AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124210 MtrunA17_Chr7g0264651 100.000 390 0 0 1 390 1 390 0.0 808
Msa1124210 MtrunA17_Chr1g0180491 94.103 390 23 0 1 390 1 390 0.0 740
Msa1124210 MtrunA17_Chr2g0302931 90.674 386 36 0 2 387 4 389 0.0 704
Msa1124210 MtrunA17_Chr7g0270531 88.860 386 43 0 2 387 3 388 0.0 704
Msa1124210 MtrunA17_Chr4g0069201 90.155 386 38 0 2 387 4 389 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124210 AT2G36880.2 93.077 390 27 0 1 390 1 390 0.0 731
Msa1124210 AT2G36880.1 93.077 390 27 0 1 390 1 390 0.0 731
Msa1124210 AT3G17390.1 90.698 387 36 0 1 387 1 387 0.0 708
Msa1124210 AT1G02500.1 89.922 387 39 0 1 387 1 387 0.0 700
Msa1124210 AT1G02500.2 89.922 387 39 0 1 387 1 387 0.0 700
Msa1124210 AT4G01850.2 88.889 387 43 0 1 387 1 387 0.0 700
Msa1124210 AT4G01850.1 88.889 387 43 0 1 387 1 387 0.0 700

Find 154 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGCATATGGCCATTT+TGG 0.193128 7_3:-75355640 Msa1124210:CDS
CCATCTGGTCGGTTTGTTAT+TGG 0.197743 7_3:-75356033 Msa1124210:CDS
TCACATGCAACCTTACTTTC+TGG 0.212828 7_3:+75356627 None:intergenic
TGCAACCAAACTTGTGTTAT+TGG 0.238406 7_3:-75355233 Msa1124210:three_prime_UTR
CGTAGCCATCTTTCAGATTT+GGG 0.287343 7_3:-75355516 Msa1124210:three_prime_UTR
GTTGGGCACGTTAGCTCAAT+AGG 0.290555 7_3:-75355360 Msa1124210:three_prime_UTR
TATATATAGATAAACGTATA+TGG 0.290661 7_3:+75357853 None:intergenic
CGAGACACTTGCAGAGGAAT+TGG 0.296576 7_3:-75356525 Msa1124210:CDS
AAATTTCATTATTAAGTTAT+GGG 0.298197 7_3:-75355287 Msa1124210:three_prime_UTR
TCGTAGCCATCTTTCAGATT+TGG 0.299132 7_3:-75355517 Msa1124210:three_prime_UTR
ACTAACATGGTTATGGTCTT+TGG 0.303812 7_3:-75356591 Msa1124210:CDS
CACATGCAACCTTACTTTCT+GGG 0.310592 7_3:+75356628 None:intergenic
TAAATTTCATTATTAAGTTA+TGG 0.318236 7_3:-75355288 Msa1124210:three_prime_UTR
GGCCATATGCAGCAGTCTTT+TGG 0.329152 7_3:+75355647 None:intergenic
ACCTGATCACACAGCTTGTC+GGG 0.335375 7_3:+75356687 None:intergenic
CATGGAGGAGGTGCCTTCTC+TGG 0.336553 7_3:-75355940 Msa1124210:CDS
CCCTGAAGCTACCACACTTT+TGG 0.336878 7_3:+75355864 None:intergenic
CCATGGCTCCGTTATCATTC+TGG 0.342771 7_3:+75356205 None:intergenic
GCCAAAAGTGTGGTAGCTTC+AGG 0.346842 7_3:-75355865 Msa1124210:CDS
AGATTATTGGAAATCATTCC+TGG 0.346876 7_3:+75355700 None:intergenic
TCAAAAGAGGTGGCAACTTC+AGG 0.361522 7_3:-75355672 Msa1124210:CDS
CAGGATCATCCCGTCCAAAA+TGG 0.362727 7_3:+75355626 None:intergenic
TTTCATAAATTAACTCCAAT+GGG 0.365018 7_3:+75355171 None:intergenic
AGCTTGCTAACTCAAGCCTT+TGG 0.368398 7_3:+75355571 None:intergenic
TTACACCAATAACACAAGTT+TGG 0.369185 7_3:+75355228 None:intergenic
TCTTGTTGAAGATACACTTC+GGG 0.374573 7_3:-75355454 Msa1124210:three_prime_UTR
CTCACTCCAACCACCACATT+TGG 0.374644 7_3:-75357742 Msa1124210:intron
CCACTTCTATCGACCTTGGT+TGG 0.382632 7_3:+75355910 None:intergenic
GGCTGGGGTGCTCATGGAGG+AGG 0.385528 7_3:-75355952 Msa1124210:CDS
CTCATAGTTCACAGTAGCCT+TGG 0.390492 7_3:+75356557 None:intergenic
TGAAGATACACTTCGGGGAT+TGG 0.392450 7_3:-75355448 Msa1124210:three_prime_UTR
TTTGGTTGCAAAACTATCAA+TGG 0.398474 7_3:+75355246 None:intergenic
TTTGGGTGAAATGAAAATAA+AGG 0.406417 7_3:-75355499 Msa1124210:three_prime_UTR
TGAACTCCTTGAGCGATATC+AGG 0.407674 7_3:+75356432 None:intergenic
CACTTCTATCGACCTTGGTT+GGG 0.408524 7_3:+75355911 None:intergenic
TATGGTGGCTGGGGTGCTCA+TGG 0.408565 7_3:-75355958 Msa1124210:CDS
AGAGATGATGATGTCTTAGT+TGG 0.411690 7_3:-75355378 Msa1124210:three_prime_UTR
GTGCAGGTTTCTTATGCAAT+TGG 0.414240 7_3:-75355823 Msa1124210:CDS
AATTCCAGACAAGGACATCT+TGG 0.414364 7_3:-75355752 Msa1124210:CDS
TTTGTTGACACGTACAAAAC+AGG 0.414682 7_3:-75355778 Msa1124210:CDS
ACAGTCTCCCAGGTGAAATC+AGG 0.423808 7_3:+75355607 None:intergenic
