Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021120 | RHN74087.1 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 6.28e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021120 | A0A396JG31 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 3.00e-34 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021120 | Msa0032840 | -0.802662 | 5.044568e-49 | -8.615850e-47 |
| Msa0021120 | Msa0113860 | 0.955750 | 1.475837e-113 | -8.615850e-47 |
| Msa0021120 | Msa0480980 | 0.806775 | 6.984157e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0021120 | MtrunA17_Chr2g0306141 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 5.78e-38 | 127 |
| Msa0021120 | MtrunA17_Chr8g0341191 | 56.627 | 83 | 36 | 0 | 1 | 83 | 656 | 738 | 2.97e-28 | 109 |
| Msa0021120 | MtrunA17_Chr8g0381211 | 53.571 | 84 | 38 | 1 | 1 | 84 | 267 | 349 | 5.96e-26 | 102 |
| Msa0021120 | MtrunA17_Chr1g0171261 | 56.627 | 83 | 36 | 0 | 1 | 83 | 176 | 258 | 2.05e-25 | 98.6 |
| Msa0021120 | MtrunA17_Chr8g0336101 | 49.438 | 89 | 40 | 2 | 2 | 85 | 35 | 123 | 3.89e-22 | 88.6 |
| Msa0021120 | MtrunA17_Chr8g0352741 | 48.235 | 85 | 44 | 0 | 1 | 85 | 147 | 231 | 1.39e-21 | 89.0 |
| Msa0021120 | MtrunA17_Chr2g0296541 | 59.091 | 66 | 26 | 1 | 18 | 83 | 26 | 90 | 1.85e-21 | 85.1 |
| Msa0021120 | MtrunA17_Chr4g0058441 | 47.059 | 85 | 45 | 0 | 1 | 85 | 275 | 359 | 2.61e-21 | 89.4 |
| Msa0021120 | MtrunA17_Chr5g0423411 | 53.165 | 79 | 37 | 0 | 1 | 79 | 330 | 408 | 3.08e-20 | 86.7 |
| Msa0021120 | MtrunA17_Chr3g0143071 | 50.667 | 75 | 37 | 0 | 11 | 85 | 116 | 190 | 9.11e-20 | 83.2 |
| Msa0021120 | MtrunA17_Chr8g0383421 | 53.425 | 73 | 34 | 0 | 11 | 83 | 14 | 86 | 1.42e-19 | 80.5 |
| Msa0021120 | MtrunA17_Chr8g0381671 | 45.882 | 85 | 46 | 0 | 1 | 85 | 2 | 86 | 1.54e-19 | 79.0 |
| Msa0021120 | MtrunA17_Chr8g0354181 | 45.238 | 84 | 46 | 0 | 2 | 85 | 67 | 150 | 2.96e-19 | 82.4 |
| Msa0021120 | MtrunA17_Chr3g0139931 | 39.560 | 91 | 55 | 0 | 1 | 91 | 128 | 218 | 1.21e-18 | 80.9 |
| Msa0021120 | MtrunA17_Chr5g0411291 | 45.570 | 79 | 43 | 0 | 7 | 85 | 447 | 525 | 6.61e-18 | 79.7 |
| Msa0021120 | MtrunA17_Chr2g0328151 | 54.412 | 68 | 31 | 0 | 18 | 85 | 1 | 68 | 9.23e-18 | 75.9 |
| Msa0021120 | MtrunA17_Chr8g0352271 | 46.341 | 82 | 43 | 1 | 1 | 82 | 130 | 210 | 1.97e-17 | 75.9 |
| Msa0021120 | MtrunA17_Chr2g0297221 | 45.946 | 74 | 40 | 0 | 15 | 88 | 30 | 103 | 3.23e-17 | 73.6 |
| Msa0021120 | MtrunA17_Chr4g0020731 | 44.928 | 69 | 37 | 1 | 16 | 84 | 647 | 714 | 8.51e-14 | 68.2 |
| Msa0021120 | MtrunA17_Chr7g0255341 | 45.455 | 66 | 35 | 1 | 18 | 83 | 2 | 66 | 1.90e-13 | 64.7 |
| Msa0021120 | MtrunA17_Chr5g0430981 | 44.776 | 67 | 36 | 1 | 18 | 84 | 81 | 146 | 6.96e-13 | 64.3 |
| Msa0021120 | MtrunA17_Chr5g0430691 | 45.588 | 68 | 36 | 1 | 18 | 85 | 195 | 261 | 8.20e-13 | 64.7 |
