AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159480 MtrunA17_Chr1g0171771 97.773 494 9 2 1 494 1 492 0.0 988
Msa0159480 MtrunA17_Chr7g0256321 76.984 504 84 7 1 494 1 482 0.0 712
Msa0159480 MtrunA17_Chr5g0442661 32.741 394 217 8 2 386 54 408 1.36e-51 184
Msa0159480 MtrunA17_Chr2g0291741 33.077 390 222 9 6 386 44 403 9.23e-47 171
Msa0159480 MtrunA17_Chr2g0299621 30.563 373 214 9 24 388 65 400 1.53e-34 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159480 AT2G41370.1 77.956 499 78 8 3 488 4 483 0.0 715
Msa0159480 AT3G57130.1 72.581 496 88 7 2 493 4 455 0.0 692
Msa0159480 AT3G57130.2 74.850 167 41 1 2 167 4 170 1.21e-84 259
Msa0159480 AT4G19660.1 30.256 390 222 8 2 386 41 385 8.98e-43 160
Msa0159480 AT4G19660.2 30.334 389 221 8 3 386 42 385 1.05e-42 160
Msa0159480 AT5G45110.1 30.649 385 234 8 6 386 40 395 5.66e-40 152
Msa0159480 AT5G45110.2 30.649 385 234 8 6 386 40 395 1.04e-39 150
Msa0159480 AT1G64280.1 29.132 357 221 7 32 386 73 399 5.42e-33 132
Msa0159480 AT4G26120.2 31.420 331 188 8 33 358 77 373 7.04e-33 132
Msa0159480 AT4G26120.1 31.420 331 188 8 33 358 76 372 7.77e-33 132

Find 163 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTGGTAACCTGAATT+TGG 0.137011 1_4:-29967111 Msa0159480:CDS
AGGTGCTTGGCTAGGATTTC+AGG 0.141453 1_4:+29967827 None:intergenic
TAGACGAAGGTCTTCGATTT+TGG 0.166923 1_4:+29967787 None:intergenic
AGTTATTATCATATAGTATT+AGG 0.188496 1_4:-29970312 Msa0159480:five_prime_UTR
CTCTTCAAAGGTGCTGTTCC+TGG 0.194491 1_4:-29967338 Msa0159480:CDS
TCACTCATTGGAGGGTAAAT+TGG 0.270490 1_4:+29967179 None:intergenic
GCCTCATTCGGCGGATCTTC+TGG 0.287511 1_4:+29967678 None:intergenic
AAACACAACCTTAACTTGTT+TGG 0.298334 1_4:+29967299 None:intergenic
GGCCGTTGATGAGGAGATTC+AGG 0.300581 1_4:+29970151 None:intergenic
TCCCACCTTGTTGCCAAGTC+TGG 0.333166 1_4:-29967857 Msa0159480:CDS
TGAAGAGAAAATCAGAGGTT+AGG 0.333207 1_4:+29967354 None:intergenic
CTAATCTTGAATCCAAATTC+AGG 0.335934 1_4:+29967099 None:intergenic
TTGTGGGCCGGACCCACCTT+CGG 0.340434 1_4:-29970031 Msa0159480:CDS
ACCACCTTGACGACGATTCA+TGG 0.340475 1_4:+29967004 None:intergenic
GTTATTATCATATAGTATTA+GGG 0.344825 1_4:-29970311 Msa0159480:five_prime_UTR
GAGGATCCTCCTCCTCCTAT+TGG 0.345044 1_4:+29970000 None:intergenic
TGTGGGCCGGACCCACCTTC+GGG 0.345919 1_4:-29970030 Msa0159480:CDS
AAACAAGTTAAGGTTGTGTT+TGG 0.350359 1_4:-29967297 Msa0159480:CDS
AGTCAAGGGCCCGCCTCATT+CGG 0.384222 1_4:+29967666 None:intergenic
TACAATCTATTGAACAGTTT+AGG 0.384643 1_4:+29970283 None:intergenic
AGGATCCTCCTCCTCCTATT+GGG 0.401164 1_4:+29970001 None:intergenic
ATAAGAGATGAGTGAGTGAT+TGG 0.406057 1_4:+29970371 None:intergenic
CAACCTTGGTGCTACTCAAA+TGG 0.408123 1_4:-29967069 Msa0159480:CDS
GGAACATGTTGTCCAAAGTT+GGG 0.412725 1_4:+29967877 None:intergenic
ATGAAATAGTGAAGAGAGGT+TGG 0.415558 1_4:+29970395 None:intergenic
TCAAACACAGTAACAGAAAC+AGG 0.416094 1_4:-29970231 Msa0159480:five_prime_UTR
GGGAACATGTTGTCCAAAGT+TGG 0.416120 1_4:+29967876 None:intergenic
AGCAAGAAATGCCCCAACTT+TGG 0.416180 1_4:-29967889 Msa0159480:CDS
AGCAAAACTGCCACCATCTC+CGG 0.432155 1_4:+29967443 None:intergenic
TTTCCAAGTTGAAGGTCGTT+TGG 0.433438 1_4:-29970109 Msa0159480:CDS
AACTACCCGGCTGGACCCGC+CGG 0.434820 1_4:-29967503 Msa0159480:CDS
ACATTGAACCAAACAAGTTA+AGG 0.445023 1_4:-29967307 Msa0159480:CDS
CCTTCATGTGGCTGCCGAGA+TGG 0.445464 1_4:-29967471 Msa0159480:CDS
CACCCTCTCTCACCACAATT+AGG 0.446076 1_4:+29969850 None:intergenic
GATGAAGATGGTGATGGTGG+TGG 0.446585 1_4:+29967726 None:intergenic
GAAGAGAAAATCAGAGGTTA+GGG 0.447796 1_4:+29967355 None:intergenic
CTGCTATGATCTTCACTCAT+TGG 0.449669 1_4:+29967167 None:intergenic
CGTTGATGGTGTGACACCTT+TGG 0.451435 1_4:-29967390 Msa0159480:CDS
GACGTCACTTTCCAAGTTGA+AGG 0.452431 1_4:-29970117 Msa0159480:CDS
GAGATCTTAGAGTCTCTTCA+AGG 0.454395 1_4:+29970187 None:intergenic
CCCACAGTTAGAACCGTTGA+TGG 0.458083 1_4:-29967404 Msa0159480:CDS
GAGGCGGGCCCTTGACTCCT+CGG 0.472933 1_4:-29967660 Msa0159480:CDS
CACTGTACAGAAACTGCAAC+AGG 0.473588 1_4:+29969911 None:intergenic
CATCTTCATCACCACGACTT+TGG 0.475497 1_4:-29967713 Msa0159480:CDS
GAAGATGGTGATGGTGGTGG+TGG 0.475972 1_4:+29967729 None:intergenic
GCAGGGCTTTCACCACTTCT+CGG 0.476184 1_4:+29967549 None:intergenic
TCTAGTCCCGAAGGTGGGTC+CGG 0.476408 1_4:+29970024 None:intergenic
GGTTCAATGTGGTTTAATCC+AGG 0.482214 1_4:+29967320 None:intergenic
TTCAGGTGGGAGACCAGACT+TGG 0.483118 1_4:+29967844 None:intergenic
GAACCAAACGACCTTCAACT+TGG 0.483511 1_4:+29970106 None:intergenic
