenic | 30.0% | |
| CTACAATTTCAAGATCAAAG+TGG | + | chr1_4:28453158-28453177 | None:intergenic | 30.0% | |
| CACTTTGATCTTGAAATTGT+AGG | - | chr1_4:28453156-28453175 | Msa0158760:CDS | 30.0% | |
| CTGACAATGTGTTTATAAGT+GGG | - | chr1_4:28453287-28453306 | Msa0158760:CDS | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | - | chr1_4:28453288-28453307 | Msa0158760:CDS | 30.0% | |
| ACTTAAAAGAAATCGTGGTT+GGG | + | chr1_4:28453357-28453376 | None:intergenic | 30.0% | |
| AACTTAAAAGAAATCGTGGT+TGG | + | chr1_4:28453358-28453377 | None:intergenic | 30.0% | |
| ! | TTAGAGGGTACATAAATTAG+AGG | + | chr1_4:28453846-28453865 | None:intergenic | 30.0% |
| AACTGAAAGTTGGGATTATT+TGG | + | chr1_4:28453957-28453976 | None:intergenic | 30.0% | |
| ATGAAAGACTAACCGAAAAA+GGG | + | chr1_4:28454041-28454060 | None:intergenic | 30.0% | |
| AATGAAAGACTAACCGAAAA+AGG | + | chr1_4:28454042-28454061 | None:intergenic | 30.0% | |
| ! | TGATTTTATTGTTGCACTGT+TGG | - | chr1_4:28454186-28454205 | Msa0158760:intron | 30.0% |
| !! | GGTTTGGTAATGTCATTAAT+CGG | - | chr1_4:28454223-28454242 | Msa0158760:intron | 30.0% |
| !! | GTTTGGTAATGTCATTAATC+GGG | - | chr1_4:28454224-28454243 | Msa0158760:intron | 30.0% |
| CTGAATCAAACAGTTAATGA+AGG | + | chr1_4:28454279-28454298 | None:intergenic | 30.0% | |
| TATCGGGTTTAAGTAAACAA+AGG | - | chr1_4:28454571-28454590 | Msa0158760:intron | 30.0% | |
| !! | TTTTTGTATCGATATCAGCA+CGG | + | chr1_4:28454616-28454635 | None:intergenic | 30.0% |
| AAAAAAGATAGTCAGATTGG+CGG | + | chr1_4:28454698-28454717 | None:intergenic | 30.0% | |
| GTACCTGTAGAAATATGAAA+AGG | + | chr1_4:28454723-28454742 | None:intergenic | 30.0% | |
| ! | AATGTTTGCATGAAGTTTTG+CGG | - | chr1_4:28454825-28454844 | Msa0158760:CDS | 30.0% |
| AACTTCACCAAACTTCAAAA+GGG | + | chr1_4:28455043-28455062 | None:intergenic | 30.0% | |
| TAACTTCACCAAACTTCAAA+AGG | + | chr1_4:28455044-28455063 | None:intergenic | 30.0% | |
| GTGAAGTTAATCATATACTG+TGG | - | chr1_4:28455055-28455074 | Msa0158760:intron | 30.0% | |
| TTGATGAATGCGACTCAAAA+GGG | + | chr1_4:28449056-28449075 | None:intergenic | 35.0% | |
| ATTGATGAATGCGACTCAAA+AGG | + | chr1_4:28449057-28449076 | None:intergenic | 35.0% | |
| AAGAATTCTCCTTCAGATCA+AGG | - | chr1_4:28449291-28449310 | Msa0158760:three_prime_UTR | 35.0% | |
| GATGGTATGACATGGTAAAA+TGG | + | chr1_4:28449574-28449593 | None:intergenic | 35.0% | |
| ATTTCAAAAATGGAGTGAGG+TGG | - | chr1_4:28449595-28449614 | Msa0158760:intron | 35.0% | |
| TTGTTTCAGTTACCTATGCA+TGG | + | chr1_4:28450083-28450102 | None:intergenic | 35.0% | |
| TTAAAGAATTGGGTTCGAAG+GGG | + | chr1_4:28450429-28450448 | None:intergenic | 35.0% | |
| CTTCAGTTTATGGTGAAAAC+AGG | - | chr1_4:28450552-28450571 | Msa0158760:intron | 35.0% | |
| ! | TTGACGCATTTAACTTAAGG+TGG | + | chr1_4:28450668-28450687 | None:intergenic | 35.0% |
| ! | GGTTTGACGCATTTAACTTA+AGG | + | chr1_4:28450671-28450690 | None:intergenic | 35.0% |
| CAACATCAGAACTAGATTTC+AGG | + | chr1_4:28450692-28450711 | None:intergenic | 35.0% | |
| ATTTCTTGGAACGACATCAT+TGG | - | chr1_4:28450772-28450791 | Msa0158760:intron | 35.0% | |
| ! | AGATTAGGCAGTTCTTTTCT+CGG | - | chr1_4:28450797-28450816 | Msa0158760:intron | 35.0% |
