Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067970 | XP_013467409.1 | 97.778 | 495 | 8 | 3 | 1 | 495 | 1 | 492 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067970 | sp|A0A072VIM5|NOOT2_MEDTR | 97.778 | 495 | 8 | 3 | 1 | 495 | 1 | 492 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067970 | A0A286R9E6 | 88.554 | 498 | 42 | 6 | 1 | 495 | 1 | 486 | 0.0 | 804 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0067970 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020440 | Msa0067970 | 0.824394 | 8.265449e-54 | -8.615850e-47 |
| Msa0067970 | Msa0113290 | 0.845361 | 4.261264e-59 | -8.615850e-47 |
| Msa0067970 | Msa0159480 | 0.921989 | 1.759797e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067970 | MtrunA17_Chr1g0171771 | 97.778 | 495 | 8 | 3 | 1 | 495 | 1 | 492 | 0.0 | 986 |
| Msa0067970 | MtrunA17_Chr7g0256321 | 77.228 | 505 | 82 | 7 | 1 | 495 | 1 | 482 | 0.0 | 714 |
| Msa0067970 | MtrunA17_Chr5g0442661 | 33.418 | 392 | 217 | 9 | 2 | 386 | 54 | 408 | 6.42e-52 | 185 |
| Msa0067970 | MtrunA17_Chr2g0291741 | 33.333 | 384 | 229 | 9 | 6 | 386 | 44 | 403 | 7.26e-47 | 171 |
| Msa0067970 | MtrunA17_Chr2g0299621 | 30.295 | 373 | 215 | 8 | 24 | 388 | 65 | 400 | 8.68e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0067970 | AT2G41370.1 | 77.800 | 500 | 78 | 8 | 3 | 489 | 4 | 483 | 0.0 | 716 |
| Msa0067970 | AT3G57130.1 | 73.038 | 497 | 85 | 7 | 2 | 494 | 4 | 455 | 0.0 | 692 |
| Msa0067970 | AT3G57130.2 | 74.850 | 167 | 41 | 1 | 2 | 167 | 4 | 170 | 1.18e-84 | 259 |
| Msa0067970 | AT4G19660.1 | 30.334 | 389 | 221 | 8 | 3 | 386 | 42 | 385 | 8.20e-43 | 160 |
| Msa0067970 | AT4G19660.2 | 30.334 | 389 | 221 | 8 | 3 | 386 | 42 | 385 | 1.07e-42 | 160 |
| Msa0067970 | AT5G45110.1 | 30.649 | 385 | 234 | 8 | 6 | 386 | 40 | 395 | 2.92e-40 | 153 |
| Msa0067970 | AT5G45110.2 | 30.649 | 385 | 234 | 8 | 6 | 386 | 40 | 395 | 3.25e-40 | 152 |
| Msa0067970 | AT1G64280.1 | 29.412 | 357 | 220 | 7 | 32 | 386 | 73 | 399 | 4.46e-33 | 132 |
| Msa0067970 | AT4G26120.1 | 30.395 | 329 | 194 | 7 | 33 | 358 | 76 | 372 | 1.19e-32 | 131 |
| Msa0067970 | AT4G26120.2 | 30.395 | 329 | 194 | 7 | 33 | 358 | 77 | 373 | 1.30e-32 | 131 |
Find 163 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATTGGTAACCTGAATT+TGG | 0.137011 | 1_2:+33378233 | Msa0067970:CDS |
| AGGTGCTTGGCTAGGATTTC+AGG | 0.141453 | 1_2:-33377514 | None:intergenic |
| TAGACGAAGGTCTTCGATTT+TGG | 0.166923 | 1_2:-33377554 | None:intergenic |
| AGTTATTATCATATAGTATT+AGG | 0.188496 | 1_2:+33375024 | Msa0067970:five_prime_UTR |
| CTCTTCAAAGGTGCTGTTCC+TGG | 0.194491 | 1_2:+33378003 | Msa0067970:CDS |
| TCACTCATTGGAGGGTAAAT+TGG | 0.270490 | 1_2:-33378162 | None:intergenic |
| GCCTCATTCGGCGGATCTTC+TGG | 0.287511 | 1_2:-33377663 | None:intergenic |
| AAACACAACCTTAACTTGTT+TGG | 0.298334 | 1_2:-33378042 | None:intergenic |
| GGCCGTTGATGAGGAGATTC+AGG | 0.300581 | 1_2:-33375185 | None:intergenic |
| TCCCACCTTGTTGCCAAGTC+TGG | 0.333166 | 1_2:+33377484 | Msa0067970:CDS |
| TGAAGAGAAAATCAGAGGTT+AGG | 0.333207 | 1_2:-33377987 | None:intergenic |
| CTAATCTTGAATCCAAATTC+AGG | 0.335934 | 1_2:-33378245 | None:intergenic |
| TTGTGGGCCGGACCCACCTT+CGG | 0.340434 | 1_2:+33375305 | Msa0067970:CDS |
| ACCACCTTGACGACGATTCA+TGG | 0.340475 | 1_2:-33378340 | None:intergenic |
| GTTATTATCATATAGTATTA+GGG | 0.344825 | 1_2:+33375025 | Msa0067970:five_prime_UTR |
| GAGGATCCTCCTCCTCCTAT+TGG | 0.345044 | 1_2:-33375336 | None:intergenic |
| TGTGGGCCGGACCCACCTTC+GGG | 0.345919 | 1_2:+33375306 | Msa0067970:CDS |
| AAACAAGTTAAGGTTGTGTT+TGG | 0.350359 | 1_2:+33378044 | Msa0067970:CDS |
| AGTCAAGGGCCCGCCTCATT+CGG | 0.384222 | 1_2:-33377675 | None:intergenic |
| TACAATCTATTGAACAGTTT+AGG | 0.384643 | 1_2:-33375053 | None:intergenic |
| AGGATCCTCCTCCTCCTATT+GGG | 0.401164 | 1_2:-33375335 | None:intergenic |
| ATAAGAGATGAGTGAGTGAT+TGG | 0.406057 | 1_2:-33374965 | None:intergenic |
| CAACCTTGGTGCTACTCAAA+TGG | 0.408123 | 1_2:+33378275 | Msa0067970:CDS |
| GGAACATGTTGTCCAAAGTT+GGG | 0.412725 | 1_2:-33377464 | None:intergenic |
| ATGAAATAGTGAAGAGAGGT+TGG | 0.415558 | 1_2:-33374941 | None:intergenic |
| TCAAACACAGTAACAGAAAC+AGG | 0.416094 | 1_2:+33375105 | Msa0067970:five_prime_UTR |
| GGGAACATGTTGTCCAAAGT+TGG | 0.416120 | 1_2:-33377465 | None:intergenic |
| AGCAAGAAATGCCCCAACTT+TGG | 0.416180 | 1_2:+33377452 | Msa0067970:CDS |
| AGCAAAACTGCCACCATCTC+CGG | 0.432155 | 1_2:-33377898 | None:intergenic |
| TTTCCAAGTTGAAGGTCGTT+TGG | 0.433438 | 1_2:+33375227 | Msa0067970:CDS |
| AACTACCCGGCTGGACCCGC+CGG | 0.434820 | 1_2:+33377838 | Msa0067970:CDS |
| GATGATGGTGATGGTGGTGG+TGG | 0.440460 | 1_2:-33377612 | None:intergenic |
| GATGATGATGGTGATGGTGG+TGG | 0.443920 | 1_2:-33377615 | None:intergenic |
| ACATTGAACCAAACAAGTTA+AGG | 0.445023 | 1_2:+33378034 | Msa0067970:CDS |
| CCTTCATGTGGCTGCCGAGA+TGG | 0.445464 | 1_2:+33377870 | Msa0067970:CDS |
| CACCCTCTCTCACCACAATT+AGG | 0.446076 | 1_2:-33375486 | None:intergenic |