| Msa0021120 | MtrunA17_Chr7g0247411 | 48.485 | 66 | 33 | 1 | 18 | 83 | 111 | 175 | 5.14e-12 | 61.2 |
| Msa0021120 | MtrunA17_Chr4g0019431 | 40.299 | 67 | 38 | 2 | 18 | 84 | 228 | 292 | 5.87e-12 | 62.4 |
| Msa0021120 | MtrunA17_Chr7g0273511 | 39.706 | 68 | 40 | 1 | 18 | 85 | 117 | 183 | 3.32e-11 | 59.7 |
| Msa0021120 | MtrunA17_Chr1g0163851 | 37.838 | 74 | 45 | 1 | 12 | 85 | 2 | 74 | 4.20e-11 | 58.5 |
| Msa0021120 | MtrunA17_Chr4g0002791 | 41.667 | 72 | 38 | 2 | 8 | 76 | 386 | 456 | 5.00e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCGTCAAAAGTGAATT+TGG | 0.285290 | 1_1:-37316020 | Msa0021120:CDS |
| GGTACAGAGGAGGTTGAGGC+TGG | 0.321039 | 1_1:-37315561 | Msa0021120:intron |
| ACACAATTTAAAGAAGCTTC+TGG | 0.356617 | 1_1:+37315977 | None:intergenic |
| TTCAAATATTTGGAAAAGTC+CGG | 0.377301 | 1_1:-37316089 | Msa0021120:CDS |
| AATCTGCTGTTATACAAAAC+AGG | 0.430844 | 1_1:+37315442 | None:intergenic |
| GCTTGAGGAGAGAACGATAT+CGG | 0.453203 | 1_1:-37316131 | Msa0021120:CDS |
| TTCGCCTCGGAGGTGTGGCA+AGG | 0.494165 | 1_1:-37315902 | Msa0021120:intron |
| CCAAAGTGGTGGCCTTCACT+TGG | 0.496813 | 1_1:-37316060 | Msa0021120:CDS |
| TATTTGAAAACACCTTACCT+TGG | 0.502193 | 1_1:+37316104 | None:intergenic |
| TGTTCTGCTGTATTGCTGTT+CGG | 0.504143 | 1_1:-37315506 | Msa0021120:CDS |
| TACAGAGGAGGTTGAGGCTG+GGG | 0.504620 | 1_1:-37315559 | Msa0021120:intron |
| CCAAGTGAAGGCCACCACTT+TGG | 0.507605 | 1_1:+37316060 | None:intergenic |
| GCCACCACTTTGGACGGTGC+CGG | 0.511725 | 1_1:+37316070 | None:intergenic |
| GAGGTTGAGGCTGGGGTATG+CGG | 0.515446 | 1_1:-37315552 | Msa0021120:CDS |
| TATTCACTGTGTGTTCGCCT+CGG | 0.516681 | 1_1:-37315915 | Msa0021120:CDS |
| GTTGGAGGGTAGAATGCTTG+AGG | 0.532820 | 1_1:-37316146 | None:intergenic |
| TTTCGGTACAGAGGAGGTTG+AGG | 0.541311 | 1_1:-37315565 | Msa0021120:intron |
| GTACAGAGGAGGTTGAGGCT+GGG | 0.555108 | 1_1:-37315560 | Msa0021120:intron |
| TCCGGCACCGTCCAAAGTGG+TGG | 0.573587 | 1_1:-37316071 | Msa0021120:CDS |
| GATATCGGAGGTCCAAGGTA+AGG | 0.575684 | 1_1:-37316116 | Msa0021120:CDS |
| GTGTGAGGGGAGGATTGAGT+CGG | 0.578769 | 1_1:-37315951 | Msa0021120:CDS |
| GTGAAGGCCACCACTTTGGA+CGG | 0.585220 | 1_1:+37316064 | None:intergenic |
| ACAAAACAGAAACATGAGGC+TGG | 0.589122 | 1_1:+37315477 | None:intergenic |
| GTGTGTTCGCCTCGGAGGTG+TGG | 0.598396 | 1_1:-37315907 | Msa0021120:CDS |
| TCACTGTGTGTTCGCCTCGG+AGG | 0.622109 | 1_1:-37315912 | Msa0021120:CDS |
| AGAACGATATCGGAGGTCCA+AGG | 0.641544 | 1_1:-37316121 | Msa0021120:CDS |
| AAGTCCGGCACCGTCCAAAG+TGG | 0.652335 | 1_1:-37316074 | Msa0021120:CDS |
| TCAGCAATAGCAAATACAAG+AGG | 0.655250 | 1_1:+37315351 | None:intergenic |
| CAATTTAAAGAAGCTTCTGG+CGG | 0.666587 | 1_1:+37315980 | None:intergenic |
| AGCAACAAAACAGAAACATG+AGG | 0.696581 | 1_1:+37315473 | None:intergenic |
| TGAGGAGAGAACGATATCGG+AGG | 0.710667 | 1_1:-37316128 | Msa0021120:CDS |