| ! | TCTCATGAAGTTCATTTTCC+TGG | - | chr1_4:28450980-28450999 | Msa0158760:intron | 35.0% |
| ACTATTCACCAAGGTAAAGA+GGG | + | chr1_4:28451096-28451115 | None:intergenic | 35.0% | |
| AACTATTCACCAAGGTAAAG+AGG | + | chr1_4:28451097-28451116 | None:intergenic | 35.0% | |
| ATTGAACTCCCATTTCCATA+AGG | - | chr1_4:28451395-28451414 | Msa0158760:intron | 35.0% | |
| ACTGAAGTCCTTATGGAAAT+GGG | + | chr1_4:28451406-28451425 | None:intergenic | 35.0% | |
| AACTGAAGTCCTTATGGAAA+TGG | + | chr1_4:28451407-28451426 | None:intergenic | 35.0% | |
| ACTTCAGTTTGATTACGAGT+CGG | - | chr1_4:28451418-28451437 | Msa0158760:CDS | 35.0% | |
| GCATATGTGAATGTTGCAAA+TGG | - | chr1_4:28451442-28451461 | Msa0158760:CDS | 35.0% | |
| TATGTGAATGTTGCAAATGG+TGG | - | chr1_4:28451445-28451464 | Msa0158760:CDS | 35.0% | |
| AAGCTTCATCTGTTATGTGA+AGG | - | chr1_4:28451530-28451549 | Msa0158760:CDS | 35.0% | |
| GCCATCATTCTCTAACTAAT+TGG | - | chr1_4:28451899-28451918 | Msa0158760:intron | 35.0% | |
| GCCAATTAGTTAGAGAATGA+TGG | + | chr1_4:28451903-28451922 | None:intergenic | 35.0% | |
| CTATCACACCATATCAGTTA+AGG | + | chr1_4:28451965-28451984 | None:intergenic | 35.0% | |
| ATAAATGCTCTTTGTGGTGT+GGG | - | chr1_4:28452040-28452059 | Msa0158760:CDS | 35.0% | |
| ! | TCAGTATTTTCCTTCTACAC+TGG | - | chr1_4:28452130-28452149 | Msa0158760:intron | 35.0% |
| CCCAAACTTAAGTATGCATT+TGG | + | chr1_4:28452643-28452662 | None:intergenic | 35.0% | |
| AATGCATACTTAAGTTTGGG+TGG | - | chr1_4:28452643-28452662 | Msa0158760:intron | 35.0% | |
| GTTTGCAATCTTAAGCACAT+TGG | - | chr1_4:28452690-28452709 | Msa0158760:intron | 35.0% | |
| CGCATTCTAAGTTACATATC+AGG | - | chr1_4:28452745-28452764 | Msa0158760:intron | 35.0% | |
| TATTGTTCCTTCTGTATGCA+TGG | + | chr1_4:28452968-28452987 | None:intergenic | 35.0% | |
| CCATAGCTGTATACAGATTT+GGG | + | chr1_4:28453062-28453081 | None:intergenic | 35.0% | |
| !! | ACCAAGTCAAGAGTACTTTA+GGG | + | chr1_4:28453101-28453120 | None:intergenic | 35.0% |
| !! | TACCAAGTCAAGAGTACTTT+AGG | + | chr1_4:28453102-28453121 | None:intergenic | 35.0% |
| CCACTTATAAACACATTGTC+AGG | + | chr1_4:28453289-28453308 | None:intergenic | 35.0% | |
| CCTGACAATGTGTTTATAAG+TGG | - | chr1_4:28453286-28453305 | Msa0158760:CDS | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | - | chr1_4:28453289-28453308 | Msa0158760:CDS | 35.0% | |
| TATACTCTTAACATGCCTCA+AGG | - | chr1_4:28453499-28453518 | Msa0158760:intron | 35.0% | |
| !!! | TATCGTGTGTTTTGTTTTGC+AGG | - | chr1_4:28453643-28453662 | Msa0158760:intron | 35.0% |
| ATTAGAGCTAAGAGATAAGG+TGG | + | chr1_4:28453744-28453763 | None:intergenic | 35.0% | |
| !! | CATCCACTTTTCATCTTAGA+GGG | + | chr1_4:28453861-28453880 | None:intergenic | 35.0% |
| !! | ACATCCACTTTTCATCTTAG+AGG | + | chr1_4:28453862-28453881 | None:intergenic | 35.0% |
| AGTTAGACTCAAAGCATATG+TGG | + | chr1_4:28453901-28453920 | None:intergenic | 35.0% | |
| TGAAAGTTGGGATTATTTGG+TGG | + | chr1_4:28453954-28453973 | None:intergenic | 35.0% | |
| ATGGAGTAGAACTGAAAGTT+GGG | + | chr1_4:28453966-28453985 | None:intergenic | 35.0% | |
| !! | CTGTTGGATTATGTTTTTGC+AGG | - | chr1_4:28454202-28454221 | Msa0158760:intron | 35.0% |
| !! | GGATTATGTTTTTGCAGGTT+TGG | - | chr1_4:28454207-28454226 | Msa0158760:intron | 35.0% |