| GAAGAGAAAATCAGAGGTTA+GGG | 0.447796 | 1_2:-33377986 | None:intergenic |
| CTGCTATGATCTTCACTCAT+TGG | 0.449669 | 1_2:-33378174 | None:intergenic |
| CGTTGATGGTGTGACACCTT+TGG | 0.451435 | 1_2:+33377951 | Msa0067970:CDS |
| GACGTCACTTTCCAAGTTGA+AGG | 0.452431 | 1_2:+33375219 | Msa0067970:CDS |
| GAGATCTTAGAGTCTCTTCA+AGG | 0.454395 | 1_2:-33375149 | None:intergenic |
| CCCACAGTTAGAACCGTTGA+TGG | 0.458083 | 1_2:+33377937 | Msa0067970:CDS |
| GAGGCGGGCCCTTGACTCCT+CGG | 0.472933 | 1_2:+33377681 | Msa0067970:CDS |
| CACTGTACAGAAACTGCAAC+AGG | 0.473588 | 1_2:-33375425 | None:intergenic |
| GCAGGGCTTTCACCACTTCT+CGG | 0.476184 | 1_2:-33377792 | None:intergenic |
| TCTAGTCCCGAAGGTGGGTC+CGG | 0.476408 | 1_2:-33375312 | None:intergenic |
| GGTTCAATGTGGTTTAATCC+AGG | 0.482214 | 1_2:-33378021 | None:intergenic |
| TTCAGGTGGGAGACCAGACT+TGG | 0.483118 | 1_2:-33377497 | None:intergenic |
| GAACCAAACGACCTTCAACT+TGG | 0.483511 | 1_2:-33375230 | None:intergenic |
| CAAAGTATCTAGCGGCAGCT+AGG | 0.487700 | 1_2:-33375554 | None:intergenic |
| GTGGTGGTGGAGTGGCATTA+AGG | 0.499723 | 1_2:-33377599 | None:intergenic |
| TATGATAATAACTCCTCAAA+AGG | 0.499949 | 1_2:-33375014 | None:intergenic |
| CCGCAGCACCGAGTTCAAGC+AGG | 0.502033 | 1_2:-33377810 | None:intergenic |
| CTAGCTGCCGCTAGATACTT+TGG | 0.502823 | 1_2:+33375555 | Msa0067970:CDS |
| AGTACGACCTGGTGTCATTC+CGG | 0.503385 | 1_2:+33375371 | Msa0067970:CDS |
| CCTTCGGGACTAGACCCAAT+AGG | 0.503671 | 1_2:+33375321 | Msa0067970:CDS |
| CTCTCACCACAATTAGGTCT+AGG | 0.504177 | 1_2:-33375480 | None:intergenic |
| TTTGAGTAGCACCAAGGTTG+AGG | 0.505083 | 1_2:-33378272 | None:intergenic |
| GAAGATCCGCCGAATGAGGC+GGG | 0.506861 | 1_2:+33377666 | Msa0067970:CDS |
| TTTCATCACATCGTCTATTG+AGG | 0.507838 | 1_2:-33377410 | None:intergenic |
| TAGCGGCAGCTAGGGTATCA+AGG | 0.512363 | 1_2:-33375545 | None:intergenic |
| GGCTGCCGAGATGGTGTCTC+CGG | 0.517256 | 1_2:+33377879 | Msa0067970:CDS |
| TGGTGATGGTGGTGGTGGAG+TGG | 0.521989 | 1_2:-33377607 | None:intergenic |
| TGAAATAGTGAAGAGAGGTT+GGG | 0.522658 | 1_2:-33374940 | None:intergenic |
| CTATGATCTTCACTCATTGG+AGG | 0.522815 | 1_2:-33378171 | None:intergenic |
| AATCGTCGTCAAGGTGGTCA+TGG | 0.523469 | 1_2:+33378345 | Msa0067970:CDS |
| CATCATCATCACCACGACTT+TGG | 0.524100 | 1_2:+33377628 | Msa0067970:CDS |
| AACGTCAATGGAGAGGTGCT+TGG | 0.526797 | 1_2:-33377527 | None:intergenic |
| GAGAGTGATGATACATTGTT+GGG | 0.530555 | 1_2:-33378374 | None:intergenic |
| AAACTCATGGTCATGGGAGA+AGG | 0.530916 | 1_2:+33377718 | Msa0067970:CDS |
| AAGTGACGTCGCTGAAGGCT+TGG | 0.531189 | 1_2:-33375206 | None:intergenic |
| CATTAAGGAGCGGCGTGCTA+AGG | 0.535278 | 1_2:-33377584 | None:intergenic |
| GCGGATGTTAACTACCCGGC+TGG | 0.535668 | 1_2:+33377829 | Msa0067970:CDS |
| CGAGATGGTGTCTCCGGAGA+TGG | 0.536869 | 1_2:+33377885 | Msa0067970:CDS |
| ATCTATTGAACAGTTTAGGT+TGG | 0.538377 | 1_2:-33375049 | None:intergenic |
| AAAGTATCTAGCGGCAGCTA+GGG | 0.539768 | 1_2:-33375553 | None:intergenic |
| ACTAGTCAAACTCATGGTCA+TGG | 0.542747 | 1_2:+33377711 | Msa0067970:CDS |
| GTTCGACATCCGAGGAGTCA+AGG | 0.544297 | 1_2:-33377690 | None:intergenic |
| AATAATAACAACAACAACAT+TGG | 0.546735 | 1_2:+33378219 | Msa0067970:CDS |
| TGCTTGGCTAGGATTTCAGG+TGG | 0.547432 | 1_2:-33377511 | None:intergenic |
| CAATGGAGAGGTGCTTGGCT+AGG | 0.548508 | 1_2:-33377522 | None:intergenic |
| TTCGACATCCGAGGAGTCAA+GGG | 0.549310 | 1_2:-33377689 | None:intergenic |
| TTGGAAAGTGACGTCGCTGA+AGG | 0.550213 | 1_2:-33375211 | None:intergenic |
| TGAGAGTGATGATACATTGT+TGG | 0.550269 | 1_2:-33378375 | None:intergenic |
| TCTAAACCTTGATGAAGCAT+TGG | 0.553658 | 1_2:+33377741 | Msa0067970:CDS |
| CTAGACCCAATAGGAGGAGG+AGG | 0.555801 | 1_2:+33375330 | Msa0067970:CDS |
| ACTACCCGGCTGGACCCGCC+GGG | 0.556122 | 1_2:+33377839 | Msa0067970:CDS |
| TGAAGGCTTGGCCGTTGATG+AGG | 0.557454 | 1_2:-33375194 | None:intergenic |
| GTCATTCCGGTGAACTCAGT+CGG | 0.558544 | 1_2:+33375384 | Msa0067970:CDS |
| TGAGGAGATTCAGGTAGTCA+AGG | 0.559086 | 1_2:-33375176 | None:intergenic |
| CCATCTCGGCAGCCACATGA+AGG | 0.559458 | 1_2:-33377870 | None:intergenic |
| ACCAGAAGATCCGCCGAATG+AGG | 0.562667 | 1_2:+33377662 | Msa0067970:CDS |
| CGCAGCACCGAGTTCAAGCA+GGG | 0.563943 | 1_2:-33377809 | None:intergenic |
| GATCATAGCAGCAGTAGCAG+TGG | 0.565707 | 1_2:+33378186 | Msa0067970:CDS |
| CAAGGGCCCGCCTCATTCGG+CGG | 0.566384 | 1_2:-33377672 | None:intergenic |
| GAGGAGATTCAGGTAGTCAA+GGG | 0.566596 | 1_2:-33375175 | None:intergenic |
| CCTGCTTGAACTCGGTGCTG+CGG | 0.566957 | 1_2:+33377810 | Msa0067970:CDS |
| ACAGAAACTGCAACAGGAGG+AGG | 0.567674 | 1_2:-33375419 | None:intergenic |
| ACAGCTTGCATTGCTCACTC+AGG | 0.569799 | 1_2:+33375584 | Msa0067970:CDS |
| TAAGGAGCGGCGTGCTAAGG+AGG | 0.570125 | 1_2:-33377581 | None:intergenic |
| CTGTTGCAGTTTCTGTACAG+TGG | 0.573942 | 1_2:+33375426 | Msa0067970:CDS |
| AGAAGATCCGCCGAATGAGG+CGG | 0.577712 | 1_2:+33377665 | Msa0067970:CDS |
| AGATCTTAGAGTCTCTTCAA+GGG | 0.579610 | 1_2:-33375148 | None:intergenic |
| CTAGTCAAACTCATGGTCAT+GGG | 0.581311 | 1_2:+33377712 | Msa0067970:CDS |
| GATGGTGTCTCCGGAGATGG+TGG | 0.581564 | 1_2:+33377888 | Msa0067970:CDS |
| CGGGAAAACTTCCCTTCATG+TGG | 0.583747 | 1_2:+33377858 | Msa0067970:CDS |
| GGTCTAGGCTCATGTTTCTG+AGG | 0.584293 | 1_2:-33375465 | None:intergenic |
| ATTGGGTCTAGTCCCGAAGG+TGG | 0.584493 | 1_2:-33375318 | None:intergenic |
| GACCTAATTGTGGTGAGAGA+GGG | 0.584783 | 1_2:+33375484 | Msa0067970:CDS |
| AGATTAGTGTACCTCAACCT+TGG | 0.585256 | 1_2:+33378261 | Msa0067970:CDS |
| GGTGATGATGATGGTGATGG+TGG | 0.585530 | 1_2:-33377618 | None:intergenic |
| GTGAAAGCCCTGCTTGAACT+CGG | 0.586127 | 1_2:+33377802 | Msa0067970:CDS |
| ACCATCAACGGTTCTAACTG+TGG | 0.586558 | 1_2:-33377938 | None:intergenic |
| GTAATGCCAATGCTTCATCA+AGG | 0.588210 | 1_2:-33377747 | None:intergenic |
| AAGGGCAAGATCAACGGCTG+AGG | 0.588511 | 1_2:-33375526 | None:intergenic |
| AGACCTAATTGTGGTGAGAG+AGG | 0.589965 | 1_2:+33375483 | Msa0067970:CDS |
| CAAAGGTGTCACACCATCAA+CGG | 0.591793 | 1_2:-33377950 | None:intergenic |
| TGAGAATTGTAGCCGAGAAG+TGG | 0.593437 | 1_2:+33377780 | Msa0067970:CDS |
| CCTATTGGGTCTAGTCCCGA+AGG | 0.597805 | 1_2:-33375321 | None:intergenic |
| GCAGAAGCAACTAGTGAGCA+TGG | 0.601200 | 1_2:+33377378 | Msa0067970:intron |
| CCATCAACGGTTCTAACTGT+GGG | 0.604614 | 1_2:-33377937 | None:intergenic |
| CGTGGTGATGATGATGGTGA+TGG | 0.605066 | 1_2:-33377621 | None:intergenic |
| TATGATCTTCACTCATTGGA+GGG | 0.606499 | 1_2:-33378170 | None:intergenic |
| ACCAGACTTGGCAACAAGGT+GGG | 0.607953 | 1_2:-33377485 | None:intergenic |
| CAAAGTCGTGGTGATGATGA+TGG | 0.608219 | 1_2:-33377627 | None:intergenic |
| GGACTAGACCCAATAGGAGG+AGG | 0.611118 | 1_2:+33375327 | Msa0067970:CDS |
| GAGTTCACCGGAATGACACC+AGG | 0.611897 | 1_2:-33375378 | None:intergenic |
| GGTATCAAGGGCAAGATCAA+CGG | 0.613359 | 1_2:-33375532 | None:intergenic |
| ATCGCTGCATCTTAGCAGCA+AGG | 0.614656 | 1_2:+33375259 | Msa0067970:CDS |
| TTTGACTAGTTCGACATCCG+AGG | 0.618914 | 1_2:-33377698 | None:intergenic |
| ACCTTTGAAGAGAAAATCAG+AGG | 0.620921 | 1_2:-33377992 | None:intergenic |
| TACCTGAATCTCCTCATCAA+CGG | 0.622639 | 1_2:+33375183 | Msa0067970:CDS |
| CTTGGTGCTACTCAAATGGA+TGG | 0.623070 | 1_2:+33378279 | Msa0067970:CDS |
| AGCGGCAGCTAGGGTATCAA+GGG | 0.623566 | 1_2:-33375544 | None:intergenic |
| GAAGCCATGAATCGTCGTCA+AGG | 0.625063 | 1_2:+33378336 | Msa0067970:CDS |
| TTCTAACTGTGGGATCTGCA+TGG | 0.627211 | 1_2:-33377927 | None:intergenic |
| TCGTAGCCGACTGAGTTCAC+CGG | 0.627960 | 1_2:-33375390 | None:intergenic |
| GAACATGTTGTCCAAAGTTG+GGG | 0.630070 | 1_2:-33377463 | None:intergenic |
| TGGCGACAACGTCAATGGAG+AGG | 0.634502 | 1_2:-33377534 | None:intergenic |
| TGTCGAACTAGTCAAACTCA+TGG | 0.636426 | 1_2:+33377705 | Msa0067970:CDS |
| TTGGGTCTAGTCCCGAAGGT+GGG | 0.636525 | 1_2:-33375317 | None:intergenic |
| GGTGGAGTGGCATTAAGGAG+CGG | 0.636797 | 1_2:-33377594 | None:intergenic |
| GGAGACCAGACTTGGCAACA+AGG | 0.637078 | 1_2:-33377489 | None:intergenic |
| TCGTACTGTCGGCTGACGAG+AGG | 0.637585 | 1_2:-33375355 | None:intergenic |
| ATTGTGGTGAGAGAGGGTGC+TGG | 0.639310 | 1_2:+33375490 | Msa0067970:CDS |
| CATCTCCGGAGACACCATCT+CGG | 0.640201 | 1_2:-33377884 | None:intergenic |
| TTAACTTGTTTGGTTCAATG+TGG | 0.642616 | 1_2:-33378032 | None:intergenic |
| CATCTCGGCAGCCACATGAA+GGG | 0.642619 | 1_2:-33377869 | None:intergenic |
| ATGACACCAGGTCGTACTGT+CGG | 0.652727 | 1_2:-33375366 | None:intergenic |
| CATGAGCCTAGACCTAATTG+TGG | 0.655015 | 1_2:+33375474 | Msa0067970:CDS |
| CGTCAGCCGACAGTACGACC+TGG | 0.655540 | 1_2:+33375360 | Msa0067970:CDS |
| CTTCGAAGTCACCAAAGTCG+TGG | 0.659191 | 1_2:-33377639 | None:intergenic |
| GACCAGACTTGGCAACAAGG+TGG | 0.659215 | 1_2:-33377486 | None:intergenic |
| TCGGGACTAGACCCAATAGG+AGG | 0.661393 | 1_2:+33375324 | Msa0067970:CDS |
| TGGAATGAAATAGTGAAGAG+AGG | 0.664765 | 1_2:-33374945 | None:intergenic |
| TGCTGCGGATGTTAACTACC+CGG | 0.669914 | 1_2:+33377825 | Msa0067970:CDS |
| AGGGTTCTAAGTATATCCAA+AGG | 0.671624 | 1_2:-33377967 | None:intergenic |
| TTCAACGCCAAAGTATCTAG+CGG | 0.678772 | 1_2:-33375562 | None:intergenic |
| TGTACAGAAACTGCAACAGG+AGG | 0.681852 | 1_2:-33375422 | None:intergenic |
| GCTTGGCTAGGATTTCAGGT+GGG | 0.683050 | 1_2:-33377510 | None:intergenic |
| CATCCATTTGAGTAGCACCA+AGG | 0.686782 | 1_2:-33378278 | None:intergenic |
| GCCATGAATCGTCGTCAAGG+TGG | 0.689108 | 1_2:+33378339 | Msa0067970:CDS |
| GGTGAACTCAGTCGGCTACG+AGG | 0.709456 | 1_2:+33375392 | Msa0067970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATTTTTTAGTTTTG+TGG | - | chr1_2:33376254-33376273 | None:intergenic | 10.0% |
| !!! | AATTTTTAAAATTACAGTTT+TGG | - | chr1_2:33376283-33376302 | None:intergenic | 10.0% |
| !!! | TAAAAACTAAAAAATGTTTT+TGG | + | chr1_2:33376336-33376355 | Msa0067970:intron | 10.0% |
| !!! | AAAAACTAAAAAATGTTTTT+GGG | + | chr1_2:33376337-33376356 | Msa0067970:intron | 10.0% |
| !! | AGTTATTATCATATAGTATT+AGG | + | chr1_2:33375024-33375043 | Msa0067970:five_prime_UTR | 15.0% |
| !! | GTTATTATCATATAGTATTA+GGG | + | chr1_2:33375025-33375044 | Msa0067970:five_prime_UTR | 15.0% |
| !!! | TTTTAGTCAACTTTTTTTTT+TGG | + | chr1_2:33375835-33375854 | Msa0067970:intron | 15.0% |
| !!! | TTTAGTCAACTTTTTTTTTT+GGG | + | chr1_2:33375836-33375855 | Msa0067970:intron | 15.0% |
| !!! | TTTTATTTTTGAGTCTATAT+AGG | + | chr1_2:33375921-33375940 | Msa0067970:intron | 15.0% |
| !!! | TTTATTTTTGAGTCTATATA+GGG | + | chr1_2:33375922-33375941 | Msa0067970:intron | 15.0% |
| !! | AAAAAACTAAAACATGTAAA+AGG | - | chr1_2:33376228-33376247 | None:intergenic | 15.0% |
| !! | TACATATTAGACTTATAATT+TGG | + | chr1_2:33376379-33376398 | Msa0067970:intron | 15.0% |
| !! | AGAAAAATTGTATTGAAAAA+TGG | - | chr1_2:33376906-33376925 | None:intergenic | 15.0% |
| !!! | ATAAAGATTTTATGTTGTAA+GGG | - | chr1_2:33377236-33377255 | None:intergenic | 15.0% |
| !!! | TATAAAGATTTTATGTTGTA+AGG | - | chr1_2:33377237-33377256 | None:intergenic | 15.0% |
| !!! | TTAGTCAACTTTTTTTTTTG+GGG | + | chr1_2:33375837-33375856 | Msa0067970:intron | 20.0% |
| !! | TATAGAACTACCTAAAATAA+GGG | - | chr1_2:33375870-33375889 | None:intergenic | 20.0% |
| !! | TTATAGAACTACCTAAAATA+AGG | - | chr1_2:33375871-33375890 | None:intergenic | 20.0% |
| !!! | TTTGAAATAGTTTTGGTTTT+CGG | + | chr1_2:33376164-33376183 | Msa0067970:intron | 20.0% |
| !! | AATGCAAAAATGAAATAGAA+GGG | - | chr1_2:33376689-33376708 | None:intergenic | 20.0% |
| !! | AAATGCAAAAATGAAATAGA+AGG | - | chr1_2:33376690-33376709 | None:intergenic | 20.0% |
| !!! | ATAAAGTGATTTGATGATTT+GGG | + | chr1_2:33377003-33377022 | Msa0067970:intron | 20.0% |
| !! | TCATGAATTAAACTTAACAT+TGG | + | chr1_2:33377057-33377076 | Msa0067970:intron | 20.0% |
| !! | TAAAATATGGCAAATGTTAA+GGG | - | chr1_2:33377145-33377164 | None:intergenic | 20.0% |
| !! | TTAAAATATGGCAAATGTTA+AGG | - | chr1_2:33377146-33377165 | None:intergenic | 20.0% |
| !!! | CTCTGTACAAATTTAAAATA+TGG | - | chr1_2:33377158-33377177 | None:intergenic | 20.0% |
| !! | CTATAAAAGATTACTTCAAT+TGG | + | chr1_2:33377268-33377287 | Msa0067970:intron | 20.0% |
| !! | AATAATAACAACAACAACAT+TGG | + | chr1_2:33378219-33378238 | Msa0067970:CDS | 20.0% |
| ! | TATGATAATAACTCCTCAAA+AGG | - | chr1_2:33375017-33375036 | None:intergenic | 25.0% |
| ! | TACAATCTATTGAACAGTTT+AGG | - | chr1_2:33375056-33375075 | None:intergenic | 25.0% |
| ! | ATAGAACTACCTAAAATAAG+GGG | - | chr1_2:33375869-33375888 | None:intergenic | 25.0% |
| ! | TAGTAAGAGTAATGATATGA+GGG | - | chr1_2:33375987-33376006 | None:intergenic | 25.0% |
| ! | ATAGTAAGAGTAATGATATG+AGG | - | chr1_2:33375988-33376007 | None:intergenic | 25.0% |
| ! | GTTGAGGTTATAAAACAAAT+TGG | + | chr1_2:33376073-33376092 | Msa0067970:intron | 25.0% |
| !!! | TGATTTAGTTTGTTCTCTTT+TGG | - | chr1_2:33376588-33376607 | None:intergenic | 25.0% |
| !! | GAAATTGTGAATTTTCTTTG+AGG | - | chr1_2:33376772-33376791 | None:intergenic | 25.0% |
| !! | CATAAAGTGATTTGATGATT+TGG | + | chr1_2:33377002-33377021 | Msa0067970:intron | 25.0% |
| !! | TAAAGTGATTTGATGATTTG+GGG | + | chr1_2:33377004-33377023 | Msa0067970:intron | 25.0% |
| ! | GTTAAGTTTAATTCATGACT+TGG | - | chr1_2:33377055-33377074 | None:intergenic | 25.0% |
| !! | CCTTAAATACACTTTTCTTA+TGG | - | chr1_2:33377193-33377212 | None:intergenic | 25.0% |
| !! | CCATAAGAAAAGTGTATTTA+AGG | + | chr1_2:33377190-33377209 | Msa0067970:intron | 25.0% |
| !! | AAGAAAAGTGTATTTAAGGA+AGG | + | chr1_2:33377194-33377213 | Msa0067970:intron | 25.0% |
| !! | AGAAAAGTGTATTTAAGGAA+GGG | + | chr1_2:33377195-33377214 | Msa0067970:intron | 25.0% |
| ATCTATTGAACAGTTTAGGT+TGG | - | chr1_2:33375052-33375071 | None:intergenic | 30.0% | |
| ! | TTCTTCAGGAAATTCTTTTG+TGG | + | chr1_2:33375288-33375307 | Msa0067970:CDS | 30.0% |
| ! | TCTTCAGGAAATTCTTTTGT+GGG | + | chr1_2:33375289-33375308 | Msa0067970:CDS | 30.0% |
| TTTGAGTCTATATAGGGATT+TGG | + | chr1_2:33375928-33375947 | Msa0067970:intron | 30.0% | |
| AATGATATGAGGGAATTTCT+TGG | - | chr1_2:33375977-33375996 | None:intergenic | 30.0% | |
| AAACATTCAAAACAGACGAT+AGG | + | chr1_2:33376135-33376154 | Msa0067970:intron | 30.0% | |
| AACATTCAAAACAGACGATA+GGG | + | chr1_2:33376136-33376155 | Msa0067970:intron | 30.0% | |
| TGGTACATGAAATCAATGAA+GGG | - | chr1_2:33376415-33376434 | None:intergenic | 30.0% | |
| ATGTATAGAGTTTCTCGAAT+TGG | + | chr1_2:33376436-33376455 | Msa0067970:intron | 30.0% | |
| CACAAAATCTTTCCTAAAGA+TGG | + | chr1_2:33376536-33376555 | Msa0067970:intron | 30.0% | |
| !!! | TTTAGTTTGTTCTCTTTTGG+AGG | - | chr1_2:33376585-33376604 | None:intergenic | 30.0% |
| TGGAAAAAAGTGAGATTTGT+TGG | - | chr1_2:33376717-33376736 | None:intergenic | 30.0% | |
| !! | GAATTTTCTTTGAGGACTTA+TGG | - | chr1_2:33376764-33376783 | None:intergenic | 30.0% |
| ! | AATGTTAAAGAGTACGCTTA+GGG | - | chr1_2:33376952-33376971 | None:intergenic | 30.0% |
| ! | AAATGTTAAAGAGTACGCTT+AGG | - | chr1_2:33376953-33376972 | None:intergenic | 30.0% |
| !! | TTAACTTGTTTGGTTCAATG+TGG | - | chr1_2:33378035-33378054 | None:intergenic | 30.0% |
| ACATTGAACCAAACAAGTTA+AGG | + | chr1_2:33378034-33378053 | Msa0067970:CDS | 30.0% | |
| !! | AAACACAACCTTAACTTGTT+TGG | - | chr1_2:33378045-33378064 | None:intergenic | 30.0% |
| AAACAAGTTAAGGTTGTGTT+TGG | + | chr1_2:33378044-33378063 | Msa0067970:CDS | 30.0% | |
| CTAATCTTGAATCCAAATTC+AGG | - | chr1_2:33378248-33378267 | None:intergenic | 30.0% | |
| TGAAATAGTGAAGAGAGGTT+GGG | - | chr1_2:33374943-33374962 | None:intergenic | 35.0% | |
| ATGAAATAGTGAAGAGAGGT+TGG | - | chr1_2:33374944-33374963 | None:intergenic | 35.0% | |
| TGGAATGAAATAGTGAAGAG+AGG | - | chr1_2:33374948-33374967 | None:intergenic | 35.0% | |
| ATAAGAGATGAGTGAGTGAT+TGG | - | chr1_2:33374968-33374987 | None:intergenic | 35.0% | |
| ! | TCTCTTTTTCTCACCTTTTG+AGG | + | chr1_2:33375001-33375020 | Msa0067970:five_prime_UTR | 35.0% |
| TCAAACACAGTAACAGAAAC+AGG | + | chr1_2:33375105-33375124 | Msa0067970:five_prime_UTR | 35.0% | |
| AGATCTTAGAGTCTCTTCAA+GGG | - | chr1_2:33375151-33375170 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTTGGAATGTGGAA+AGG | + | chr1_2:33375774-33375793 | Msa0067970:intron | 35.0% |
| !!! | TGGTTTTTGGAATGTGGAAA+GGG | + | chr1_2:33375775-33375794 | Msa0067970:intron | 35.0% |
| AACAAGTTCTCACTCTTACT+TGG | + | chr1_2:33376037-33376056 | Msa0067970:intron | 35.0% | |
| ACAAGTTCTCACTCTTACTT+GGG | + | chr1_2:33376038-33376057 | Msa0067970:intron | 35.0% | |
| ACATTCAAAACAGACGATAG+GGG | + | chr1_2:33376137-33376156 | Msa0067970:intron | 35.0% | |
| !! | GGGTCTGTTTGAAATAGTTT+TGG | + | chr1_2:33376157-33376176 | Msa0067970:intron | 35.0% |
| GTGGTACATGAAATCAATGA+AGG | - | chr1_2:33376416-33376435 | None:intergenic | 35.0% | |
| TTCGAGAAACTCTATACATG+TGG | - | chr1_2:33376435-33376454 | None:intergenic | 35.0% | |
| ! | GATTTTGTGTGCTTCATTTG+CGG | - | chr1_2:33376525-33376544 | None:intergenic | 35.0% |
| !! | TCACTTTCCTCATTTGGTTT+TGG | + | chr1_2:33376559-33376578 | Msa0067970:intron | 35.0% |
| AGGGAGAGAAAAAATGTTGA+GGG | - | chr1_2:33376670-33376689 | None:intergenic | 35.0% | |
| AAGGGAGAGAAAAAATGTTG+AGG | - | chr1_2:33376671-33376690 | None:intergenic | 35.0% | |
| !! | TTTTGATAGCACTGGGTTTA+TGG | - | chr1_2:33376737-33376756 | None:intergenic | 35.0% |
| !! | TGGCAAATTTTGATAGCACT+GGG | - | chr1_2:33376744-33376763 | None:intergenic | 35.0% |
| !! | ATGGCAAATTTTGATAGCAC+TGG | - | chr1_2:33376745-33376764 | None:intergenic | 35.0% |
| TTTCATCACATCGTCTATTG+AGG | - | chr1_2:33377413-33377432 | None:intergenic | 35.0% | |
| TCTAAACCTTGATGAAGCAT+TGG | + | chr1_2:33377741-33377760 | Msa0067970:CDS | 35.0% | |
| !! | AGGGTTCTAAGTATATCCAA+AGG | - | chr1_2:33377970-33377989 | None:intergenic | 35.0% |
| GAAGAGAAAATCAGAGGTTA+GGG | - | chr1_2:33377989-33378008 | None:intergenic | 35.0% | |
| TGAAGAGAAAATCAGAGGTT+AGG | - | chr1_2:33377990-33378009 | None:intergenic | 35.0% | |
| ! | ACCTCTGATTTTCTCTTCAA+AGG | + | chr1_2:33377991-33378010 | Msa0067970:CDS | 35.0% |
| ! | ACCTTTGAAGAGAAAATCAG+AGG | - | chr1_2:33377995-33378014 | None:intergenic | 35.0% |
| TATGATCTTCACTCATTGGA+GGG | - | chr1_2:33378173-33378192 | None:intergenic | 35.0% | |
| ! | CAACATTGGTAACCTGAATT+TGG | + | chr1_2:33378233-33378252 | Msa0067970:CDS | 35.0% |
| GAGAGTGATGATACATTGTT+GGG | - | chr1_2:33378377-33378396 | None:intergenic | 35.0% | |
| TGAGAGTGATGATACATTGT+TGG | - | chr1_2:33378378-33378397 | None:intergenic | 35.0% | |
| AAGGTGAGAAAAAGAGAGAG+AGG | - | chr1_2:33374998-33375017 | None:intergenic | 40.0% | |
| GAGATCTTAGAGTCTCTTCA+AGG | - | chr1_2:33375152-33375171 | None:intergenic | 40.0% | |
| TACCTGAATCTCCTCATCAA+CGG | + | chr1_2:33375183-33375202 | Msa0067970:CDS | 40.0% | |
| ! | TTTCCAAGTTGAAGGTCGTT+TGG | + | chr1_2:33375227-33375246 | Msa0067970:CDS | 40.0% |
| ! | TTCAACGCCAAAGTATCTAG+CGG | - | chr1_2:33375565-33375584 | None:intergenic | 40.0% |
| ! | GTGACCAGTCATATGTTTTC+TGG | + | chr1_2:33375729-33375748 | Msa0067970:intron | 40.0% |
| CTTGCCAGAAAACATATGAC+TGG | - | chr1_2:33375736-33375755 | None:intergenic | 40.0% | |
| !! | GTCATATGTTTTCTGGCAAG+CGG | + | chr1_2:33375736-33375755 | Msa0067970:intron | 40.0% |
| !! | AAGGGAAAGGGTATGGTTTT+TGG | + | chr1_2:33375762-33375781 | Msa0067970:intron | 40.0% |
| !!! | AGGGTATGGTTTTTGGAATG+TGG | + | chr1_2:33375769-33375788 | Msa0067970:intron | 40.0% |
| !!! | GGTTTTTGGAATGTGGAAAG+GGG | + | chr1_2:33375776-33375795 | Msa0067970:intron | 40.0% |
| !!! | GGGTTTGTTCCCCTTATTTT+AGG | + | chr1_2:33375857-33375876 | Msa0067970:intron | 40.0% |
| TCATTTGCGGAAGACAAGAT+TGG | - | chr1_2:33376512-33376531 | None:intergenic | 40.0% | |
| TGAGGAAAGTGACCATCTTT+AGG | - | chr1_2:33376551-33376570 | None:intergenic | 40.0% | |
| ! | AGATGGTCACTTTCCTCATT+TGG | + | chr1_2:33376553-33376572 | Msa0067970:intron | 40.0% |
| GGGAGAGAAAAAATGTTGAG+GGG | - | chr1_2:33376669-33376688 | None:intergenic | 40.0% | |