TTGGGCACGTTAGCTCAATA+GGG 0.426301 7_3:-75355359 Msa1124210:three_prime_UTR
TAACAGAAAATGTGAGAAAG+AGG 0.431513 7_3:+75357804 None:intergenic
TACAAAGACTAACATGGTTA+TGG 0.436292 7_3:-75356598 Msa1124210:CDS
TGCAAGACGTTGCATTGTGC+AGG 0.438573 7_3:-75355839 Msa1124210:CDS
CCCCGACAAGCTGTGTGATC+AGG 0.440463 7_3:-75356688 Msa1124210:CDS
GATATCGCTCAAGGAGTTCA+TGG 0.445977 7_3:-75356429 Msa1124210:CDS
GCAGCAAGACCCAGAAAGTA+AGG 0.446581 7_3:-75356637 Msa1124210:CDS
CTTCAACAAGAGATGTATAT+AGG 0.447435 7_3:+75355466 None:intergenic
ACAAAACATGCGCATGGCTT+AGG 0.449886 7_3:-75356260 Msa1124210:CDS
AGAACCAAGATGTCCTTGTC+TGG 0.450791 7_3:+75355748 None:intergenic
TGGGTAAGTGGCATTAGCTC+AGG 0.454166 7_3:+75356330 None:intergenic
TCTGGTACTCAACAGTAACT+TGG 0.454448 7_3:+75356223 None:intergenic
TCTGGTCGGTTTGTTATTGG+TGG 0.458272 7_3:-75356030 Msa1124210:CDS
GAAGTGGGGCATATATTGTT+AGG 0.460316 7_3:-75355894 Msa1124210:CDS
GAGTATCTTGACAGTCTCCC+AGG 0.461385 7_3:+75355597 None:intergenic
TACCAAAAGACTGCTGCATA+TGG 0.464990 7_3:-75355649 Msa1124210:CDS
ACAAATACAGAAAGTGGCTC+TGG 0.466173 7_3:+75355796 None:intergenic
TTTGTTATTGGTGGACCTCA+TGG 0.466434 7_3:-75356021 Msa1124210:CDS
AGGACAGTGTGCACACGGAT+TGG 0.468164 7_3:+75356180 None:intergenic
TCACCAGCACCAATTTCCTC+TGG 0.468785 7_3:+75356390 None:intergenic
AACCTGATCACACAGCTTGT+CGG 0.469901 7_3:+75356686 None:intergenic
GATATTTATTATTTCCCCAT+TGG 0.470244 7_3:-75355186 Msa1124210:three_prime_UTR
ATATATAGATAAACGTATAT+GGG 0.470628 7_3:+75357854 None:intergenic
ATCTTCCATCTCAATCCATC+TGG 0.470979 7_3:-75356048 Msa1124210:CDS
TTTCACCCAAATCTGAAAGA+TGG 0.473068 7_3:+75355511 None:intergenic
GGACAGTGTGCACACGGATT+GGG 0.473091 7_3:+75356181 None:intergenic
AGAAAATGTGAGAAAGAGGA+AGG 0.474488 7_3:+75357808 None:intergenic
ATTTCATAAATTAACTCCAA+TGG 0.475723 7_3:+75355170 None:intergenic
CCAAAAGTGTGGTAGCTTCA+GGG 0.478895 7_3:-75355864 Msa1124210:CDS
TACACTTCGGGGATTGGATG+TGG 0.480085 7_3:-75355442 Msa1124210:three_prime_UTR
TTATTGACACCTATGGTGGC+TGG 0.480591 7_3:-75355969 Msa1124210:CDS
GGTGACCAAGGTCACATGTT+TGG 0.484772 7_3:-75356372 Msa1124210:CDS
CATGGCATTTCTAGTGGTGG+TGG 0.488805 7_3:-75355546 Msa1124210:three_prime_UTR
ATAATGAAATTTAAAAGAAG+TGG 0.489758 7_3:+75355298 None:intergenic
GGTTGGGTCCTTGCCAGAGA+AGG 0.492679 7_3:+75355927 None:intergenic
TATTGACACCTATGGTGGCT+GGG 0.497719 7_3:-75355968 Msa1124210:CDS
AAAGAGGAAGGGAAATAGAA+AGG 0.500304 7_3:+75357820 None:intergenic
TAGCTCAGGGGTTTCATCTG+TGG 0.506485 7_3:+75356344 None:intergenic
AAAACTATCAATGGAGTGAC+AGG 0.509788 7_3:+75355255 None:intergenic
CTGGTACTCAACAGTAACTT+GGG 0.520651 7_3:+75356224 None:intergenic
GGAAGATAGTCTTGTCATCA+AGG 0.520901 7_3:+75356064 None:intergenic
GTGTCAACAAATACAGAAAG+TGG 0.521583 7_3:+75355790 None:intergenic
CTCTTGTTGAAGATACACTT+CGG 0.522973 7_3:-75355455 Msa1124210:three_prime_UTR
GGTGGACCTCATGGAGATGC+AGG 0.523297 7_3:-75356012 Msa1124210:CDS
AAGATCATTATTGACACCTA+TGG 0.523504 7_3:-75355976 Msa1124210:CDS
CATGGAGATGCAGGACTCAC+TGG 0.526918 7_3:-75356003 Msa1124210:CDS
CGAGTTTAGTAGCAAGCACA+TGG 0.527337 7_3:+75356310 None:intergenic
TACGTACCAAATGTGGTGGT+TGG 0.532027 7_3:+75357736 None:intergenic
AATAATCTTGACCTCAAAAG+AGG 0.536379 7_3:-75355685 Msa1124210:CDS
GAGATGATGATGTCTTAGTT+GGG 0.537847 7_3:-75355377 Msa1124210:three_prime_UTR
GAAGGGAAATAGAAAGGTAG+CGG 0.541569 7_3:+75357826 None:intergenic
CATGTGCTTGCTACTAAACT+CGG 0.541932 7_3:-75356309 Msa1124210:CDS
AAAGCAAATAACTGAAGAGC+GGG 0.545756 7_3:-75357905 Msa1124210:five_prime_UTR
TGCCCCACTTCTATCGACCT+TGG 0.546010 7_3:+75355906 None:intergenic
AAACCAGAGGAAATTGGTGC+TGG 0.551112 7_3:-75356393 Msa1124210:CDS
GGGATGATCCTGATTTCACC+TGG 0.551255 7_3:-75355615 Msa1124210:CDS