| AGAATAAGGGACTGCATTAA+TGG | + | chr1_4:28454355-28454374 | None:intergenic | 35.0% | |
| ACAAGCAGATGGTAGAATAA+GGG | + | chr1_4:28454368-28454387 | None:intergenic | 35.0% | |
| AACAAGCAGATGGTAGAATA+AGG | + | chr1_4:28454369-28454388 | None:intergenic | 35.0% | |
| ! | AGCTTTAGTCTGTTGATACA+TGG | - | chr1_4:28454547-28454566 | Msa0158760:intron | 35.0% |
| GTCTGTTGATACATGGTTAT+CGG | - | chr1_4:28454554-28454573 | Msa0158760:intron | 35.0% | |
| TCTGTTGATACATGGTTATC+GGG | - | chr1_4:28454555-28454574 | Msa0158760:intron | 35.0% | |
| TGTGTTACAGTGGTTATAGT+AGG | - | chr1_4:28454748-28454767 | Msa0158760:CDS | 35.0% | |
| ! | ATAGTAGGTCTTGTATCATG+CGG | - | chr1_4:28454763-28454782 | Msa0158760:CDS | 35.0% |
| GCAAACAAATGTCATAATCC+AGG | + | chr1_4:28454858-28454877 | None:intergenic | 35.0% | |
| CAGTTATATGAACTGGAATC+TGG | + | chr1_4:28454892-28454911 | None:intergenic | 35.0% | |
| ! | GTTAACTCAAAATTTGGGGT+TGG | + | chr1_4:28454933-28454952 | None:intergenic | 35.0% |
| ! | AGTTAACTTTTCACTCTCAG+TGG | - | chr1_4:28454946-28454965 | Msa0158760:intron | 35.0% |
| ! | ACTTTTACTTGTGGTTATCG+CGG | - | chr1_4:28454984-28455003 | Msa0158760:intron | 35.0% |
| !!! | TATTGCTCCCTTTTGAAGTT+TGG | - | chr1_4:28455033-28455052 | Msa0158760:five_prime_UTR | 35.0% |
| TTAATCATATACTGTGGCAG+AGG | - | chr1_4:28455061-28455080 | Msa0158760:intron | 35.0% | |
| TCTTCATACAATCTCAGACA+TGG | + | chr1_4:28455088-28455107 | None:intergenic | 35.0% | |
| GAGTGATGAAGATGAAGAGA+AGG | - | chr1_4:28449326-28449345 | Msa0158760:exon | 40.0% | |
| ! | TGAAGATGAAGAGAAGGTGT+TGG | - | chr1_4:28449332-28449351 | Msa0158760:CDS | 40.0% |
| !! | GAAGATGAAGAGAAGGTGTT+GGG | - | chr1_4:28449333-28449352 | Msa0158760:CDS | 40.0% |
| CTGATGAAAATGAAGGAGAG+AGG | - | chr1_4:28449400-28449419 | Msa0158760:CDS | 40.0% | |
| CCTATCATGTTTCATGCAAG+AGG | + | chr1_4:28449498-28449517 | None:intergenic | 40.0% | |
| CCTCTTGCATGAAACATGAT+AGG | - | chr1_4:28449495-28449514 | Msa0158760:intron | 40.0% | |
| GTAAAATGGCGGTATCTCAT+TGG | + | chr1_4:28449560-28449579 | None:intergenic | 40.0% | |
| GGTATGACATGGTAAAATGG+CGG | + | chr1_4:28449571-28449590 | None:intergenic | 40.0% | |
| ! | TTAGTGAAATCTGGGATGGT+TGG | + | chr1_4:28450010-28450029 | None:intergenic | 40.0% |
| GACTTTAGTGAAATCTGGGA+TGG | + | chr1_4:28450014-28450033 | None:intergenic | 40.0% | |
| ! | AGGAGTACATTCCTTCAAGT+AGG | - | chr1_4:28450144-28450163 | Msa0158760:CDS | 40.0% |
| TAGGGAAATTATGCAAGGCT+CGG | - | chr1_4:28450236-28450255 | Msa0158760:CDS | 40.0% | |
| ACAGAGTCGGTACGTTATTT+GGG | + | chr1_4:28450402-28450421 | None:intergenic | 40.0% | |
| TACAGAGTCGGTACGTTATT+TGG | + | chr1_4:28450403-28450422 | None:intergenic | 40.0% | |
| TAAAGAATTGGGTTCGAAGG+GGG | + | chr1_4:28450428-28450447 | None:intergenic | 40.0% | |
| ! | AACTACGAACTTGGTGACTA+TGG | - | chr1_4:28450493-28450512 | Msa0158760:intron | 40.0% |
| AGGCAATCCATTGATCTGTA+TGG | - | chr1_4:28450725-28450744 | Msa0158760:intron | 40.0% | |
| AGAAATCCTATATTCGGCGA+TGG | + | chr1_4:28450758-28450777 | None:intergenic | 40.0% | |
| TCGCCGAATATAGGATTTCT+TGG | - | chr1_4:28450758-28450777 | Msa0158760:intron | 40.0% | |
| ACGACATCATTGGCAAGATT+AGG | - | chr1_4:28450782-28450801 | Msa0158760:intron | 40.0% | |
| TTCTCGGTTCAACATTGACA+AGG | - | chr1_4:28450813-28450832 | Msa0158760:intron | 40.0% | |
| ! | GGCTGTAAATTTTCAGCAGT+TGG | + | chr1_4:28450842-28450861 | None:intergenic | 40.0% |
| GAAGCAATATCTGAGAGCTA+CGG | + | chr1_4:28450910-28450929 | None:intergenic | 40.0% | |
| TGAAGACTTCCTAGATGGTA+GGG | + | chr1_4:28450936-28450955 | None:intergenic | 40.0% | |
| TTGAAGACTTCCTAGATGGT+AGG | + | chr1_4:28450937-28450956 | None:intergenic | 40.0% | |
| CTCATTGAAGACTTCCTAGA+TGG | + | chr1_4:28450941-28450960 | None:intergenic | 40.0% | |
| CATCTAGGAAGTCTTCAATG+AGG | - | chr1_4:28450939-28450958 | Msa0158760:intron | 40.0% | |
| TAGGAAGTCTTCAATGAGGA+AGG | - | chr1_4:28450943-28450962 | Msa0158760:intron | 40.0% | |
| ! | TTTCCTGGTCAATGCACTTT+TGG | - | chr1_4:28450995-28451014 | Msa0158760:intron | 40.0% |
| TTTGGACAAGCTGTGCTTAA+TGG | - | chr1_4:28451013-28451032 | Msa0158760:intron | 40.0% | |
| ATATCAACCCCTCTTTACCT+TGG | - | chr1_4:28451085-28451104 | Msa0158760:CDS | 40.0% | |
| CTATTCACCAAGGTAAAGAG+GGG | + | chr1_4:28451095-28451114 | None:intergenic | 40.0% | |
| GTCTTTCAAGGGCTATTATG+CGG | + | chr1_4:28451591-28451610 | None:intergenic | 40.0% | |
| CACACCATATCAGTTAAGGA+AGG | + | chr1_4:28451961-28451980 | None:intergenic | 40.0% | |
| CATAAATGCTCTTTGTGGTG+TGG | - | chr1_4:28452039-28452058 | Msa0158760:CDS | 40.0% | |
| ! | CACCTTCTTTGAGAGCATAA+GGG | + | chr1_4:28452078-28452097 | None:intergenic | 40.0% |
| TATTGCTTGGATAGTCAACC+TGG | - | chr1_4:28452166-28452185 | Msa0158760:intron | 40.0% | |
| CTTGAAACCTATCCTGACAT+TGG | - | chr1_4:28452190-28452209 | Msa0158760:intron | 40.0% | |
| ! | TCTTCTGTTGTACTAGCTTG+CGG | - | chr1_4:28452880-28452899 | Msa0158760:intron | 40.0% |
| CAGAAGGAACAATAACACTG+AGG | - | chr1_4:28452974-28452993 | Msa0158760:intron | 40.0% | |
| CCCAAATCTGTATACAGCTA+TGG | - | chr1_4:28453059-28453078 | Msa0158760:intron | 40.0% | |
| GCCATAGCTGTATACAGATT+TGG | + | chr1_4:28453063-28453082 | None:intergenic | 40.0% | |
| ! | TCCCTAAAGTACTCTTGACT+TGG | - | chr1_4:28453097-28453116 | Msa0158760:intron | 40.0% |
| CTAACACAATCCCACAAAAC+TGG | + | chr1_4:28453333-28453352 | None:intergenic | 40.0% | |
| !! | CAGTTTTGTGGGATTGTGTT+AGG | - | chr1_4:28453331-28453350 | Msa0158760:CDS | 40.0% |
| TATTTCACCGTAGCTGTTGT+GGG | - | chr1_4:28453442-28453461 | Msa0158760:intron | 40.0% | |
| GTTGTGGGATACTCAATGTT+TGG | - | chr1_4:28453457-28453476 | Msa0158760:intron | 40.0% | |
| !! | GTACCCTCTAAGATGAAAAG+TGG | - | chr1_4:28453855-28453874 | Msa0158760:intron | 40.0% |
| GATGGAGTAGAACTGAAAGT+TGG | + | chr1_4:28453967-28453986 | None:intergenic | 40.0% | |
| ! | GGTCTTTCAGTTCCCTTTTT+CGG | - | chr1_4:28454026-28454045 | Msa0158760:intron | 40.0% |
| ATGCTTAGGAAACAAGCAGA+TGG | + | chr1_4:28454379-28454398 | None:intergenic | 40.0% | |
| TGCTTGTTTCCTAAGCATCA+AGG | - | chr1_4:28454381-28454400 | Msa0158760:intron | 40.0% | |
| GCTTGTTTCCTAAGCATCAA+GGG | - | chr1_4:28454382-28454401 | Msa0158760:intron | 40.0% | |
| ! | TTTTCCAGATGCAAGTCGTT+TGG | + | chr1_4:28454506-28454525 | None:intergenic | 40.0% |
| GGTACTACTATGTGTTACAG+TGG | - | chr1_4:28454738-28454757 | Msa0158760:CDS | 40.0% | |
