AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0020440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020440 MtrunA17_Chr1g0171771 97.778 495 8 3 1 495 1 492 0.0 986
Msa0020440 MtrunA17_Chr7g0256321 77.228 505 82 7 1 495 1 482 0.0 714
Msa0020440 MtrunA17_Chr5g0442661 33.418 392 217 9 2 386 54 408 6.42e-52 185
Msa0020440 MtrunA17_Chr2g0291741 33.333 384 229 9 6 386 44 403 7.26e-47 171
Msa0020440 MtrunA17_Chr2g0299621 30.295 373 215 8 24 388 65 400 8.68e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020440 AT2G41370.1 77.800 500 78 8 3 489 4 483 0.0 716
Msa0020440 AT3G57130.1 73.038 497 85 7 2 494 4 455 0.0 692
Msa0020440 AT3G57130.2 74.850 167 41 1 2 167 4 170 1.18e-84 259
Msa0020440 AT4G19660.1 30.334 389 221 8 3 386 42 385 8.20e-43 160
Msa0020440 AT4G19660.2 30.334 389 221 8 3 386 42 385 1.07e-42 160
Msa0020440 AT5G45110.1 30.649 385 234 8 6 386 40 395 2.92e-40 153
Msa0020440 AT5G45110.2 30.649 385 234 8 6 386 40 395 3.25e-40 152
Msa0020440 AT1G64280.1 29.412 357 220 7 32 386 73 399 4.46e-33 132
Msa0020440 AT4G26120.1 30.395 329 194 7 33 358 76 372 1.19e-32 131
Msa0020440 AT4G26120.2 30.395 329 194 7 33 358 77 373 1.30e-32 131

Find 164 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTGGTAACCTGAATT+TGG 0.137011 1_1:-35377579 Msa0020440:CDS
AGGTGCTTGGCTAGGATTTC+AGG 0.141453 1_1:+35378298 None:intergenic
TAGACGAAGGTCTTCGATTT+TGG 0.166923 1_1:+35378258 None:intergenic
AGTTATTATCATATAGTATT+AGG 0.188496 1_1:-35380805 Msa0020440:five_prime_UTR
CTCTTCAAAGGTGCTGTTCC+TGG 0.194491 1_1:-35377809 Msa0020440:CDS
TCACTCATTGGAGGGTAAAT+TGG 0.270490 1_1:+35377650 None:intergenic
GCCTCATTCGGCGGATCTTC+TGG 0.287511 1_1:+35378149 None:intergenic
AAACACAACCTTAACTTGTT+TGG 0.298334 1_1:+35377770 None:intergenic
GGCCGTTGATGAGGAGATTC+AGG 0.300581 1_1:+35380644 None:intergenic
TCCCACCTTGTTGCCAAGTC+TGG 0.333166 1_1:-35378328 Msa0020440:CDS
TGAAGAGAAAATCAGAGGTT+AGG 0.333207 1_1:+35377825 None:intergenic
CCAATCTTGAATCCAAATTC+AGG 0.338417 1_1:+35377567 None:intergenic
TTGTGGGCCGGACCCACCTT+CGG 0.340434 1_1:-35380524 Msa0020440:CDS
ACCACCTTGACGACGATTCA+TGG 0.340475 1_1:+35377472 None:intergenic
GTTATTATCATATAGTATTA+GGG 0.344825 1_1:-35380804 Msa0020440:five_prime_UTR
GAGGATCCTCCTCCTCCTAT+TGG 0.345044 1_1:+35380493 None:intergenic
TGTGGGCCGGACCCACCTTC+GGG 0.345919 1_1:-35380523 Msa0020440:CDS
AAACAAGTTAAGGTTGTGTT+TGG 0.350359 1_1:-35377768 Msa0020440:CDS
CCTGAATTTGGATTCAAGAT+TGG 0.383208 1_1:-35377567 Msa0020440:CDS
AGTCAAGGGCCCGCCTCATT+CGG 0.384222 1_1:+35378137 None:intergenic
TACAATCTATTGAACAGTTT+AGG 0.384643 1_1:+35380776 None:intergenic
AGGATCCTCCTCCTCCTATT+GGG 0.401164 1_1:+35380494 None:intergenic
ATAAGAGATGAGTGAGTGAT+TGG 0.406057 1_1:+35380864 None:intergenic
CAACCTTGGTGCTACTCAAA+TGG 0.408123 1_1:-35377537 Msa0020440:CDS
GGAACATGTTGTCCAAAGTT+GGG 0.412725 1_1:+35378348 None:intergenic
ATGAAATAGTGAAGAGAGGT+TGG 0.415558 1_1:+35380888 None:intergenic
TCAAACACAGTAACAGAAAC+AGG 0.416094 1_1:-35380724 Msa0020440:five_prime_UTR
GGGAACATGTTGTCCAAAGT+TGG 0.416120 1_1:+35378347 None:intergenic
AGCAAGAAATGCCCCAACTT+TGG 0.416180 1_1:-35378360 Msa0020440:CDS
AGCAAAACTGCCACCATCTC+CGG 0.432155 1_1:+35377914 None:intergenic
TTTCCAAGTTGAAGGTCGTT+TGG 0.433438 1_1:-35380602 Msa0020440:CDS
AACTACCCGGCTGGACCCGC+CGG 0.434820 1_1:-35377974 Msa0020440:CDS
GATGATGGTGATGGTGGTGG+TGG 0.440460 1_1:+35378200 None:intergenic
GATGATGATGGTGATGGTGG+TGG 0.443920 1_1:+35378197 None:intergenic
ACATTGAACCAAACAAGTTA+AGG 0.445023 1_1:-35377778 Msa0020440:CDS
CCTTCATGTGGCTGCCGAGA+TGG 0.445464 1_1:-35377942 Msa0020440:CDS
CACCCTCTCTCACCACAATT+AGG 0.446076 1_1:+35380343 None:intergenic
GAAGAGAAAATCAGAGGTTA+GGG 0.447796 1_1:+35377826 None:intergenic
CTGCTATGATCTTCACTCAT+TGG 0.449669 1_1:+35377638 None:intergenic
CGTTGATGGTGTGACACCTT+TGG 0.451435 1_1:-35377861 Msa0020440:CDS
GACGTCACTTTCCAAGTTGA+AGG 0.452431 1_1:-35380610 Msa0020440:CDS
GAGATCTTAGAGTCTCTTCA+AGG 0.454395 1_1:+35380680 None:intergenic
CCCACAGTTAGAACCGTTGA+TGG 0.458083 1_1:-35377875 Msa0020440:CDS
CCGCAGCACCGAGCTCAAGC+AGG 0.464118 1_1:+35378002 None:intergenic
GAGGCGGGCCCTTGACTCCT+CGG 0.472933 1_1:-35378131 Msa0020440:CDS
CACTGTACAGAAACTGCAAC+AGG 0.473588 1_1:+35380404 None:intergenic
GCAGGGCTTTCACCACTTCT+CGG 0.476184 1_1:+35378020 None:intergenic
TCTAGTCCCGAAGGTGGGTC+CGG 0.476408 1_1:+35380517 None:intergenic
GGTTCAATGTGGTTTAATCC+AGG 0.482214 1_1:+35377791 None:intergenic
TTCAGGTGGGAGACCAGACT+TGG 0.483118 1_1:+35378315 None:intergenic
GAACCAAACGACCTTCAACT+TGG 0.483511 1_1:+35380599 None:intergenic
CAAAGTATCTAGCGGCAGCT+AGG 0.487700 1_1:+35380275 None:intergenic
GTGGTGGTGGAGTGGCATTA+AGG 0.499723 1_1:+35378213 None:intergenic
TATGATAATAACTCCTCAAA+AGG 0.499949 1_1:+35380815 None:intergenic
CTAGCTGCCGCTAGATACTT+TGG 0.502823 1_1:-35380274 Msa0020440:CDS
AGTACGACCTGGTGTCATTC+CGG 0.503385 1_1:-35380458 Msa0020440:CDS
CCTTCGGGACTAGACCCAAT+AGG 0.503671 1_1:-35380508 Msa0020440:CDS
CTCTCACCACAATTAGGTCT+AGG 0.504177 1_1:+35380349 None:intergenic
TTTGAGTAGCACCAAGGTTG+AGG 0.505083 1_1:+35377540 None:intergenic
GAAGATCCGCCGAATGAGGC+GGG 0.506861 1_1:-35378146 Msa0020440:CDS
TTTCATCACATCGTCTATTG+AGG 0.507838 1_1:+35378402 None:intergenic
TAGCGGCAGCTAGGGTATCA+AGG 0.512363 1_1:+35380284 None:intergenic
GGCTGCCGAGATGGTGTCTC+CGG 0.517256 1_1:-35377933 Msa0020440:CDS
TGGTGATGGTGGTGGTGGAG+TGG 0.521989 1_1:+35378205 None:intergenic
TGAAATAGTGAAGAGAGGTT+GGG 0.522658 1_1:+35380889 None:intergenic
CTATGATCTTCACTCATTGG+AGG 0.522815 1_1:+35377641 None:intergenic
AATCGTCGTCAAGGTGGTCA+TGG 0.523469 1_1:-35377467 Msa0020440:CDS
CATCATCATCACCACGACTT+TGG 0.524100 1_1:-35378184 Msa0020440:CDS
CCTGCTTGAGCTCGGTGCTG+CGG 0.525550 1_1:-35378002 Msa0020440:CDS
AACGTCAATGGAGAGGTGCT+TGG 0.526797 1_1:+35378285 None:intergenic
CGCAGCACCGAGCTCAAGCA+GGG 0.529631 1_1:+35378003 None:intergenic
GAGAGTGATGATACATTGTT+GGG 0.530555 1_1:+35377438 None:intergenic
AAACTCATGGTCATGGGAGA+AGG 0.530916 1_1:-35378094 Msa0020440:CDS
AAGTGACGTCGCTGAAGGCT+TGG 0.531189 1_1:+35380623 None:intergenic
CATTAAGGAGCGGCGTGCTA+AGG 0.535278 1_1:+35378228 None:intergenic
GCGGATGTTAACTACCCGGC+TGG 0.535668 1_1:-35377983 Msa0020440:CDS
CGAGATGGTGTCTCCGGAGA+TGG 0.536869 1_1:-35377927 Msa0020440:CDS
ATCTATTGAACAGTTTAGGT+TGG 0.538377 1_1:+35380780 None:intergenic
AAAGTATCTAGCGGCAGCTA+GGG 0.539768 1_1:+35380276 None:intergenic
ACTAGTCAAACTCATGGTCA+TGG 0.542747 1_1:-35378101 Msa0020440:CDS
GTGAAAGCCCTGCTTGAGCT+CGG 0.543745 1_1:-35378010 Msa0020440:CDS
GTTCGACATCCGAGGAGTCA+AGG 0.544297 1_1:+35378122 None:intergenic
AATAATAACAACAACAACAT+TGG 0.546735 1_1:-35377593 Msa0020440:CDS
TGCTTGGCTAGGATTTCAGG+TGG 0.547432 1_1:+35378301 None:intergenic
CAATGGAGAGGTGCTTGGCT+AGG 0.548508 1_1:+35378290 None:intergenic
TTCGACATCCGAGGAGTCAA+GGG 0.549310 1_1:+35378123 None:intergenic
TTGGAAAGTGACGTCGCTGA+AGG 0.550213 1_1:+35380618 None:intergenic
TGAGAGTGATGATACATTGT+TGG 0.550269 1_1:+35377437 None:intergenic
TCTAAACCTTGATGAAGCAT+TGG 0.553658 1_1:-35378071 Msa0020440:CDS
CTAGACCCAATAGGAGGAGG+AGG 0.555801 1_1:-35380499 Msa0020440:CDS
ACTACCCGGCTGGACCCGCC+GGG 0.556122 1_1:-35377973 Msa0020440:CDS
TGAAGGCTTGGCCGTTGATG+AGG 0.557454 1_1:+35380635 None:intergenic
GTCATTCCGGTGAACTCAGT+CGG 0.558544 1_1:-35380445 Msa0020440:CDS
TGAGGAGATTCAGGTAGTCA+AGG 0.559086 1_1:+35380653 None:intergenic
CCATCTCGGCAGCCACATGA+AGG 0.559458 1_1:+35377942 None:intergenic
ACCAGAAGATCCGCCGAATG+AGG 0.562667 1_1:-35378150 Msa0020440:CDS
GATCATAGCAGCAGTAGCAG+TGG 0.565707 1_1:-35377626 Msa0020440:CDS
CAAGGGCCCGCCTCATTCGG+CGG 0.566384 1_1:+35378140 None:intergenic
GAGGAGATTCAGGTAGTCAA+GGG 0.566596 1_1:+35380654 None:intergenic
ACAGAAACTGCAACAGGAGG+AGG 0.567674 1_1:+35380410 None:intergenic
ACAGCTTGCATTGCTCACTC+AGG 0.569799 1_1:-35380245 Msa0020440:intron
TAAGGAGCGGCGTGCTAAGG+AGG 0.570125 1_1:+35378231 None:intergenic
CTGTTGCAGTTTCTGTACAG+TGG 0.573942 1_1:-35380403 Msa0020440:CDS
AGAAGATCCGCCGAATGAGG+CGG 0.577712 1_1:-35378147 Msa0020440:CDS
AGATCTTAGAGTCTCTTCAA+GGG 0.579610 1_1:+35380681 None:intergenic
CTAGTCAAACTCATGGTCAT+GGG 0.581311 1_1:-35378100 Msa0020440:CDS
GATGGTGTCTCCGGAGATGG+TGG 0.581564 1_1:-35377924 Msa0020440:CDS
CGGGAAAACTTCCCTTCATG+TGG 0.583747 1_1:-35377954 Msa0020440:CDS
GGTCTAGGCTCATGTTTCTG+AGG 0.584293 1_1:+35380364 None:intergenic
ATTGGGTCTAGTCCCGAAGG+TGG 0.584493 1_1:+35380511 None:intergenic
GACCTAATTGTGGTGAGAGA+GGG 0.584783 1_1:-35380345 Msa0020440:CDS
GGTGATGATGATGGTGATGG+TGG 0.585530 1_1:+35378194 None:intergenic
ACCATCAACGGTTCTAACTG+TGG 0.586558 1_1:+35377874 None:intergenic
GTAATGCCAATGCTTCATCA+AGG 0.588210 1_1:+35378065 None:intergenic
AAGGGCAAGATCAACGGCTG+AGG 0.588511 1_1:+35380303 None:intergenic
AGACCTAATTGTGGTGAGAG+AGG 0.589965 1_1:-35380346 Msa0020440:CDS
CAAAGGTGTCACACCATCAA+CGG 0.591793 1_1:+35377862 None:intergenic
TGAGAATTGTAGCCGAGAAG+TGG 0.593437 1_1:-35378032 Msa0020440:CDS
CCTATTGGGTCTAGTCCCGA+AGG 0.597805 1_1:+35380508 None:intergenic
GCAGAAGCAACTAGTGAGCA+TGG 0.601200 1_1:-35378434 Msa0020440:intron
AGATTGGTGTACCTCAACCT+TGG 0.604156 1_1:-35377551 Msa0020440:CDS
CCATCAACGGTTCTAACTGT+GGG 0.604614 1_1:+35377875 None:intergenic
CGTGGTGATGATGATGGTGA+TGG 0.605066 1_1:+35378191 None:intergenic
TATGATCTTCACTCATTGGA+GGG 0.606499 1_1:+35377642 None:intergenic
ACCAGACTTGGCAACAAGGT+GGG 0.607953 1_1:+35378327 None:intergenic
CAAAGTCGTGGTGATGATGA+TGG 0.608219 1_1:+35378185 None:intergenic
GGACTAGACCCAATAGGAGG+AGG 0.611118 1_1:-35380502 Msa0020440:CDS
GAGTTCACCGGAATGACACC+AGG 0.611897 1_1:+35380451 None:intergenic
GGTATCAAGGGCAAGATCAA+CGG 0.613359 1_1:+35380297 None:intergenic
ATCGCTGCATCTTAGCAGCA+AGG 0.614656 1_1:-35380570 Msa0020440:CDS
TTTGACTAGTTCGACATCCG+AGG 0.618914 1_1:+35378114 None:intergenic
ACCTTTGAAGAGAAAATCAG+AGG 0.620921 1_1:+35377820 None:intergenic
TACCTGAATCTCCTCATCAA+CGG 0.622639 1_1:-35380646 Msa0020440:CDS
CTTGGTGCTACTCAAATGGA+TGG 0.623070 1_1:-35377533 Msa0020440:CDS
AGCGGCAGCTAGGGTATCAA+GGG 0.623566 1_1:+35380285 None:intergenic
GAAGCCATGAATCGTCGTCA+AGG 0.625063 1_1:-35377476 Msa0020440:CDS
TTCTAACTGTGGGATCTGCA+TGG 0.627211 1_1:+35377885 None:intergenic
TCGTAGCCGACTGAGTTCAC+CGG 0.627960 1_1:+35380439 None:intergenic
GAACATGTTGTCCAAAGTTG+GGG 0.630070 1_1:+35378349 None:intergenic
TGGCGACAACGTCAATGGAG+AGG 0.634502 1_1:+35378278 None:intergenic
TGTCGAACTAGTCAAACTCA+TGG 0.636426 1_1:-35378107 Msa0020440:CDS
TTGGGTCTAGTCCCGAAGGT+GGG 0.636525 1_1:+35380512 None:intergenic
GGTGGAGTGGCATTAAGGAG+CGG 0.636797 1_1:+35378218 None:intergenic
GGAGACCAGACTTGGCAACA+AGG 0.637078 1_1:+35378323 None:intergenic
TCGTACTGTCGGCTGACGAG+AGG 0.637585 1_1:+35380474 None:intergenic
ATTGTGGTGAGAGAGGGTGC+TGG 0.639310 1_1:-35380339 Msa0020440:CDS
CATCTCCGGAGACACCATCT+CGG 0.640201 1_1:+35377928 None:intergenic
TTAACTTGTTTGGTTCAATG+TGG 0.642616 1_1:+35377780 None:intergenic
CATCTCGGCAGCCACATGAA+GGG 0.642619 1_1:+35377943 None:intergenic
ATGACACCAGGTCGTACTGT+CGG 0.652727 1_1:+35380463 None:intergenic
CATGAGCCTAGACCTAATTG+TGG 0.655015 1_1:-35380355 Msa0020440:CDS
CGTCAGCCGACAGTACGACC+TGG 0.655540 1_1:-35380469 Msa0020440:CDS
CTTCGAAGTCACCAAAGTCG+TGG 0.659191 1_1:+35378173 None:intergenic
GACCAGACTTGGCAACAAGG+TGG 0.659215 1_1:+35378326 None:intergenic
TCGGGACTAGACCCAATAGG+AGG 0.661393 1_1:-35380505 Msa0020440:CDS
TGGAATGAAATAGTGAAGAG+AGG 0.664765 1_1:+35380884 None:intergenic
TGCTGCGGATGTTAACTACC+CGG 0.669914 1_1:-35377987 Msa0020440:CDS
AGGGTTCTAAGTATATCCAA+AGG 0.671624 1_1:+35377845 None:intergenic
TTCAACGCCAAAGTATCTAG+CGG 0.678772 1_1:+35380267 None:intergenic
TGTACAGAAACTGCAACAGG+AGG 0.681852 1_1:+35380407 None:intergenic
GCTTGGCTAGGATTTCAGGT+GGG 0.683050 1_1:+35378302 None:intergenic
CATCCATTTGAGTAGCACCA+AGG 0.686782 1_1:+35377534 None:intergenic
GCCATGAATCGTCGTCAAGG+TGG 0.689108 1_1:-35377473 Msa0020440:CDS
GGTGAACTCAGTCGGCTACG+AGG 0.709456 1_1:-35380437 Msa0020440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATTTTTTAGTTTTG+GGG + chr1_1:35378789-35378808 None:intergenic 10.0%
!!! GTTTTAAATTTTTTAGTTTT+GGG + chr1_1:35378790-35378809 None:intergenic 10.0%
!!! TGTTTTAAATTTTTTAGTTT+TGG + chr1_1:35378791-35378810 None:intergenic 10.0%
!!! AATTTTTAAAATTACAGTTT+TGG + chr1_1:35378818-35378837 None:intergenic 10.0%
!!! TAAAAACTAAAAAATGTTTT+TGG - chr1_1:35378871-35378890 Msa0020440:intron 10.0%
!!! AAAAACTAAAAAATGTTTTT+GGG - chr1_1:35378872-35378891 Msa0020440:intron 10.0%
!! AGTTATTATCATATAGTATT+AGG - chr1_1:35377542-35377561 Msa0020440:CDS 15.0%
!! GTTATTATCATATAGTATTA+GGG - chr1_1:35377543-35377562 Msa0020440:CDS 15.0%
!!! TTTTTAGTCAACTTTTTTTT+TGG - chr1_1:35378352-35378371 Msa0020440:CDS 15.0%
!!! TTTTAGTCAACTTTTTTTTT+GGG - chr1_1:35378353-35378372 Msa0020440:CDS 15.0%
!!! TTTTATTTTTGAGTCTATAT+AGG - chr1_1:35378438-35378457 Msa0020440:intron 15.0%
!!! TTTATTTTTGAGTCTATATA+GGG - chr1_1:35378439-35378458 Msa0020440:intron 15.0%
!! AAAAAACTAAAACATGTAAA+AGG + chr1_1:35378763-35378782 None:intergenic 15.0%
!! TACATATTAGACTTATAATT+TGG - chr1_1:35378914-35378933 Msa0020440:intron 15.0%
!! AGAAAAATTGTATTGAAAAA+TGG + chr1_1:35379441-35379460 None:intergenic 15.0%
!!! ATAAAGATTTTATGTTGTAA+GGG + chr1_1:35379771-35379790 None:intergenic 15.0%
!!! TATAAAGATTTTATGTTGTA+AGG + chr1_1:35379772-35379791 None:intergenic 15.0%
!!! TTTAGTCAACTTTTTTTTTG+GGG - chr1_1:35378354-35378373 Msa0020440:CDS 20.0%
!! TATAGAACTACCTAAAATAA+GGG + chr1_1:35378387-35378406 None:intergenic 20.0%
!! TTATAGAACTACCTAAAATA+AGG + chr1_1:35378388-35378407 None:intergenic 20.0%
!!! TTTGAAATAGTTTTGGTTTT+CGG - chr1_1:35378699-35378718 Msa0020440:intron 20.0%
!! AATGCAAAAATGAAATAGAA+GGG + chr1_1:35379224-35379243 None:intergenic 20.0%
!! AAATGCAAAAATGAAATAGA+AGG + chr1_1:35379225-35379244 None:intergenic 20.0%
!!! ATAAAGTGATTTGATGATTT+GGG - chr1_1:35379538-35379557 Msa0020440:intron 20.0%
!! TCATGAATTAAACTTAACAT+TGG - chr1_1:35379592-35379611 Msa0020440:intron 20.0%
!! TAAAATATGGCAAATGTTAA+GGG + chr1_1:35379680-35379699 None:intergenic 20.0%
!! TTAAAATATGGCAAATGTTA+AGG + chr1_1:35379681-35379700 None:intergenic 20.0%
!!! CTCTGTACAAATTTAAAATA+TGG + chr1_1:35379693-35379712 None:intergenic 20.0%
!! CTATAAAAGATTACTTCAAT+TGG - chr1_1:35379803-35379822 Msa0020440:intron 20.0%
!! AATAATAACAACAACAACAT+TGG - chr1_1:35380754-35380773 Msa0020440:five_prime_UTR 20.0%
! TATGATAATAACTCCTCAAA+AGG + chr1_1:35377535-35377554 None:intergenic 25.0%
! TACAATCTATTGAACAGTTT+AGG + chr1_1:35377574-35377593 None:intergenic 25.0%
! ATAGAACTACCTAAAATAAG+GGG + chr1_1:35378386-35378405 None:intergenic 25.0%
! TAGTAAGAGTAATGATATGA+GGG + chr1_1:35378504-35378523 None:intergenic 25.0%
! ATAGTAAGAGTAATGATATG+AGG + chr1_1:35378505-35378524 None:intergenic 25.0%
! GTTGAGGTTATAAAACAAAT+TGG - chr1_1:35378590-35378609 Msa0020440:intron 25.0%
!!! TTTGGTGTTTGAAATAGTTT+TGG - chr1_1:35378692-35378711 Msa0020440:intron 25.0%
!!! TGATTTAGTTTGTTCTCTTT+TGG + chr1_1:35379123-35379142 None:intergenic 25.0%
!! GAAATTGTGAATTTTCTTTG+AGG + chr1_1:35379307-35379326 None:intergenic 25.0%
!! CATAAAGTGATTTGATGATT+TGG - chr1_1:35379537-35379556 Msa0020440:intron 25.0%
!! TAAAGTGATTTGATGATTTG+GGG - chr1_1:35379539-35379558 Msa0020440:intron 25.0%
! GTTAAGTTTAATTCATGACT+TGG + chr1_1:35379590-35379609 None:intergenic 25.0%
!! CCTTAAATACACTTTTCTTA+TGG + chr1_1:35379728-35379747 None:intergenic 25.0%
!! CCATAAGAAAAGTGTATTTA+AGG - chr1_1:35379725-35379744 Msa0020440:intron 25.0%
!! AAGAAAAGTGTATTTAAGGA+AGG - chr1_1:35379729-35379748 Msa0020440:intron 25.0%
!! AGAAAAGTGTATTTAAGGAA+GGG - chr1_1:35379730-35379749 Msa0020440:intron 25.0%
ATCTATTGAACAGTTTAGGT+TGG + chr1_1:35377570-35377589 None:intergenic 30.0%
! TTCTTCAGGAAATTCTTTTG+TGG - chr1_1:35377806-35377825 Msa0020440:CDS 30.0%
! TCTTCAGGAAATTCTTTTGT+GGG - chr1_1:35377807-35377826 Msa0020440:CDS 30.0%
TTTGAGTCTATATAGGGATT+TGG - chr1_1:35378445-35378464 Msa0020440:intron 30.0%
AATGATATGAGGGAATTTCT+TGG + chr1_1:35378494-35378513 None:intergenic 30.0%
AAACATTCAAAACAGACGAT+AGG - chr1_1:35378652-35378671 Msa0020440:intron 30.0%
AACATTCAAAACAGACGATA+GGG - chr1_1:35378653-35378672 Msa0020440:intron 30.0%
TGGTACATGAAATCAATGAA+GGG + chr1_1:35378950-35378969 None:intergenic 30.0%
ATGTATAGAGTTTCTCGAAT+TGG - chr1_1:35378971-35378990 Msa0020440:intron 30.0%
CACAAAATCTTTCCTAAAGA+TGG - chr1_1:35379071-35379090 Msa0020440:intron 30.0%
!!! TTTAGTTTGTTCTCTTTTGG+AGG + chr1_1:35379120-35379139 None:intergenic 30.0%
TGGAAAAAAGTGAGATTTGT+TGG + chr1_1:35379252-35379271 None:intergenic 30.0%
!! GAATTTTCTTTGAGGACTTA+TGG + chr1_1:35379299-35379318 None:intergenic 30.0%
! AATGTTAAAGAGTACGCTTA+GGG + chr1_1:35379487-35379506 None:intergenic 30.0%
! AAATGTTAAAGAGTACGCTT+AGG + chr1_1:35379488-35379507 None:intergenic 30.0%
!! TTAACTTGTTTGGTTCAATG+TGG + chr1_1:35380570-35380589 None:intergenic 30.0%
ACATTGAACCAAACAAGTTA+AGG - chr1_1:35380569-35380588 Msa0020440:CDS 30.0%
!! AAACACAACCTTAACTTGTT+TGG + chr1_1:35380580-35380599 None:intergenic 30.0%
AAACAAGTTAAGGTTGTGTT+TGG - chr1_1:35380579-35380598 Msa0020440:CDS 30.0%
TGAAATAGTGAAGAGAGGTT+GGG + chr1_1:35377461-35377480 None:intergenic 35.0%
ATGAAATAGTGAAGAGAGGT+TGG + chr1_1:35377462-35377481 None:intergenic 35.0%
TGGAATGAAATAGTGAAGAG+AGG + chr1_1:35377466-35377485 None:intergenic 35.0%
ATAAGAGATGAGTGAGTGAT+TGG + chr1_1:35377486-35377505 None:intergenic 35.0%
! TCTCTTTTTCTCACCTTTTG+AGG - chr1_1:35377519-35377538 Msa0020440:CDS 35.0%
TCAAACACAGTAACAGAAAC+AGG - chr1_1:35377623-35377642 Msa0020440:CDS 35.0%
AGATCTTAGAGTCTCTTCAA+GGG + chr1_1:35377669-35377688 None:intergenic 35.0%
!!! ATGGTTTTTGGAATGTGGAA+AGG - chr1_1:35378292-35378311 Msa0020440:CDS 35.0%
!!! TGGTTTTTGGAATGTGGAAA+GGG - chr1_1:35378293-35378312 Msa0020440:CDS 35.0%
AACAAGTTCTCACTCTTACT+TGG - chr1_1:35378554-35378573 Msa0020440:intron 35.0%
ACAAGTTCTCACTCTTACTT+GGG - chr1_1:35378555-35378574 Msa0020440:intron 35.0%
ACATTCAAAACAGACGATAG+GGG - chr1_1:35378654-35378673 Msa0020440:intron 35.0%
!! GGGTCTGTTTGAAATAGTTT+TGG - chr1_1:35378674-35378693 Msa0020440:intron 35.0%
GTGGTACATGAAATCAATGA+AGG + chr1_1:35378951-35378970 None:intergenic 35.0%
TTCGAGAAACTCTATACATG+TGG + chr1_1:35378970-35378989 None:intergenic 35.0%
! GATTTTGTGTGCTTCATTTG+CGG + chr1_1:35379060-35379079 None:intergenic 35.0%
!! TCACTTTCCTCATTTGGTTT+TGG - chr1_1:35379094-35379113 Msa0020440:intron 35.0%
AGGGAGAGAAAAAATGTTGA+GGG + chr1_1:35379205-35379224 None:intergenic 35.0%
AAGGGAGAGAAAAAATGTTG+AGG + chr1_1:35379206-35379225 None:intergenic 35.0%
!! TTTTGATAGCACTGGGTTTA+TGG + chr1_1:35379272-35379291 None:intergenic 35.0%
!! TGGCAAATTTTGATAGCACT+GGG + chr1_1:35379279-35379298 None:intergenic 35.0%
!! ATGGCAAATTTTGATAGCAC+TGG + chr1_1:35379280-35379299 None:intergenic 35.0%
TTTCATCACATCGTCTATTG+AGG + chr1_1:35379948-35379967 None:intergenic 35.0%
TCTAAACCTTGATGAAGCAT+TGG - chr1_1:35380276-35380295 Msa0020440:CDS 35.0%
!! AGGGTTCTAAGTATATCCAA+AGG + chr1_1:35380505-35380524 None:intergenic 35.0%
GAAGAGAAAATCAGAGGTTA+GGG + chr1_1:35380524-35380543 None:intergenic 35.0%
TGAAGAGAAAATCAGAGGTT+AGG + chr1_1:35380525-35380544 None:intergenic 35.0%
! ACCTCTGATTTTCTCTTCAA+AGG - chr1_1:35380526-35380545 Msa0020440:CDS 35.0%
! ACCTTTGAAGAGAAAATCAG+AGG + chr1_1:35380530-35380549 None:intergenic 35.0%
TATGATCTTCACTCATTGGA+GGG + chr1_1:35380708-35380727 None:intergenic 35.0%
! CAACATTGGTAACCTGAATT+TGG - chr1_1:35380768-35380787 Msa0020440:five_prime_UTR 35.0%
CCAATCTTGAATCCAAATTC+AGG + chr1_1:35380783-35380802 None:intergenic 35.0%
CCTGAATTTGGATTCAAGAT+TGG - chr1_1:35380780-35380799 Msa0020440:five_prime_UTR 35.0%
GAGAGTGATGATACATTGTT+GGG + chr1_1:35380912-35380931 None:intergenic 35.0%
TGAGAGTGATGATACATTGT+TGG + chr1_1:35380913-35380932 None:intergenic 35.0%
AAGGTGAGAAAAAGAGAGAG+AGG + chr1_1:35377516-35377535 None:intergenic 40.0%
GAGATCTTAGAGTCTCTTCA+AGG + chr1_1:35377670-35377689 None:intergenic 40.0%
TACCTGAATCTCCTCATCAA+CGG - chr1_1:35377701-35377720 Msa0020440:CDS 40.0%
! TTTCCAAGTTGAAGGTCGTT+TGG - chr1_1:35377745-35377764 Msa0020440:CDS 40.0%
! TTCAACGCCAAAGTATCTAG+CGG + chr1_1:35378083-35378102 None:intergenic 40.0%
! GTGACCAGTCATATGTTTTC+TGG - chr1_1:35378247-35378266 Msa0020440:CDS 40.0%
CTTGCCAGAAAACATATGAC+TGG + chr1_1:35378254-35378273 None:intergenic 40.0%
!! GTCATATGTTTTCTGGCAAG+CGG - chr1_1:35378254-35378273 Msa0020440:CDS 40.0%
!! AAGGGAAAGGGTATGGTTTT+TGG - chr1_1:35378280-35378299 Msa0020440:CDS 40.0%
!!! AGGGTATGGTTTTTGGAATG+TGG - chr1_1:35378287-35378306 Msa0020440:CDS 40.0%
!!! GGTTTTTGGAATGTGGAAAG+GGG - chr1_1:35378294-35378313 Msa0020440:CDS 40.0%
!!! GGGTTTGTTCCCCTTATTTT+AGG - chr1_1:35378374-35378393 Msa0020440:CDS 40.0%
TCATTTGCGGAAGACAAGAT+TGG + chr1_1:35379047-35379066 None:intergenic 40.0%
TGAGGAAAGTGACCATCTTT+AGG + chr1_1:35379086-35379105 None:intergenic 40.0%
! AGATGGTCACTTTCCTCATT+TGG - chr1_1:35379088-35379107 Msa0020440:intron 40.0%
GGGAGAGAAAAAATGTTGAG+GGG + chr1_1:35379204-35379223 None:intergenic 40.0%
! AGTGATTTGATGATTTGGGG+AGG - chr1_1:35379542-35379561 Msa0020440:intron 40.0%
! ATGATTTGGGGAGGAACATA+GGG - chr1_1:35379551-35379570 Msa0020440:intron 40.0%
GAACATGTTGTCCAAAGTTG+GGG + chr1_1:35380001-35380020 None:intergenic 40.0%
GGAACATGTTGTCCAAAGTT+GGG + chr1_1:35380002-35380021 None:intergenic 40.0%
! TAGACGAAGGTCTTCGATTT+TGG + chr1_1:35380092-35380111 None:intergenic 40.0%
! CTAAGGAGGATTTTAGACGA+AGG + chr1_1:35380105-35380124 None:intergenic 40.0%
TGTCGAACTAGTCAAACTCA+TGG - chr1_1:35380240-35380259 Msa0020440:intron 40.0%
ACTAGTCAAACTCATGGTCA+TGG - chr1_1:35380246-35380265 Msa0020440:CDS 40.0%
CTAGTCAAACTCATGGTCAT+GGG - chr1_1:35380247-35380266 Msa0020440:CDS 40.0%
GTAATGCCAATGCTTCATCA+AGG + chr1_1:35380285-35380304 None:intergenic 40.0%
GGTTCAATGTGGTTTAATCC+AGG + chr1_1:35380559-35380578 None:intergenic 40.0%
TCACTCATTGGAGGGTAAAT+TGG + chr1_1:35380700-35380719 None:intergenic 40.0%
CTATGATCTTCACTCATTGG+AGG + chr1_1:35380709-35380728 None:intergenic 40.0%
CTGCTATGATCTTCACTCAT+TGG + chr1_1:35380712-35380731 None:intergenic 40.0%
GAGGAGATTCAGGTAGTCAA+GGG + chr1_1:35377696-35377715 None:intergenic 45.0%
TGAGGAGATTCAGGTAGTCA+AGG + chr1_1:35377697-35377716 None:intergenic 45.0%
! GACGTCACTTTCCAAGTTGA+AGG - chr1_1:35377737-35377756 Msa0020440:CDS 45.0%
GAACCAAACGACCTTCAACT+TGG + chr1_1:35377751-35377770 None:intergenic 45.0%
! CAGCAAGGAGTCTTTTCTTC+AGG - chr1_1:35377792-35377811 Msa0020440:CDS 45.0%
! CAGGAAATTCTTTTGTGGGC+CGG - chr1_1:35377811-35377830 Msa0020440:CDS 45.0%
TGTACAGAAACTGCAACAGG+AGG + chr1_1:35377943-35377962 None:intergenic 45.0%
CACTGTACAGAAACTGCAAC+AGG + chr1_1:35377946-35377965 None:intergenic 45.0%
CTGTTGCAGTTTCTGTACAG+TGG - chr1_1:35377944-35377963 Msa0020440:CDS 45.0%
CATGAGCCTAGACCTAATTG+TGG - chr1_1:35377992-35378011 Msa0020440:CDS 45.0%
CTCTCACCACAATTAGGTCT+AGG + chr1_1:35378001-35378020 None:intergenic 45.0%
AGACCTAATTGTGGTGAGAG+AGG - chr1_1:35378001-35378020 Msa0020440:CDS 45.0%
GACCTAATTGTGGTGAGAGA+GGG - chr1_1:35378002-35378021 Msa0020440:CDS 45.0%
GGTATCAAGGGCAAGATCAA+CGG + chr1_1:35378053-35378072 None:intergenic 45.0%
! AAAGTATCTAGCGGCAGCTA+GGG + chr1_1:35378074-35378093 None:intergenic 45.0%
!! ATATGTTTTCTGGCAAGCGG+AGG - chr1_1:35378257-35378276 Msa0020440:CDS 45.0%
GAGGGAATTTCTTGGAAGAG+AGG + chr1_1:35378486-35378505 None:intergenic 45.0%
! TGGGATTGAGACTTGAGTTG+AGG - chr1_1:35378574-35378593 Msa0020440:intron 45.0%
TTGGAGGCCAAAACCAAATG+AGG + chr1_1:35379104-35379123 None:intergenic 45.0%
! GATGATTTGGGGAGGAACAT+AGG - chr1_1:35379550-35379569 Msa0020440:intron 45.0%
AGCAAGAAATGCCCCAACTT+TGG - chr1_1:35379987-35380006 Msa0020440:intron 45.0%
GGGAACATGTTGTCCAAAGT+TGG + chr1_1:35380003-35380022 None:intergenic 45.0%
!! GATTTTGGCGACAACGTCAA+TGG + chr1_1:35380077-35380096 None:intergenic 45.0%
! CAAAGTCGTGGTGATGATGA+TGG + chr1_1:35380165-35380184 None:intergenic 45.0%
CATCATCATCACCACGACTT+TGG - chr1_1:35380163-35380182 Msa0020440:intron 45.0%
! TTTGACTAGTTCGACATCCG+AGG + chr1_1:35380236-35380255 None:intergenic 45.0%
AAACTCATGGTCATGGGAGA+AGG - chr1_1:35380253-35380272 Msa0020440:CDS 45.0%
TGAGAATTGTAGCCGAGAAG+TGG - chr1_1:35380315-35380334 Msa0020440:CDS 45.0%
! CACATGAAGGGAAGTTTTCC+CGG + chr1_1:35380395-35380414 None:intergenic 45.0%
TTCTAACTGTGGGATCTGCA+TGG + chr1_1:35380465-35380484 None:intergenic 45.0%
! CCATCAACGGTTCTAACTGT+GGG + chr1_1:35380475-35380494 None:intergenic 45.0%
! ACCATCAACGGTTCTAACTG+TGG + chr1_1:35380476-35380495 None:intergenic 45.0%
!! CAAAGGTGTCACACCATCAA+CGG + chr1_1:35380488-35380507 None:intergenic 45.0%
AGATTGGTGTACCTCAACCT+TGG - chr1_1:35380796-35380815 Msa0020440:five_prime_UTR 45.0%
TTTGAGTAGCACCAAGGTTG+AGG + chr1_1:35380810-35380829 None:intergenic 45.0%
!! CAACCTTGGTGCTACTCAAA+TGG - chr1_1:35380810-35380829 Msa0020440:five_prime_UTR 45.0%
CATCCATTTGAGTAGCACCA+AGG + chr1_1:35380816-35380835 None:intergenic 45.0%
!! CTTGGTGCTACTCAAATGGA+TGG - chr1_1:35380814-35380833 Msa0020440:five_prime_UTR 45.0%
!!! TAATATTTTCATTTTATTTA+AGG + chr1_1:35379512-35379531 None:intergenic 5.0%
!! TTAAATAAAATGAAAATATT+AGG - chr1_1:35379511-35379530 Msa0020440:intron 5.0%
!! ATTAACAAATAATTTAATAT+TGG + chr1_1:35379861-35379880 None:intergenic 5.0%
TTGGAAAGTGACGTCGCTGA+AGG + chr1_1:35377732-35377751 None:intergenic 50.0%
ATCGCTGCATCTTAGCAGCA+AGG - chr1_1:35377777-35377796 Msa0020440:CDS 50.0%
AGGATCCTCCTCCTCCTATT+GGG + chr1_1:35377856-35377875 None:intergenic 50.0%
ATGACACCAGGTCGTACTGT+CGG + chr1_1:35377887-35377906 None:intergenic 50.0%
!! AGTACGACCTGGTGTCATTC+CGG - chr1_1:35377889-35377908 Msa0020440:CDS 50.0%
GTCATTCCGGTGAACTCAGT+CGG - chr1_1:35377902-35377921 Msa0020440:CDS 50.0%
ACAGAAACTGCAACAGGAGG+AGG + chr1_1:35377940-35377959 None:intergenic 50.0%
! GGTCTAGGCTCATGTTTCTG+AGG + chr1_1:35377986-35378005 None:intergenic 50.0%
CACCCTCTCTCACCACAATT+AGG + chr1_1:35378007-35378026 None:intergenic 50.0%
! CAAAGTATCTAGCGGCAGCT+AGG + chr1_1:35378075-35378094 None:intergenic 50.0%
CTAGCTGCCGCTAGATACTT+TGG - chr1_1:35378073-35378092 Msa0020440:CDS 50.0%
ACAGCTTGCATTGCTCACTC+AGG - chr1_1:35378102-35378121 Msa0020440:CDS 50.0%
!! TTTTCTGGCAAGCGGAGGAA+GGG - chr1_1:35378262-35378281 Msa0020440:CDS 50.0%
GCAGAAGCAACTAGTGAGCA+TGG - chr1_1:35379913-35379932 Msa0020440:intron 50.0%
ACCAGACTTGGCAACAAGGT+GGG + chr1_1:35380023-35380042 None:intergenic 50.0%
! GCTTGGCTAGGATTTCAGGT+GGG + chr1_1:35380048-35380067 None:intergenic 50.0%
TGCTTGGCTAGGATTTCAGG+TGG + chr1_1:35380049-35380068 None:intergenic 50.0%
AGGTGCTTGGCTAGGATTTC+AGG + chr1_1:35380052-35380071 None:intergenic 50.0%
!! AACGTCAATGGAGAGGTGCT+TGG + chr1_1:35380065-35380084 None:intergenic 50.0%
!! GATGATGATGGTGATGGTGG+TGG + chr1_1:35380153-35380172 None:intergenic 50.0%
!! GGTGATGATGATGGTGATGG+TGG + chr1_1:35380156-35380175 None:intergenic 50.0%
!! CGTGGTGATGATGATGGTGA+TGG + chr1_1:35380159-35380178 None:intergenic 50.0%
CTTCGAAGTCACCAAAGTCG+TGG + chr1_1:35380177-35380196 None:intergenic 50.0%
TTCGACATCCGAGGAGTCAA+GGG + chr1_1:35380227-35380246 None:intergenic 50.0%
TGCTGCGGATGTTAACTACC+CGG - chr1_1:35380360-35380379 Msa0020440:CDS 50.0%
! ATGAAGGGAAGTTTTCCCGG+CGG + chr1_1:35380392-35380411 None:intergenic 50.0%
CGGGAAAACTTCCCTTCATG+TGG - chr1_1:35380393-35380412 Msa0020440:CDS 50.0%
AGCAAAACTGCCACCATCTC+CGG + chr1_1:35380436-35380455 None:intergenic 50.0%
CCCACAGTTAGAACCGTTGA+TGG - chr1_1:35380472-35380491 Msa0020440:CDS 50.0%
!! CGTTGATGGTGTGACACCTT+TGG - chr1_1:35380486-35380505 Msa0020440:CDS 50.0%
!! CTCTTCAAAGGTGCTGTTCC+TGG - chr1_1:35380538-35380557 Msa0020440:CDS 50.0%
GATCATAGCAGCAGTAGCAG+TGG - chr1_1:35380721-35380740 Msa0020440:five_prime_UTR 50.0%
GAAGCCATGAATCGTCGTCA+AGG - chr1_1:35380871-35380890 Msa0020440:five_prime_UTR 50.0%
ACCACCTTGACGACGATTCA+TGG + chr1_1:35380878-35380897 None:intergenic 50.0%
AATCGTCGTCAAGGTGGTCA+TGG - chr1_1:35380880-35380899 Msa0020440:five_prime_UTR 50.0%
! GGCCGTTGATGAGGAGATTC+AGG + chr1_1:35377706-35377725 None:intergenic 55.0%
TGAAGGCTTGGCCGTTGATG+AGG + chr1_1:35377715-35377734 None:intergenic 55.0%
AAGTGACGTCGCTGAAGGCT+TGG + chr1_1:35377727-35377746 None:intergenic 55.0%
TTGGGTCTAGTCCCGAAGGT+GGG + chr1_1:35377838-35377857 None:intergenic 55.0%
ATTGGGTCTAGTCCCGAAGG+TGG + chr1_1:35377839-35377858 None:intergenic 55.0%
CCTATTGGGTCTAGTCCCGA+AGG + chr1_1:35377842-35377861 None:intergenic 55.0%
CCTTCGGGACTAGACCCAAT+AGG - chr1_1:35377839-35377858 Msa0020440:CDS 55.0%
TCGGGACTAGACCCAATAGG+AGG - chr1_1:35377842-35377861 Msa0020440:CDS 55.0%
GGACTAGACCCAATAGGAGG+AGG - chr1_1:35377845-35377864 Msa0020440:CDS 55.0%
CTAGACCCAATAGGAGGAGG+AGG - chr1_1:35377848-35377867 Msa0020440:CDS 55.0%
GAGGATCCTCCTCCTCCTAT+TGG + chr1_1:35377857-35377876 None:intergenic 55.0%
GAGTTCACCGGAATGACACC+AGG + chr1_1:35377899-35377918 None:intergenic 55.0%
TCGTAGCCGACTGAGTTCAC+CGG + chr1_1:35377911-35377930 None:intergenic 55.0%
! ATTGTGGTGAGAGAGGGTGC+TGG - chr1_1:35378008-35378027 Msa0020440:CDS 55.0%
AAGGGCAAGATCAACGGCTG+AGG + chr1_1:35378047-35378066 None:intergenic 55.0%
! AGCGGCAGCTAGGGTATCAA+GGG + chr1_1:35378065-35378084 None:intergenic 55.0%
! TAGCGGCAGCTAGGGTATCA+AGG + chr1_1:35378066-35378085 None:intergenic 55.0%
!! GTTTTCTGGCAAGCGGAGGA+AGG - chr1_1:35378261-35378280 Msa0020440:CDS 55.0%
TCCCACCTTGTTGCCAAGTC+TGG - chr1_1:35380019-35380038 Msa0020440:intron 55.0%
GACCAGACTTGGCAACAAGG+TGG + chr1_1:35380024-35380043 None:intergenic 55.0%
GGAGACCAGACTTGGCAACA+AGG + chr1_1:35380027-35380046 None:intergenic 55.0%
TTCAGGTGGGAGACCAGACT+TGG + chr1_1:35380035-35380054 None:intergenic 55.0%
!! CAATGGAGAGGTGCTTGGCT+AGG + chr1_1:35380060-35380079 None:intergenic 55.0%
TGGCGACAACGTCAATGGAG+AGG + chr1_1:35380072-35380091 None:intergenic 55.0%
CATTAAGGAGCGGCGTGCTA+AGG + chr1_1:35380122-35380141 None:intergenic 55.0%
GGTGGAGTGGCATTAAGGAG+CGG + chr1_1:35380132-35380151 None:intergenic 55.0%
!! GTGGTGGTGGAGTGGCATTA+AGG + chr1_1:35380137-35380156 None:intergenic 55.0%
!! GATGATGGTGATGGTGGTGG+TGG + chr1_1:35380150-35380169 None:intergenic 55.0%
ACCAGAAGATCCGCCGAATG+AGG - chr1_1:35380197-35380216 Msa0020440:intron 55.0%
AGAAGATCCGCCGAATGAGG+CGG - chr1_1:35380200-35380219 Msa0020440:intron 55.0%
GTTCGACATCCGAGGAGTCA+AGG + chr1_1:35380228-35380247 None:intergenic 55.0%
GCAGGGCTTTCACCACTTCT+CGG + chr1_1:35380330-35380349 None:intergenic 55.0%
GTGAAAGCCCTGCTTGAGCT+CGG - chr1_1:35380337-35380356 Msa0020440:CDS 55.0%
! TGAAGGGAAGTTTTCCCGGC+GGG + chr1_1:35380391-35380410 None:intergenic 55.0%
CATCTCGGCAGCCACATGAA+GGG + chr1_1:35380407-35380426 None:intergenic 55.0%
CATCTCCGGAGACACCATCT+CGG + chr1_1:35380422-35380441 None:intergenic 55.0%
GCCATGAATCGTCGTCAAGG+TGG - chr1_1:35380874-35380893 Msa0020440:five_prime_UTR 55.0%
TCTAGTCCCGAAGGTGGGTC+CGG + chr1_1:35377833-35377852 None:intergenic 60.0%
! TCGTACTGTCGGCTGACGAG+AGG + chr1_1:35377876-35377895 None:intergenic 60.0%
GGTGAACTCAGTCGGCTACG+AGG - chr1_1:35377910-35377929 Msa0020440:CDS 60.0%
TGGCAAGCGGAGGAAGGGAA+AGG - chr1_1:35378267-35378286 Msa0020440:CDS 60.0%
GGCAAGCGGAGGAAGGGAAA+GGG - chr1_1:35378268-35378287 Msa0020440:CDS 60.0%
GCGGAGGAAGGGAAAGGGTA+TGG - chr1_1:35378273-35378292 Msa0020440:CDS 60.0%
TAAGGAGCGGCGTGCTAAGG+AGG + chr1_1:35380119-35380138 None:intergenic 60.0%
!! TGGTGATGGTGGTGGTGGAG+TGG + chr1_1:35380145-35380164 None:intergenic 60.0%
GCCTCATTCGGCGGATCTTC+TGG + chr1_1:35380201-35380220 None:intergenic 60.0%
GAAGATCCGCCGAATGAGGC+GGG - chr1_1:35380201-35380220 Msa0020440:intron 60.0%
AGTCAAGGGCCCGCCTCATT+CGG + chr1_1:35380213-35380232 None:intergenic 60.0%
GCGGATGTTAACTACCCGGC+TGG - chr1_1:35380364-35380383 Msa0020440:CDS 60.0%
CCATCTCGGCAGCCACATGA+AGG + chr1_1:35380408-35380427 None:intergenic 60.0%
CCTTCATGTGGCTGCCGAGA+TGG - chr1_1:35380405-35380424 Msa0020440:CDS 60.0%
CGAGATGGTGTCTCCGGAGA+TGG - chr1_1:35380420-35380439 Msa0020440:CDS 60.0%
GATGGTGTCTCCGGAGATGG+TGG - chr1_1:35380423-35380442 Msa0020440:CDS 60.0%
TTGTGGGCCGGACCCACCTT+CGG - chr1_1:35377823-35377842 Msa0020440:CDS 65.0%
CGTCAGCCGACAGTACGACC+TGG - chr1_1:35377878-35377897 Msa0020440:CDS 65.0%
! CGCAGCACCGAGCTCAAGCA+GGG + chr1_1:35380347-35380366 None:intergenic 65.0%
!! CCTGCTTGAGCTCGGTGCTG+CGG - chr1_1:35380345-35380364 Msa0020440:CDS 65.0%
GGCTGCCGAGATGGTGTCTC+CGG - chr1_1:35380414-35380433 Msa0020440:CDS 65.0%
TGTGGGCCGGACCCACCTTC+GGG - chr1_1:35377824-35377843 Msa0020440:CDS 70.0%
CAAGGGCCCGCCTCATTCGG+CGG + chr1_1:35380210-35380229 None:intergenic 70.0%
GAGGCGGGCCCTTGACTCCT+CGG - chr1_1:35380216-35380235 Msa0020440:intron 70.0%
! CCGCAGCACCGAGCTCAAGC+AGG + chr1_1:35380348-35380367 None:intergenic 70.0%
AACTACCCGGCTGGACCCGC+CGG - chr1_1:35380373-35380392 Msa0020440:CDS 70.0%
! TTTTCCCGGCGGGTCCAGCC+GGG + chr1_1:35380381-35380400 None:intergenic 70.0%
! GTTTTCCCGGCGGGTCCAGC+CGG + chr1_1:35380382-35380401 None:intergenic 70.0%
ACTACCCGGCTGGACCCGCC+GGG - chr1_1:35380374-35380393 Msa0020440:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 35377427 35380942 35377427 ID=Msa0020440;Name=Msa0020440
chr1_1 mRNA 35377427 35380942 35377427 ID=Msa0020440-mRNA-1;Parent=Msa0020440;Name=Msa0020440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=235|1|0.5|1|1|1|2|0|495
chr1_1 exon 35377427 35378452 35377427 ID=Msa0020440-mRNA-1:exon:11282;Parent=Msa0020440-mRNA-1
chr1_1 exon 35380246 35380942 35380246 ID=Msa0020440-mRNA-1:exon:11281;Parent=Msa0020440-mRNA-1
chr1_1 five_prime_UTR 35380708 35380942 35380708 ID=Msa0020440-mRNA-1:five_prime_utr;Parent=Msa0020440-mRNA-1
chr1_1 CDS 35380246 35380707 35380246 ID=Msa0020440-mRNA-1:cds;Parent=Msa0020440-mRNA-1
chr1_1 CDS 35377427 35378452 35377427 ID=Msa0020440-mRNA-1:cds;Parent=Msa0020440-mRNA-1
Gene Sequence

>Msa0020440

ATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTGAATCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAAGGTCGTTTGGTTCATGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTTTGTGGGCCGGACCCACCTTCGGGACTAGACCCAATAGGAGGAGGAGGATCCTCTCGTCAGCCGACAGTACGACCTGGTGTCATTCCGGTGAACTCAGTCGGCTACGAGGTGTTCCTCCTCCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGACCTAATTGTGGTGAGAGAGGGTGCTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGATACCCTAGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAAAAAGCAAGAAATGCCCCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCTGGTCTCCCACCTGAAATCCTAGCCAAGCACCTCTCCATTGACGTTGTCGCCAAAATCGAAGACCTTCGTCTAAAATCCTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCATCACCATCATCATCACCACGACTTTGGTGACTTCGAAGACCAGAAGATCCGCCGAATGAGGCGGGCCCTTGACTCCTCGGATGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGTCTAAACCTTGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTTGAGCTCGGTGCTGCGGATGTTAACTACCCGGCTGGACCCGCCGGGAAAACTTCCCTTCATGTGGCTGCCGAGATGGTGTCTCCGGAGATGGTGGCAGTTTTGCTTGATCACCATGCAGATCCCACAGTTAGAACCGTTGATGGTGTGACACCTTTGGATATACTTAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAAACCACATTGAACCAAACAAGTTAAGGTTGTGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTCTGTCACGTGAAGAAAACAATGCTAGTAACAATAATAACAACAACAATAATGCTTCTTCATCAGCAGCACCAATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGTAGCAGTGGCAACAACAACAATAATAACAACAACAACATTGGTAACCTGAATTTGGATTCAAGATTGGTGTACCTCAACCTTGGTGCTACTCAAATGGATGGTGAAGATGATAATCGACACAACAATAGTCATAGAGAAGCCATGAATCGTCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTTCTAA
Protein sequence

>Msa0020440

MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGGSSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASKKQEMPQLWTTCSHLVAKSGLPPEILAKHLSIDVVAKIEDLRLKSSLARRSLMPLHHHHHHHHHHDFGDFEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTSLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLNHIEPNKLRLCLELVQSAALVLSREENNASNNNNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNNNIGNLNLDSRLVYLNLGATQMDGEDDNRHNNSHREAMNRRQGGHGCDPTMYHHSHDF*