TGCGCATGGCTTAGGCCTGA+TGG 0.560731 7_3:-75356252 Msa1124210:CDS
GGGTAAGTGGCATTAGCTCA+GGG 0.563406 7_3:+75356331 None:intergenic
GGTGGCTGGGGTGCTCATGG+AGG 0.565014 7_3:-75355955 Msa1124210:CDS
GTAGCAAGCACATGGGTAAG+TGG 0.569064 7_3:+75356318 None:intergenic
GAAATTGGTGCTGGTGACCA+AGG 0.570337 7_3:-75356384 Msa1124210:CDS
GAAAATGTGAGAAAGAGGAA+GGG 0.574942 7_3:+75357809 None:intergenic
GTTGAGTACCAGAATGATAA+CGG 0.575092 7_3:-75356213 Msa1124210:CDS
ATGAGCACCCCAGCCACCAT+AGG 0.576048 7_3:+75355960 None:intergenic
CAAATACAGAAAGTGGCTCT+GGG 0.576109 7_3:+75355797 None:intergenic
TCCATCTCAATCCATCTGGT+CGG 0.577302 7_3:-75356044 Msa1124210:CDS
CTGCAAACATGCATCAAGGA+TGG 0.580545 7_3:+75356656 None:intergenic
GTGCACACGGATTGGGACCA+TGG 0.581365 7_3:+75356188 None:intergenic
TACCATGGCATTTCTAGTGG+TGG 0.581465 7_3:-75355549 Msa1124210:three_prime_UTR
CATAGCCAAACATGTGACCT+TGG 0.582504 7_3:+75356367 None:intergenic
ATTGACACCTATGGTGGCTG+GGG 0.585915 7_3:-75355967 Msa1124210:CDS
TGACAGATTCTGAGGTGAAG+AGG 0.586047 7_3:+75356721 None:intergenic
CAACCAAGGTCGATAGAAGT+GGG 0.589471 7_3:-75355909 Msa1124210:CDS
CTTGAGTTAGCAAGCTACCA+TGG 0.593941 7_3:-75355564 Msa1124210:exon
AGGAGGTGCCTTCTCTGGCA+AGG 0.599631 7_3:-75355935 Msa1124210:CDS
TTCGGGGATTGGATGTGGAA+AGG 0.600351 7_3:-75355437 Msa1124210:three_prime_UTR
CCAACCAAGGTCGATAGAAG+TGG 0.601493 7_3:-75355910 Msa1124210:CDS
ACCTTCGTTGACAGATTCTG+AGG 0.606247 7_3:+75356713 None:intergenic
AGCTACCATGGCATTTCTAG+TGG 0.607369 7_3:-75355552 Msa1124210:three_prime_UTR
ATCATTATTGACACCTATGG+TGG 0.611359 7_3:-75355973 Msa1124210:CDS
CTTGCTGCAAACATGCATCA+AGG 0.611540 7_3:+75356652 None:intergenic
CCAATAACAAACCGACCAGA+TGG 0.611757 7_3:+75356033 None:intergenic
AGATGAGGACAGTGTGCACA+CGG 0.613951 7_3:+75356175 None:intergenic
CATCGTGCTGAGTTGAGATG+AGG 0.617276 7_3:+75356160 None:intergenic
GGAGAGTTACGTACCAAATG+TGG 0.617785 7_3:+75357729 None:intergenic
ACCGACCAGATGGATTGAGA+TGG 0.617816 7_3:+75356043 None:intergenic
CCAGAATGATAACGGAGCCA+TGG 0.619445 7_3:-75356205 Msa1124210:CDS
GGATTCGTATCAGCTGATGT+TGG 0.619951 7_3:-75356504 Msa1124210:CDS
CAGAGTCCTGATATCGCTCA+AGG 0.622943 7_3:-75356438 Msa1124210:CDS
GAAAGAACAAAACATGCGCA+TGG 0.625968 7_3:-75356266 Msa1124210:CDS
AAGGGAAATAGAAAGGTAGC+GGG 0.626362 7_3:+75357827 None:intergenic
CACCACCACTAGAAATGCCA+TGG 0.628681 7_3:+75355547 None:intergenic
CTTGTTGAAGATACACTTCG+GGG 0.632474 7_3:-75355453 Msa1124210:three_prime_UTR
AATCTTGACCTCAAAAGAGG+TGG 0.633225 7_3:-75355682 Msa1124210:CDS
CTCTGGCAAGGACCCAACCA+AGG 0.634793 7_3:-75355923 Msa1124210:CDS
GAGATGCAGGACTCACTGGT+AGG 0.648576 7_3:-75355999 Msa1124210:CDS
ACCTCAGAATCTGTCAACGA+AGG 0.652365 7_3:-75356714 Msa1124210:CDS
ATGTGGTGGTTGGAGTGAGA+AGG 0.652893 7_3:+75357746 None:intergenic
TGGGCACGTTAGCTCAATAG+GGG 0.656176 7_3:-75355358 Msa1124210:three_prime_UTR
GAAAGCAAATAACTGAAGAG+CGG 0.656250 7_3:-75357906 Msa1124210:five_prime_UTR
GGTAAGTGGCATTAGCTCAG+GGG 0.658545 7_3:+75356332 None:intergenic
TTCATAAATTAACTCCAATG+GGG 0.666291 7_3:+75355172 None:intergenic
CCTGATCACACAGCTTGTCG+GGG 0.668924 7_3:+75356688 None:intergenic
GGATGATCCTGATTTCACCT+GGG 0.669087 7_3:-75355614 Msa1124210:CDS
GAGTTACGTACCAAATGTGG+TGG 0.675516 7_3:+75357732 None:intergenic
TGTCAAGATACTCAAGCCAA+AGG 0.679722 7_3:-75355587 Msa1124210:CDS
ATAGTTCGAGACACTTGCAG+AGG 0.698300 7_3:-75356531 Msa1124210:CDS
AACCAAGGTCGATAGAAGTG+GGG 0.698373 7_3:-75355908 Msa1124210:CDS
CTTTGGTGAGATAACAACCA+AGG 0.702167 7_3:-75356574 Msa1124210:CDS
TAGGCAAGCAGCCAAAAGTG+TGG 0.702229 7_3:-75355875 Msa1124210:CDS
GTGAGTCCTGCATCTCCATG+AGG 0.711004 7_3:+75356006 None:intergenic
GAGTTTAGTAGCAAGCACAT+GGG 0.722855 7_3:+75356311 None:intergenic