| AAAACCTTGCCACACCTCCG+AGG | 0.712134 | 1_1:+37315898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTAATAATGTAATGT+GGG | - | chr1_1:37315752-37315771 | Msa0021120:intron | 15.0% |
| !!! | ATTTTTAATAATGTAATGTG+GGG | - | chr1_1:37315753-37315772 | Msa0021120:intron | 15.0% |
| !!! | CATTTTTAATAATGTAATGT+GGG | - | chr1_1:37315752-37315771 | Msa0021120:intron | 15.0% |
| !!! | ATTTTTAATAATGTAATGTG+GGG | - | chr1_1:37315753-37315772 | Msa0021120:intron | 15.0% |
| !!! | GCATTTTTAATAATGTAATG+TGG | - | chr1_1:37315751-37315770 | Msa0021120:intron | 20.0% |
| !!! | GCATTTTTAATAATGTAATG+TGG | - | chr1_1:37315751-37315770 | Msa0021120:intron | 20.0% |
| !!! | GTAAGGTGTTTTCAAATATT+TGG | - | chr1_1:37315372-37315391 | Msa0021120:CDS | 25.0% |
| ! | TTCAAATATTTGGAAAAGTC+CGG | - | chr1_1:37315382-37315401 | Msa0021120:CDS | 25.0% |
| !! | TTTAAATTGTGTTTTGTGTG+AGG | - | chr1_1:37315505-37315524 | Msa0021120:CDS | 25.0% |
| !! | TTAAATTGTGTTTTGTGTGA+GGG | - | chr1_1:37315506-37315525 | Msa0021120:CDS | 25.0% |
| !!! | AGATTTTATTTCTGTTCTGT+TGG | - | chr1_1:37316047-37316066 | Msa0021120:CDS | 25.0% |
| !!! | GTAAGGTGTTTTCAAATATT+TGG | - | chr1_1:37315372-37315391 | Msa0021120:CDS | 25.0% |
| ! | TTCAAATATTTGGAAAAGTC+CGG | - | chr1_1:37315382-37315401 | Msa0021120:CDS | 25.0% |
| !! | TTTAAATTGTGTTTTGTGTG+AGG | - | chr1_1:37315505-37315524 | Msa0021120:CDS | 25.0% |
| !! | TTAAATTGTGTTTTGTGTGA+GGG | - | chr1_1:37315506-37315525 | Msa0021120:CDS | 25.0% |
| !!! | AGATTTTATTTCTGTTCTGT+TGG | - | chr1_1:37316047-37316066 | Msa0021120:CDS | 25.0% |
| TATTTGAAAACACCTTACCT+TGG | + | chr1_1:37315370-37315389 | None:intergenic | 30.0% | |
| AATACCGTCAAAAGTGAATT+TGG | - | chr1_1:37315451-37315470 | Msa0021120:CDS | 30.0% | |
| ACACAATTTAAAGAAGCTTC+TGG | + | chr1_1:37315497-37315516 | None:intergenic | 30.0% | |
| ! | TAAATTGTGTTTTGTGTGAG+GGG | - | chr1_1:37315507-37315526 | Msa0021120:CDS | 30.0% |
| AATCTGCTGTTATACAAAAC+AGG | + | chr1_1:37316032-37316051 | None:intergenic | 30.0% | |
| TATTTGAAAACACCTTACCT+TGG | + | chr1_1:37315370-37315389 | None:intergenic | 30.0% | |
| AATACCGTCAAAAGTGAATT+TGG | - | chr1_1:37315451-37315470 | Msa0021120:CDS | 30.0% | |
| ACACAATTTAAAGAAGCTTC+TGG | + | chr1_1:37315497-37315516 | None:intergenic | 30.0% | |
| ! | TAAATTGTGTTTTGTGTGAG+GGG | - | chr1_1:37315507-37315526 | Msa0021120:CDS | 30.0% |
| AATCTGCTGTTATACAAAAC+AGG | + | chr1_1:37316032-37316051 | None:intergenic | 30.0% | |
| ATGAAAAAGCTTCCAAGTGA+AGG | + | chr1_1:37315426-37315445 | None:intergenic | 35.0% | |
| CAATTTAAAGAAGCTTCTGG+CGG | + | chr1_1:37315494-37315513 | None:intergenic | 35.0% | |
| !! | GTAAAGGGTATCAGTTGATT+TGG | - | chr1_1:37315688-37315707 | Msa0021120:intron | 35.0% |
| AGCAACAAAACAGAAACATG+AGG | + | chr1_1:37316001-37316020 | None:intergenic | 35.0% | |
| !! | TCATGTTTCTGTTTTGTTGC+TGG | - | chr1_1:37316000-37316019 | Msa0021120:CDS | 35.0% |
| TCAGCAATAGCAAATACAAG+AGG | + | chr1_1:37316123-37316142 | None:intergenic | 35.0% | |
| ATGAAAAAGCTTCCAAGTGA+AGG | + | chr1_1:37315426-37315445 | None:intergenic | 35.0% | |
| CAATTTAAAGAAGCTTCTGG+CGG | + | chr1_1:37315494-37315513 | None:intergenic | 35.0% | |
| !! | GTAAAGGGTATCAGTTGATT+TGG | - | chr1_1:37315688-37315707 | Msa0021120:intron | 35.0% |
| AGCAACAAAACAGAAACATG+AGG | + | chr1_1:37316001-37316020 | None:intergenic | 35.0% | |
| !! | TCATGTTTCTGTTTTGTTGC+TGG | - | chr1_1:37316000-37316019 | Msa0021120:CDS | 35.0% |
| TCAGCAATAGCAAATACAAG+AGG | + | chr1_1:37316123-37316142 | None:intergenic | 35.0% | |
| !! | TGCGCCAAATTCACTTTTGA+CGG | + | chr1_1:37315458-37315477 | None:intergenic | 40.0% |
| ACAGATAAGGTGGTTCGTAA+AGG | - | chr1_1:37315672-37315691 | Msa0021120:intron | 40.0% | |
| CAGATAAGGTGGTTCGTAAA+GGG | - | chr1_1:37315673-37315692 | Msa0021120:intron | 40.0% | |
| AATAATGTAATGTGGGGCGT+CGG | - | chr1_1:37315759-37315778 | Msa0021120:intron | 40.0% | |
| !! | TTGAGTCGTTTTGAACTTGC+CGG | - | chr1_1:37315823-37315842 | Msa0021120:intron | 40.0% |
| ! | AGAGTGTCTTAGGCGTTAAT+GGG | - | chr1_1:37315879-37315898 | Msa0021120:intron | 40.0% |
| ! | ATGCGGTGTTTTTCTGTATG+CGG | - | chr1_1:37315936-37315955 | Msa0021120:CDS | 40.0% |
| ! | TGTTCTGCTGTATTGCTGTT+CGG | - | chr1_1:37315965-37315984 | Msa0021120:CDS | 40.0% |
| ACAAAACAGAAACATGAGGC+TGG | + | chr1_1:37315997-37316016 | None:intergenic | 40.0% | |
| ! | TGTGTCTGCTGTTGTGTTTT+TGG | - | chr1_1:37316077-37316096 | Msa0021120:CDS | 40.0% |
| ! | GTGTCTGCTGTTGTGTTTTT+GGG | - | chr1_1:37316078-37316097 | Msa0021120:CDS | 40.0% |
| !! | TGTCTGCTGTTGTGTTTTTG+GGG | - | chr1_1:37316079-37316098 | Msa0021120:CDS | 40.0% |
| !! | TGCGCCAAATTCACTTTTGA+CGG | + | chr1_1:37315458-37315477 | None:intergenic | 40.0% |
| ACAGATAAGGTGGTTCGTAA+AGG | - | chr1_1:37315672-37315691 | Msa0021120:intron | 40.0% | |
| CAGATAAGGTGGTTCGTAAA+GGG | - | chr1_1:37315673-37315692 | Msa0021120:intron | 40.0% | |
| AATAATGTAATGTGGGGCGT+CGG | - | chr1_1:37315759-37315778 | Msa0021120:intron | 40.0% | |
| !! | TTGAGTCGTTTTGAACTTGC+CGG | - | chr1_1:37315823-37315842 | Msa0021120:intron | 40.0% |
| ! | AGAGTGTCTTAGGCGTTAAT+GGG | - | chr1_1:37315879-37315898 | Msa0021120:intron | 40.0% |
| ! | ATGCGGTGTTTTTCTGTATG+CGG | - | chr1_1:37315936-37315955 | Msa0021120:CDS | 40.0% |
| ! | TGTTCTGCTGTATTGCTGTT+CGG | - | chr1_1:37315965-37315984 | Msa0021120:CDS | 40.0% |
| ACAAAACAGAAACATGAGGC+TGG | + | chr1_1:37315997-37316016 | None:intergenic | 40.0% | |
| ! | TGTGTCTGCTGTTGTGTTTT+TGG | - | chr1_1:37316077-37316096 | Msa0021120:CDS | 40.0% |
| ! | GTGTCTGCTGTTGTGTTTTT+GGG | - | chr1_1:37316078-37316097 | Msa0021120:CDS | 40.0% |
| !! | TGTCTGCTGTTGTGTTTTTG+GGG | - | chr1_1:37316079-37316098 | Msa0021120:CDS | 40.0% |
| GCTTGAGGAGAGAACGATAT+CGG | - | chr1_1:37315340-37315359 | Msa0021120:CDS | 45.0% | |
| ! | ATTGTGTTTTGTGTGAGGGG+AGG | - | chr1_1:37315510-37315529 | Msa0021120:CDS | 45.0% |
| TATTCACTGTGTGTTCGCCT+CGG | - | chr1_1:37315556-37315575 | Msa0021120:CDS | 45.0% | |
| !!! | GTGGCAAGGTTTTGTTGACT+TGG | - | chr1_1:37315583-37315602 | Msa0021120:intron | 45.0% |
| TCCCAGTGAACGCATAAGTT+CGG | + | chr1_1:37315633-37315652 | None:intergenic | 45.0% | |
| ! | ATGCCGCAGTTTGGAGTATT+TGG | - | chr1_1:37315712-37315731 | Msa0021120:intron | 45.0% |
| CCTCCAAATACTCCAAACTG+CGG | + | chr1_1:37315718-37315737 | None:intergenic | 45.0% | |
| ! | CGCAGTTTGGAGTATTTGGA+GGG | - | chr1_1:37315716-37315735 | Msa0021120:intron | 45.0% |
| ! | GCAGTTTGGAGTATTTGGAG+GGG | - | chr1_1:37315717-37315736 | Msa0021120:intron | 45.0% |
| ! | CAGTTTGGAGTATTTGGAGG+GGG | - | chr1_1:37315718-37315737 | Msa0021120:intron | 45.0% |
| CCATTCGTAAACAAACTCGC+CGG | + | chr1_1:37315845-37315864 | None:intergenic | 45.0% | |
| TAACGCCTAAGACACTCTCT+AGG | + | chr1_1:37315877-37315896 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCTTAGGCGTTAA+TGG | - | chr1_1:37315878-37315897 | Msa0021120:intron | 45.0% |
| AGGCGTTAATGGGACTGTTT+CGG | - | chr1_1:37315889-37315908 | Msa0021120:intron | 45.0% | |
| !! | GTTTCTGTTTTGTTGCTGGC+TGG | - | chr1_1:37316004-37316023 | Msa0021120:CDS | 45.0% |
| !!! | GTCTGCTGTTGTGTTTTTGG+GGG | - | chr1_1:37316080-37316099 | Msa0021120:CDS | 45.0% |
| !!! | GTTGTGTTTTTGGGGGTTTC+TGG | - | chr1_1:37316087-37316106 | Msa0021120:CDS | 45.0% |
| GCTTGAGGAGAGAACGATAT+CGG | - | chr1_1:37315340-37315359 | Msa0021120:CDS | 45.0% | |
| ! | ATTGTGTTTTGTGTGAGGGG+AGG | - | chr1_1:37315510-37315529 | Msa0021120:CDS | 45.0% |
| TATTCACTGTGTGTTCGCCT+CGG | - | chr1_1:37315556-37315575 | Msa0021120:CDS | 45.0% | |
| !!! | GTGGCAAGGTTTTGTTGACT+TGG | - | chr1_1:37315583-37315602 | Msa0021120:intron | 45.0% |
| TCCCAGTGAACGCATAAGTT+CGG | + | chr1_1:37315633-37315652 | None:intergenic | 45.0% | |
| ! | ATGCCGCAGTTTGGAGTATT+TGG | - | chr1_1:37315712-37315731 | Msa0021120:intron | 45.0% |
| CCTCCAAATACTCCAAACTG+CGG | + | chr1_1:37315718-37315737 | None:intergenic | 45.0% | |
| ! | CGCAGTTTGGAGTATTTGGA+GGG | - | chr1_1:37315716-37315735 | Msa0021120:intron | 45.0% |
| ! | GCAGTTTGGAGTATTTGGAG+GGG | - | chr1_1:37315717-37315736 | Msa0021120:intron | 45.0% |
| ! | CAGTTTGGAGTATTTGGAGG+GGG | - | chr1_1:37315718-37315737 | Msa0021120:intron | 45.0% |
| CCATTCGTAAACAAACTCGC+CGG | + | chr1_1:37315845-37315864 | None:intergenic | 45.0% | |
| TAACGCCTAAGACACTCTCT+AGG | + | chr1_1:37315877-37315896 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCTTAGGCGTTAA+TGG | - | chr1_1:37315878-37315897 | Msa0021120:intron | 45.0% |
| AGGCGTTAATGGGACTGTTT+CGG | - | chr1_1:37315889-37315908 | Msa0021120:intron | 45.0% | |
| !! | GTTTCTGTTTTGTTGCTGGC+TGG | - | chr1_1:37316004-37316023 | Msa0021120:CDS | 45.0% |
| !!! | GTCTGCTGTTGTGTTTTTGG+GGG | - | chr1_1:37316080-37316099 | Msa0021120:CDS | 45.0% |
| !!! | GTTGTGTTTTTGGGGGTTTC+TGG | - | chr1_1:37316087-37316106 | Msa0021120:CDS | 45.0% |
| TGAGGAGAGAACGATATCGG+AGG | - | chr1_1:37315343-37315362 | Msa0021120:CDS | 50.0% | |
| AGAACGATATCGGAGGTCCA+AGG | - | chr1_1:37315350-37315369 | Msa0021120:CDS | 50.0% | |
| GATATCGGAGGTCCAAGGTA+AGG | - | chr1_1:37315355-37315374 | Msa0021120:CDS | 50.0% | |
| CAGTGAACGCATAAGTTCGG+CGG | + | chr1_1:37315630-37315649 | None:intergenic | 50.0% | |
| GCCGAACTTATGCGTTCACT+GGG | - | chr1_1:37315629-37315648 | Msa0021120:intron | 50.0% | |
| ! | TATGCGTTCACTGGGAGTGT+TGG | - | chr1_1:37315637-37315656 | Msa0021120:intron | 50.0% |
| !! | GTTCACTGGGAGTGTTGGAA+CGG | - | chr1_1:37315642-37315661 | Msa0021120:intron | 50.0% |
| !! | TTCACTGGGAGTGTTGGAAC+GGG | - | chr1_1:37315643-37315662 | Msa0021120:intron | 50.0% |
| ! | TGATTTGGCATGCCGCAGTT+TGG | - | chr1_1:37315703-37315722 | Msa0021120:intron | 50.0% |
| ! | CCGCAGTTTGGAGTATTTGG+AGG | - | chr1_1:37315715-37315734 | Msa0021120:intron | 50.0% |
| ! | TTTGGAGTATTTGGAGGGGG+AGG | - | chr1_1:37315721-37315740 | Msa0021120:intron | 50.0% |
| GGAGTTAGTGGAGGCGATTA+AGG | - | chr1_1:37315780-37315799 | Msa0021120:intron | 50.0% | |
| !! | AGGCGATTAAGGTGTTGTCG+TGG | - | chr1_1:37315791-37315810 | Msa0021120:intron | 50.0% |
| !! | CGATTAAGGTGTTGTCGTGG+AGG | - | chr1_1:37315794-37315813 | Msa0021120:intron | 50.0% |
| ! | CCGGCGAGTTTGTTTACGAA+TGG | - | chr1_1:37315842-37315861 | Msa0021120:intron | 50.0% |
| !! | CGTGTCCTAGAGAGTGTCTT+AGG | - | chr1_1:37315869-37315888 | Msa0021120:intron | 50.0% |
| ATGGGACTGTTTCGGTACAG+AGG | - | chr1_1:37315897-37315916 | Msa0021120:intron | 50.0% | |
| TTTCGGTACAGAGGAGGTTG+AGG | - | chr1_1:37315906-37315925 | Msa0021120:CDS | 50.0% | |
| TGAGGAGAGAACGATATCGG+AGG | - | chr1_1:37315343-37315362 | Msa0021120:CDS | 50.0% | |
| AGAACGATATCGGAGGTCCA+AGG | - | chr1_1:37315350-37315369 | Msa0021120:CDS | 50.0% | |
| GATATCGGAGGTCCAAGGTA+AGG | - | chr1_1:37315355-37315374 | Msa0021120:CDS | 50.0% | |
| CAGTGAACGCATAAGTTCGG+CGG | + | chr1_1:37315630-37315649 | None:intergenic | 50.0% | |
| GCCGAACTTATGCGTTCACT+GGG | - | chr1_1:37315629-37315648 | Msa0021120:intron | 50.0% | |
| ! | TATGCGTTCACTGGGAGTGT+TGG | - | chr1_1:37315637-37315656 | Msa0021120:intron | 50.0% |
| !! | GTTCACTGGGAGTGTTGGAA+CGG | - | chr1_1:37315642-37315661 | Msa0021120:intron | 50.0% |
| !! | TTCACTGGGAGTGTTGGAAC+GGG | - | chr1_1:37315643-37315662 | Msa0021120:intron | 50.0% |
| ! | TGATTTGGCATGCCGCAGTT+TGG | - | chr1_1:37315703-37315722 | Msa0021120:intron | 50.0% |
| ! | CCGCAGTTTGGAGTATTTGG+AGG | - | chr1_1:37315715-37315734 | Msa0021120:intron | 50.0% |
| ! | TTTGGAGTATTTGGAGGGGG+AGG | - | chr1_1:37315721-37315740 | Msa0021120:intron | 50.0% |
| GGAGTTAGTGGAGGCGATTA+AGG | - | chr1_1:37315780-37315799 | Msa0021120:intron | 50.0% | |
| !! | AGGCGATTAAGGTGTTGTCG+TGG | - | chr1_1:37315791-37315810 | Msa0021120:intron | 50.0% |
| !! | CGATTAAGGTGTTGTCGTGG+AGG | - | chr1_1:37315794-37315813 | Msa0021120:intron | 50.0% |
| ! | CCGGCGAGTTTGTTTACGAA+TGG | - | chr1_1:37315842-37315861 | Msa0021120:intron | 50.0% |
| !! | CGTGTCCTAGAGAGTGTCTT+AGG | - | chr1_1:37315869-37315888 | Msa0021120:intron | 50.0% |
| ATGGGACTGTTTCGGTACAG+AGG | - | chr1_1:37315897-37315916 | Msa0021120:intron | 50.0% | |
| TTTCGGTACAGAGGAGGTTG+AGG | - | chr1_1:37315906-37315925 | Msa0021120:CDS | 50.0% | |
| GTGAAGGCCACCACTTTGGA+CGG | + | chr1_1:37315410-37315429 | None:intergenic | 55.0% | |
| CCAAGTGAAGGCCACCACTT+TGG | + | chr1_1:37315414-37315433 | None:intergenic | 55.0% | |
| CCAAAGTGGTGGCCTTCACT+TGG | - | chr1_1:37315411-37315430 | Msa0021120:CDS | 55.0% | |
| GTGTGAGGGGAGGATTGAGT+CGG | - | chr1_1:37315520-37315539 | Msa0021120:CDS | 55.0% | |
| AAAACCTTGCCACACCTCCG+AGG | + | chr1_1:37315576-37315595 | None:intergenic | 55.0% | |
| CGCCGAACTTATGCGTTCAC+TGG | - | chr1_1:37315628-37315647 | Msa0021120:intron | 55.0% | |
| !! | TCACTGGGAGTGTTGGAACG+GGG | - | chr1_1:37315644-37315663 | Msa0021120:intron | 55.0% |
| GAACGGGGCAGTGACAGATA+AGG | - | chr1_1:37315659-37315678 | Msa0021120:intron | 55.0% | |
| GGACTGTTTCGGTACAGAGG+AGG | - | chr1_1:37315900-37315919 | Msa0021120:intron | 55.0% | |
| GTACAGAGGAGGTTGAGGCT+GGG | - | chr1_1:37315911-37315930 | Msa0021120:CDS | 55.0% | |
| TACAGAGGAGGTTGAGGCTG+GGG | - | chr1_1:37315912-37315931 | Msa0021120:CDS | 55.0% | |
| GTGAAGGCCACCACTTTGGA+CGG | + | chr1_1:37315410-37315429 | None:intergenic | 55.0% | |
| CCAAGTGAAGGCCACCACTT+TGG | + | chr1_1:37315414-37315433 | None:intergenic | 55.0% | |
| CCAAAGTGGTGGCCTTCACT+TGG | - | chr1_1:37315411-37315430 | Msa0021120:CDS | 55.0% | |
| GTGTGAGGGGAGGATTGAGT+CGG | - | chr1_1:37315520-37315539 | Msa0021120:CDS | 55.0% | |
| AAAACCTTGCCACACCTCCG+AGG | + | chr1_1:37315576-37315595 | None:intergenic | 55.0% | |
| CGCCGAACTTATGCGTTCAC+TGG | - | chr1_1:37315628-37315647 | Msa0021120:intron | 55.0% | |
| !! | TCACTGGGAGTGTTGGAACG+GGG | - | chr1_1:37315644-37315663 | Msa0021120:intron | 55.0% |
| GAACGGGGCAGTGACAGATA+AGG | - | chr1_1:37315659-37315678 | Msa0021120:intron | 55.0% | |
| GGACTGTTTCGGTACAGAGG+AGG | - | chr1_1:37315900-37315919 | Msa0021120:intron | 55.0% | |
| GTACAGAGGAGGTTGAGGCT+GGG | - | chr1_1:37315911-37315930 | Msa0021120:CDS | 55.0% | |
