AlfalfaGEDB | Msa1147980

M. sativa cultivar zhongmu-4 / Msa1147980

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF06943.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147980	XP_013448462.1	98.623	363	5	0	1	363	1	363	0.0	748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147980	sp\|Q7XJE6\|MCA1_ARATH	72.778	360	91	4	5	363	14	367	0.0	516

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147980	A0A072TYB8	98.623	363	5	0	1	363	1	363	0.0	748

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017590	Msa1147980	0.818594	1.806726e-52	-8.615850e-47
Msa0020630	Msa1147980	-0.817603	3.027589e-52	-8.615850e-47
Msa0020990	Msa1147980	0.813446	2.549597e-51	-8.615850e-47
Msa0038350	Msa1147980	0.805811	1.114897e-49	-8.615850e-47
Msa0040550	Msa1147980	0.855728	5.192379e-62	-8.615850e-47
Msa0046660	Msa1147980	0.801559	8.505408e-49	-8.615850e-47
Msa0064550	Msa1147980	-0.801464	8.895412e-49	-8.615850e-47
Msa0068410	Msa1147980	-0.805556	1.260991e-49	-8.615850e-47
Msa0068700	Msa1147980	0.833300	5.774171e-56	-8.615850e-47
Msa0075310	Msa1147980	-0.806265	8.945009e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147980	MtrunA17_Chr7g0233321	98.623	363	5	0	1	363	1	363	0.0	748
Msa1147980	MtrunA17_Chr2g0279251	48.438	320	142	7	48	363	67	367	1.01e-100	302
Msa1147980	MtrunA17_Chr2g0279261	42.006	319	153	7	55	363	86	382	1.06e-84	261
Msa1147980	MtrunA17_Chr4g0050361	42.271	317	125	9	51	363	35	297	2.32e-73	229
Msa1147980	MtrunA17_Chr4g0050351	39.490	314	167	6	52	363	107	399	1.18e-71	228
Msa1147980	MtrunA17_Chr2g0279271	35.967	367	199	8	9	359	44	390	1.86e-66	215
Msa1147980	MtrunA17_Chr2g0309701	40.000	150	83	3	74	222	6	149	2.31e-25	105
Msa1147980	MtrunA17_Chr8g0356311	37.333	150	87	4	74	222	3	146	1.53e-23	100
Msa1147980	MtrunA17_Chr7g0254941	34.641	153	93	4	72	222	5	152	6.75e-19	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1147980	AT1G02170.1	72.778	360	91	4	5	363	14	367	0.0	516
Msa1147980	AT4G25110.2	53.589	418	132	10	5	363	3	417	2.13e-144	415
Msa1147980	AT4G25110.1	53.699	419	131	11	5	363	3	418	1.49e-143	413
Msa1147980	AT5G64240.2	44.211	380	177	6	1	363	1	362	1.06e-98	297
Msa1147980	AT5G64240.1	45.993	287	135	4	1	270	1	284	4.00e-80	248
Msa1147980	AT1G79340.1	39.333	150	84	4	74	222	3	146	5.65e-26	108
Msa1147980	AT1G79330.1	37.333	150	87	4	74	222	3	146	3.09e-25	105
Msa1147980	AT1G79320.1	38.667	150	85	5	74	222	3	146	5.38e-24	102
Msa1147980	AT1G79310.1	36.667	150	88	4	74	222	3	146	4.91e-22	96.7
Msa1147980	AT5G04200.1	35.526	152	90	4	73	222	9	154	3.35e-20	90.5

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Find 143 sgRNAs with CRISPR-Local