GACATGTACAAAGACTAACA+TGG 0.784188 7_3:-75356604 Msa1124210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTCATTATTAAGTTA+TGG - chr7_3:75357785-75357804 Msa1124210:five_prime_UTR 10.0%
!! AAATTTCATTATTAAGTTAT+GGG - chr7_3:75357786-75357805 Msa1124210:five_prime_UTR 10.0%
!! ATATATAGATAAACGTATAT+GGG + chr7_3:75355222-75355241 None:intergenic 15.0%
!! TATATATAGATAAACGTATA+TGG + chr7_3:75355223-75355242 None:intergenic 15.0%
!! GATGCAAAAAAAAATAAAAA+TGG + chr7_3:75355421-75355440 None:intergenic 15.0%
!!! ATTATGGTTTTAGATTTATT+TGG - chr7_3:75355705-75355724 Msa1124210:CDS 15.0%
!!! AATTATGCAAAAACTAATTT+TGG + chr7_3:75355739-75355758 None:intergenic 15.0%
!! ATAATGAAATTTAAAAGAAG+TGG + chr7_3:75357778-75357797 None:intergenic 15.0%
!! TAATAGAAACATTAGCATTA+TGG - chr7_3:75355689-75355708 Msa1124210:CDS 20.0%
!!! TAATTGATAATTGATCGTTA+AGG - chr7_3:75355754-75355773 Msa1124210:CDS 20.0%
!! GTTTCAATTATCATTCATAT+TGG + chr7_3:75355827-75355846 None:intergenic 20.0%
!! ATGAATGATAATTGAAACAT+TGG - chr7_3:75355829-75355848 Msa1124210:CDS 20.0%
!! GTTATAATGATAAGGAAAAA+AGG + chr7_3:75356068-75356087 None:intergenic 20.0%
!! GGTAAAATAAAAAACAAACA+AGG + chr7_3:75357757-75357776 None:intergenic 20.0%
!! TTTCATAAATTAACTCCAAT+GGG + chr7_3:75357905-75357924 None:intergenic 20.0%
!! ATTTCATAAATTAACTCCAA+TGG + chr7_3:75357906-75357925 None:intergenic 20.0%
! ATAACTAGAAAAGGTAAAAG+AGG + chr7_3:75355368-75355387 None:intergenic 25.0%
! AAAAATGGCATTATAGACTT+GGG + chr7_3:75355406-75355425 None:intergenic 25.0%
! TAAAAATGGCATTATAGACT+TGG + chr7_3:75355407-75355426 None:intergenic 25.0%
! TTCATAAAGTAGATAACATG+AGG + chr7_3:75355460-75355479 None:intergenic 25.0%
!!! GATTCTTTTGTTGTATTGTT+CGG - chr7_3:75355625-75355644 Msa1124210:CDS 25.0%
!! AAAAATGTTTCTGTGACTAT+TGG + chr7_3:75355790-75355809 None:intergenic 25.0%
! ACGCAAAAGTTATAATGATA+AGG + chr7_3:75356076-75356095 None:intergenic 25.0%
! TAAAAGAAGGAAGAAAAACA+AGG + chr7_3:75356313-75356332 None:intergenic 25.0%
! TTTGGGTGAAATGAAAATAA+AGG - chr7_3:75357574-75357593 Msa1124210:intron 25.0%
! GATATTTATTATTTCCCCAT+TGG - chr7_3:75357887-75357906 Msa1124210:five_prime_UTR 25.0%
! TTCATAAATTAACTCCAATG+GGG + chr7_3:75357904-75357923 None:intergenic 25.0%
TAACAGAAAATGTGAGAAAG+AGG + chr7_3:75355272-75355291 None:intergenic 30.0%
GATCTGATGATAACTAGAAA+AGG + chr7_3:75355377-75355396 None:intergenic 30.0%
! TTCTAGTTATCATCAGATCT+TGG - chr7_3:75355378-75355397 Msa1124210:three_prime_UTR 30.0%
GATAATTGATCGTTAAGGTA+TGG - chr7_3:75355759-75355778 Msa1124210:CDS 30.0%
TAATTGAAACATTGGCAATG+TGG - chr7_3:75355837-75355856 Msa1124210:CDS 30.0%
! TAGAAGTAGCTTTTGCTTAT+AGG - chr7_3:75355885-75355904 Msa1124210:CDS 30.0%
! GTCAATTGTCAAACTCTTTT+TGG - chr7_3:75355974-75355993 Msa1124210:CDS 30.0%
! TTTTTCCTTGAATGTAGATC+TGG + chr7_3:75356003-75356022 None:intergenic 30.0%
! ATAAGGAAAAAAGGTGTATG+TGG + chr7_3:75356059-75356078 None:intergenic 30.0%
! GCATTTTATGTACTTTTGAG+AGG - chr7_3:75356134-75356153 Msa1124210:CDS 30.0%
CTCATATCAATACGTTAGAA+AGG + chr7_3:75356169-75356188 None:intergenic 30.0%
TACAAAGACTAACATGGTTA+TGG - chr7_3:75356475-75356494 Msa1124210:CDS 30.0%
AAGATCATTATTGACACCTA+TGG - chr7_3:75357097-75357116 Msa1124210:intron 30.0%
!!! TTAAAGAGCATTTTGACTTC+AGG - chr7_3:75357350-75357369 Msa1124210:intron 30.0%
AGATTATTGGAAATCATTCC+TGG + chr7_3:75357376-75357395 None:intergenic 30.0%
!!! TCTTTTGAGGTCAAGATTAT+TGG + chr7_3:75357389-75357408 None:intergenic 30.0%
AATAATCTTGACCTCAAAAG+AGG - chr7_3:75357388-75357407 Msa1124210:intron 30.0%
CTTCAACAAGAGATGTATAT+AGG + chr7_3:75357610-75357629 None:intergenic 30.0%
TTTGGTTGCAAAACTATCAA+TGG + chr7_3:75357830-75357849 None:intergenic 30.0%
TTACACCAATAACACAAGTT+TGG + chr7_3:75357848-75357867 None:intergenic 30.0%