CAAAGTATCTAGCGGCAGCT+AGG 0.487700 1_4:+29969782 None:intergenic
GTGGTGGTGGAGTGGCATTA+AGG 0.499723 1_4:+29967742 None:intergenic
TATGATAATAACTCCTCAAA+AGG 0.499949 1_4:+29970322 None:intergenic
CCGCAGCACCGAGTTCAAGC+AGG 0.502033 1_4:+29967531 None:intergenic
CTAGCTGCCGCTAGATACTT+TGG 0.502823 1_4:-29969781 Msa0159480:CDS
AGTACGACCTGGTGTCATTC+CGG 0.503385 1_4:-29969965 Msa0159480:CDS
CCTTCGGGACTAGACCCAAT+AGG 0.503671 1_4:-29970015 Msa0159480:CDS
CTCTCACCACAATTAGGTCT+AGG 0.504177 1_4:+29969856 None:intergenic
TTTGAGTAGCACCAAGGTTG+AGG 0.505083 1_4:+29967072 None:intergenic
GAAGATCCGCCGAATGAGGC+GGG 0.506861 1_4:-29967675 Msa0159480:CDS
TTTCATCACATCGTCTATTG+AGG 0.507838 1_4:+29967931 None:intergenic
TAGCGGCAGCTAGGGTATCA+AGG 0.512363 1_4:+29969791 None:intergenic
GGCTGCCGAGATGGTGTCTC+CGG 0.517256 1_4:-29967462 Msa0159480:CDS
TGAAATAGTGAAGAGAGGTT+GGG 0.522658 1_4:+29970396 None:intergenic
CTATGATCTTCACTCATTGG+AGG 0.522815 1_4:+29967170 None:intergenic
AATCGTCGTCAAGGTGGTCA+TGG 0.523469 1_4:-29966999 Msa0159480:CDS
AACGTCAATGGAGAGGTGCT+TGG 0.526797 1_4:+29967814 None:intergenic
AACAATAATAACAACAACAT+TGG 0.526906 1_4:-29967125 Msa0159480:CDS
AAACTCATGGTCATGGGAGA+AGG 0.530916 1_4:-29967623 Msa0159480:CDS
AAGTGACGTCGCTGAAGGCT+TGG 0.531189 1_4:+29970130 None:intergenic
CATTAAGGAGCGGCGTGCTA+AGG 0.535278 1_4:+29967757 None:intergenic
GCGGATGTTAACTACCCGGC+TGG 0.535668 1_4:-29967512 Msa0159480:CDS
CGAGATGGTGTCTCCGGAGA+TGG 0.536869 1_4:-29967456 Msa0159480:CDS
ATCTATTGAACAGTTTAGGT+TGG 0.538377 1_4:+29970287 None:intergenic
AAAGTATCTAGCGGCAGCTA+GGG 0.539768 1_4:+29969783 None:intergenic
ACTAGTCAAACTCATGGTCA+TGG 0.542747 1_4:-29967630 Msa0159480:CDS
GTTCGACATCCGAGGAGTCA+AGG 0.544297 1_4:+29967651 None:intergenic
TGAGAGTGATGATACATTGT+TGG 0.545718 1_4:+29966969 None:intergenic
TGCTTGGCTAGGATTTCAGG+TGG 0.547432 1_4:+29967830 None:intergenic
CAATGGAGAGGTGCTTGGCT+AGG 0.548508 1_4:+29967819 None:intergenic
TTCGACATCCGAGGAGTCAA+GGG 0.549310 1_4:+29967652 None:intergenic
TTGGAAAGTGACGTCGCTGA+AGG 0.550213 1_4:+29970125 None:intergenic
GAGAGTGATGATACATTGTT+GGG 0.552293 1_4:+29966970 None:intergenic
TCTAAACCTTGATGAAGCAT+TGG 0.553658 1_4:-29967600 Msa0159480:CDS
CTAGACCCAATAGGAGGAGG+AGG 0.555801 1_4:-29970006 Msa0159480:CDS
ACTACCCGGCTGGACCCGCC+GGG 0.556122 1_4:-29967502 Msa0159480:CDS
TGGTGATGGTGGTGGTGGAG+TGG 0.556672 1_4:+29967734 None:intergenic
TGAAGGCTTGGCCGTTGATG+AGG 0.557454 1_4:+29970142 None:intergenic
GTCATTCCGGTGAACTCAGT+CGG 0.558544 1_4:-29969952 Msa0159480:CDS
TGAGGAGATTCAGGTAGTCA+AGG 0.559086 1_4:+29970160 None:intergenic
CCATCTCGGCAGCCACATGA+AGG 0.559458 1_4:+29967471 None:intergenic
ACCAGAAGATCCGCCGAATG+AGG 0.562667 1_4:-29967679 Msa0159480:CDS
CGCAGCACCGAGTTCAAGCA+GGG 0.563943 1_4:+29967532 None:intergenic
GATCATAGCAGCAGTAGCAG+TGG 0.565707 1_4:-29967155 Msa0159480:CDS
CAAGGGCCCGCCTCATTCGG+CGG 0.566384 1_4:+29967669 None:intergenic
GAGGAGATTCAGGTAGTCAA+GGG 0.566596 1_4:+29970161 None:intergenic
CCTGCTTGAACTCGGTGCTG+CGG 0.566957 1_4:-29967531 Msa0159480:CDS
ACAGAAACTGCAACAGGAGG+AGG 0.567674 1_4:+29969917 None:intergenic
ACAGCTTGCATTGCTCACTC+AGG 0.569799 1_4:-29969752 Msa0159480:intron
TAAGGAGCGGCGTGCTAAGG+AGG 0.570125 1_4:+29967760 None:intergenic
CTGTTGCAGTTTCTGTACAG+TGG 0.573942 1_4:-29969910 Msa0159480:CDS
AGAAGATCCGCCGAATGAGG+CGG 0.577712 1_4:-29967676 Msa0159480:CDS
AGATCTTAGAGTCTCTTCAA+GGG 0.579610 1_4:+29970188 None:intergenic
CTAGTCAAACTCATGGTCAT+GGG 0.581311 1_4:-29967629 Msa0159480:CDS
GATGGTGTCTCCGGAGATGG+TGG 0.581564 1_4:-29967453 Msa0159480:CDS
CGGGAAAACTTCCCTTCATG+TGG 0.583747 1_4:-29967483 Msa0159480:CDS
GGTCTAGGCTCATGTTTCTG+AGG 0.584293 1_4:+29969871 None:intergenic
ATTGGGTCTAGTCCCGAAGG+TGG 0.584493 1_4:+29970018 None:intergenic
GACCTAATTGTGGTGAGAGA+GGG 0.584783 1_4:-29969852 Msa0159480:CDS
AGATTAGTGTACCTCAACCT+TGG 0.585256 1_4:-29967083 Msa0159480:CDS
GTGAAAGCCCTGCTTGAACT+CGG 0.586127 1_4:-29967539 Msa0159480:CDS
ACCATCAACGGTTCTAACTG+TGG 0.586558 1_4:+29967403 None:intergenic
GTAATGCCAATGCTTCATCA+AGG 0.588210 1_4:+29967594 None:intergenic
AAGGGCAAGATCAACGGCTG+AGG 0.588511 1_4:+29969810 None:intergenic
AGACCTAATTGTGGTGAGAG+AGG 0.589965 1_4:-29969853 Msa0159480:CDS
CAAAGGTGTCACACCATCAA+CGG 0.591793 1_4:+29967391 None:intergenic
TGAGAATTGTAGCCGAGAAG+TGG 0.593437 1_4:-29967561 Msa0159480:CDS
CCTATTGGGTCTAGTCCCGA+AGG 0.597805 1_4:+29970015 None:intergenic