Find 450 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCACAACATCAGGA+TGG	0.675310	7_4:+27750636	Msa1147980:CDS
AATGCTGGTAGCGGTGGTAG+TGG	0.498739	7_4:+27754440	Msa1147980:CDS
AATTAGCAAAATATAGTAGA+AGG	0.421121	7_4:-27755111	None:intergenic
AATTGTATTTATTGATAAGA+AGG	0.457818	7_4:-27749355	None:intergenic
AATTTATTTGGTTATTGCCA+AGG	0.492842	7_4:+27755017	Msa1147980:three_prime_UTR
AATTTCACATTTAGAGGCGA+GGG	0.574237	7_4:+27755164	Msa1147980:three_prime_UTR
ACACACCTGACCTAGGGCGA+TGG	0.630096	7_4:-27752631	None:intergenic
ACAGTCGTGGACAATATGTA+TGG	0.461674	7_4:+27752603	Msa1147980:intron
ACATCAGGATGGCAATGTTT+TGG	0.338812	7_4:+27750647	Msa1147980:CDS
ACATCGTTAGGGGTATAATT+GGG	0.505264	7_4:-27749031	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTATTCCAAAGTGATCTA+TGG	+	chr7_4:27749958-27749977	Msa1147980:intron	30.0%
TGAAATTCCATAGATCACTT+TGG	-	chr7_4:27749968-27749987	None:intergenic	30.0%
AAATGTTAATGATGTGGACT+AGG	+	chr7_4:27750159-27750178	Msa1147980:intron	30.0%
ACTATTTGTGGTCTTTATTC+TGG	+	chr7_4:27750462-27750481	Msa1147980:intron	30.0%
CCTCATGTTACAAAACTAAA+AGG	-	chr7_4:27750540-27750559	None:intergenic	30.0%
TTGTGCTTGTTTGGAAATTT+GGG	-	chr7_4:27750628-27750647	None:intergenic	30.0%
GACCAGAATAATGAAAAACA+AGG	-	chr7_4:27750702-27750721	None:intergenic	30.0%
TGAGGTAACAGTTTGATTAA+TGG	-	chr7_4:27751125-27751144	None:intergenic	30.0%
TGAAGTTTAATAATGCCAAG+AGG	+	chr7_4:27751184-27751203	Msa1147980:intron	30.0%
TGAAATAAAACATCAATGGC+GGG	+	chr7_4:27751255-27751274	Msa1147980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	27748925	27755252	27748925	ID=Msa1147980;Name=Msa1147980
chr7_4	mRNA	27748925	27755252	27748925	ID=Msa1147980-mRNA-1;Parent=Msa1147980;Name=Msa1147980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=125\|1\|1\|1\|0.8\|0.66\|6\|350\|363
chr7_4	exon	27748925	27749407	27748925	ID=Msa1147980-mRNA-1:exon:6751;Parent=Msa1147980-mRNA-1
chr7_4	exon	27750605	27750938	27750605	ID=Msa1147980-mRNA-1:exon:6752;Parent=Msa1147980-mRNA-1
chr7_4	exon	27752607	27752727	27752607	ID=Msa1147980-mRNA-1:exon:6753;Parent=Msa1147980-mRNA-1
chr7_4	exon	27754320	27754538	27754320	ID=Msa1147980-mRNA-1:exon:6754;Parent=Msa1147980-mRNA-1
chr7_4	exon	27754743	27754820	27754743	ID=Msa1147980-mRNA-1:exon:6755;Parent=Msa1147980-mRNA-1
chr7_4	exon	27754921	27755252	27754921	ID=Msa1147980-mRNA-1:exon:6756;Parent=Msa1147980-mRNA-1
chr7_4	five_prime_UTR	27748925	27749049	27748925	ID=Msa1147980-mRNA-1:five_prime_utr;Parent=Msa1147980-mRNA-1
chr7_4	CDS	27749050	27749407	27749050	ID=Msa1147980-mRNA-1:cds;Parent=Msa1147980-mRNA-1
chr7_4	CDS	27750605	27750938	27750605	ID=Msa1147980-mRNA-1:cds;Parent=Msa1147980-mRNA-1
chr7_4	CDS	27752607	27752727	27752607	ID=Msa1147980-mRNA-1:cds;Parent=Msa1147980-mRNA-1
chr7_4	CDS	27754320	27754538	27754320	ID=Msa1147980-mRNA-1:cds;Parent=Msa1147980-mRNA-1
chr7_4	CDS	27754743	27754802	27754743	ID=Msa1147980-mRNA-1:cds;Parent=Msa1147980-mRNA-1
chr7_4	three_prime_UTR	27754803	27754820	27754803	ID=Msa1147980-mRNA-1:three_prime_utr;Parent=Msa1147980-mRNA-1
chr7_4	three_prime_UTR	27754921	27755252	27754921	ID=Msa1147980-mRNA-1:three_prime_utr;Parent=Msa1147980-mRNA-1