| ! | AGTGATTTGATGATTTGGGG+AGG | + | chr1_2:33377007-33377026 | Msa0067970:intron | 40.0% |
| ! | ATGATTTGGGGAGGAACATA+GGG | + | chr1_2:33377016-33377035 | Msa0067970:intron | 40.0% |
| GAACATGTTGTCCAAAGTTG+GGG | - | chr1_2:33377466-33377485 | None:intergenic | 40.0% | |
| GGAACATGTTGTCCAAAGTT+GGG | - | chr1_2:33377467-33377486 | None:intergenic | 40.0% | |
| ! | TAGACGAAGGTCTTCGATTT+TGG | - | chr1_2:33377557-33377576 | None:intergenic | 40.0% |
| ! | CTAAGGAGGATTTTAGACGA+AGG | - | chr1_2:33377570-33377589 | None:intergenic | 40.0% |
| TGTCGAACTAGTCAAACTCA+TGG | + | chr1_2:33377705-33377724 | Msa0067970:CDS | 40.0% | |
| ACTAGTCAAACTCATGGTCA+TGG | + | chr1_2:33377711-33377730 | Msa0067970:CDS | 40.0% | |
| CTAGTCAAACTCATGGTCAT+GGG | + | chr1_2:33377712-33377731 | Msa0067970:CDS | 40.0% | |
| GTAATGCCAATGCTTCATCA+AGG | - | chr1_2:33377750-33377769 | None:intergenic | 40.0% | |
| GGTTCAATGTGGTTTAATCC+AGG | - | chr1_2:33378024-33378043 | None:intergenic | 40.0% | |
| TCACTCATTGGAGGGTAAAT+TGG | - | chr1_2:33378165-33378184 | None:intergenic | 40.0% | |
| CTATGATCTTCACTCATTGG+AGG | - | chr1_2:33378174-33378193 | None:intergenic | 40.0% | |
| CTGCTATGATCTTCACTCAT+TGG | - | chr1_2:33378177-33378196 | None:intergenic | 40.0% | |
| AGATTAGTGTACCTCAACCT+TGG | + | chr1_2:33378261-33378280 | Msa0067970:CDS | 40.0% | |
| GAGGAGATTCAGGTAGTCAA+GGG | - | chr1_2:33375178-33375197 | None:intergenic | 45.0% | |
| TGAGGAGATTCAGGTAGTCA+AGG | - | chr1_2:33375179-33375198 | None:intergenic | 45.0% | |
| ! | GACGTCACTTTCCAAGTTGA+AGG | + | chr1_2:33375219-33375238 | Msa0067970:CDS | 45.0% |
| GAACCAAACGACCTTCAACT+TGG | - | chr1_2:33375233-33375252 | None:intergenic | 45.0% | |
| ! | CAGCAAGGAGTCTTTTCTTC+AGG | + | chr1_2:33375274-33375293 | Msa0067970:CDS | 45.0% |
| ! | CAGGAAATTCTTTTGTGGGC+CGG | + | chr1_2:33375293-33375312 | Msa0067970:CDS | 45.0% |
| TGTACAGAAACTGCAACAGG+AGG | - | chr1_2:33375425-33375444 | None:intergenic | 45.0% | |
| CACTGTACAGAAACTGCAAC+AGG | - | chr1_2:33375428-33375447 | None:intergenic | 45.0% | |
| CTGTTGCAGTTTCTGTACAG+TGG | + | chr1_2:33375426-33375445 | Msa0067970:CDS | 45.0% | |
| CATGAGCCTAGACCTAATTG+TGG | + | chr1_2:33375474-33375493 | Msa0067970:CDS | 45.0% | |
| CTCTCACCACAATTAGGTCT+AGG | - | chr1_2:33375483-33375502 | None:intergenic | 45.0% | |
| AGACCTAATTGTGGTGAGAG+AGG | + | chr1_2:33375483-33375502 | Msa0067970:CDS | 45.0% | |
| GACCTAATTGTGGTGAGAGA+GGG | + | chr1_2:33375484-33375503 | Msa0067970:CDS | 45.0% | |
| GGTATCAAGGGCAAGATCAA+CGG | - | chr1_2:33375535-33375554 | None:intergenic | 45.0% | |
| ! | AAAGTATCTAGCGGCAGCTA+GGG | - | chr1_2:33375556-33375575 | None:intergenic | 45.0% |
| !! | ATATGTTTTCTGGCAAGCGG+AGG | + | chr1_2:33375739-33375758 | Msa0067970:intron | 45.0% |
| GAGGGAATTTCTTGGAAGAG+AGG | - | chr1_2:33375969-33375988 | None:intergenic | 45.0% | |
| ! | TGGGATTGAGACTTGAGTTG+AGG | + | chr1_2:33376057-33376076 | Msa0067970:intron | 45.0% |
| TTGGAGGCCAAAACCAAATG+AGG | - | chr1_2:33376569-33376588 | None:intergenic | 45.0% | |
| ! | GATGATTTGGGGAGGAACAT+AGG | + | chr1_2:33377015-33377034 | Msa0067970:intron | 45.0% |
| AGCAAGAAATGCCCCAACTT+TGG | + | chr1_2:33377452-33377471 | Msa0067970:CDS | 45.0% | |
| GGGAACATGTTGTCCAAAGT+TGG | - | chr1_2:33377468-33377487 | None:intergenic | 45.0% | |
| !! | GATTTTGGCGACAACGTCAA+TGG | - | chr1_2:33377542-33377561 | None:intergenic | 45.0% |
| ! | CAAAGTCGTGGTGATGATGA+TGG | - | chr1_2:33377630-33377649 | None:intergenic | 45.0% |
| CATCATCATCACCACGACTT+TGG | + | chr1_2:33377628-33377647 | Msa0067970:CDS | 45.0% | |
| ! | TTTGACTAGTTCGACATCCG+AGG | - | chr1_2:33377701-33377720 | None:intergenic | 45.0% |
| AAACTCATGGTCATGGGAGA+AGG | + | chr1_2:33377718-33377737 | Msa0067970:CDS | 45.0% | |
| TGAGAATTGTAGCCGAGAAG+TGG | + | chr1_2:33377780-33377799 | Msa0067970:CDS | 45.0% | |
| ! | CACATGAAGGGAAGTTTTCC+CGG | - | chr1_2:33377860-33377879 | None:intergenic | 45.0% |
| TTCTAACTGTGGGATCTGCA+TGG | - | chr1_2:33377930-33377949 | None:intergenic | 45.0% | |
| ! | CCATCAACGGTTCTAACTGT+GGG | - | chr1_2:33377940-33377959 | None:intergenic | 45.0% |
| ! | ACCATCAACGGTTCTAACTG+TGG | - | chr1_2:33377941-33377960 | None:intergenic | 45.0% |
| !! | CAAAGGTGTCACACCATCAA+CGG | - | chr1_2:33377953-33377972 | None:intergenic | 45.0% |
| TTTGAGTAGCACCAAGGTTG+AGG | - | chr1_2:33378275-33378294 | None:intergenic | 45.0% | |
| !! | CAACCTTGGTGCTACTCAAA+TGG | + | chr1_2:33378275-33378294 | Msa0067970:CDS | 45.0% |
| CATCCATTTGAGTAGCACCA+AGG | - | chr1_2:33378281-33378300 | None:intergenic | 45.0% | |
| !! | CTTGGTGCTACTCAAATGGA+TGG | + | chr1_2:33378279-33378298 | Msa0067970:CDS | 45.0% |
| !!! | TAATATTTTCATTTTATTTA+AGG | - | chr1_2:33376977-33376996 | None:intergenic | 5.0% |
| !! | TTAAATAAAATGAAAATATT+AGG | + | chr1_2:33376976-33376995 | Msa0067970:intron | 5.0% |
| !! | ATTAACAAATAATTTAATAT+TGG | - | chr1_2:33377326-33377345 | None:intergenic | 5.0% |
