Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113860 | RHN74087.1 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 6.28e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113860 | A0A396JG31 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 3.00e-34 | 127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0113860 | 0.801132 | 1.039864e-48 | -8.615850e-47 |
| Msa0021120 | Msa0113860 | 0.955750 | 1.475837e-113 | -8.615850e-47 |
| Msa0113860 | Msa0120330 | 0.806729 | 7.142493e-50 | -8.615850e-47 |
| Msa0113860 | Msa0157290 | 0.800536 | 1.376647e-48 | -8.615850e-47 |
| Msa0113860 | Msa0235890 | 0.801399 | 9.172912e-49 | -8.615850e-47 |
| Msa0113860 | Msa0296760 | 0.803591 | 3.241176e-49 | -8.615850e-47 |
| Msa0113860 | Msa0424920 | 0.804846 | 1.775431e-49 | -8.615850e-47 |
| Msa0113860 | Msa0532300 | 0.805348 | 1.393936e-49 | -8.615850e-47 |
| Msa0113860 | Msa0824680 | 0.802713 | 4.923716e-49 | -8.615850e-47 |
| Msa0113860 | Msa0880140 | 0.800567 | 1.356478e-48 | -8.615850e-47 |
| Msa0113860 | Msa1012810 | 0.803303 | 3.717630e-49 | -8.615850e-47 |
| Msa0113860 | Msa1367080 | 0.801331 | 9.471393e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113860 | MtrunA17_Chr2g0306141 | 75.000 | 84 | 21 | 0 | 1 | 84 | 1 | 84 | 5.78e-38 | 127 |
| Msa0113860 | MtrunA17_Chr8g0341191 | 56.627 | 83 | 36 | 0 | 1 | 83 | 656 | 738 | 2.97e-28 | 109 |
| Msa0113860 | MtrunA17_Chr8g0381211 | 53.571 | 84 | 38 | 1 | 1 | 84 | 267 | 349 | 5.96e-26 | 102 |
| Msa0113860 | MtrunA17_Chr1g0171261 | 56.627 | 83 | 36 | 0 | 1 | 83 | 176 | 258 | 2.05e-25 | 98.6 |
| Msa0113860 | MtrunA17_Chr8g0336101 | 49.438 | 89 | 40 | 2 | 2 | 85 | 35 | 123 | 3.89e-22 | 88.6 |
| Msa0113860 | MtrunA17_Chr8g0352741 | 48.235 | 85 | 44 | 0 | 1 | 85 | 147 | 231 | 1.39e-21 | 89.0 |
| Msa0113860 | MtrunA17_Chr2g0296541 | 59.091 | 66 | 26 | 1 | 18 | 83 | 26 | 90 | 1.85e-21 | 85.1 |
| Msa0113860 | MtrunA17_Chr4g0058441 | 47.059 | 85 | 45 | 0 | 1 | 85 | 275 | 359 | 2.61e-21 | 89.4 |
| Msa0113860 | MtrunA17_Chr5g0423411 | 53.165 | 79 | 37 | 0 | 1 | 79 | 330 | 408 | 3.08e-20 | 86.7 |
| Msa0113860 | MtrunA17_Chr3g0143071 | 50.667 | 75 | 37 | 0 | 11 | 85 | 116 | 190 | 9.11e-20 | 83.2 |
| Msa0113860 | MtrunA17_Chr8g0383421 | 53.425 | 73 | 34 | 0 | 11 | 83 | 14 | 86 | 1.42e-19 | 80.5 |
| Msa0113860 | MtrunA17_Chr8g0381671 | 45.882 | 85 | 46 | 0 | 1 | 85 | 2 | 86 | 1.54e-19 | 79.0 |
| Msa0113860 | MtrunA17_Chr8g0354181 | 45.238 | 84 | 46 | 0 | 2 | 85 | 67 | 150 | 2.96e-19 | 82.4 |
| Msa0113860 | MtrunA17_Chr3g0139931 | 39.560 | 91 | 55 | 0 | 1 | 91 | 128 | 218 | 1.21e-18 | 80.9 |
| Msa0113860 | MtrunA17_Chr5g0411291 | 45.570 | 79 | 43 | 0 | 7 | 85 | 447 | 525 | 6.61e-18 | 79.7 |
| Msa0113860 | MtrunA17_Chr2g0328151 | 54.412 | 68 | 31 | 0 | 18 | 85 | 1 | 68 | 9.23e-18 | 75.9 |
| Msa0113860 | MtrunA17_Chr8g0352271 | 46.341 | 82 | 43 | 1 | 1 | 82 | 130 | 210 | 1.97e-17 | 75.9 |
| Msa0113860 | MtrunA17_Chr2g0297221 | 45.946 | 74 | 40 | 0 | 15 | 88 | 30 | 103 | 3.23e-17 | 73.6 |
| Msa0113860 | MtrunA17_Chr4g0020731 | 44.928 | 69 | 37 | 1 | 16 | 84 | 647 | 714 | 8.51e-14 | 68.2 |
| Msa0113860 | MtrunA17_Chr7g0255341 | 45.455 | 66 | 35 | 1 | 18 | 83 | 2 | 66 | 1.90e-13 | 64.7 |
| Msa0113860 | MtrunA17_Chr5g0430981 | 44.776 | 67 | 36 | 1 | 18 | 84 | 81 | 146 | 6.96e-13 | 64.3 |
| Msa0113860 | MtrunA17_Chr5g0430691 | 45.588 | 68 | 36 | 1 | 18 | 85 | 195 | 261 | 8.20e-13 | 64.7 |
| Msa0113860 | MtrunA17_Chr7g0247411 | 48.485 | 66 | 33 | 1 | 18 | 83 | 111 | 175 | 5.14e-12 | 61.2 |
| Msa0113860 | MtrunA17_Chr4g0019431 | 40.299 | 67 | 38 | 2 | 18 | 84 | 228 | 292 | 5.87e-12 | 62.4 |
| Msa0113860 | MtrunA17_Chr7g0273511 | 39.706 | 68 | 40 | 1 | 18 | 85 | 117 | 183 | 3.32e-11 | 59.7 |
| Msa0113860 | MtrunA17_Chr1g0163851 | 37.838 | 74 | 45 | 1 | 12 | 85 | 2 | 74 | 4.20e-11 | 58.5 |
| Msa0113860 | MtrunA17_Chr4g0002791 | 41.667 | 72 | 38 | 2 | 8 | 76 | 386 | 456 | 5.00e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCGTCAAAAGTGAATT+TGG | 0.285290 | 1_3:-29972557 | Msa0113860:CDS |
| GGTACAGAGGAGGTTGAGGC+TGG | 0.321039 | 1_3:-29972098 | Msa0113860:intron |
| ACACAATTTAAAGAAGCTTC+TGG | 0.356617 | 1_3:+29972514 | None:intergenic |
| TTCAAATATTTGGAAAAGTC+CGG | 0.377301 | 1_3:-29972626 | Msa0113860:CDS |
| AATCTGCTGTTATACAAAAC+AGG | 0.430844 | 1_3:+29971979 | None:intergenic |
| GCTTGAGGAGAGAACGATAT+CGG | 0.453203 | 1_3:-29972668 | Msa0113860:CDS |
| TTCGCCTCGGAGGTGTGGCA+AGG | 0.494165 | 1_3:-29972439 | Msa0113860:intron |
| CCAAAGTGGTGGCCTTCACT+TGG | 0.496813 | 1_3:-29972597 | Msa0113860:CDS |
| TATTTGAAAACACCTTACCT+TGG | 0.502193 | 1_3:+29972641 | None:intergenic |
| TGTTCTGCTGTATTGCTGTT+CGG | 0.504143 | 1_3:-29972043 | Msa0113860:CDS |
| TACAGAGGAGGTTGAGGCTG+GGG | 0.504620 | 1_3:-29972096 | Msa0113860:intron |
| CCAAGTGAAGGCCACCACTT+TGG | 0.507605 | 1_3:+29972597 | None:intergenic |
| GCCACCACTTTGGACGGTGC+CGG | 0.511725 | 1_3:+29972607 | None:intergenic |
| GAGGTTGAGGCTGGGGTATG+CGG | 0.515446 | 1_3:-29972089 | Msa0113860:CDS |
| TATTCACTGTGTGTTCGCCT+CGG | 0.516681 | 1_3:-29972452 | Msa0113860:CDS |
| GTTGGAGGGTAGAATGCTTG+AGG | 0.532820 | 1_3:-29972683 | None:intergenic |
| TTTCGGTACAGAGGAGGTTG+AGG | 0.541311 | 1_3:-29972102 | Msa0113860:intron |
| GTACAGAGGAGGTTGAGGCT+GGG | 0.555108 | 1_3:-29972097 | Msa0113860:intron |
| TCCGGCACCGTCCAAAGTGG+TGG | 0.573587 | 1_3:-29972608 | Msa0113860:CDS |
| GATATCGGAGGTCCAAGGTA+AGG | 0.575684 | 1_3:-29972653 | Msa0113860:CDS |
| GTGTGAGGGGAGGATTGAGT+CGG | 0.578769 | 1_3:-29972488 | Msa0113860:CDS |
| GTGAAGGCCACCACTTTGGA+CGG | 0.585220 | 1_3:+29972601 | None:intergenic |
| ACAAAACAGAAACATGAGGC+TGG | 0.589122 | 1_3:+29972014 | None:intergenic |
| GTGTGTTCGCCTCGGAGGTG+TGG | 0.598396 | 1_3:-29972444 | Msa0113860:CDS |
| TCACTGTGTGTTCGCCTCGG+AGG | 0.622109 | 1_3:-29972449 | Msa0113860:CDS |
| AGAACGATATCGGAGGTCCA+AGG | 0.641544 | 1_3:-29972658 | Msa0113860:CDS |
| AAGTCCGGCACCGTCCAAAG+TGG | 0.652335 | 1_3:-29972611 | Msa0113860:CDS |
| TCAGCAATAGCAAATACAAG+AGG | 0.655250 | 1_3:+29971888 | None:intergenic |
| CAATTTAAAGAAGCTTCTGG+CGG | 0.666587 | 1_3:+29972517 | None:intergenic |
| AGCAACAAAACAGAAACATG+AGG | 0.696581 | 1_3:+29972010 | None:intergenic |
| TGAGGAGAGAACGATATCGG+AGG | 0.710667 | 1_3:-29972665 | Msa0113860:CDS |
| AAAACCTTGCCACACCTCCG+AGG | 0.712134 | 1_3:+29972435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTAATAATGTAATGT+GGG | - | chr1_3:29972289-29972308 | Msa0113860:intron | 15.0% |
| !!! | ATTTTTAATAATGTAATGTG+GGG | - | chr1_3:29972290-29972309 | Msa0113860:intron | 15.0% |
| !!! | CATTTTTAATAATGTAATGT+GGG | - | chr1_3:29972289-29972308 | Msa0113860:intron | 15.0% |
| !!! | ATTTTTAATAATGTAATGTG+GGG | - | chr1_3:29972290-29972309 | Msa0113860:intron | 15.0% |
| !!! | GCATTTTTAATAATGTAATG+TGG | - | chr1_3:29972288-29972307 | Msa0113860:intron | 20.0% |
| !!! | GCATTTTTAATAATGTAATG+TGG | - | chr1_3:29972288-29972307 | Msa0113860:intron | 20.0% |
| !!! | GTAAGGTGTTTTCAAATATT+TGG | - | chr1_3:29971909-29971928 | Msa0113860:CDS | 25.0% |
| ! | TTCAAATATTTGGAAAAGTC+CGG | - | chr1_3:29971919-29971938 | Msa0113860:CDS | 25.0% |
| !! | TTTAAATTGTGTTTTGTGTG+AGG | - | chr1_3:29972042-29972061 | Msa0113860:CDS | 25.0% |
| !! | TTAAATTGTGTTTTGTGTGA+GGG | - | chr1_3:29972043-29972062 | Msa0113860:CDS | 25.0% |
| !!! | AGATTTTATTTCTGTTCTGT+TGG | - | chr1_3:29972584-29972603 | Msa0113860:CDS | 25.0% |
| !!! | GTAAGGTGTTTTCAAATATT+TGG | - | chr1_3:29971909-29971928 | Msa0113860:CDS | 25.0% |
| ! | TTCAAATATTTGGAAAAGTC+CGG | - | chr1_3:29971919-29971938 | Msa0113860:CDS | 25.0% |
| !! | TTTAAATTGTGTTTTGTGTG+AGG | - | chr1_3:29972042-29972061 | Msa0113860:CDS | 25.0% |
| !! | TTAAATTGTGTTTTGTGTGA+GGG | - | chr1_3:29972043-29972062 | Msa0113860:CDS | 25.0% |
| !!! | AGATTTTATTTCTGTTCTGT+TGG | - | chr1_3:29972584-29972603 | Msa0113860:CDS | 25.0% |
| TATTTGAAAACACCTTACCT+TGG | + | chr1_3:29971907-29971926 | None:intergenic | 30.0% | |
| AATACCGTCAAAAGTGAATT+TGG | - | chr1_3:29971988-29972007 | Msa0113860:CDS | 30.0% | |
| ACACAATTTAAAGAAGCTTC+TGG | + | chr1_3:29972034-29972053 | None:intergenic | 30.0% | |
| ! | TAAATTGTGTTTTGTGTGAG+GGG | - | chr1_3:29972044-29972063 | Msa0113860:CDS | 30.0% |
| AATCTGCTGTTATACAAAAC+AGG | + | chr1_3:29972569-29972588 | None:intergenic | 30.0% | |
| TATTTGAAAACACCTTACCT+TGG | + | chr1_3:29971907-29971926 | None:intergenic | 30.0% | |
| AATACCGTCAAAAGTGAATT+TGG | - | chr1_3:29971988-29972007 | Msa0113860:CDS | 30.0% | |
| ACACAATTTAAAGAAGCTTC+TGG | + | chr1_3:29972034-29972053 | None:intergenic | 30.0% | |
| ! | TAAATTGTGTTTTGTGTGAG+GGG | - | chr1_3:29972044-29972063 | Msa0113860:CDS | 30.0% |
| AATCTGCTGTTATACAAAAC+AGG | + | chr1_3:29972569-29972588 | None:intergenic | 30.0% | |
| ATGAAAAAGCTTCCAAGTGA+AGG | + | chr1_3:29971963-29971982 | None:intergenic | 35.0% | |
| CAATTTAAAGAAGCTTCTGG+CGG | + | chr1_3:29972031-29972050 | None:intergenic | 35.0% | |
| !! | GTAAAGGGTATCAGTTGATT+TGG | - | chr1_3:29972225-29972244 | Msa0113860:intron | 35.0% |
| AGCAACAAAACAGAAACATG+AGG | + | chr1_3:29972538-29972557 | None:intergenic | 35.0% | |
| !! | TCATGTTTCTGTTTTGTTGC+TGG | - | chr1_3:29972537-29972556 | Msa0113860:CDS | 35.0% |
| TCAGCAATAGCAAATACAAG+AGG | + | chr1_3:29972660-29972679 | None:intergenic | 35.0% | |
| ATGAAAAAGCTTCCAAGTGA+AGG | + | chr1_3:29971963-29971982 | None:intergenic | 35.0% | |
| CAATTTAAAGAAGCTTCTGG+CGG | + | chr1_3:29972031-29972050 | None:intergenic | 35.0% | |
| !! | GTAAAGGGTATCAGTTGATT+TGG | - | chr1_3:29972225-29972244 | Msa0113860:intron | 35.0% |
| AGCAACAAAACAGAAACATG+AGG | + | chr1_3:29972538-29972557 | None:intergenic | 35.0% | |
| !! | TCATGTTTCTGTTTTGTTGC+TGG | - | chr1_3:29972537-29972556 | Msa0113860:CDS | 35.0% |
| TCAGCAATAGCAAATACAAG+AGG | + | chr1_3:29972660-29972679 | None:intergenic | 35.0% | |
| !! | TGCGCCAAATTCACTTTTGA+CGG | + | chr1_3:29971995-29972014 | None:intergenic | 40.0% |
| ACAGATAAGGTGGTTCGTAA+AGG | - | chr1_3:29972209-29972228 | Msa0113860:intron | 40.0% | |
| CAGATAAGGTGGTTCGTAAA+GGG | - | chr1_3:29972210-29972229 | Msa0113860:intron | 40.0% | |
| AATAATGTAATGTGGGGCGT+CGG | - | chr1_3:29972296-29972315 | Msa0113860:intron | 40.0% | |
| !! | TTGAGTCGTTTTGAACTTGC+CGG | - | chr1_3:29972360-29972379 | Msa0113860:intron | 40.0% |
| ! | AGAGTGTCTTAGGCGTTAAT+GGG | - | chr1_3:29972416-29972435 | Msa0113860:intron | 40.0% |
| ! | ATGCGGTGTTTTTCTGTATG+CGG | - | chr1_3:29972473-29972492 | Msa0113860:CDS | 40.0% |
| ! | TGTTCTGCTGTATTGCTGTT+CGG | - | chr1_3:29972502-29972521 | Msa0113860:CDS | 40.0% |
| ACAAAACAGAAACATGAGGC+TGG | + | chr1_3:29972534-29972553 | None:intergenic | 40.0% | |
| ! | TGTGTCTGCTGTTGTGTTTT+TGG | - | chr1_3:29972614-29972633 | Msa0113860:CDS | 40.0% |
| ! | GTGTCTGCTGTTGTGTTTTT+GGG | - | chr1_3:29972615-29972634 | Msa0113860:CDS | 40.0% |
| !! | TGTCTGCTGTTGTGTTTTTG+GGG | - | chr1_3:29972616-29972635 | Msa0113860:CDS | 40.0% |
| !! | TGCGCCAAATTCACTTTTGA+CGG | + | chr1_3:29971995-29972014 | None:intergenic | 40.0% |
| ACAGATAAGGTGGTTCGTAA+AGG | - | chr1_3:29972209-29972228 | Msa0113860:intron | 40.0% | |
| CAGATAAGGTGGTTCGTAAA+GGG | - | chr1_3:29972210-29972229 | Msa0113860:intron | 40.0% | |
| AATAATGTAATGTGGGGCGT+CGG | - | chr1_3:29972296-29972315 | Msa0113860:intron | 40.0% | |
| !! | TTGAGTCGTTTTGAACTTGC+CGG | - | chr1_3:29972360-29972379 | Msa0113860:intron | 40.0% |
| ! | AGAGTGTCTTAGGCGTTAAT+GGG | - | chr1_3:29972416-29972435 | Msa0113860:intron | 40.0% |
| ! | ATGCGGTGTTTTTCTGTATG+CGG | - | chr1_3:29972473-29972492 | Msa0113860:CDS | 40.0% |
| ! | TGTTCTGCTGTATTGCTGTT+CGG | - | chr1_3:29972502-29972521 | Msa0113860:CDS | 40.0% |
| ACAAAACAGAAACATGAGGC+TGG | + | chr1_3:29972534-29972553 | None:intergenic | 40.0% | |
| ! | TGTGTCTGCTGTTGTGTTTT+TGG | - | chr1_3:29972614-29972633 | Msa0113860:CDS | 40.0% |
| ! | GTGTCTGCTGTTGTGTTTTT+GGG | - | chr1_3:29972615-29972634 | Msa0113860:CDS | 40.0% |
| !! | TGTCTGCTGTTGTGTTTTTG+GGG | - | chr1_3:29972616-29972635 | Msa0113860:CDS | 40.0% |
| GCTTGAGGAGAGAACGATAT+CGG | - | chr1_3:29971877-29971896 | Msa0113860:CDS | 45.0% | |
| ! | ATTGTGTTTTGTGTGAGGGG+AGG | - | chr1_3:29972047-29972066 | Msa0113860:CDS | 45.0% |
| TATTCACTGTGTGTTCGCCT+CGG | - | chr1_3:29972093-29972112 | Msa0113860:CDS | 45.0% | |
| !!! | GTGGCAAGGTTTTGTTGACT+TGG | - | chr1_3:29972120-29972139 | Msa0113860:intron | 45.0% |
| TCCCAGTGAACGCATAAGTT+CGG | + | chr1_3:29972170-29972189 | None:intergenic | 45.0% | |
| ! | ATGCCGCAGTTTGGAGTATT+TGG | - | chr1_3:29972249-29972268 | Msa0113860:intron | 45.0% |
| CCTCCAAATACTCCAAACTG+CGG | + | chr1_3:29972255-29972274 | None:intergenic | 45.0% | |
| ! | CGCAGTTTGGAGTATTTGGA+GGG | - | chr1_3:29972253-29972272 | Msa0113860:intron | 45.0% |
| ! | GCAGTTTGGAGTATTTGGAG+GGG | - | chr1_3:29972254-29972273 | Msa0113860:intron | 45.0% |
| ! | CAGTTTGGAGTATTTGGAGG+GGG | - | chr1_3:29972255-29972274 | Msa0113860:intron | 45.0% |
| CCATTCGTAAACAAACTCGC+CGG | + | chr1_3:29972382-29972401 | None:intergenic | 45.0% | |
| TAACGCCTAAGACACTCTCT+AGG | + | chr1_3:29972414-29972433 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCTTAGGCGTTAA+TGG | - | chr1_3:29972415-29972434 | Msa0113860:intron | 45.0% |
| AGGCGTTAATGGGACTGTTT+CGG | - | chr1_3:29972426-29972445 | Msa0113860:intron | 45.0% | |
| !! | GTTTCTGTTTTGTTGCTGGC+TGG | - | chr1_3:29972541-29972560 | Msa0113860:CDS | 45.0% |
| !!! | GTCTGCTGTTGTGTTTTTGG+GGG | - | chr1_3:29972617-29972636 | Msa0113860:CDS | 45.0% |
| !!! | GTTGTGTTTTTGGGGGTTTC+TGG | - | chr1_3:29972624-29972643 | Msa0113860:CDS | 45.0% |
| GCTTGAGGAGAGAACGATAT+CGG | - | chr1_3:29971877-29971896 | Msa0113860:CDS | 45.0% | |
| ! | ATTGTGTTTTGTGTGAGGGG+AGG | - | chr1_3:29972047-29972066 | Msa0113860:CDS | 45.0% |
| TATTCACTGTGTGTTCGCCT+CGG | - | chr1_3:29972093-29972112 | Msa0113860:CDS | 45.0% | |
| !!! | GTGGCAAGGTTTTGTTGACT+TGG | - | chr1_3:29972120-29972139 | Msa0113860:intron | 45.0% |
| TCCCAGTGAACGCATAAGTT+CGG | + | chr1_3:29972170-29972189 | None:intergenic | 45.0% | |
| ! | ATGCCGCAGTTTGGAGTATT+TGG | - | chr1_3:29972249-29972268 | Msa0113860:intron | 45.0% |
| CCTCCAAATACTCCAAACTG+CGG | + | chr1_3:29972255-29972274 | None:intergenic | 45.0% | |
| ! | CGCAGTTTGGAGTATTTGGA+GGG | - | chr1_3:29972253-29972272 | Msa0113860:intron | 45.0% |
| ! | GCAGTTTGGAGTATTTGGAG+GGG | - | chr1_3:29972254-29972273 | Msa0113860:intron | 45.0% |
| ! | CAGTTTGGAGTATTTGGAGG+GGG | - | chr1_3:29972255-29972274 | Msa0113860:intron | 45.0% |
| CCATTCGTAAACAAACTCGC+CGG | + | chr1_3:29972382-29972401 | None:intergenic | 45.0% | |
| TAACGCCTAAGACACTCTCT+AGG | + | chr1_3:29972414-29972433 | None:intergenic | 45.0% | |
| !! | GAGAGTGTCTTAGGCGTTAA+TGG | - | chr1_3:29972415-29972434 | Msa0113860:intron | 45.0% |
| AGGCGTTAATGGGACTGTTT+CGG | - | chr1_3:29972426-29972445 | Msa0113860:intron | 45.0% | |
| !! | GTTTCTGTTTTGTTGCTGGC+TGG | - | chr1_3:29972541-29972560 | Msa0113860:CDS | 45.0% |
| !!! | GTCTGCTGTTGTGTTTTTGG+GGG | - | chr1_3:29972617-29972636 | Msa0113860:CDS | 45.0% |
| !!! | GTTGTGTTTTTGGGGGTTTC+TGG | - | chr1_3:29972624-29972643 | Msa0113860:CDS | 45.0% |
| TGAGGAGAGAACGATATCGG+AGG | - | chr1_3:29971880-29971899 | Msa0113860:CDS | 50.0% | |
| AGAACGATATCGGAGGTCCA+AGG | - | chr1_3:29971887-29971906 | Msa0113860:CDS | 50.0% | |
| GATATCGGAGGTCCAAGGTA+AGG | - | chr1_3:29971892-29971911 | Msa0113860:CDS | 50.0% | |
| CAGTGAACGCATAAGTTCGG+CGG | + | chr1_3:29972167-29972186 | None:intergenic | 50.0% | |
| GCCGAACTTATGCGTTCACT+GGG | - | chr1_3:29972166-29972185 | Msa0113860:intron | 50.0% | |
| ! | TATGCGTTCACTGGGAGTGT+TGG | - | chr1_3:29972174-29972193 | Msa0113860:intron | 50.0% |
| !! | GTTCACTGGGAGTGTTGGAA+CGG | - | chr1_3:29972179-29972198 | Msa0113860:intron | 50.0% |
| !! | TTCACTGGGAGTGTTGGAAC+GGG | - | chr1_3:29972180-29972199 | Msa0113860:intron | 50.0% |
| ! | TGATTTGGCATGCCGCAGTT+TGG | - | chr1_3:29972240-29972259 | Msa0113860:intron | 50.0% |
| ! | CCGCAGTTTGGAGTATTTGG+AGG | - | chr1_3:29972252-29972271 | Msa0113860:intron | 50.0% |
| ! | TTTGGAGTATTTGGAGGGGG+AGG | - | chr1_3:29972258-29972277 | Msa0113860:intron | 50.0% |
| GGAGTTAGTGGAGGCGATTA+AGG | - | chr1_3:29972317-29972336 | Msa0113860:intron | 50.0% | |
| !! | AGGCGATTAAGGTGTTGTCG+TGG | - | chr1_3:29972328-29972347 | Msa0113860:intron | 50.0% |
| !! | CGATTAAGGTGTTGTCGTGG+AGG | - | chr1_3:29972331-29972350 | Msa0113860:intron | 50.0% |
| ! | CCGGCGAGTTTGTTTACGAA+TGG | - | chr1_3:29972379-29972398 | Msa0113860:intron | 50.0% |
| !! | CGTGTCCTAGAGAGTGTCTT+AGG | - | chr1_3:29972406-29972425 | Msa0113860:intron | 50.0% |
| ATGGGACTGTTTCGGTACAG+AGG | - | chr1_3:29972434-29972453 | Msa0113860:intron | 50.0% | |
| TTTCGGTACAGAGGAGGTTG+AGG | - | chr1_3:29972443-29972462 | Msa0113860:CDS | 50.0% | |
| TGAGGAGAGAACGATATCGG+AGG | - | chr1_3:29971880-29971899 | Msa0113860:CDS | 50.0% | |
| AGAACGATATCGGAGGTCCA+AGG | - | chr1_3:29971887-29971906 | Msa0113860:CDS | 50.0% | |
| GATATCGGAGGTCCAAGGTA+AGG | - | chr1_3:29971892-29971911 | Msa0113860:CDS | 50.0% | |
| CAGTGAACGCATAAGTTCGG+CGG | + | chr1_3:29972167-29972186 | None:intergenic | 50.0% | |
| GCCGAACTTATGCGTTCACT+GGG | - | chr1_3:29972166-29972185 | Msa0113860:intron | 50.0% | |
| ! | TATGCGTTCACTGGGAGTGT+TGG | - | chr1_3:29972174-29972193 | Msa0113860:intron | 50.0% |
| !! | GTTCACTGGGAGTGTTGGAA+CGG | - | chr1_3:29972179-29972198 | Msa0113860:intron | 50.0% |
| !! | TTCACTGGGAGTGTTGGAAC+GGG | - | chr1_3:29972180-29972199 | Msa0113860:intron | 50.0% |
| ! | TGATTTGGCATGCCGCAGTT+TGG | - | chr1_3:29972240-29972259 | Msa0113860:intron | 50.0% |
| ! | CCGCAGTTTGGAGTATTTGG+AGG | - | chr1_3:29972252-29972271 | Msa0113860:intron | 50.0% |
| ! | TTTGGAGTATTTGGAGGGGG+AGG | - | chr1_3:29972258-29972277 | Msa0113860:intron | 50.0% |
| GGAGTTAGTGGAGGCGATTA+AGG | - | chr1_3:29972317-29972336 | Msa0113860:intron | 50.0% | |
| !! | AGGCGATTAAGGTGTTGTCG+TGG | - | chr1_3:29972328-29972347 | Msa0113860:intron | 50.0% |
| !! | CGATTAAGGTGTTGTCGTGG+AGG | - | chr1_3:29972331-29972350 | Msa0113860:intron | 50.0% |
| ! | CCGGCGAGTTTGTTTACGAA+TGG | - | chr1_3:29972379-29972398 | Msa0113860:intron | 50.0% |
| !! | CGTGTCCTAGAGAGTGTCTT+AGG | - | chr1_3:29972406-29972425 | Msa0113860:intron | 50.0% |
| ATGGGACTGTTTCGGTACAG+AGG | - | chr1_3:29972434-29972453 | Msa0113860:intron | 50.0% | |
| TTTCGGTACAGAGGAGGTTG+AGG | - | chr1_3:29972443-29972462 | Msa0113860:CDS | 50.0% | |
| GTGAAGGCCACCACTTTGGA+CGG | + | chr1_3:29971947-29971966 | None:intergenic | 55.0% | |
| CCAAGTGAAGGCCACCACTT+TGG | + | chr1_3:29971951-29971970 | None:intergenic | 55.0% | |
| CCAAAGTGGTGGCCTTCACT+TGG | - | chr1_3:29971948-29971967 | Msa0113860:CDS | 55.0% | |
| GTGTGAGGGGAGGATTGAGT+CGG | - | chr1_3:29972057-29972076 | Msa0113860:CDS | 55.0% | |
| AAAACCTTGCCACACCTCCG+AGG | + | chr1_3:29972113-29972132 | None:intergenic | 55.0% | |
| CGCCGAACTTATGCGTTCAC+TGG | - | chr1_3:29972165-29972184 | Msa0113860:intron | 55.0% | |
| !! | TCACTGGGAGTGTTGGAACG+GGG | - | chr1_3:29972181-29972200 | Msa0113860:intron | 55.0% |
| GAACGGGGCAGTGACAGATA+AGG | - | chr1_3:29972196-29972215 | Msa0113860:intron | 55.0% | |
| GGACTGTTTCGGTACAGAGG+AGG | - | chr1_3:29972437-29972456 | Msa0113860:intron | 55.0% | |
| GTACAGAGGAGGTTGAGGCT+GGG | - | chr1_3:29972448-29972467 | Msa0113860:CDS | 55.0% | |
| TACAGAGGAGGTTGAGGCTG+GGG | - | chr1_3:29972449-29972468 | Msa0113860:CDS | 55.0% | |
| GTGAAGGCCACCACTTTGGA+CGG | + | chr1_3:29971947-29971966 | None:intergenic | 55.0% | |
| CCAAGTGAAGGCCACCACTT+TGG | + | chr1_3:29971951-29971970 | None:intergenic | 55.0% | |
| CCAAAGTGGTGGCCTTCACT+TGG | - | chr1_3:29971948-29971967 | Msa0113860:CDS | 55.0% | |
| GTGTGAGGGGAGGATTGAGT+CGG | - | chr1_3:29972057-29972076 | Msa0113860:CDS | 55.0% | |
| AAAACCTTGCCACACCTCCG+AGG | + | chr1_3:29972113-29972132 | None:intergenic | 55.0% | |
| CGCCGAACTTATGCGTTCAC+TGG | - | chr1_3:29972165-29972184 | Msa0113860:intron | 55.0% | |
| !! | TCACTGGGAGTGTTGGAACG+GGG | - | chr1_3:29972181-29972200 | Msa0113860:intron | 55.0% |
| GAACGGGGCAGTGACAGATA+AGG | - | chr1_3:29972196-29972215 | Msa0113860:intron | 55.0% | |
| GGACTGTTTCGGTACAGAGG+AGG | - | chr1_3:29972437-29972456 | Msa0113860:intron | 55.0% | |
| GTACAGAGGAGGTTGAGGCT+GGG | - | chr1_3:29972448-29972467 | Msa0113860:CDS | 55.0% | |
| TACAGAGGAGGTTGAGGCTG+GGG | - | chr1_3:29972449-29972468 | Msa0113860:CDS | 55.0% | |
| AAGTCCGGCACCGTCCAAAG+TGG | - | chr1_3:29971934-29971953 | Msa0113860:CDS | 60.0% | |
| TCACTGTGTGTTCGCCTCGG+AGG | - | chr1_3:29972096-29972115 | Msa0113860:intron | 60.0% | |
| CGGGGCAGTGACAGATAAGG+TGG | - | chr1_3:29972199-29972218 | Msa0113860:intron | 60.0% | |
| !! | ATGTGGGGCGTCGGAGTTAG+TGG | - | chr1_3:29972305-29972324 | Msa0113860:intron | 60.0% |
| GGTACAGAGGAGGTTGAGGC+TGG | - | chr1_3:29972447-29972466 | Msa0113860:CDS | 60.0% | |
| GAGGTTGAGGCTGGGGTATG+CGG | - | chr1_3:29972456-29972475 | Msa0113860:CDS | 60.0% | |
| AAGTCCGGCACCGTCCAAAG+TGG | - | chr1_3:29971934-29971953 | Msa0113860:CDS | 60.0% | |
| TCACTGTGTGTTCGCCTCGG+AGG | - | chr1_3:29972096-29972115 | Msa0113860:intron | 60.0% | |
| CGGGGCAGTGACAGATAAGG+TGG | - | chr1_3:29972199-29972218 | Msa0113860:intron | 60.0% | |
| !! | ATGTGGGGCGTCGGAGTTAG+TGG | - | chr1_3:29972305-29972324 | Msa0113860:intron | 60.0% |
| GGTACAGAGGAGGTTGAGGC+TGG | - | chr1_3:29972447-29972466 | Msa0113860:CDS | 60.0% | |
| GAGGTTGAGGCTGGGGTATG+CGG | - | chr1_3:29972456-29972475 | Msa0113860:CDS | 60.0% | |
| TCCGGCACCGTCCAAAGTGG+TGG | - | chr1_3:29971937-29971956 | Msa0113860:CDS | 65.0% | |
| GCCACCACTTTGGACGGTGC+CGG | + | chr1_3:29971941-29971960 | None:intergenic | 65.0% | |
| GTGTGTTCGCCTCGGAGGTG+TGG | - | chr1_3:29972101-29972120 | Msa0113860:intron | 65.0% | |
| ! | TTCGCCTCGGAGGTGTGGCA+AGG | - | chr1_3:29972106-29972125 | Msa0113860:intron | 65.0% |
| !! | TGGGGCGTCGGAGTTAGTGG+AGG | - | chr1_3:29972308-29972327 | Msa0113860:intron | 65.0% |
| TCCGGCACCGTCCAAAGTGG+TGG | - | chr1_3:29971937-29971956 | Msa0113860:CDS | 65.0% | |
| GCCACCACTTTGGACGGTGC+CGG | + | chr1_3:29971941-29971960 | None:intergenic | 65.0% | |
| GTGTGTTCGCCTCGGAGGTG+TGG | - | chr1_3:29972101-29972120 | Msa0113860:intron | 65.0% | |
| ! | TTCGCCTCGGAGGTGTGGCA+AGG | - | chr1_3:29972106-29972125 | Msa0113860:intron | 65.0% |
| !! | TGGGGCGTCGGAGTTAGTGG+AGG | - | chr1_3:29972308-29972327 | Msa0113860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 29971875 | 29972692 | 29971875 | ID=Msa0113860;Name=Msa0113860 |
| chr1_3 | mRNA | 29971875 | 29972692 | 29971875 | ID=Msa0113860-mRNA-1;Parent=Msa0113860;Name=Msa0113860-mRNA-1;_AED=0.96;_eAED=1.00;_QI=0|0|0|0.5|1|1|2|0|163 |
| chr1_3 | exon | 29972440 | 29972692 | 29972440 | ID=Msa0113860-mRNA-1:exon:9976;Parent=Msa0113860-mRNA-1 |
| chr1_3 | exon | 29971875 | 29972113 | 29971875 | ID=Msa0113860-mRNA-1:exon:9975;Parent=Msa0113860-mRNA-1 |
| chr1_3 | CDS | 29972440 | 29972692 | 29972440 | ID=Msa0113860-mRNA-1:cds;Parent=Msa0113860-mRNA-1 |
| chr1_3 | CDS | 29971875 | 29972113 | 29971875 | ID=Msa0113860-mRNA-1:cds;Parent=Msa0113860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