Gene Sequence

>Msa1147980

ATGTACAGCAACATCCTCGTGAACTGCTCCAACTGCCACACCCCCTTACAAGTCCCTCCCGGCGCCGCATCAATCCGCTGCGCCCTCTGTCATGCCATCACTCTCGTCGCCGACCCACGCGCTCTCCCTCCTCAACCCGCATCCTCTCCTCACGCGCCTCCTCCTCCTTCCCTTTACAACCACGCTCCGCCTGGTCCCTTACCTAACGTTCACGGCCGTAAAAAGGCCGTGATCGTCGGTATCTCGTATAAATTCTCCCGTCATGAACTTAAGGGTTGCATCAATGACGCTAAATGCATGCGCTACCTTCTTATCAATAAATACAATTTCCCTGATTCTTCCATTATTATGCTCACTGAAGAAGAAGACCCTCATGGCCCCAAATTTCCAAACAAGCACAACATCAGGATGGCAATGTTTTGGCTTGCACAAGGATGTCAACCTGGAGACTCCCTTGTTTTTCATTATTCTGGTCATGGATCCCAGCAAAGGAACTATAATGGTGAAGAAGCTGATGGTTTTGATGAAACTATATGTCCTTTAGATTTTGAAACACAGGGTATGATAGTTGATGATGAGATCAATGCAACGCTTGTAAGACCTCTTCCTCATGGGGTTAGGCTGCATGCACTAATTGATGCCTGTCATAGTGGCACTGTCATGGATTTGCCATTTCTTTGCAGAATGACCAGTCGTGGACAATATGTATGGGAAGACCATCGCCCTAGGTCAGGTGTGTGGAAGGGATCAAATGGTGGAGAAGTTATATGCTTTAGTGGATGTGATGATCATCAAACTTCTGCAGATACATCTGCGCTATCAAAAATTACATCAACTGGAGCCATGACGTTTTGCTTCATCCAAGCTGTAGAGCGCTCTGGTCCAGGGGCCACATATGGCACCATTCTTACTTCAATGCGCAGTGCCATAAAAAATGCTGGTAGCGGTGGTAGTGGGGGCGGCGATGTGGTAACATCTCTTATTTCCATGCTTTTGACCGGAGGTAGTCTTACCGCTGGTGGGCTGAGACAGGAACCGCAGTTAACAGCTTGCGAAGCATTCGACGTGTATAGAAAACCTTTCTCATTATGA

Protein sequence

>Msa1147980

MYSNILVNCSNCHTPLQVPPGAASIRCALCHAITLVADPRALPPQPASSPHAPPPPSLYNHAPPGPLPNVHGRKKAVIVGISYKFSRHELKGCINDAKCMRYLLINKYNFPDSSIIMLTEEEDPHGPKFPNKHNIRMAMFWLAQGCQPGDSLVFHYSGHGSQQRNYNGEEADGFDETICPLDFETQGMIVDDEINATLVRPLPHGVRLHALIDACHSGTVMDLPFLCRMTSRGQYVWEDHRPRSGVWKGSNGGEVICFSGCDDHQTSADTSALSKITSTGAMTFCFIQAVERSGPGATYGTILTSMRSAIKNAGSGGSGGGDVVTSLISMLLTGGSLTAGGLRQEPQLTACEAFDVYRKPFSL*