GAAAGCAAATAACTGAAGAG+CGG - chr7_3:75355167-75355186 Msa1124210:three_prime_UTR 35.0%
AAAGCAAATAACTGAAGAGC+GGG - chr7_3:75355168-75355187 Msa1124210:three_prime_UTR 35.0%
AAAGAGGAAGGGAAATAGAA+AGG + chr7_3:75355256-75355275 None:intergenic 35.0%
GAAAATGTGAGAAAGAGGAA+GGG + chr7_3:75355267-75355286 None:intergenic 35.0%
AGAAAATGTGAGAAAGAGGA+AGG + chr7_3:75355268-75355287 None:intergenic 35.0%
ATCATTCATATTGGCAGATC+TGG + chr7_3:75355818-75355837 None:intergenic 35.0%
! AAAGCTACTTCTAGTTGCTT+TGG + chr7_3:75355878-75355897 None:intergenic 35.0%
TAAGGAGCGACATTGTTATA+CGG + chr7_3:75356027-75356046 None:intergenic 35.0%
!! TGTATGTGGAGTTGATGATA+AGG + chr7_3:75356045-75356064 None:intergenic 35.0%
CAATACGTTAGAAAGGAGTT+TGG + chr7_3:75356162-75356181 None:intergenic 35.0%
!!! TCCTTCTTTTAAGACAGAGA+TGG - chr7_3:75356322-75356341 Msa1124210:CDS 35.0%
TCCATCTCTGTCTTAAAAGA+AGG + chr7_3:75356326-75356345 None:intergenic 35.0%
GACATGTACAAAGACTAACA+TGG - chr7_3:75356469-75356488 Msa1124210:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr7_3:75356482-75356501 Msa1124210:CDS 35.0%
ACCAAAAAACCAGAGGAAAT+TGG - chr7_3:75356674-75356693 Msa1124210:CDS 35.0%
!!! ACCAATTTCCTCTGGTTTTT+TGG + chr7_3:75356678-75356697 None:intergenic 35.0%
GTTGAGTACCAGAATGATAA+CGG - chr7_3:75356860-75356879 Msa1124210:intron 35.0%
!! TGTCATCAAGGTATTTTGCT+GGG + chr7_3:75357000-75357019 None:intergenic 35.0%
!! TTGTCATCAAGGTATTTTGC+TGG + chr7_3:75357001-75357020 None:intergenic 35.0%
ATCATTATTGACACCTATGG+TGG - chr7_3:75357100-75357119 Msa1124210:intron 35.0%
GTGTCAACAAATACAGAAAG+TGG + chr7_3:75357286-75357305 None:intergenic 35.0%
TTTGTTGACACGTACAAAAC+AGG - chr7_3:75357295-75357314 Msa1124210:intron 35.0%
AACAGGAAAAATTCCAGACA+AGG - chr7_3:75357312-75357331 Msa1124210:intron 35.0%
TTTCACCCAAATCTGAAAGA+TGG + chr7_3:75357565-75357584 None:intergenic 35.0%
CTCTTGTTGAAGATACACTT+CGG - chr7_3:75357618-75357637 Msa1124210:intron 35.0%
TCTTGTTGAAGATACACTTC+GGG - chr7_3:75357619-75357638 Msa1124210:intron 35.0%
! AGAGATGATGATGTCTTAGT+TGG - chr7_3:75357695-75357714 Msa1124210:intron 35.0%
! GAGATGATGATGTCTTAGTT+GGG - chr7_3:75357696-75357715 Msa1124210:intron 35.0%
AAAACTATCAATGGAGTGAC+AGG + chr7_3:75357821-75357840 None:intergenic 35.0%
TGCAACCAAACTTGTGTTAT+TGG - chr7_3:75357840-75357859 Msa1124210:five_prime_UTR 35.0%
AAGGGAAATAGAAAGGTAGC+GGG + chr7_3:75355249-75355268 None:intergenic 40.0%
GAAGGGAAATAGAAAGGTAG+CGG + chr7_3:75355250-75355269 None:intergenic 40.0%
CCACAGCTGAATGTTTATGA+TGG + chr7_3:75355950-75355969 None:intergenic 40.0%
CCATCATAAACATTCAGCTG+TGG - chr7_3:75355947-75355966 Msa1124210:CDS 40.0%
GGTTTCCAGATCTACATTCA+AGG - chr7_3:75355995-75356014 Msa1124210:CDS 40.0%
GAAGGAAGAAAAACAAGGCA+TGG + chr7_3:75356308-75356327 None:intergenic 40.0%
CACATGCAACCTTACTTTCT+GGG + chr7_3:75356448-75356467 None:intergenic 40.0%
TCACATGCAACCTTACTTTC+TGG + chr7_3:75356449-75356468 None:intergenic 40.0%
CTTTGGTGAGATAACAACCA+AGG - chr7_3:75356499-75356518 Msa1124210:CDS 40.0%
TCACTTGACCAAAAAACCAG+AGG - chr7_3:75356667-75356686 Msa1124210:CDS 40.0%
GAGTTTAGTAGCAAGCACAT+GGG + chr7_3:75356765-75356784 None:intergenic 40.0%
! CATGTGCTTGCTACTAAACT+CGG - chr7_3:75356764-75356783 Msa1124210:intron 40.0%
GAAAGAACAAAACATGCGCA+TGG - chr7_3:75356807-75356826 Msa1124210:intron 40.0%
! GTAACTTGGGTTTTACCATC+AGG + chr7_3:75356839-75356858 None:intergenic 40.0%
CTGGTACTCAACAGTAACTT+GGG + chr7_3:75356852-75356871 None:intergenic 40.0%
TCTGGTACTCAACAGTAACT+TGG + chr7_3:75356853-75356872 None:intergenic 40.0%
! AGGTATTTTGCTGGGATAAC+AGG + chr7_3:75356992-75357011 None:intergenic 40.0%
!! GGAAGATAGTCTTGTCATCA+AGG + chr7_3:75357012-75357031 None:intergenic 40.0%