| TTGGAAAGTGACGTCGCTGA+AGG | - | chr1_2:33375214-33375233 | None:intergenic | 50.0% | |
| ATCGCTGCATCTTAGCAGCA+AGG | + | chr1_2:33375259-33375278 | Msa0067970:CDS | 50.0% | |
| AGGATCCTCCTCCTCCTATT+GGG | - | chr1_2:33375338-33375357 | None:intergenic | 50.0% | |
| ATGACACCAGGTCGTACTGT+CGG | - | chr1_2:33375369-33375388 | None:intergenic | 50.0% | |
| !! | AGTACGACCTGGTGTCATTC+CGG | + | chr1_2:33375371-33375390 | Msa0067970:CDS | 50.0% |
| GTCATTCCGGTGAACTCAGT+CGG | + | chr1_2:33375384-33375403 | Msa0067970:CDS | 50.0% | |
| ACAGAAACTGCAACAGGAGG+AGG | - | chr1_2:33375422-33375441 | None:intergenic | 50.0% | |
| ! | GGTCTAGGCTCATGTTTCTG+AGG | - | chr1_2:33375468-33375487 | None:intergenic | 50.0% |
| CACCCTCTCTCACCACAATT+AGG | - | chr1_2:33375489-33375508 | None:intergenic | 50.0% | |
| ! | CAAAGTATCTAGCGGCAGCT+AGG | - | chr1_2:33375557-33375576 | None:intergenic | 50.0% |
| CTAGCTGCCGCTAGATACTT+TGG | + | chr1_2:33375555-33375574 | Msa0067970:CDS | 50.0% | |
| ACAGCTTGCATTGCTCACTC+AGG | + | chr1_2:33375584-33375603 | Msa0067970:CDS | 50.0% | |
| !! | TTTTCTGGCAAGCGGAGGAA+GGG | + | chr1_2:33375744-33375763 | Msa0067970:intron | 50.0% |
| GCAGAAGCAACTAGTGAGCA+TGG | + | chr1_2:33377378-33377397 | Msa0067970:intron | 50.0% | |
| ACCAGACTTGGCAACAAGGT+GGG | - | chr1_2:33377488-33377507 | None:intergenic | 50.0% | |
| ! | GCTTGGCTAGGATTTCAGGT+GGG | - | chr1_2:33377513-33377532 | None:intergenic | 50.0% |
| TGCTTGGCTAGGATTTCAGG+TGG | - | chr1_2:33377514-33377533 | None:intergenic | 50.0% | |
| AGGTGCTTGGCTAGGATTTC+AGG | - | chr1_2:33377517-33377536 | None:intergenic | 50.0% | |
| !! | AACGTCAATGGAGAGGTGCT+TGG | - | chr1_2:33377530-33377549 | None:intergenic | 50.0% |
| !! | GATGATGATGGTGATGGTGG+TGG | - | chr1_2:33377618-33377637 | None:intergenic | 50.0% |
| !! | GGTGATGATGATGGTGATGG+TGG | - | chr1_2:33377621-33377640 | None:intergenic | 50.0% |
| !! | CGTGGTGATGATGATGGTGA+TGG | - | chr1_2:33377624-33377643 | None:intergenic | 50.0% |
| CTTCGAAGTCACCAAAGTCG+TGG | - | chr1_2:33377642-33377661 | None:intergenic | 50.0% | |
| TTCGACATCCGAGGAGTCAA+GGG | - | chr1_2:33377692-33377711 | None:intergenic | 50.0% | |
| GTGAAAGCCCTGCTTGAACT+CGG | + | chr1_2:33377802-33377821 | Msa0067970:CDS | 50.0% | |
| TGCTGCGGATGTTAACTACC+CGG | + | chr1_2:33377825-33377844 | Msa0067970:CDS | 50.0% | |
| ! | ATGAAGGGAAGTTTTCCCGG+CGG | - | chr1_2:33377857-33377876 | None:intergenic | 50.0% |
| CGGGAAAACTTCCCTTCATG+TGG | + | chr1_2:33377858-33377877 | Msa0067970:CDS | 50.0% | |
| AGCAAAACTGCCACCATCTC+CGG | - | chr1_2:33377901-33377920 | None:intergenic | 50.0% | |
| CCCACAGTTAGAACCGTTGA+TGG | + | chr1_2:33377937-33377956 | Msa0067970:CDS | 50.0% | |
| !! | CGTTGATGGTGTGACACCTT+TGG | + | chr1_2:33377951-33377970 | Msa0067970:CDS | 50.0% |
| !! | CTCTTCAAAGGTGCTGTTCC+TGG | + | chr1_2:33378003-33378022 | Msa0067970:CDS | 50.0% |
| GATCATAGCAGCAGTAGCAG+TGG | + | chr1_2:33378186-33378205 | Msa0067970:CDS | 50.0% | |
| GAAGCCATGAATCGTCGTCA+AGG | + | chr1_2:33378336-33378355 | Msa0067970:CDS | 50.0% | |
| ACCACCTTGACGACGATTCA+TGG | - | chr1_2:33378343-33378362 | None:intergenic | 50.0% | |
| AATCGTCGTCAAGGTGGTCA+TGG | + | chr1_2:33378345-33378364 | Msa0067970:CDS | 50.0% | |
| ! | GGCCGTTGATGAGGAGATTC+AGG | - | chr1_2:33375188-33375207 | None:intergenic | 55.0% |
| TGAAGGCTTGGCCGTTGATG+AGG | - | chr1_2:33375197-33375216 | None:intergenic | 55.0% | |
| AAGTGACGTCGCTGAAGGCT+TGG | - | chr1_2:33375209-33375228 | None:intergenic | 55.0% | |
| TTGGGTCTAGTCCCGAAGGT+GGG | - | chr1_2:33375320-33375339 | None:intergenic | 55.0% | |
| ATTGGGTCTAGTCCCGAAGG+TGG | - | chr1_2:33375321-33375340 | None:intergenic | 55.0% | |
| CCTATTGGGTCTAGTCCCGA+AGG | - | chr1_2:33375324-33375343 | None:intergenic | 55.0% | |
| CCTTCGGGACTAGACCCAAT+AGG | + | chr1_2:33375321-33375340 | Msa0067970:CDS | 55.0% | |
| TCGGGACTAGACCCAATAGG+AGG | + | chr1_2:33375324-33375343 | Msa0067970:CDS | 55.0% | |
| GGACTAGACCCAATAGGAGG+AGG | + | chr1_2:33375327-33375346 | Msa0067970:CDS | 55.0% | |
| CTAGACCCAATAGGAGGAGG+AGG | + | chr1_2:33375330-33375349 | Msa0067970:CDS | 55.0% | |
| GAGGATCCTCCTCCTCCTAT+TGG | - | chr1_2:33375339-33375358 | None:intergenic | 55.0% | |
| GAGTTCACCGGAATGACACC+AGG | - | chr1_2:33375381-33375400 | None:intergenic | 55.0% | |
| TCGTAGCCGACTGAGTTCAC+CGG | - | chr1_2:33375393-33375412 | None:intergenic | 55.0% | |
| ! | ATTGTGGTGAGAGAGGGTGC+TGG | + | chr1_2:33375490-33375509 | Msa0067970:CDS | 55.0% |
| AAGGGCAAGATCAACGGCTG+AGG | - | chr1_2:33375529-33375548 | None:intergenic | 55.0% | |
| ! | AGCGGCAGCTAGGGTATCAA+GGG | - | chr1_2:33375547-33375566 | None:intergenic | 55.0% |
| ! | TAGCGGCAGCTAGGGTATCA+AGG | - | chr1_2:33375548-33375567 | None:intergenic | 55.0% |
| !! | GTTTTCTGGCAAGCGGAGGA+AGG | + | chr1_2:33375743-33375762 | Msa0067970:intron | 55.0% |
| TCCCACCTTGTTGCCAAGTC+TGG | + | chr1_2:33377484-33377503 | Msa0067970:CDS | 55.0% | |
| GACCAGACTTGGCAACAAGG+TGG | - | chr1_2:33377489-33377508 | None:intergenic | 55.0% | |
| GGAGACCAGACTTGGCAACA+AGG | - | chr1_2:33377492-33377511 | None:intergenic | 55.0% | |
| TTCAGGTGGGAGACCAGACT+TGG | - | chr1_2:33377500-33377519 | None:intergenic | 55.0% | |
| !! | CAATGGAGAGGTGCTTGGCT+AGG | - | chr1_2:33377525-33377544 | None:intergenic | 55.0% |
| TGGCGACAACGTCAATGGAG+AGG | - | chr1_2:33377537-33377556 | None:intergenic | 55.0% | |
| CATTAAGGAGCGGCGTGCTA+AGG | - | chr1_2:33377587-33377606 | None:intergenic | 55.0% | |
| GGTGGAGTGGCATTAAGGAG+CGG | - | chr1_2:33377597-33377616 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAGTGGCATTA+AGG | - | chr1_2:33377602-33377621 | None:intergenic | 55.0% |
| !! | GATGATGGTGATGGTGGTGG+TGG | - | chr1_2:33377615-33377634 | None:intergenic | 55.0% |
| ACCAGAAGATCCGCCGAATG+AGG | + | chr1_2:33377662-33377681 | Msa0067970:CDS | 55.0% | |
| AGAAGATCCGCCGAATGAGG+CGG | + | chr1_2:33377665-33377684 | Msa0067970:CDS | 55.0% | |
| GTTCGACATCCGAGGAGTCA+AGG | - | chr1_2:33377693-33377712 | None:intergenic | 55.0% | |
| GCAGGGCTTTCACCACTTCT+CGG | - | chr1_2:33377795-33377814 | None:intergenic | 55.0% | |
| ! | TGAAGGGAAGTTTTCCCGGC+GGG | - | chr1_2:33377856-33377875 | None:intergenic | 55.0% |
| CATCTCGGCAGCCACATGAA+GGG | - | chr1_2:33377872-33377891 | None:intergenic | 55.0% | |
| CATCTCCGGAGACACCATCT+CGG | - | chr1_2:33377887-33377906 | None:intergenic | 55.0% | |
| GCCATGAATCGTCGTCAAGG+TGG | + | chr1_2:33378339-33378358 | Msa0067970:CDS | 55.0% | |
| TCTAGTCCCGAAGGTGGGTC+CGG | - | chr1_2:33375315-33375334 | None:intergenic | 60.0% | |
| ! | TCGTACTGTCGGCTGACGAG+AGG | - | chr1_2:33375358-33375377 | None:intergenic | 60.0% |
| GGTGAACTCAGTCGGCTACG+AGG | + | chr1_2:33375392-33375411 | Msa0067970:CDS | 60.0% | |
| TGGCAAGCGGAGGAAGGGAA+AGG | + | chr1_2:33375749-33375768 | Msa0067970:intron | 60.0% | |
| GGCAAGCGGAGGAAGGGAAA+GGG | + | chr1_2:33375750-33375769 | Msa0067970:intron | 60.0% | |
| GCGGAGGAAGGGAAAGGGTA+TGG | + | chr1_2:33375755-33375774 | Msa0067970:intron | 60.0% | |
| TAAGGAGCGGCGTGCTAAGG+AGG | - | chr1_2:33377584-33377603 | None:intergenic | 60.0% | |
| !! | TGGTGATGGTGGTGGTGGAG+TGG | - | chr1_2:33377610-33377629 | None:intergenic | 60.0% |
| GCCTCATTCGGCGGATCTTC+TGG | - | chr1_2:33377666-33377685 | None:intergenic | 60.0% | |
| GAAGATCCGCCGAATGAGGC+GGG | + | chr1_2:33377666-33377685 | Msa0067970:CDS | 60.0% | |
| AGTCAAGGGCCCGCCTCATT+CGG | - | chr1_2:33377678-33377697 | None:intergenic | 60.0% | |
| ! | CGCAGCACCGAGTTCAAGCA+GGG | - | chr1_2:33377812-33377831 | None:intergenic | 60.0% |
| !! | CCTGCTTGAACTCGGTGCTG+CGG | + | chr1_2:33377810-33377829 | Msa0067970:CDS | 60.0% |
| GCGGATGTTAACTACCCGGC+TGG | + | chr1_2:33377829-33377848 | Msa0067970:CDS | 60.0% | |
| CCATCTCGGCAGCCACATGA+AGG | - | chr1_2:33377873-33377892 | None:intergenic | 60.0% | |
| CCTTCATGTGGCTGCCGAGA+TGG | + | chr1_2:33377870-33377889 | Msa0067970:CDS | 60.0% | |
| CGAGATGGTGTCTCCGGAGA+TGG | + | chr1_2:33377885-33377904 | Msa0067970:CDS | 60.0% | |
| GATGGTGTCTCCGGAGATGG+TGG | + | chr1_2:33377888-33377907 | Msa0067970:CDS | 60.0% | |
| TTGTGGGCCGGACCCACCTT+CGG | + | chr1_2:33375305-33375324 | Msa0067970:CDS | 65.0% | |
| CGTCAGCCGACAGTACGACC+TGG | + | chr1_2:33375360-33375379 | Msa0067970:CDS | 65.0% | |
| ! | CCGCAGCACCGAGTTCAAGC+AGG | - | chr1_2:33377813-33377832 | None:intergenic | 65.0% |
| GGCTGCCGAGATGGTGTCTC+CGG | + | chr1_2:33377879-33377898 | Msa0067970:CDS | 65.0% | |
| TGTGGGCCGGACCCACCTTC+GGG | + | chr1_2:33375306-33375325 | Msa0067970:CDS | 70.0% | |
| CAAGGGCCCGCCTCATTCGG+CGG | - | chr1_2:33377675-33377694 | None:intergenic | 70.0% | |
| GAGGCGGGCCCTTGACTCCT+CGG | + | chr1_2:33377681-33377700 | Msa0067970:CDS | 70.0% | |
| AACTACCCGGCTGGACCCGC+CGG | + | chr1_2:33377838-33377857 | Msa0067970:CDS | 70.0% | |
| ! | TTTTCCCGGCGGGTCCAGCC+GGG | - | chr1_2:33377846-33377865 | None:intergenic | 70.0% |
| ! | GTTTTCCCGGCGGGTCCAGC+CGG | - | chr1_2:33377847-33377866 | None:intergenic | 70.0% |
| ACTACCCGGCTGGACCCGCC+GGG | + | chr1_2:33377839-33377858 | Msa0067970:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 33374909 | 33378407 | 33374909 | ID=Msa0067970;Name=Msa0067970 |
| chr1_2 | mRNA | 33374909 | 33378407 | 33374909 | ID=Msa0067970-mRNA-1;Parent=Msa0067970;Name=Msa0067970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=235|1|0.5|1|1|1|2|0|495 |
| chr1_2 | exon | 33374909 | 33375605 | 33374909 | ID=Msa0067970-mRNA-1:exon:10957;Parent=Msa0067970-mRNA-1 |
| chr1_2 | exon | 33377382 | 33378407 | 33377382 | ID=Msa0067970-mRNA-1:exon:10958;Parent=Msa0067970-mRNA-1 |
| chr1_2 | five_prime_UTR | 33374909 | 33375143 | 33374909 | ID=Msa0067970-mRNA-1:five_prime_utr;Parent=Msa0067970-mRNA-1 |
| chr1_2 | CDS | 33375144 | 33375605 | 33375144 | ID=Msa0067970-mRNA-1:cds;Parent=Msa0067970-mRNA-1 |
| chr1_2 | CDS | 33377382 | 33378407 | 33377382 | ID=Msa0067970-mRNA-1:cds;Parent=Msa0067970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