| ! | AAGTTTTGCGGCTTAAATCC+TGG | - | chr1_4:28454837-28454856 | Msa0158760:CDS | 40.0% |
| GATGCATAGAATTGTGGATG+AGG | - | chr1_4:28455137-28455156 | Msa0158760:five_prime_UTR | 40.0% | |
| TTGGGAAGAGGAGTGAATGA+TGG | - | chr1_4:28449351-28449370 | Msa0158760:CDS | 45.0% | |
| CATGCCATGCTGTAAGAACT+GGG | + | chr1_4:28449429-28449448 | None:intergenic | 45.0% | |
| GGAACTGACCTGTAACTTTG+AGG | + | chr1_4:28449453-28449472 | None:intergenic | 45.0% | |
| ! | TGAAATCTGGGATGGTTGGT+TGG | + | chr1_4:28450006-28450025 | None:intergenic | 45.0% |
| ACCAAGTTCGTAGTTCGCTT+CGG | + | chr1_4:28450488-28450507 | None:intergenic | 45.0% | |
| CACGCTACCATACAGATCAA+TGG | + | chr1_4:28450735-28450754 | None:intergenic | 45.0% | |
| TCGGTTCAACATTGACAAGG+AGG | - | chr1_4:28450816-28450835 | Msa0158760:intron | 45.0% | |
| GAAGACTTCCTAGATGGTAG+GGG | + | chr1_4:28450935-28450954 | None:intergenic | 45.0% | |
| ! | TGTCCAAAAGTGCATTGACC+AGG | + | chr1_4:28451001-28451020 | None:intergenic | 45.0% |
| !!! | CATGTTTTGGGTTTTGCTGC+AGG | - | chr1_4:28452016-28452035 | Msa0158760:CDS | 45.0% |
| GCAGGCATAAATGCTCTTTG+TGG | - | chr1_4:28452034-28452053 | Msa0158760:CDS | 45.0% | |
| ! | TGAGAGCATAAGGGACTGAA+AGG | + | chr1_4:28452069-28452088 | None:intergenic | 45.0% |
| GTCCCTTATGCTCTCAAAGA+AGG | - | chr1_4:28452073-28452092 | Msa0158760:CDS | 45.0% | |
| ! | CCACCTTCTTTGAGAGCATA+AGG | + | chr1_4:28452079-28452098 | None:intergenic | 45.0% |
| CCTTATGCTCTCAAAGAAGG+TGG | - | chr1_4:28452076-28452095 | Msa0158760:CDS | 45.0% | |
| ATGCTCTCAAAGAAGGTGGA+TGG | - | chr1_4:28452080-28452099 | Msa0158760:CDS | 45.0% | |
| TGCTCTCAAAGAAGGTGGAT+GGG | - | chr1_4:28452081-28452100 | Msa0158760:CDS | 45.0% | |
| !! | CTTGCTGTTGCGTTATTGCT+TGG | - | chr1_4:28452153-28452172 | Msa0158760:intron | 45.0% |
| ! | TCAGGATAGGTTTCAAGTCC+AGG | + | chr1_4:28452187-28452206 | None:intergenic | 45.0% |
| !! | CATAAGTACCGAAAGCAGCT+TGG | + | chr1_4:28452216-28452235 | None:intergenic | 45.0% |
| ! | CAAGCTGCTTTCGGTACTTA+TGG | - | chr1_4:28452214-28452233 | Msa0158760:intron | 45.0% |
| TGGCTATTCTTCCCACTGTT+TGG | - | chr1_4:28452710-28452729 | Msa0158760:intron | 45.0% | |
| AACTTAGAATGCGAAGGTCC+CGG | + | chr1_4:28452738-28452757 | None:intergenic | 45.0% | |
| AGTGATTGCAACGGTTGTAG+TGG | - | chr1_4:28452903-28452922 | Msa0158760:intron | 45.0% | |
| ! | TAGTGGTACTGTGCTTGTTG+TGG | - | chr1_4:28452920-28452939 | Msa0158760:intron | 45.0% |
| !! | AGTGGTACTGTGCTTGTTGT+GGG | - | chr1_4:28452921-28452940 | Msa0158760:intron | 45.0% |
| TCAACATTCCCTGTTGCTGT+TGG | - | chr1_4:28453000-28453019 | Msa0158760:intron | 45.0% | |
| CATAGAGACCAACAGCAACA+GGG | + | chr1_4:28453011-28453030 | None:intergenic | 45.0% | |
| !! | AGGAGTGTCTGTGCTTCATA+GGG | + | chr1_4:28453206-28453225 | None:intergenic | 45.0% |
| CACAGACACTCCTCAGATTA+GGG | - | chr1_4:28453213-28453232 | Msa0158760:CDS | 45.0% | |
| ACAGACACTCCTCAGATTAG+GGG | - | chr1_4:28453214-28453233 | Msa0158760:CDS | 45.0% | |
| TCTTAACAGTGTCCGATACC+GGG | + | chr1_4:28453243-28453262 | None:intergenic | 45.0% | |
| CTCTTAACAGTGTCCGATAC+CGG | + | chr1_4:28453244-28453263 | None:intergenic | 45.0% | |