ATCTTCCATCTCAATCCATC+TGG - chr7_3:75357025-75357044 Msa1124210:intron 40.0%
!! TTTGTTATTGGTGGACCTCA+TGG - chr7_3:75357052-75357071 Msa1124210:intron 40.0%
GAAGTGGGGCATATATTGTT+AGG - chr7_3:75357179-75357198 Msa1124210:intron 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr7_3:75357250-75357269 Msa1124210:intron 40.0%
CAAATACAGAAAGTGGCTCT+GGG + chr7_3:75357279-75357298 None:intergenic 40.0%
ACAAATACAGAAAGTGGCTC+TGG + chr7_3:75357280-75357299 None:intergenic 40.0%
AATTCCAGACAAGGACATCT+TGG - chr7_3:75357321-75357340 Msa1124210:intron 40.0%
AATCTTGACCTCAAAAGAGG+TGG - chr7_3:75357391-75357410 Msa1124210:intron 40.0%
TACCAAAAGACTGCTGCATA+TGG - chr7_3:75357424-75357443 Msa1124210:intron 40.0%
TGTCAAGATACTCAAGCCAA+AGG - chr7_3:75357486-75357505 Msa1124210:intron 40.0%
TCGTAGCCATCTTTCAGATT+TGG - chr7_3:75357556-75357575 Msa1124210:intron 40.0%
CGTAGCCATCTTTCAGATTT+GGG - chr7_3:75357557-75357576 Msa1124210:intron 40.0%
CTTGTTGAAGATACACTTCG+GGG - chr7_3:75357620-75357639 Msa1124210:intron 40.0%
TACGTACCAAATGTGGTGGT+TGG + chr7_3:75355340-75355359 None:intergenic 45.0%
GAGTTACGTACCAAATGTGG+TGG + chr7_3:75355344-75355363 None:intergenic 45.0%
GGAGAGTTACGTACCAAATG+TGG + chr7_3:75355347-75355366 None:intergenic 45.0%
!! TGACAGATTCTGAGGTGAAG+AGG + chr7_3:75356355-75356374 None:intergenic 45.0%
ACCTCAGAATCTGTCAACGA+AGG - chr7_3:75356359-75356378 Msa1124210:CDS 45.0%
ACCTTCGTTGACAGATTCTG+AGG + chr7_3:75356363-75356382 None:intergenic 45.0%
AACCTGATCACACAGCTTGT+CGG + chr7_3:75356390-75356409 None:intergenic 45.0%
CTGCAAACATGCATCAAGGA+TGG + chr7_3:75356420-75356439 None:intergenic 45.0%
CTTGCTGCAAACATGCATCA+AGG + chr7_3:75356424-75356443 None:intergenic 45.0%
CTCATAGTTCACAGTAGCCT+TGG + chr7_3:75356519-75356538 None:intergenic 45.0%
ATAGTTCGAGACACTTGCAG+AGG - chr7_3:75356542-75356561 Msa1124210:CDS 45.0%
GGATTCGTATCAGCTGATGT+TGG - chr7_3:75356569-75356588 Msa1124210:CDS 45.0%
TGAACTCCTTGAGCGATATC+AGG + chr7_3:75356644-75356663 None:intergenic 45.0%
GATATCGCTCAAGGAGTTCA+TGG - chr7_3:75356644-75356663 Msa1124210:CDS 45.0%
AAACCAGAGGAAATTGGTGC+TGG - chr7_3:75356680-75356699 Msa1124210:CDS 45.0%
CATAGCCAAACATGTGACCT+TGG + chr7_3:75356709-75356728 None:intergenic 45.0%
CGAGTTTAGTAGCAAGCACA+TGG + chr7_3:75356766-75356785 None:intergenic 45.0%
ACAAAACATGCGCATGGCTT+AGG - chr7_3:75356813-75356832 Msa1124210:intron 45.0%
TCCATCTCAATCCATCTGGT+CGG - chr7_3:75357029-75357048 Msa1124210:intron 45.0%
CCAATAACAAACCGACCAGA+TGG + chr7_3:75357043-75357062 None:intergenic 45.0%
!! CCATCTGGTCGGTTTGTTAT+TGG - chr7_3:75357040-75357059 Msa1124210:intron 45.0%
!! TCTGGTCGGTTTGTTATTGG+TGG - chr7_3:75357043-75357062 Msa1124210:intron 45.0%
TTATTGACACCTATGGTGGC+TGG - chr7_3:75357104-75357123 Msa1124210:intron 45.0%
TATTGACACCTATGGTGGCT+GGG - chr7_3:75357105-75357124 Msa1124210:intron 45.0%
CACTTCTATCGACCTTGGTT+GGG + chr7_3:75357165-75357184 None:intergenic 45.0%
CAACCAAGGTCGATAGAAGT+GGG - chr7_3:75357164-75357183 Msa1124210:intron 45.0%
AACCAAGGTCGATAGAAGTG+GGG - chr7_3:75357165-75357184 Msa1124210:intron 45.0%
! CCAAAAGTGTGGTAGCTTCA+GGG - chr7_3:75357209-75357228 Msa1124210:intron 45.0%
AGAACCAAGATGTCCTTGTC+TGG + chr7_3:75357328-75357347 None:intergenic 45.0%
! TGAAGTTGCCACCTCTTTTG+AGG + chr7_3:75357402-75357421 None:intergenic 45.0%
TCAAAAGAGGTGGCAACTTC+AGG - chr7_3:75357401-75357420 Msa1124210:intron 45.0%
! ACTGCTGCATATGGCCATTT+TGG - chr7_3:75357433-75357452 Msa1124210:intron 45.0%
!! CTGCATATGGCCATTTTGGA+CGG - chr7_3:75357437-75357456 Msa1124210:intron 45.0%
!! TGCATATGGCCATTTTGGAC+GGG - chr7_3:75357438-75357457 Msa1124210:intron 45.0%
GGATGATCCTGATTTCACCT+GGG - chr7_3:75357459-75357478 Msa1124210:intron 45.0%