| TACAGAGGAGGTTGAGGCTG+GGG | - | chr1_1:37315912-37315931 | Msa0021120:CDS | 55.0% | |
| AAGTCCGGCACCGTCCAAAG+TGG | - | chr1_1:37315397-37315416 | Msa0021120:CDS | 60.0% | |
| TCACTGTGTGTTCGCCTCGG+AGG | - | chr1_1:37315559-37315578 | Msa0021120:intron | 60.0% | |
| CGGGGCAGTGACAGATAAGG+TGG | - | chr1_1:37315662-37315681 | Msa0021120:intron | 60.0% | |
| !! | ATGTGGGGCGTCGGAGTTAG+TGG | - | chr1_1:37315768-37315787 | Msa0021120:intron | 60.0% |
| GGTACAGAGGAGGTTGAGGC+TGG | - | chr1_1:37315910-37315929 | Msa0021120:CDS | 60.0% | |
| GAGGTTGAGGCTGGGGTATG+CGG | - | chr1_1:37315919-37315938 | Msa0021120:CDS | 60.0% | |
| AAGTCCGGCACCGTCCAAAG+TGG | - | chr1_1:37315397-37315416 | Msa0021120:CDS | 60.0% | |
| TCACTGTGTGTTCGCCTCGG+AGG | - | chr1_1:37315559-37315578 | Msa0021120:intron | 60.0% | |
| CGGGGCAGTGACAGATAAGG+TGG | - | chr1_1:37315662-37315681 | Msa0021120:intron | 60.0% | |
| !! | ATGTGGGGCGTCGGAGTTAG+TGG | - | chr1_1:37315768-37315787 | Msa0021120:intron | 60.0% |
| GGTACAGAGGAGGTTGAGGC+TGG | - | chr1_1:37315910-37315929 | Msa0021120:CDS | 60.0% | |
| GAGGTTGAGGCTGGGGTATG+CGG | - | chr1_1:37315919-37315938 | Msa0021120:CDS | 60.0% | |
| TCCGGCACCGTCCAAAGTGG+TGG | - | chr1_1:37315400-37315419 | Msa0021120:CDS | 65.0% | |
| GCCACCACTTTGGACGGTGC+CGG | + | chr1_1:37315404-37315423 | None:intergenic | 65.0% | |
| GTGTGTTCGCCTCGGAGGTG+TGG | - | chr1_1:37315564-37315583 | Msa0021120:intron | 65.0% | |
| ! | TTCGCCTCGGAGGTGTGGCA+AGG | - | chr1_1:37315569-37315588 | Msa0021120:intron | 65.0% |
| !! | TGGGGCGTCGGAGTTAGTGG+AGG | - | chr1_1:37315771-37315790 | Msa0021120:intron | 65.0% |
| TCCGGCACCGTCCAAAGTGG+TGG | - | chr1_1:37315400-37315419 | Msa0021120:CDS | 65.0% | |
| GCCACCACTTTGGACGGTGC+CGG | + | chr1_1:37315404-37315423 | None:intergenic | 65.0% | |
| GTGTGTTCGCCTCGGAGGTG+TGG | - | chr1_1:37315564-37315583 | Msa0021120:intron | 65.0% | |
| ! | TTCGCCTCGGAGGTGTGGCA+AGG | - | chr1_1:37315569-37315588 | Msa0021120:intron | 65.0% |
| !! | TGGGGCGTCGGAGTTAGTGG+AGG | - | chr1_1:37315771-37315790 | Msa0021120:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 37315338 | 37316155 | 37315338 | ID=Msa0021120;Name=Msa0021120 |
| chr1_1 | mRNA | 37315338 | 37316155 | 37315338 | ID=Msa0021120-mRNA-1;Parent=Msa0021120;Name=Msa0021120-mRNA-1;_AED=0.96;_eAED=1.00;_QI=0|0|0|0.5|1|1|2|0|163 |
| chr1_1 | exon | 37315903 | 37316155 | 37315903 | ID=Msa0021120-mRNA-1:exon:11728;Parent=Msa0021120-mRNA-1 |
| chr1_1 | exon | 37315338 | 37315576 | 37315338 | ID=Msa0021120-mRNA-1:exon:11727;Parent=Msa0021120-mRNA-1 |
| chr1_1 | CDS | 37315903 | 37316155 | 37315903 | ID=Msa0021120-mRNA-1:cds;Parent=Msa0021120-mRNA-1 |
| chr1_1 | CDS | 37315338 | 37315576 | 37315338 | ID=Msa0021120-mRNA-1:cds;Parent=Msa0021120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