| CACTGTTAAGAGTCCCACAT+CGG | - | chr1_4:28453252-28453271 | Msa0158760:CDS | 45.0% | |
| TTAAGAGTCCCACATCGGAT+AGG | - | chr1_4:28453257-28453276 | Msa0158760:CDS | 45.0% | |
| !! | ACTTCACACGCCAGTTTTGT+GGG | - | chr1_4:28453320-28453339 | Msa0158760:CDS | 45.0% |
| GTATTTCACCGTAGCTGTTG+TGG | - | chr1_4:28453441-28453460 | Msa0158760:intron | 45.0% | |
| TGAGTATCCCACAACAGCTA+CGG | + | chr1_4:28453452-28453471 | None:intergenic | 45.0% | |
| TTGGAGGCTACTAATCCTTG+AGG | + | chr1_4:28453517-28453536 | None:intergenic | 45.0% | |
| ! | CAAGATTGCTGTGTGGACTA+CGG | - | chr1_4:28453534-28453553 | Msa0158760:intron | 45.0% |
| !!! | CGTGTGTTTTGTTTTGCAGG+TGG | - | chr1_4:28453646-28453665 | Msa0158760:intron | 45.0% |
| TCCAGTAGCATTGTCACTAG+AGG | - | chr1_4:28453920-28453939 | Msa0158760:intron | 45.0% | |
| TCCTCTAGTGACAATGCTAC+TGG | + | chr1_4:28453924-28453943 | None:intergenic | 45.0% | |
| ! | TAGTGCTGTTCTGATGCAGA+TGG | + | chr1_4:28453985-28454004 | None:intergenic | 45.0% |
| GTGGTTTCTACACTGCTTGT+TGG | - | chr1_4:28454005-28454024 | Msa0158760:intron | 45.0% | |
| TGTTTCCTAAGCATCAAGGG+AGG | - | chr1_4:28454385-28454404 | Msa0158760:intron | 45.0% | |
| CAATCCAAACGACTTGCATC+TGG | - | chr1_4:28454499-28454518 | Msa0158760:intron | 45.0% | |
| !! | GGTCTTGTATCATGCGGTTT+TGG | - | chr1_4:28454769-28454788 | Msa0158760:CDS | 45.0% |
| TGGATCATACTCAGCCATCT+CGG | - | chr1_4:28454789-28454808 | Msa0158760:CDS | 45.0% | |
| TTCTGCAATCATCTCCGAGA+TGG | + | chr1_4:28454806-28454825 | None:intergenic | 45.0% | |
| !! | GAAGAGAAGGTGTTGGGAAG+AGG | - | chr1_4:28449339-28449358 | Msa0158760:CDS | 50.0% |
| GAGACCCAGTTCTTACAGCA+TGG | - | chr1_4:28449422-28449441 | Msa0158760:intron | 50.0% | |
| CCATGCCATGCTGTAAGAAC+TGG | + | chr1_4:28449430-28449449 | None:intergenic | 50.0% | |
| CCAGTTCTTACAGCATGGCA+TGG | - | chr1_4:28449427-28449446 | Msa0158760:intron | 50.0% | |
| TGGCATGGCCTCAAAGTTAC+AGG | - | chr1_4:28449442-28449461 | Msa0158760:intron | 50.0% | |
| ! | CGGTACGTTATTTGGGTTCG+CGG | + | chr1_4:28450395-28450414 | None:intergenic | 50.0% |
| ! | TCGAAGGGGGTATACAGAGT+CGG | + | chr1_4:28450415-28450434 | None:intergenic | 50.0% |
| ACCGAAGCGAACTACGAACT+TGG | - | chr1_4:28450484-28450503 | Msa0158760:intron | 50.0% | |
| !! | GGTAGCAGAGGCTTTTTCTC+TGG | + | chr1_4:28450863-28450882 | None:intergenic | 50.0% |
| TCAAGGGCTATTATGCGGAG+TGG | + | chr1_4:28451586-28451605 | None:intergenic | 50.0% | |
| CAACAGCAAGCCAGTGTAGA+AGG | + | chr1_4:28452143-28452162 | None:intergenic | 50.0% | |
| AGCTTGGCCAATGTCAGGAT+AGG | + | chr1_4:28452200-28452219 | None:intergenic | 50.0% | |
| AAAGCAGCTTGGCCAATGTC+AGG | + | chr1_4:28452205-28452224 | None:intergenic | 50.0% | |
| ! | GACATTGGCCAAGCTGCTTT+CGG | - | chr1_4:28452205-28452224 | Msa0158760:intron | 50.0% |
| ! | TTCTTCCCACTGTTTGGCTC+CGG | - | chr1_4:28452716-28452735 | Msa0158760:intron | 50.0% |
| AGCTTGCGGAGTGATTGCAA+CGG | - | chr1_4:28452894-28452913 | Msa0158760:intron | 50.0% | |
| !! | GTACTGTGCTTGTTGTGGGT+TGG | - | chr1_4:28452925-28452944 | Msa0158760:intron | 50.0% |
| CCATAGAGACCAACAGCAAC+AGG | + | chr1_4:28453012-28453031 | None:intergenic | 50.0% | |
| ! | CCTGTTGCTGTTGGTCTCTA+TGG | - | chr1_4:28453009-28453028 | Msa0158760:intron | 50.0% |
| CTCTATGGTTACTGCTTCGC+TGG | - | chr1_4:28453024-28453043 | Msa0158760:intron | 50.0% | |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | + | chr1_4:28453207-28453226 | None:intergenic | 50.0% |
| GCACAGACACTCCTCAGATT+AGG | - | chr1_4:28453212-28453231 | Msa0158760:CDS | 50.0% | |
| GGCTATCTCCTATCCGATGT+GGG | + | chr1_4:28453268-28453287 | None:intergenic | 50.0% | |
| AGGCTATCTCCTATCCGATG+TGG | + | chr1_4:28453269-28453288 | None:intergenic | 50.0% | |
| CAAAACTGGCGTGTGAAGTG+AGG | + | chr1_4:28453319-28453338 | None:intergenic | 50.0% | |
| ! | CACTTCACACGCCAGTTTTG+TGG | - | chr1_4:28453319-28453338 | Msa0158760:CDS | 50.0% |
| TAGCCTCCAAGATTGCTGTG+TGG | - | chr1_4:28453527-28453546 | Msa0158760:intron | 50.0% | |
| AGTCCACACAGCAATCTTGG+AGG | + | chr1_4:28453533-28453552 | None:intergenic | 50.0% | |
| CGTAGTCCACACAGCAATCT+TGG | + | chr1_4:28453536-28453555 | None:intergenic | 50.0% | |
| CTGCATCAGAACAGCACTAG+TGG | - | chr1_4:28453986-28454005 | Msa0158760:intron | 50.0% | |
| TTCTGCCTCCCTTGATGCTT+AGG | + | chr1_4:28454393-28454412 | None:intergenic | 50.0% | |
| ! | TGGGATGGTTGGTTGGTGTG+AGG | + | chr1_4:28449999-28450018 | None:intergenic | 55.0% |
| TTCGGTACGTGGTACGGGTT+CGG | + | chr1_4:28450470-28450489 | None:intergenic | 55.0% | |
| TTCGCTTCGGTACGTGGTAC+GGG | + | chr1_4:28450475-28450494 | None:intergenic | 55.0% | |
| GTTCGCTTCGGTACGTGGTA+CGG | + | chr1_4:28450476-28450495 | None:intergenic | 55.0% | |
| TCGTAGTTCGCTTCGGTACG+TGG | + | chr1_4:28450481-28450500 | None:intergenic | 55.0% | |
| AGCGTGCCATCGCCGAATAT+AGG | - | chr1_4:28450749-28450768 | Msa0158760:intron | 55.0% | |
| AAAGCCTCTGCTACCACCGT+CGG | - | chr1_4:28450868-28450887 | Msa0158760:intron | 55.0% | |
| TGCTTCCTCCCCTACCATCT+AGG | - | chr1_4:28450924-28450943 | Msa0158760:intron | 55.0% | |
| GACTTCCTAGATGGTAGGGG+AGG | + | chr1_4:28450932-28450951 | None:intergenic | 55.0% | |
| ! | TCTTCCCACTGTTTGGCTCC+GGG | - | chr1_4:28452717-28452736 | Msa0158760:intron | 55.0% |
| !! | GTGCTTGTTGTGGGTTGGAG+TGG | - | chr1_4:28452930-28452949 | Msa0158760:intron | 55.0% |
| !! | TCCTCAGATTAGGGGTGTCC+CGG | - | chr1_4:28453222-28453241 | Msa0158760:CDS | 55.0% |
| !! | GATTAGGGGTGTCCCGGTAT+CGG | - | chr1_4:28453228-28453247 | Msa0158760:CDS | 55.0% |
| AGGCAGAATCAAGCGCTCTC+AGG | - | chr1_4:28454405-28454424 | Msa0158760:intron | 55.0% | |
| TCGGTACGTGGTACGGGTTC+GGG | + | chr1_4:28450469-28450488 | None:intergenic | 60.0% | |
| AGGTCCCGGAGCCAAACAGT+GGG | + | chr1_4:28452724-28452743 | None:intergenic | 60.0% | |
| AAGGTCCCGGAGCCAAACAG+TGG | + | chr1_4:28452725-28452744 | None:intergenic | 60.0% | |
| ACCGGGACACCCCTAATCTG+AGG | + | chr1_4:28453226-28453245 | None:intergenic | 60.0% | |
| GTGGTACGGGTTCGGGTACG+CGG | + | chr1_4:28450462-28450481 | None:intergenic | 65.0% | |
| TCGACCGACGGTGGTAGCAG+AGG | + | chr1_4:28450875-28450894 | None:intergenic | 65.0% | |
| CGATGCTGCTCGTCGACCGA+CGG | + | chr1_4:28450887-28450906 | None:intergenic | 65.0% | |
| TGCTGCTCGTCGACCGACGG+TGG | + | chr1_4:28450884-28450903 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 28448965 | 28455201 | 28448965 | ID=Msa0158760;Name=Msa0158760 |
| chr1_4 | mRNA | 28448965 | 28455201 | 28448965 | ID=Msa0158760-mRNA-1;Parent=Msa0158760;Name=Msa0158760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=176|0.83|0.84|1|0.66|0.76|13|364|505 |
| chr1_4 | exon | 28448965 | 28449427 | 28448965 | ID=Msa0158760-mRNA-1:exon:9190;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28449740 | 28449802 | 28449740 | ID=Msa0158760-mRNA-1:exon:9189;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28449899 | 28449942 | 28449899 | ID=Msa0158760-mRNA-1:exon:9188;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28450119 | 28450270 | 28450119 | ID=Msa0158760-mRNA-1:exon:9187;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28450469 | 28450501 | 28450469 | ID=Msa0158760-mRNA-1:exon:9186;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28451048 | 28451270 | 28451048 | ID=Msa0158760-mRNA-1:exon:9185;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28451400 | 28451580 | 28451400 | ID=Msa0158760-mRNA-1:exon:9184;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28451789 | 28451812 | 28451789 | ID=Msa0158760-mRNA-1:exon:9183;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28451914 | 28452128 | 28451914 | ID=Msa0158760-mRNA-1:exon:9182;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28453132 | 28453439 | 28453132 | ID=Msa0158760-mRNA-1:exon:9181;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28454703 | 28454898 | 28454703 | ID=Msa0158760-mRNA-1:exon:9180;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28455026 | 28455068 | 28455026 | ID=Msa0158760-mRNA-1:exon:9179;Parent=Msa0158760-mRNA-1 |
| chr1_4 | exon | 28455089 | 28455201 | 28455089 | ID=Msa0158760-mRNA-1:exon:9178;Parent=Msa0158760-mRNA-1 |
| chr1_4 | five_prime_UTR | 28455089 | 28455201 | 28455089 | ID=Msa0158760-mRNA-1:five_prime_utr;Parent=Msa0158760-mRNA-1 |
| chr1_4 | five_prime_UTR | 28455026 | 28455068 | 28455026 | ID=Msa0158760-mRNA-1:five_prime_utr;Parent=Msa0158760-mRNA-1 |
| chr1_4 | five_prime_UTR | 28454879 | 28454898 | 28454879 | ID=Msa0158760-mRNA-1:five_prime_utr;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28454703 | 28454878 | 28454703 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28453132 | 28453439 | 28453132 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28451914 | 28452128 | 28451914 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28451789 | 28451812 | 28451789 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28451400 | 28451580 | 28451400 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28451048 | 28451270 | 28451048 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28450469 | 28450501 | 28450469 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28450119 | 28450270 | 28450119 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28449899 | 28449942 | 28449899 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28449740 | 28449802 | 28449740 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | CDS | 28449329 | 28449427 | 28449329 | ID=Msa0158760-mRNA-1:cds;Parent=Msa0158760-mRNA-1 |
| chr1_4 | three_prime_UTR | 28448965 | 28449328 | 28448965 | ID=Msa0158760-mRNA-1:three_prime_utr;Parent=Msa0158760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