!! AGCTTGCTAACTCAAGCCTT+TGG + chr7_3:75357505-75357524 None:intergenic 45.0%
CTTGAGTTAGCAAGCTACCA+TGG - chr7_3:75357509-75357528 Msa1124210:intron 45.0%
! AGCTACCATGGCATTTCTAG+TGG - chr7_3:75357521-75357540 Msa1124210:intron 45.0%
!! TACCATGGCATTTCTAGTGG+TGG - chr7_3:75357524-75357543 Msa1124210:intron 45.0%
TGAAGATACACTTCGGGGAT+TGG - chr7_3:75357625-75357644 Msa1124210:intron 45.0%
TTGGGCACGTTAGCTCAATA+GGG - chr7_3:75357714-75357733 Msa1124210:intron 45.0%
ATGTGGTGGTTGGAGTGAGA+AGG + chr7_3:75355330-75355349 None:intergenic 50.0%
CTCACTCCAACCACCACATT+TGG - chr7_3:75355331-75355350 Msa1124210:three_prime_UTR 50.0%
ACCTGATCACACAGCTTGTC+GGG + chr7_3:75356389-75356408 None:intergenic 50.0%
GCAGCAAGACCCAGAAAGTA+AGG - chr7_3:75356436-75356455 Msa1124210:CDS 50.0%
CGAGACACTTGCAGAGGAAT+TGG - chr7_3:75356548-75356567 Msa1124210:CDS 50.0%
CAGAGTCCTGATATCGCTCA+AGG - chr7_3:75356635-75356654 Msa1124210:CDS 50.0%
TCACCAGCACCAATTTCCTC+TGG + chr7_3:75356686-75356705 None:intergenic 50.0%
!! GAAATTGGTGCTGGTGACCA+AGG - chr7_3:75356689-75356708 Msa1124210:CDS 50.0%
GGTGACCAAGGTCACATGTT+TGG - chr7_3:75356701-75356720 Msa1124210:CDS 50.0%
TAGCTCAGGGGTTTCATCTG+TGG + chr7_3:75356732-75356751 None:intergenic 50.0%
GGTAAGTGGCATTAGCTCAG+GGG + chr7_3:75356744-75356763 None:intergenic 50.0%
GGGTAAGTGGCATTAGCTCA+GGG + chr7_3:75356745-75356764 None:intergenic 50.0%
TGGGTAAGTGGCATTAGCTC+AGG + chr7_3:75356746-75356765 None:intergenic 50.0%
GTAGCAAGCACATGGGTAAG+TGG + chr7_3:75356758-75356777 None:intergenic 50.0%
CCATGGCTCCGTTATCATTC+TGG + chr7_3:75356871-75356890 None:intergenic 50.0%
!! CCAGAATGATAACGGAGCCA+TGG - chr7_3:75356868-75356887 Msa1124210:intron 50.0%
AGATGAGGACAGTGTGCACA+CGG + chr7_3:75356901-75356920 None:intergenic 50.0%
! CATCGTGCTGAGTTGAGATG+AGG + chr7_3:75356916-75356935 None:intergenic 50.0%
!! ACCGACCAGATGGATTGAGA+TGG + chr7_3:75357033-75357052 None:intergenic 50.0%
ATTGACACCTATGGTGGCTG+GGG - chr7_3:75357106-75357125 Msa1124210:intron 50.0%
CCACTTCTATCGACCTTGGT+TGG + chr7_3:75357166-75357185 None:intergenic 50.0%
CCAACCAAGGTCGATAGAAG+TGG - chr7_3:75357163-75357182 Msa1124210:intron 50.0%
TAGGCAAGCAGCCAAAAGTG+TGG - chr7_3:75357198-75357217 Msa1124210:intron 50.0%
! GCCAAAAGTGTGGTAGCTTC+AGG - chr7_3:75357208-75357227 Msa1124210:intron 50.0%
! CCCTGAAGCTACCACACTTT+TGG + chr7_3:75357212-75357231 None:intergenic 50.0%
TGCAAGACGTTGCATTGTGC+AGG - chr7_3:75357234-75357253 Msa1124210:intron 50.0%
!!! GAGCATTTTGACTTCAGGCC+AGG - chr7_3:75357355-75357374 Msa1124210:intron 50.0%
! GGCCATATGCAGCAGTCTTT+TGG + chr7_3:75357429-75357448 None:intergenic 50.0%
CAGGATCATCCCGTCCAAAA+TGG + chr7_3:75357450-75357469 None:intergenic 50.0%
GGGATGATCCTGATTTCACC+TGG - chr7_3:75357458-75357477 Msa1124210:intron 50.0%
ACAGTCTCCCAGGTGAAATC+AGG + chr7_3:75357469-75357488 None:intergenic 50.0%
GAGTATCTTGACAGTCTCCC+AGG + chr7_3:75357479-75357498 None:intergenic 50.0%
CACCACCACTAGAAATGCCA+TGG + chr7_3:75357529-75357548 None:intergenic 50.0%
!! CATGGCATTTCTAGTGGTGG+TGG - chr7_3:75357527-75357546 Msa1124210:intron 50.0%
TACACTTCGGGGATTGGATG+TGG - chr7_3:75357631-75357650 Msa1124210:intron 50.0%
TTCGGGGATTGGATGTGGAA+AGG - chr7_3:75357636-75357655 Msa1124210:intron 50.0%
GTTGGGCACGTTAGCTCAAT+AGG - chr7_3:75357713-75357732 Msa1124210:intron 50.0%
TGGGCACGTTAGCTCAATAG+GGG - chr7_3:75357715-75357734 Msa1124210:intron 50.0%
CCTGATCACACAGCTTGTCG+GGG + chr7_3:75356388-75356407 None:intergenic 55.0%
GGACAGTGTGCACACGGATT+GGG + chr7_3:75356895-75356914 None:intergenic 55.0%
AGGACAGTGTGCACACGGAT+TGG + chr7_3:75356896-75356915 None:intergenic 55.0%
GTGAGTCCTGCATCTCCATG+AGG + chr7_3:75357070-75357089 None:intergenic 55.0%