GCAGAAGCAACTAGTGAGCA+TGG 0.601200 1_4:-29967963 Msa0159480:intron
CCATCAACGGTTCTAACTGT+GGG 0.604614 1_4:+29967404 None:intergenic
TATGATCTTCACTCATTGGA+GGG 0.606499 1_4:+29967171 None:intergenic
ACCAGACTTGGCAACAAGGT+GGG 0.607953 1_4:+29967856 None:intergenic
GGACTAGACCCAATAGGAGG+AGG 0.611118 1_4:-29970009 Msa0159480:CDS
CAAAGTCGTGGTGATGAAGA+TGG 0.611870 1_4:+29967714 None:intergenic
GAGTTCACCGGAATGACACC+AGG 0.611897 1_4:+29969958 None:intergenic
GGTATCAAGGGCAAGATCAA+CGG 0.613359 1_4:+29969804 None:intergenic
ATCGCTGCATCTTAGCAGCA+AGG 0.614656 1_4:-29970077 Msa0159480:CDS
GGTGATGAAGATGGTGATGG+TGG 0.616762 1_4:+29967723 None:intergenic
TTTGACTAGTTCGACATCCG+AGG 0.618914 1_4:+29967643 None:intergenic
ACCTTTGAAGAGAAAATCAG+AGG 0.620921 1_4:+29967349 None:intergenic
TACCTGAATCTCCTCATCAA+CGG 0.622639 1_4:-29970153 Msa0159480:CDS
CTTGGTGCTACTCAAATGGA+TGG 0.623070 1_4:-29967065 Msa0159480:CDS
AGCGGCAGCTAGGGTATCAA+GGG 0.623566 1_4:+29969792 None:intergenic
GAAGCCATGAATCGTCGTCA+AGG 0.625063 1_4:-29967008 Msa0159480:CDS
TTCTAACTGTGGGATCTGCA+TGG 0.627211 1_4:+29967414 None:intergenic
TCGTAGCCGACTGAGTTCAC+CGG 0.627960 1_4:+29969946 None:intergenic
GAACATGTTGTCCAAAGTTG+GGG 0.630070 1_4:+29967878 None:intergenic
CGTGGTGATGAAGATGGTGA+TGG 0.630562 1_4:+29967720 None:intergenic
TGGCGACAACGTCAATGGAG+AGG 0.634502 1_4:+29967807 None:intergenic
TGTCGAACTAGTCAAACTCA+TGG 0.636426 1_4:-29967636 Msa0159480:CDS
TTGGGTCTAGTCCCGAAGGT+GGG 0.636525 1_4:+29970019 None:intergenic
GGTGGAGTGGCATTAAGGAG+CGG 0.636797 1_4:+29967747 None:intergenic
GGAGACCAGACTTGGCAACA+AGG 0.637078 1_4:+29967852 None:intergenic
TCGTACTGTCGGCTGACGAG+AGG 0.637585 1_4:+29969981 None:intergenic
ATTGTGGTGAGAGAGGGTGC+TGG 0.639310 1_4:-29969846 Msa0159480:CDS
CATCTCCGGAGACACCATCT+CGG 0.640201 1_4:+29967457 None:intergenic
TTAACTTGTTTGGTTCAATG+TGG 0.642616 1_4:+29967309 None:intergenic
CATCTCGGCAGCCACATGAA+GGG 0.642619 1_4:+29967472 None:intergenic
ATGACACCAGGTCGTACTGT+CGG 0.652727 1_4:+29969970 None:intergenic
CATGAGCCTAGACCTAATTG+TGG 0.655015 1_4:-29969862 Msa0159480:CDS
CGTCAGCCGACAGTACGACC+TGG 0.655540 1_4:-29969976 Msa0159480:CDS
CTTCGAAGTCACCAAAGTCG+TGG 0.659191 1_4:+29967702 None:intergenic
GACCAGACTTGGCAACAAGG+TGG 0.659215 1_4:+29967855 None:intergenic
TCGGGACTAGACCCAATAGG+AGG 0.661393 1_4:-29970012 Msa0159480:CDS
TGGAATGAAATAGTGAAGAG+AGG 0.664765 1_4:+29970391 None:intergenic
TGCTGCGGATGTTAACTACC+CGG 0.669914 1_4:-29967516 Msa0159480:CDS
AGGGTTCTAAGTATATCCAA+AGG 0.671624 1_4:+29967374 None:intergenic
TTCAACGCCAAAGTATCTAG+CGG 0.678772 1_4:+29969774 None:intergenic
TGTACAGAAACTGCAACAGG+AGG 0.681852 1_4:+29969914 None:intergenic
GCTTGGCTAGGATTTCAGGT+GGG 0.683050 1_4:+29967831 None:intergenic
CATCCATTTGAGTAGCACCA+AGG 0.686782 1_4:+29967066 None:intergenic
GCCATGAATCGTCGTCAAGG+TGG 0.689108 1_4:-29967005 Msa0159480:CDS
GGTGAACTCAGTCGGCTACG+AGG 0.709456 1_4:-29969944 Msa0159480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAATTTTTTAGTTTTG+GGG + chr1_4:29968301-29968320 None:intergenic 10.0%
!!! GTTTTAAATTTTTTAGTTTT+GGG + chr1_4:29968302-29968321 None:intergenic 10.0%
!!! TGTTTTAAATTTTTTAGTTT+TGG + chr1_4:29968303-29968322 None:intergenic 10.0%
!!! AATTTTTAAAATTACAGTTT+TGG + chr1_4:29968330-29968349 None:intergenic 10.0%
!!! TAAAAACTAAAAAATGTTTT+TGG - chr1_4:29968383-29968402 Msa0159480:intron 10.0%
!!! AAAAACTAAAAAATGTTTTT+GGG - chr1_4:29968384-29968403 Msa0159480:intron 10.0%
!! AGTTATTATCATATAGTATT+AGG - chr1_4:29967074-29967093 Msa0159480:CDS 15.0%
!! GTTATTATCATATAGTATTA+GGG - chr1_4:29967075-29967094 Msa0159480:CDS 15.0%
!!! TTTTTAGTCAACTTTTTTTT+TGG - chr1_4:29967884-29967903 Msa0159480:CDS 15.0%
!!! TTTTAGTCAACTTTTTTTTT+GGG - chr1_4:29967885-29967904 Msa0159480:CDS 15.0%
!!! TTTTATTTTTGAGTCTATAT+AGG - chr1_4:29967970-29967989 Msa0159480:intron 15.0%
!!! TTTATTTTTGAGTCTATATA+GGG - chr1_4:29967971-29967990 Msa0159480:intron 15.0%
!! AAAAAACTAAAACATGTAAA+AGG + chr1_4:29968275-29968294 None:intergenic 15.0%
!! TACATATTAGACTTATAATT+TGG - chr1_4:29968426-29968445 Msa0159480:intron 15.0%
!! AGAAAAATTGTATTGAAAAA+TGG + chr1_4:29968951-29968970 None:intergenic 15.0%
!!! ATAAAGATTTTATGTTGTAA+GGG + chr1_4:29969281-29969300 None:intergenic 15.0%
!!! TATAAAGATTTTATGTTGTA+AGG + chr1_4:29969282-29969301 None:intergenic 15.0%
!!! TTTAGTCAACTTTTTTTTTG+GGG - chr1_4:29967886-29967905 Msa0159480:CDS 20.0%
!! TATAGAACTACCTAAAATAA+GGG + chr1_4:29967919-29967938 None:intergenic 20.0%
!! TTATAGAACTACCTAAAATA+AGG + chr1_4:29967920-29967939 None:intergenic 20.0%
!!! TTTGAAATAGTTTTGGTTTT+CGG - chr1_4:29968211-29968230 Msa0159480:intron 20.0%
!! AATGCAAAAATGAAATAGAA+GGG + chr1_4:29968736-29968755 None:intergenic 20.0%
!! AAATGCAAAAATGAAATAGA+AGG + chr1_4:29968737-29968756 None:intergenic 20.0%
!!! ATAAAGTGATTTGATGATTT+GGG - chr1_4:29969048-29969067 Msa0159480:intron 20.0%
!! TCATGAATTAAACTTAACAT+TGG - chr1_4:29969102-29969121 Msa0159480:intron 20.0%
!! TAAAATATGGCAAATGTTAA+GGG + chr1_4:29969190-29969209 None:intergenic 20.0%
!! TTAAAATATGGCAAATGTTA+AGG + chr1_4:29969191-29969210 None:intergenic 20.0%
!!! CTCTGTACAAATTTAAAATA+TGG + chr1_4:29969203-29969222 None:intergenic 20.0%
!! CTATAAAAGATTACTTCAAT+TGG - chr1_4:29969313-29969332 Msa0159480:intron 20.0%
!! AACAATAATAACAACAACAT+TGG - chr1_4:29970261-29970280 Msa0159480:five_prime_UTR 20.0%
! TATGATAATAACTCCTCAAA+AGG + chr1_4:29967067-29967086 None:intergenic 25.0%
! TACAATCTATTGAACAGTTT+AGG + chr1_4:29967106-29967125 None:intergenic 25.0%
! ATAGAACTACCTAAAATAAG+GGG + chr1_4:29967918-29967937 None:intergenic 25.0%
! TAGTAAGAGTAATGATATGA+GGG + chr1_4:29968036-29968055 None:intergenic 25.0%
! ATAGTAAGAGTAATGATATG+AGG + chr1_4:29968037-29968056 None:intergenic 25.0%
! GTTGAGGTTATAAAACAAAT+TGG - chr1_4:29968120-29968139 Msa0159480:intron 25.0%
!!! TGATTTAGTTTGTTCTCTTT+TGG + chr1_4:29968635-29968654 None:intergenic 25.0%
!! CATAAAGTGATTTGATGATT+TGG - chr1_4:29969047-29969066 Msa0159480:intron 25.0%
!! TAAAGTGATTTGATGATTTG+GGG - chr1_4:29969049-29969068 Msa0159480:intron 25.0%
! GTTAAGTTTAATTCATGACT+TGG + chr1_4:29969100-29969119 None:intergenic 25.0%
!! CCTTAAATACACTTTTCTTA+TGG + chr1_4:29969238-29969257 None:intergenic 25.0%
!! CCATAAGAAAAGTGTATTTA+AGG - chr1_4:29969235-29969254 Msa0159480:intron 25.0%
!! AAGAAAAGTGTATTTAAGGA+AGG - chr1_4:29969239-29969258 Msa0159480:intron 25.0%
!! AGAAAAGTGTATTTAAGGAA+GGG - chr1_4:29969240-29969259 Msa0159480:intron 25.0%
ATCTATTGAACAGTTTAGGT+TGG + chr1_4:29967102-29967121 None:intergenic 30.0%
! TTCTTCAGGAAATTCTTTTG+TGG - chr1_4:29967338-29967357 Msa0159480:CDS 30.0%
! TCTTCAGGAAATTCTTTTGT+GGG - chr1_4:29967339-29967358 Msa0159480:CDS 30.0%
TTTGAGTCTATATAGGGATT+TGG - chr1_4:29967977-29967996 Msa0159480:intron 30.0%
AATGATATGAGGGAATTTCT+TGG + chr1_4:29968026-29968045 None:intergenic 30.0%
AAACATTCAAAACAGACGAT+AGG - chr1_4:29968182-29968201 Msa0159480:intron 30.0%
AACATTCAAAACAGACGATA+GGG - chr1_4:29968183-29968202 Msa0159480:intron 30.0%
TGGTACATGAAATCAATGAA+GGG + chr1_4:29968462-29968481 None:intergenic 30.0%
ATGTATAGAGTTTCTCGAAT+TGG - chr1_4:29968483-29968502 Msa0159480:intron 30.0%
CACAAAATCTTTCCTAAAGA+TGG - chr1_4:29968583-29968602 Msa0159480:intron 30.0%
!!! TTTAGTTTGTTCTCTTTTGG+AGG + chr1_4:29968632-29968651 None:intergenic 30.0%
TGGAAAAAAGTGAGATTTGT+TGG + chr1_4:29968764-29968783 None:intergenic 30.0%
! GAGAAATTGTGAATTTTCTG+AGG + chr1_4:29968819-29968838 None:intergenic 30.0%
! AATGTTAAAGAGTACGCTTA+GGG + chr1_4:29968997-29969016 None:intergenic 30.0%
! AAATGTTAAAGAGTACGCTT+AGG + chr1_4:29968998-29969017 None:intergenic 30.0%
!! TTAACTTGTTTGGTTCAATG+TGG + chr1_4:29970080-29970099 None:intergenic 30.0%
ACATTGAACCAAACAAGTTA+AGG - chr1_4:29970079-29970098 Msa0159480:CDS 30.0%
!! AAACACAACCTTAACTTGTT+TGG + chr1_4:29970090-29970109 None:intergenic 30.0%
AAACAAGTTAAGGTTGTGTT+TGG - chr1_4:29970089-29970108 Msa0159480:CDS 30.0%
CTAATCTTGAATCCAAATTC+AGG + chr1_4:29970290-29970309 None:intergenic 30.0%
TGAAATAGTGAAGAGAGGTT+GGG + chr1_4:29966993-29967012 None:intergenic 35.0%
ATGAAATAGTGAAGAGAGGT+TGG + chr1_4:29966994-29967013 None:intergenic 35.0%
TGGAATGAAATAGTGAAGAG+AGG + chr1_4:29966998-29967017 None:intergenic 35.0%
ATAAGAGATGAGTGAGTGAT+TGG + chr1_4:29967018-29967037 None:intergenic 35.0%
! TCTCTTTTTCTCACCTTTTG+AGG - chr1_4:29967051-29967070 Msa0159480:CDS 35.0%
TCAAACACAGTAACAGAAAC+AGG - chr1_4:29967155-29967174 Msa0159480:CDS 35.0%
AGATCTTAGAGTCTCTTCAA+GGG + chr1_4:29967201-29967220 None:intergenic 35.0%
!!! ATGGTTTTTGGAATGTGGAA+AGG - chr1_4:29967824-29967843 Msa0159480:CDS 35.0%
!!! TGGTTTTTGGAATGTGGAAA+GGG - chr1_4:29967825-29967844 Msa0159480:CDS 35.0%
AACAAGTTCTCACTCTTACT+TGG - chr1_4:29968084-29968103 Msa0159480:intron 35.0%
ACAAGTTCTCACTCTTACTT+GGG - chr1_4:29968085-29968104 Msa0159480:intron 35.0%
ACATTCAAAACAGACGATAG+GGG - chr1_4:29968184-29968203 Msa0159480:intron 35.0%
!! GGGTCTGTTTGAAATAGTTT+TGG - chr1_4:29968204-29968223 Msa0159480:intron 35.0%
GTGGTACATGAAATCAATGA+AGG + chr1_4:29968463-29968482 None:intergenic 35.0%
TTCGAGAAACTCTATACATG+TGG + chr1_4:29968482-29968501 None:intergenic 35.0%
! GATTTTGTGTGCTTCATTTG+CGG + chr1_4:29968572-29968591 None:intergenic 35.0%
!! TCACTTTCCTCATTTGGTTT+TGG - chr1_4:29968606-29968625 Msa0159480:intron 35.0%
AGGGAGAGAAAAAATGTTGA+GGG + chr1_4:29968717-29968736 None:intergenic 35.0%
AAGGGAGAGAAAAAATGTTG+AGG + chr1_4:29968718-29968737 None:intergenic 35.0%
!!! CTCACTTTTTTCCATAAACC+CGG - chr1_4:29968770-29968789 Msa0159480:intron 35.0%
!!! ATGGCAAATTTTGATTGCAC+CGG + chr1_4:29968792-29968811 None:intergenic 35.0%
!! GTGAATTTTCTGAGGACTTA+TGG + chr1_4:29968811-29968830 None:intergenic 35.0%
TTTCATCACATCGTCTATTG+AGG + chr1_4:29969458-29969477 None:intergenic 35.0%
TCTAAACCTTGATGAAGCAT+TGG - chr1_4:29969786-29969805 Msa0159480:CDS 35.0%
!! AGGGTTCTAAGTATATCCAA+AGG + chr1_4:29970015-29970034 None:intergenic 35.0%
GAAGAGAAAATCAGAGGTTA+GGG + chr1_4:29970034-29970053 None:intergenic 35.0%
TGAAGAGAAAATCAGAGGTT+AGG + chr1_4:29970035-29970054 None:intergenic 35.0%
! ACCTCTGATTTTCTCTTCAA+AGG - chr1_4:29970036-29970055 Msa0159480:CDS 35.0%
! ACCTTTGAAGAGAAAATCAG+AGG + chr1_4:29970040-29970059 None:intergenic 35.0%
TATGATCTTCACTCATTGGA+GGG + chr1_4:29970218-29970237 None:intergenic 35.0%
! CAACATTGGTAACCTGAATT+TGG - chr1_4:29970275-29970294 Msa0159480:five_prime_UTR 35.0%
GAGAGTGATGATACATTGTT+GGG + chr1_4:29970419-29970438 None:intergenic 35.0%
TGAGAGTGATGATACATTGT+TGG + chr1_4:29970420-29970439 None:intergenic 35.0%
AAGGTGAGAAAAAGAGAGAG+AGG + chr1_4:29967048-29967067 None:intergenic 40.0%
GAGATCTTAGAGTCTCTTCA+AGG + chr1_4:29967202-29967221 None:intergenic 40.0%
TACCTGAATCTCCTCATCAA+CGG - chr1_4:29967233-29967252 Msa0159480:CDS 40.0%
! TTTCCAAGTTGAAGGTCGTT+TGG - chr1_4:29967277-29967296 Msa0159480:CDS 40.0%
! TTCAACGCCAAAGTATCTAG+CGG + chr1_4:29967615-29967634 None:intergenic 40.0%
! GTGACCAGTCATATGTTTTC+TGG - chr1_4:29967779-29967798 Msa0159480:CDS 40.0%
CTTGCCAGAAAACATATGAC+TGG + chr1_4:29967786-29967805 None:intergenic 40.0%
!! GTCATATGTTTTCTGGCAAG+CGG - chr1_4:29967786-29967805 Msa0159480:CDS 40.0%
!! AAGGGAAAGGGTATGGTTTT+TGG - chr1_4:29967812-29967831 Msa0159480:CDS 40.0%
!!! AGGGTATGGTTTTTGGAATG+TGG - chr1_4:29967819-29967838 Msa0159480:CDS 40.0%
!!! GGTTTTTGGAATGTGGAAAG+GGG - chr1_4:29967826-29967845 Msa0159480:CDS 40.0%
!!! GGGTTTGTTCCCCTTATTTT+AGG - chr1_4:29967906-29967925 Msa0159480:CDS 40.0%
TCATTTGCGGAAGACAAGAT+TGG + chr1_4:29968559-29968578 None:intergenic 40.0%
TGAGGAAAGTGACCATCTTT+AGG + chr1_4:29968598-29968617 None:intergenic 40.0%
! AGATGGTCACTTTCCTCATT+TGG - chr1_4:29968600-29968619 Msa0159480:intron 40.0%
GGGAGAGAAAAAATGTTGAG+GGG + chr1_4:29968716-29968735 None:intergenic 40.0%
!! TTTTGATTGCACCGGGTTTA+TGG + chr1_4:29968784-29968803 None:intergenic 40.0%
!!! TGGCAAATTTTGATTGCACC+GGG + chr1_4:29968791-29968810 None:intergenic 40.0%
! AGTGATTTGATGATTTGGGG+AGG - chr1_4:29969052-29969071 Msa0159480:intron 40.0%
! ATGATTTGGGGAGGAACATA+GGG - chr1_4:29969061-29969080 Msa0159480:intron 40.0%
GAACATGTTGTCCAAAGTTG+GGG + chr1_4:29969511-29969530 None:intergenic 40.0%
GGAACATGTTGTCCAAAGTT+GGG + chr1_4:29969512-29969531 None:intergenic 40.0%
! TAGACGAAGGTCTTCGATTT+TGG + chr1_4:29969602-29969621 None:intergenic 40.0%
! CTAAGGAGGATTTTAGACGA+AGG + chr1_4:29969615-29969634 None:intergenic 40.0%
TGTCGAACTAGTCAAACTCA+TGG - chr1_4:29969750-29969769 Msa0159480:intron 40.0%
ACTAGTCAAACTCATGGTCA+TGG - chr1_4:29969756-29969775 Msa0159480:CDS 40.0%
CTAGTCAAACTCATGGTCAT+GGG - chr1_4:29969757-29969776 Msa0159480:CDS 40.0%
GTAATGCCAATGCTTCATCA+AGG + chr1_4:29969795-29969814 None:intergenic 40.0%
GGTTCAATGTGGTTTAATCC+AGG + chr1_4:29970069-29970088 None:intergenic 40.0%
TCACTCATTGGAGGGTAAAT+TGG + chr1_4:29970210-29970229 None:intergenic 40.0%
CTATGATCTTCACTCATTGG+AGG + chr1_4:29970219-29970238 None:intergenic 40.0%
CTGCTATGATCTTCACTCAT+TGG + chr1_4:29970222-29970241 None:intergenic 40.0%
AGATTAGTGTACCTCAACCT+TGG - chr1_4:29970303-29970322 Msa0159480:five_prime_UTR 40.0%
GAGGAGATTCAGGTAGTCAA+GGG + chr1_4:29967228-29967247 None:intergenic 45.0%
TGAGGAGATTCAGGTAGTCA+AGG + chr1_4:29967229-29967248 None:intergenic 45.0%
! GACGTCACTTTCCAAGTTGA+AGG - chr1_4:29967269-29967288 Msa0159480:CDS 45.0%
GAACCAAACGACCTTCAACT+TGG + chr1_4:29967283-29967302 None:intergenic 45.0%
! CAGCAAGGAGTCTTTTCTTC+AGG - chr1_4:29967324-29967343 Msa0159480:CDS 45.0%
! CAGGAAATTCTTTTGTGGGC+CGG - chr1_4:29967343-29967362 Msa0159480:CDS 45.0%
TGTACAGAAACTGCAACAGG+AGG + chr1_4:29967475-29967494 None:intergenic 45.0%
CACTGTACAGAAACTGCAAC+AGG + chr1_4:29967478-29967497 None:intergenic 45.0%
CTGTTGCAGTTTCTGTACAG+TGG - chr1_4:29967476-29967495 Msa0159480:CDS 45.0%
CATGAGCCTAGACCTAATTG+TGG - chr1_4:29967524-29967543 Msa0159480:CDS 45.0%
CTCTCACCACAATTAGGTCT+AGG + chr1_4:29967533-29967552 None:intergenic 45.0%
AGACCTAATTGTGGTGAGAG+AGG - chr1_4:29967533-29967552 Msa0159480:CDS 45.0%
GACCTAATTGTGGTGAGAGA+GGG - chr1_4:29967534-29967553 Msa0159480:CDS 45.0%
GGTATCAAGGGCAAGATCAA+CGG + chr1_4:29967585-29967604 None:intergenic 45.0%
! AAAGTATCTAGCGGCAGCTA+GGG + chr1_4:29967606-29967625 None:intergenic 45.0%
!! ATATGTTTTCTGGCAAGCGG+AGG - chr1_4:29967789-29967808 Msa0159480:CDS 45.0%
GAGGGAATTTCTTGGAAGAG+AGG + chr1_4:29968018-29968037 None:intergenic 45.0%
! TGGGATTGAGACTTGAGTTG+AGG - chr1_4:29968104-29968123 Msa0159480:intron 45.0%
TTGGAGGCCAAAACCAAATG+AGG + chr1_4:29968616-29968635 None:intergenic 45.0%
! GATGATTTGGGGAGGAACAT+AGG - chr1_4:29969060-29969079 Msa0159480:intron 45.0%
AGCAAGAAATGCCCCAACTT+TGG - chr1_4:29969497-29969516 Msa0159480:intron 45.0%
GGGAACATGTTGTCCAAAGT+TGG + chr1_4:29969513-29969532 None:intergenic 45.0%
!! GATTTTGGCGACAACGTCAA+TGG + chr1_4:29969587-29969606 None:intergenic 45.0%
! CAAAGTCGTGGTGATGAAGA+TGG + chr1_4:29969675-29969694 None:intergenic 45.0%
CATCTTCATCACCACGACTT+TGG - chr1_4:29969673-29969692 Msa0159480:intron 45.0%
! TTTGACTAGTTCGACATCCG+AGG + chr1_4:29969746-29969765 None:intergenic 45.0%
AAACTCATGGTCATGGGAGA+AGG - chr1_4:29969763-29969782 Msa0159480:CDS 45.0%
TGAGAATTGTAGCCGAGAAG+TGG - chr1_4:29969825-29969844 Msa0159480:CDS 45.0%
! CACATGAAGGGAAGTTTTCC+CGG + chr1_4:29969905-29969924 None:intergenic 45.0%
TTCTAACTGTGGGATCTGCA+TGG + chr1_4:29969975-29969994 None:intergenic 45.0%
! CCATCAACGGTTCTAACTGT+GGG + chr1_4:29969985-29970004 None:intergenic 45.0%
! ACCATCAACGGTTCTAACTG+TGG + chr1_4:29969986-29970005 None:intergenic 45.0%
!! CAAAGGTGTCACACCATCAA+CGG + chr1_4:29969998-29970017 None:intergenic 45.0%
TTTGAGTAGCACCAAGGTTG+AGG + chr1_4:29970317-29970336 None:intergenic 45.0%
!! CAACCTTGGTGCTACTCAAA+TGG - chr1_4:29970317-29970336 Msa0159480:five_prime_UTR 45.0%
CATCCATTTGAGTAGCACCA+AGG + chr1_4:29970323-29970342 None:intergenic 45.0%
!! CTTGGTGCTACTCAAATGGA+TGG - chr1_4:29970321-29970340 Msa0159480:five_prime_UTR 45.0%
!!! TAATATTTTCATTTTATTTA+AGG + chr1_4:29969022-29969041 None:intergenic 5.0%
!! TTAAATAAAATGAAAATATT+AGG - chr1_4:29969021-29969040 Msa0159480:intron 5.0%
!! ATTAACAAATAATTTAATAT+TGG + chr1_4:29969371-29969390 None:intergenic 5.0%
TTGGAAAGTGACGTCGCTGA+AGG + chr1_4:29967264-29967283 None:intergenic 50.0%
ATCGCTGCATCTTAGCAGCA+AGG - chr1_4:29967309-29967328 Msa0159480:CDS 50.0%
AGGATCCTCCTCCTCCTATT+GGG + chr1_4:29967388-29967407 None:intergenic 50.0%
ATGACACCAGGTCGTACTGT+CGG + chr1_4:29967419-29967438 None:intergenic 50.0%
!! AGTACGACCTGGTGTCATTC+CGG - chr1_4:29967421-29967440 Msa0159480:CDS 50.0%
GTCATTCCGGTGAACTCAGT+CGG - chr1_4:29967434-29967453 Msa0159480:CDS 50.0%
ACAGAAACTGCAACAGGAGG+AGG + chr1_4:29967472-29967491 None:intergenic 50.0%
! GGTCTAGGCTCATGTTTCTG+AGG + chr1_4:29967518-29967537 None:intergenic 50.0%
CACCCTCTCTCACCACAATT+AGG + chr1_4:29967539-29967558 None:intergenic 50.0%
! CAAAGTATCTAGCGGCAGCT+AGG + chr1_4:29967607-29967626 None:intergenic 50.0%
CTAGCTGCCGCTAGATACTT+TGG - chr1_4:29967605-29967624 Msa0159480:CDS 50.0%
ACAGCTTGCATTGCTCACTC+AGG - chr1_4:29967634-29967653 Msa0159480:CDS 50.0%
!! TTTTCTGGCAAGCGGAGGAA+GGG - chr1_4:29967794-29967813 Msa0159480:CDS 50.0%
GCAGAAGCAACTAGTGAGCA+TGG - chr1_4:29969423-29969442 Msa0159480:intron 50.0%
ACCAGACTTGGCAACAAGGT+GGG + chr1_4:29969533-29969552 None:intergenic 50.0%
! GCTTGGCTAGGATTTCAGGT+GGG + chr1_4:29969558-29969577 None:intergenic 50.0%
TGCTTGGCTAGGATTTCAGG+TGG + chr1_4:29969559-29969578 None:intergenic 50.0%
AGGTGCTTGGCTAGGATTTC+AGG + chr1_4:29969562-29969581 None:intergenic 50.0%
!! AACGTCAATGGAGAGGTGCT+TGG + chr1_4:29969575-29969594 None:intergenic 50.0%
!! GATGAAGATGGTGATGGTGG+TGG + chr1_4:29969663-29969682 None:intergenic 50.0%
!! GGTGATGAAGATGGTGATGG+TGG + chr1_4:29969666-29969685 None:intergenic 50.0%
! CGTGGTGATGAAGATGGTGA+TGG + chr1_4:29969669-29969688 None:intergenic 50.0%
CTTCGAAGTCACCAAAGTCG+TGG + chr1_4:29969687-29969706 None:intergenic 50.0%
TTCGACATCCGAGGAGTCAA+GGG + chr1_4:29969737-29969756 None:intergenic 50.0%
GTGAAAGCCCTGCTTGAACT+CGG - chr1_4:29969847-29969866 Msa0159480:CDS 50.0%
TGCTGCGGATGTTAACTACC+CGG - chr1_4:29969870-29969889 Msa0159480:CDS 50.0%
! ATGAAGGGAAGTTTTCCCGG+CGG + chr1_4:29969902-29969921 None:intergenic 50.0%
CGGGAAAACTTCCCTTCATG+TGG - chr1_4:29969903-29969922 Msa0159480:CDS 50.0%
AGCAAAACTGCCACCATCTC+CGG + chr1_4:29969946-29969965 None:intergenic 50.0%
CCCACAGTTAGAACCGTTGA+TGG - chr1_4:29969982-29970001 Msa0159480:CDS 50.0%
!! CGTTGATGGTGTGACACCTT+TGG - chr1_4:29969996-29970015 Msa0159480:CDS 50.0%
!! CTCTTCAAAGGTGCTGTTCC+TGG - chr1_4:29970048-29970067 Msa0159480:CDS 50.0%
GATCATAGCAGCAGTAGCAG+TGG - chr1_4:29970231-29970250 Msa0159480:five_prime_UTR 50.0%
GAAGCCATGAATCGTCGTCA+AGG - chr1_4:29970378-29970397 Msa0159480:five_prime_UTR 50.0%
ACCACCTTGACGACGATTCA+TGG + chr1_4:29970385-29970404 None:intergenic 50.0%
AATCGTCGTCAAGGTGGTCA+TGG - chr1_4:29970387-29970406 Msa0159480:five_prime_UTR 50.0%
! GGCCGTTGATGAGGAGATTC+AGG + chr1_4:29967238-29967257 None:intergenic 55.0%
TGAAGGCTTGGCCGTTGATG+AGG + chr1_4:29967247-29967266 None:intergenic 55.0%
AAGTGACGTCGCTGAAGGCT+TGG + chr1_4:29967259-29967278 None:intergenic 55.0%
TTGGGTCTAGTCCCGAAGGT+GGG + chr1_4:29967370-29967389 None:intergenic 55.0%
ATTGGGTCTAGTCCCGAAGG+TGG + chr1_4:29967371-29967390 None:intergenic 55.0%
CCTATTGGGTCTAGTCCCGA+AGG + chr1_4:29967374-29967393 None:intergenic 55.0%
CCTTCGGGACTAGACCCAAT+AGG - chr1_4:29967371-29967390 Msa0159480:CDS 55.0%
TCGGGACTAGACCCAATAGG+AGG - chr1_4:29967374-29967393 Msa0159480:CDS 55.0%
GGACTAGACCCAATAGGAGG+AGG - chr1_4:29967377-29967396 Msa0159480:CDS 55.0%
CTAGACCCAATAGGAGGAGG+AGG - chr1_4:29967380-29967399 Msa0159480:CDS 55.0%
GAGGATCCTCCTCCTCCTAT+TGG + chr1_4:29967389-29967408 None:intergenic 55.0%
GAGTTCACCGGAATGACACC+AGG + chr1_4:29967431-29967450 None:intergenic 55.0%
TCGTAGCCGACTGAGTTCAC+CGG + chr1_4:29967443-29967462 None:intergenic 55.0%
! ATTGTGGTGAGAGAGGGTGC+TGG - chr1_4:29967540-29967559 Msa0159480:CDS 55.0%
AAGGGCAAGATCAACGGCTG+AGG + chr1_4:29967579-29967598 None:intergenic 55.0%
! AGCGGCAGCTAGGGTATCAA+GGG + chr1_4:29967597-29967616 None:intergenic 55.0%
! TAGCGGCAGCTAGGGTATCA+AGG + chr1_4:29967598-29967617 None:intergenic 55.0%
!! GTTTTCTGGCAAGCGGAGGA+AGG - chr1_4:29967793-29967812 Msa0159480:CDS 55.0%
TCCCACCTTGTTGCCAAGTC+TGG - chr1_4:29969529-29969548 Msa0159480:intron 55.0%
GACCAGACTTGGCAACAAGG+TGG + chr1_4:29969534-29969553 None:intergenic 55.0%
GGAGACCAGACTTGGCAACA+AGG + chr1_4:29969537-29969556 None:intergenic 55.0%
TTCAGGTGGGAGACCAGACT+TGG + chr1_4:29969545-29969564 None:intergenic 55.0%
!! CAATGGAGAGGTGCTTGGCT+AGG + chr1_4:29969570-29969589 None:intergenic 55.0%
TGGCGACAACGTCAATGGAG+AGG + chr1_4:29969582-29969601 None:intergenic 55.0%
CATTAAGGAGCGGCGTGCTA+AGG + chr1_4:29969632-29969651 None:intergenic 55.0%
GGTGGAGTGGCATTAAGGAG+CGG + chr1_4:29969642-29969661 None:intergenic 55.0%
!! GTGGTGGTGGAGTGGCATTA+AGG + chr1_4:29969647-29969666 None:intergenic 55.0%
!! GAAGATGGTGATGGTGGTGG+TGG + chr1_4:29969660-29969679 None:intergenic 55.0%
ACCAGAAGATCCGCCGAATG+AGG - chr1_4:29969707-29969726 Msa0159480:intron 55.0%
AGAAGATCCGCCGAATGAGG+CGG - chr1_4:29969710-29969729 Msa0159480:intron 55.0%
GTTCGACATCCGAGGAGTCA+AGG + chr1_4:29969738-29969757 None:intergenic 55.0%
GCAGGGCTTTCACCACTTCT+CGG + chr1_4:29969840-29969859 None:intergenic 55.0%
! TGAAGGGAAGTTTTCCCGGC+GGG + chr1_4:29969901-29969920 None:intergenic 55.0%
CATCTCGGCAGCCACATGAA+GGG + chr1_4:29969917-29969936 None:intergenic 55.0%
CATCTCCGGAGACACCATCT+CGG + chr1_4:29969932-29969951 None:intergenic 55.0%
GCCATGAATCGTCGTCAAGG+TGG - chr1_4:29970381-29970400 Msa0159480:five_prime_UTR 55.0%
TCTAGTCCCGAAGGTGGGTC+CGG + chr1_4:29967365-29967384 None:intergenic 60.0%
! TCGTACTGTCGGCTGACGAG+AGG + chr1_4:29967408-29967427 None:intergenic 60.0%
GGTGAACTCAGTCGGCTACG+AGG - chr1_4:29967442-29967461 Msa0159480:CDS 60.0%
TGGCAAGCGGAGGAAGGGAA+AGG - chr1_4:29967799-29967818 Msa0159480:CDS 60.0%
GGCAAGCGGAGGAAGGGAAA+GGG - chr1_4:29967800-29967819 Msa0159480:CDS 60.0%
GCGGAGGAAGGGAAAGGGTA+TGG - chr1_4:29967805-29967824 Msa0159480:CDS 60.0%
TAAGGAGCGGCGTGCTAAGG+AGG + chr1_4:29969629-29969648 None:intergenic 60.0%
!! TGGTGATGGTGGTGGTGGAG+TGG + chr1_4:29969655-29969674 None:intergenic 60.0%
GCCTCATTCGGCGGATCTTC+TGG + chr1_4:29969711-29969730 None:intergenic 60.0%
GAAGATCCGCCGAATGAGGC+GGG - chr1_4:29969711-29969730 Msa0159480:intron 60.0%
AGTCAAGGGCCCGCCTCATT+CGG + chr1_4:29969723-29969742 None:intergenic 60.0%
! CGCAGCACCGAGTTCAAGCA+GGG + chr1_4:29969857-29969876 None:intergenic 60.0%
!! CCTGCTTGAACTCGGTGCTG+CGG - chr1_4:29969855-29969874 Msa0159480:CDS 60.0%
GCGGATGTTAACTACCCGGC+TGG - chr1_4:29969874-29969893 Msa0159480:CDS 60.0%
CCATCTCGGCAGCCACATGA+AGG + chr1_4:29969918-29969937 None:intergenic 60.0%
CCTTCATGTGGCTGCCGAGA+TGG - chr1_4:29969915-29969934 Msa0159480:CDS 60.0%
CGAGATGGTGTCTCCGGAGA+TGG - chr1_4:29969930-29969949 Msa0159480:CDS 60.0%
GATGGTGTCTCCGGAGATGG+TGG - chr1_4:29969933-29969952 Msa0159480:CDS 60.0%
TTGTGGGCCGGACCCACCTT+CGG - chr1_4:29967355-29967374 Msa0159480:CDS 65.0%
CGTCAGCCGACAGTACGACC+TGG - chr1_4:29967410-29967429 Msa0159480:CDS 65.0%
! CCGCAGCACCGAGTTCAAGC+AGG + chr1_4:29969858-29969877 None:intergenic 65.0%
GGCTGCCGAGATGGTGTCTC+CGG - chr1_4:29969924-29969943 Msa0159480:CDS 65.0%
TGTGGGCCGGACCCACCTTC+GGG - chr1_4:29967356-29967375 Msa0159480:CDS 70.0%
CAAGGGCCCGCCTCATTCGG+CGG + chr1_4:29969720-29969739 None:intergenic 70.0%
GAGGCGGGCCCTTGACTCCT+CGG - chr1_4:29969726-29969745 Msa0159480:intron 70.0%
AACTACCCGGCTGGACCCGC+CGG - chr1_4:29969883-29969902 Msa0159480:CDS 70.0%
! TTTTCCCGGCGGGTCCAGCC+GGG + chr1_4:29969891-29969910 None:intergenic 70.0%
! GTTTTCCCGGCGGGTCCAGC+CGG + chr1_4:29969892-29969911 None:intergenic 70.0%
ACTACCCGGCTGGACCCGCC+GGG - chr1_4:29969884-29969903 Msa0159480:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 29966959 29970449 29966959 ID=Msa0159480;Name=Msa0159480
chr1_4 mRNA 29966959 29970449 29966959 ID=Msa0159480-mRNA-1;Parent=Msa0159480;Name=Msa0159480-mRNA-1;_AED=0.00;_eAED=0.00;_QI=235|1|0.5|1|1|1|2|0|494
chr1_4 exon 29966959 29967981 29966959 ID=Msa0159480-mRNA-1:exon:9643;Parent=Msa0159480-mRNA-1
chr1_4 exon 29969753 29970449 29969753 ID=Msa0159480-mRNA-1:exon:9642;Parent=Msa0159480-mRNA-1
chr1_4 five_prime_UTR 29970215 29970449 29970215 ID=Msa0159480-mRNA-1:five_prime_utr;Parent=Msa0159480-mRNA-1
chr1_4 CDS 29969753 29970214 29969753 ID=Msa0159480-mRNA-1:cds;Parent=Msa0159480-mRNA-1
chr1_4 CDS 29966959 29967981 29966959 ID=Msa0159480-mRNA-1:cds;Parent=Msa0159480-mRNA-1
Gene Sequence

>Msa0159480

ATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTGAATCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAAGGTCGTTTGGTTCATGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTTTGTGGGCCGGACCCACCTTCGGGACTAGACCCAATAGGAGGAGGAGGATCCTCTCGTCAGCCGACAGTACGACCTGGTGTCATTCCGGTGAACTCAGTCGGCTACGAGGTGTTCCTCCTCCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGACCTAATTGTGGTGAGAGAGGGTGCTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGATACCCTAGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAAAAAGCAAGAAATGCCCCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCTGGTCTCCCACCTGAAATCCTAGCCAAGCACCTCTCCATTGACGTTGTCGCCAAAATCGAAGACCTTCGTCTAAAATCCTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCATCACCATCTTCATCACCACGACTTTGGTGACTTCGAAGACCAGAAGATCCGCCGAATGAGGCGGGCCCTTGACTCCTCGGATGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGTCTAAACCTTGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTGCTTGAACTCGGTGCTGCGGATGTTAACTACCCGGCTGGACCCGCCGGGAAAACTTCCCTTCATGTGGCTGCCGAGATGGTGTCTCCGGAGATGGTGGCAGTTTTGCTTGATCACCATGCAGATCCCACAGTTAGAACCGTTGATGGTGTGACACCTTTGGATATACTTAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAAACCACATTGAACCAAACAAGTTAAGGTTGTGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTCTTTCACGTGAAGAAAACAATGCTAGTAACAATAATAACAACAACAATAATGCTTCTTCATCAGCAGCACCAATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGTAGCAGTGGCAACAACAACAATAATAACAACAACATTGGTAACCTGAATTTGGATTCAAGATTAGTGTACCTCAACCTTGGTGCTACTCAAATGGATGGTGAAGATGATAATCGACACAACAATAGTCATAGAGAAGCCATGAATCGTCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCACGACTTCTAA
Protein sequence

>Msa0159480

MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGGSSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASKKQEMPQLWTTCSHLVAKSGLPPEILAKHLSIDVVAKIEDLRLKSSLARRSLMPLHHHHHHLHHHDFGDFEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTSLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLNHIEPNKLRLCLELVQSAALVLSREENNASNNNNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNNIGNLNLDSRLVYLNLGATQMDGEDDNRHNNSHREAMNRRQGGHGCDPTMYHHSHDF*