CATGGAGATGCAGGACTCAC+TGG - chr7_3:75357070-75357089 Msa1124210:intron 55.0%
GAGATGCAGGACTCACTGGT+AGG - chr7_3:75357074-75357093 Msa1124210:intron 55.0%
TGCCCCACTTCTATCGACCT+TGG + chr7_3:75357170-75357189 None:intergenic 55.0%
CCCCGACAAGCTGTGTGATC+AGG - chr7_3:75356385-75356404 Msa1124210:CDS 60.0%
TGCGCATGGCTTAGGCCTGA+TGG - chr7_3:75356821-75356840 Msa1124210:intron 60.0%
!! GTGCACACGGATTGGGACCA+TGG + chr7_3:75356888-75356907 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+AGG - chr7_3:75357061-75357080 Msa1124210:intron 60.0%
ATGAGCACCCCAGCCACCAT+AGG + chr7_3:75357116-75357135 None:intergenic 60.0%
! TATGGTGGCTGGGGTGCTCA+TGG - chr7_3:75357115-75357134 Msa1124210:intron 60.0%
!! CATGGAGGAGGTGCCTTCTC+TGG - chr7_3:75357133-75357152 Msa1124210:intron 60.0%
!! AGGAGGTGCCTTCTCTGGCA+AGG - chr7_3:75357138-75357157 Msa1124210:intron 60.0%
GGTTGGGTCCTTGCCAGAGA+AGG + chr7_3:75357149-75357168 None:intergenic 60.0%
CTCTGGCAAGGACCCAACCA+AGG - chr7_3:75357150-75357169 Msa1124210:intron 60.0%
! GGTGGCTGGGGTGCTCATGG+AGG - chr7_3:75357118-75357137 Msa1124210:intron 70.0%
! GGCTGGGGTGCTCATGGAGG+AGG - chr7_3:75357121-75357140 Msa1124210:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75355155 75357940 75355155 ID=Msa1124210;Name=Msa1124210
chr7_3 mRNA 75355155 75357940 75355155 ID=Msa1124210-mRNA-1;Parent=Msa1124210;Name=Msa1124210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=200|1|1|1|0|0|2|427|390
chr7_3 exon 75355155 75356756 75355155 ID=Msa1124210-mRNA-1:exon:20212;Parent=Msa1124210-mRNA-1
chr7_3 exon 75357743 75357940 75357743 ID=Msa1124210-mRNA-1:exon:20211;Parent=Msa1124210-mRNA-1
chr7_3 five_prime_UTR 75357743 75357940 75357743 ID=Msa1124210-mRNA-1:five_prime_utr;Parent=Msa1124210-mRNA-1
chr7_3 five_prime_UTR 75356755 75356756 75356755 ID=Msa1124210-mRNA-1:five_prime_utr;Parent=Msa1124210-mRNA-1
chr7_3 CDS 75355582 75356754 75355582 ID=Msa1124210-mRNA-1:cds;Parent=Msa1124210-mRNA-1
chr7_3 three_prime_UTR 75355155 75355581 75355155 ID=Msa1124210-mRNA-1:three_prime_utr;Parent=Msa1124210-mRNA-1
Gene Sequence

>Msa1124210

ATGGAAACTTTCCTCTTCACCTCAGAATCTGTCAACGAAGGTCACCCCGACAAGCTGTGTGATCAGGTTTCAGATGCCATCCTTGATGCATGTTTGCAGCAAGACCCAGAAAGTAAGGTTGCATGTGAGACATGTACAAAGACTAACATGGTTATGGTCTTTGGTGAGATAACAACCAAGGCTACTGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGAGGAATTGGATTCGTATCAGCTGATGTTGGTCTTGATGCTGATAACTGCAAAGTTCTTGTCAACATTGAGCAACAGAGTCCTGATATCGCTCAAGGAGTTCATGGTCACTTGACCAAAAAACCAGAGGAAATTGGTGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACAGATGAAACCCCTGAGCTAATGCCACTTACCCATGTGCTTGCTACTAAACTCGGTGCAAAGCTCACTGAAGTTAGAAAGAACAAAACATGCGCATGGCTTAGGCCTGATGGTAAAACCCAAGTTACTGTTGAGTACCAGAATGATAACGGAGCCATGGTCCCAATCCGTGTGCACACTGTCCTCATCTCAACTCAGCACGATGAAACTGTCACAAATGAAAAAATTGCTGCAGATTTAAAAGAGCATGTGATTAAACCTGTTATCCCAGCAAAATACCTTGATGACAAGACTATCTTCCATCTCAATCCATCTGGTCGGTTTGTTATTGGTGGACCTCATGGAGATGCAGGACTCACTGGTAGGAAGATCATTATTGACACCTATGGTGGCTGGGGTGCTCATGGAGGAGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTCGATAGAAGTGGGGCATATATTGTTAGGCAAGCAGCCAAAAGTGTGGTAGCTTCAGGGCTTGCAAGACGTTGCATTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCACTTTCTGTATTTGTTGACACGTACAAAACAGGAAAAATTCCAGACAAGGACATCTTGGTTCTTATTAAAGAGCATTTTGACTTCAGGCCAGGAATGATTTCCAATAATCTTGACCTCAAAAGAGGTGGCAACTTCAGGTACCAAAAGACTGCTGCATATGGCCATTTTGGACGGGATGATCCTGATTTCACCTGGGAGACTGTCAAGATACTCAAGCCAAAGGCTTGA

Protein sequence

>Msa1124210

METFLFTSESVNEGHPDKLCDQVSDAILDACLQQDPESKVACETCTKTNMVMVFGEITTKATVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYQNDNGAMVPIRVHTVLISTQHDETVTNEKIAADLKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKEHFDFRPGMISNNLDLKRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPKA*