Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023340 | sp|Q9SJ62|WDL4_ARATH | 43.791 | 306 | 114 | 10 | 102 | 374 | 93 | 373 | 2.16e-50 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023340 | Msa0071100 | 0.825922 | 3.599583e-54 | -8.615850e-47 |
| Msa0023340 | Msa0162440 | 0.827017 | 1.972882e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023340 | MtrunA17_Chr1g0176611 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 838 |
| Msa0023340 | MtrunA17_Chr7g0267791 | 49.469 | 471 | 175 | 13 | 1 | 458 | 1 | 421 | 1.01e-111 | 335 |
| Msa0023340 | MtrunA17_Chr3g0137761 | 45.413 | 218 | 84 | 7 | 233 | 419 | 210 | 423 | 1.75e-40 | 150 |
| Msa0023340 | MtrunA17_Chr1g0149361 | 78.495 | 93 | 19 | 1 | 233 | 324 | 227 | 319 | 1.69e-39 | 148 |
| Msa0023340 | MtrunA17_Chr1g0187121 | 61.290 | 93 | 35 | 1 | 231 | 322 | 213 | 305 | 2.38e-27 | 112 |
| Msa0023340 | MtrunA17_Chr1g0190551 | 47.794 | 136 | 61 | 3 | 207 | 332 | 162 | 297 | 1.36e-25 | 107 |
| Msa0023340 | MtrunA17_Chr7g0274281 | 56.989 | 93 | 39 | 1 | 231 | 322 | 208 | 300 | 3.80e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023340 | AT2G35880.3 | 43.791 | 306 | 114 | 10 | 102 | 374 | 93 | 373 | 2.19e-51 | 180 |
| Msa0023340 | AT2G35880.2 | 43.791 | 306 | 114 | 10 | 102 | 374 | 93 | 373 | 2.19e-51 | 180 |
| Msa0023340 | AT2G35880.1 | 43.791 | 306 | 114 | 10 | 102 | 374 | 93 | 373 | 2.19e-51 | 180 |
| Msa0023340 | AT4G32330.2 | 46.448 | 183 | 89 | 5 | 149 | 322 | 113 | 295 | 6.54e-36 | 138 |
| Msa0023340 | AT4G32330.1 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.80e-35 | 137 |
| Msa0023340 | AT4G32330.4 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.80e-35 | 137 |
| Msa0023340 | AT4G32330.3 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.80e-35 | 137 |
| Msa0023340 | AT2G25480.1 | 70.330 | 91 | 26 | 1 | 233 | 322 | 181 | 271 | 7.83e-34 | 131 |
| Msa0023340 | AT2G25480.2 | 70.330 | 91 | 26 | 1 | 233 | 322 | 182 | 272 | 8.45e-34 | 131 |
| Msa0023340 | AT5G28646.3 | 47.794 | 136 | 68 | 2 | 187 | 319 | 34 | 169 | 8.27e-27 | 107 |
| Msa0023340 | AT5G28646.2 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.83e-26 | 106 |
| Msa0023340 | AT5G28646.1 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.83e-26 | 106 |
| Msa0023340 | AT3G04630.1 | 51.754 | 114 | 47 | 3 | 213 | 318 | 99 | 212 | 2.42e-25 | 105 |
| Msa0023340 | AT3G04630.3 | 51.754 | 114 | 47 | 3 | 213 | 318 | 103 | 216 | 2.61e-25 | 105 |
| Msa0023340 | AT3G04630.2 | 51.754 | 114 | 47 | 3 | 213 | 318 | 98 | 211 | 2.73e-25 | 105 |
| Msa0023340 | AT3G23090.5 | 53.448 | 116 | 47 | 2 | 212 | 320 | 167 | 282 | 4.32e-25 | 105 |
| Msa0023340 | AT3G23090.1 | 53.448 | 116 | 47 | 2 | 212 | 320 | 166 | 281 | 4.64e-25 | 105 |
| Msa0023340 | AT3G23090.4 | 53.448 | 116 | 47 | 2 | 212 | 320 | 202 | 317 | 6.94e-25 | 105 |
| Msa0023340 | AT3G23090.2 | 51.667 | 120 | 47 | 3 | 212 | 320 | 166 | 285 | 4.68e-24 | 103 |
| Msa0023340 | AT3G23090.3 | 51.667 | 120 | 47 | 3 | 212 | 320 | 202 | 321 | 7.20e-24 | 103 |
| Msa0023340 | AT1G54460.1 | 54.839 | 93 | 41 | 1 | 231 | 322 | 162 | 254 | 3.06e-21 | 94.7 |
| Msa0023340 | AT1G70950.1 | 55.000 | 80 | 33 | 2 | 218 | 296 | 313 | 390 | 2.04e-16 | 82.0 |
Find 94 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTCGGTGATTT+TGG | 0.078087 | 1_1:+44443018 | None:intergenic |
| TAGCTTCTTATTAAGAAATA+TGG | 0.189804 | 1_1:-44442326 | Msa0023340:three_prime_UTR |
| ACTTCATAGGATACAGTTTC+TGG | 0.228034 | 1_1:+44442616 | None:intergenic |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1_1:+44442689 | None:intergenic |
| TTATGGTACCTTGGAACTTT+TGG | 0.246711 | 1_1:+44444976 | None:intergenic |
| TAATGAAATAACTGGTAAAA+AGG | 0.248214 | 1_1:+44442534 | None:intergenic |
| GAAGTTGTGCCCTTCAAATT+TGG | 0.258397 | 1_1:+44444518 | None:intergenic |
| GGGTTGAGATGCTTCATTCT+TGG | 0.262885 | 1_1:+44445042 | None:intergenic |
| TGCCTCAGATGTCTGGCTTT+TGG | 0.269501 | 1_1:+44444117 | None:intergenic |
| TAAGCTAGCTTTCAATGAAT+TGG | 0.276026 | 1_1:+44446513 | None:intergenic |
| TTGCTATCAATTTCTACTTT+GGG | 0.283046 | 1_1:+44445022 | None:intergenic |
| GGTTGAGATGCTTCATTCTT+GGG | 0.299174 | 1_1:+44445043 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1_1:-44443144 | Msa0023340:intron |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1_1:-44442916 | Msa0023340:CDS |
| TTTCTGGTGTGGAAGCATTA+AGG | 0.334990 | 1_1:+44442632 | None:intergenic |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1_1:-44442854 | Msa0023340:CDS |
| GAAGATGAGAAGCATGTTAT+TGG | 0.347674 | 1_1:-44445130 | Msa0023340:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1_1:-44443174 | Msa0023340:CDS |
| GTTGCTATCAATTTCTACTT+TGG | 0.352478 | 1_1:+44445021 | None:intergenic |
| CACAATAATAATGAAATAAC+TGG | 0.358013 | 1_1:+44442526 | None:intergenic |
| ATCTCTCAAACAAGTTTAAG+AGG | 0.388144 | 1_1:-44446320 | Msa0023340:intron |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1_1:-44443394 | Msa0023340:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1_1:+44443225 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+CGG | 0.397619 | 1_1:+44443009 | None:intergenic |
| CTTCAAATTTGGTTTAACTT+TGG | 0.403096 | 1_1:+44444529 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1_1:+44443765 | None:intergenic |
| ATCTGAAAATGAAGTTGTTA+TGG | 0.408821 | 1_1:-44445152 | Msa0023340:CDS |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1_1:+44442954 | None:intergenic |
| ACATTGATGCCTCAGATGTC+TGG | 0.410213 | 1_1:+44444110 | None:intergenic |
| CTGATTTCGACGGGAATGTA+AGG | 0.413726 | 1_1:+44444459 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1_1:+44442943 | None:intergenic |
| CGCGGTCACGAAAACAGAAA+TGG | 0.415791 | 1_1:-44442827 | Msa0023340:CDS |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1_1:+44443726 | None:intergenic |
| AATGACAGTTACATATTTGA+GGG | 0.429031 | 1_1:-44447302 | Msa0023340:five_prime_UTR |
| CAAATTTGGTTTAACTTTGG+TGG | 0.435552 | 1_1:+44444532 | None:intergenic |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1_1:+44442944 | None:intergenic |
| AACTGAAGTTGGTGATACTA+AGG | 0.445260 | 1_1:+44446445 | None:intergenic |
| TTTATGTATGTGTTCTACCT+TGG | 0.453122 | 1_1:+44445099 | None:intergenic |
| CAATGACAGTTACATATTTG+AGG | 0.456998 | 1_1:-44447303 | Msa0023340:five_prime_UTR |
| GAGTTTAGATTGGTGTATCA+AGG | 0.458663 | 1_1:-44442585 | Msa0023340:exon |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1_1:-44443554 | Msa0023340:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1_1:-44442702 | Msa0023340:CDS |
| CGCCCAAAATCACCGAAGCT+TGG | 0.469539 | 1_1:-44443021 | Msa0023340:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1_1:-44442703 | Msa0023340:CDS |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1_1:+44443557 | None:intergenic |
| GTTGCTGTGGGAGTTTAGAT+TGG | 0.474271 | 1_1:-44442595 | Msa0023340:exon |
| CATTATTATTGTGAATATAG+AGG | 0.476292 | 1_1:-44442516 | Msa0023340:three_prime_UTR |
| CAGTTACATATTTGAGGGAG+TGG | 0.477152 | 1_1:-44447297 | Msa0023340:five_prime_UTR |
| AACTCCCACAGCAACTTCAT+AGG | 0.482114 | 1_1:+44442603 | None:intergenic |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1_1:+44443173 | None:intergenic |
| CAAAGTTAAACCAAATTTGA+AGG | 0.485184 | 1_1:-44444528 | Msa0023340:CDS |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1_1:+44443526 | None:intergenic |
| AATCACTGAGACCTCGTTTG+TGG | 0.511682 | 1_1:+44442789 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1_1:+44443167 | None:intergenic |
| TTCTTTGCAAAAGTGATTTG+TGG | 0.520058 | 1_1:+44446470 | None:intergenic |
| GTGATAGTTGAACTTGAAGA+TGG | 0.522631 | 1_1:+44446421 | None:intergenic |
| GTCAATTCATGTTAGGAACC+TGG | 0.523313 | 1_1:-44444593 | Msa0023340:intron |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1_1:-44443400 | Msa0023340:CDS |
| AAAGTTAAACCAAATTTGAA+GGG | 0.551958 | 1_1:-44444527 | Msa0023340:CDS |
| GGAATGTAAGGCTCTTTGAA+AGG | 0.559563 | 1_1:+44444471 | None:intergenic |
| TGTGACCATTTGCAGGACAA+TGG | 0.562193 | 1_1:-44445176 | Msa0023340:intron |
| CAAGACGAGCTGATTTCGAC+GGG | 0.570713 | 1_1:+44444450 | None:intergenic |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1_1:-44442923 | Msa0023340:CDS |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1_1:+44442849 | None:intergenic |
| TTGAAGATGGAAACTGAAGT+TGG | 0.581322 | 1_1:+44446434 | None:intergenic |
| ATACTATCTACCAGTTTGGA+AGG | 0.583340 | 1_1:-44444162 | Msa0023340:intron |
| AAGAAAGTTGACAAACTCAA+AGG | 0.583844 | 1_1:-44444345 | Msa0023340:CDS |
| ACAGTGTCCCTTCAATCAGA+AGG | 0.585170 | 1_1:+44442363 | None:intergenic |
| CCGAAGCTTGGAAGAAACAA+AGG | 0.587414 | 1_1:-44443009 | Msa0023340:CDS |
| TTGTGGAGAGAAAGCTCAAG+TGG | 0.589092 | 1_1:+44446487 | None:intergenic |
| GCTATCAGAAGTCTTACTCC+TGG | 0.593123 | 1_1:-44443575 | Msa0023340:intron |
| ATAGGATACAGTTTCTGGTG+TGG | 0.593998 | 1_1:+44442621 | None:intergenic |
| TGTATCCTATGAAGTTGCTG+TGG | 0.597144 | 1_1:-44442608 | Msa0023340:CDS |
| AGTCTTCTTAAGAATCCCAT+CGG | 0.599068 | 1_1:+44444409 | None:intergenic |
| GCTATGAAGAAAAGCACCGA+TGG | 0.607394 | 1_1:-44444425 | Msa0023340:CDS |
| TCAAGACGAGCTGATTTCGA+CGG | 0.610150 | 1_1:+44444449 | None:intergenic |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1_1:-44443510 | Msa0023340:intron |
| GCTAGCAAAGCATTGAGGTG+AGG | 0.629634 | 1_1:+44447357 | None:intergenic |
| CATAAAGAAGTTGAAGACAA+TGG | 0.630212 | 1_1:-44445082 | Msa0023340:CDS |
| ACAATGGAAACTCTAAACAA+AGG | 0.631858 | 1_1:-44444310 | Msa0023340:CDS |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1_1:-44442679 | Msa0023340:CDS |
| TATTCAGAAATATTAACAGA+AGG | 0.636984 | 1_1:+44442712 | None:intergenic |
| CTATGAAGAAAAGCACCGAT+GGG | 0.637449 | 1_1:-44444424 | Msa0023340:CDS |
| TGTCATGTCTTCCACAAACG+AGG | 0.638979 | 1_1:-44442800 | Msa0023340:CDS |
| GTATCCTATGAAGTTGCTGT+GGG | 0.642363 | 1_1:-44442607 | Msa0023340:CDS |
| TCTTGCTCAGAACAGTGTGT+TGG | 0.650728 | 1_1:-44442656 | Msa0023340:CDS |
| TGCCAAAAGCCAGACATCTG+AGG | 0.654628 | 1_1:-44444119 | Msa0023340:CDS |
| TAATCTGCAAGAGAAATCAA+AGG | 0.655226 | 1_1:-44443358 | Msa0023340:intron |
| AAAGTTGACAAACTCAAAGG+AGG | 0.655478 | 1_1:-44444342 | Msa0023340:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1_1:-44443560 | Msa0023340:CDS |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1_1:-44442845 | Msa0023340:CDS |
| AAATAGCTTTAAAAGCTCTG+AGG | 0.685220 | 1_1:-44444270 | Msa0023340:intron |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1_1:-44442929 | Msa0023340:CDS |
| TGTTATTGGTGAAACAACCA+AGG | 0.697770 | 1_1:-44445116 | Msa0023340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATATTTTAAAATAAG+AGG | + | chr1_1:44443847-44443866 | None:intergenic | 10.0% |
| !!! | TTTTAAAATATGAAAAGTTT+TGG | - | chr1_1:44443851-44443870 | Msa0023340:intron | 10.0% |
| !!! | TTCATTTAAAATACATTTTT+TGG | - | chr1_1:44444005-44444024 | Msa0023340:intron | 10.0% |
| !!! | TTTTTTTTTCTTTTGATTTT+TGG | - | chr1_1:44446428-44446447 | Msa0023340:five_prime_UTR | 10.0% |
| !!! | ATGAAAACAAAATATTGATT+TGG | + | chr1_1:44444890-44444909 | None:intergenic | 15.0% |
| !! | AAGAATTCATATATATCTTT+AGG | - | chr1_1:44445832-44445851 | Msa0023340:intron | 15.0% |
| !! | TTAAAATATTATGTCTCATT+AGG | - | chr1_1:44446012-44446031 | Msa0023340:intron | 15.0% |
| !! | AAATTTCATGAATCTATTAT+AGG | + | chr1_1:44446080-44446099 | None:intergenic | 15.0% |
| !! | AATATAAATACAACATCAGT+GGG | + | chr1_1:44442754-44442773 | None:intergenic | 20.0% |
| !! | AGAAATTAGTACTACTTTAT+TGG | + | chr1_1:44442799-44442818 | None:intergenic | 20.0% |
| !! | TTTCAAATGACATAAAACAT+TGG | + | chr1_1:44443021-44443040 | None:intergenic | 20.0% |
| !!! | TGTCATTTGAAATTTTTTGA+TGG | - | chr1_1:44443029-44443048 | Msa0023340:CDS | 20.0% |
| !!! | ATTTGAAATTTTTTGATGGT+TGG | - | chr1_1:44443033-44443052 | Msa0023340:CDS | 20.0% |
| !! | AATCAAAATAGCAAAAAAGA+TGG | + | chr1_1:44443475-44443494 | None:intergenic | 20.0% |
| !!! | AATTTTGATTAATCTCCTTA+AGG | + | chr1_1:44443701-44443720 | None:intergenic | 20.0% |
| !! | ATTAATCAAAATTACAGCAT+TGG | - | chr1_1:44443708-44443727 | Msa0023340:intron | 20.0% |
| !! | TTAATCAAAATTACAGCATT+GGG | - | chr1_1:44443709-44443728 | Msa0023340:intron | 20.0% |
| !! | GTAGTTCAAAAATATGATAA+AGG | + | chr1_1:44443879-44443898 | None:intergenic | 20.0% |
| !! | TAGCGTACATAAAAATTAAA+AGG | - | chr1_1:44444275-44444294 | Msa0023340:CDS | 20.0% |
| !! | TAAAAAAAAAGAAGTTAGCA+TGG | - | chr1_1:44444326-44444345 | Msa0023340:CDS | 20.0% |
| !! | ATATATTCCTAAAATGTGTA+TGG | + | chr1_1:44444359-44444378 | None:intergenic | 20.0% |
| !! | TAATTATGATACATTGCTTA+TGG | + | chr1_1:44444728-44444747 | None:intergenic | 20.0% |
| !! | AGTGTTATATGTATAACTTA+TGG | - | chr1_1:44444840-44444859 | Msa0023340:intron | 20.0% |
| !! | AAACTATCATGAAAATCTTA+TGG | - | chr1_1:44444933-44444952 | Msa0023340:intron | 20.0% |
| !! | AAAGTTAAACCAAATTTGAA+GGG | - | chr1_1:44445157-44445176 | Msa0023340:CDS | 20.0% |
| !!! | TAATTTAAAACGATACAGTT+TGG | + | chr1_1:44445612-44445631 | None:intergenic | 20.0% |
| !!! | AACTGTATCGTTTTAAATTA+TGG | - | chr1_1:44445612-44445631 | Msa0023340:intron | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | chr1_1:44446057-44446076 | None:intergenic | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | chr1_1:44446212-44446231 | None:intergenic | 20.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | chr1_1:44446617-44446636 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGA+AGG | + | chr1_1:44446975-44446994 | None:intergenic | 20.0% |
| !! | TAATGAAATAACTGGTAAAA+AGG | + | chr1_1:44447153-44447172 | None:intergenic | 20.0% |
| !! | CACAATAATAATGAAATAAC+TGG | + | chr1_1:44447161-44447180 | None:intergenic | 20.0% |
| !! | CATTATTATTGTGAATATAG+AGG | - | chr1_1:44447168-44447187 | Msa0023340:intron | 20.0% |
| !! | TAGCTTCTTATTAAGAAATA+TGG | - | chr1_1:44447358-44447377 | Msa0023340:five_prime_UTR | 20.0% |
| ! | AATGACAGTTACATATTTGA+GGG | - | chr1_1:44442382-44442401 | Msa0023340:three_prime_UTR | 25.0% |
| !!! | AATTGAAAGTTTTTGATGGT+TGG | + | chr1_1:44442501-44442520 | None:intergenic | 25.0% |
| !! | GGATAATTGAAAGTTTTTGA+TGG | + | chr1_1:44442505-44442524 | None:intergenic | 25.0% |
| !! | TTAACGTTTTGTGAAAATGA+AGG | - | chr1_1:44442701-44442720 | Msa0023340:CDS | 25.0% |
| ! | GAATATAAATACAACATCAG+TGG | + | chr1_1:44442755-44442774 | None:intergenic | 25.0% |
| ! | ATTAGTACTACTTTATTGGA+TGG | + | chr1_1:44442795-44442814 | None:intergenic | 25.0% |
| ! | GTAGTACTAATTTCTATTGT+TGG | - | chr1_1:44442804-44442823 | Msa0023340:CDS | 25.0% |
| ! | TGTACCTTTATTATGATGTT+TGG | - | chr1_1:44442920-44442939 | Msa0023340:CDS | 25.0% |
| ! | GTACCTTTATTATGATGTTT+GGG | - | chr1_1:44442921-44442940 | Msa0023340:CDS | 25.0% |
| ! | AATCCCAAACATCATAATAA+AGG | + | chr1_1:44442927-44442946 | None:intergenic | 25.0% |
| ! | AAAAAACATATATGTTGCAG+TGG | - | chr1_1:44442961-44442980 | Msa0023340:CDS | 25.0% |
| ! | ATTGACTGCAATCAATAAAA+TGG | + | chr1_1:44443100-44443119 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGTAAGTGCTTT+TGG | + | chr1_1:44443303-44443322 | None:intergenic | 25.0% |
| ! | AAGATGGAAAAAAATGCATA+TGG | + | chr1_1:44443459-44443478 | None:intergenic | 25.0% |
| !!! | TGATTAGTTTCATTGAATTG+TGG | - | chr1_1:44443502-44443521 | Msa0023340:intron | 25.0% |
| ! | AGAATTTGAATTCAGATTTG+TGG | - | chr1_1:44443624-44443643 | Msa0023340:intron | 25.0% |
| ! | ATCTTAGATCAGGTATTTAA+TGG | - | chr1_1:44444061-44444080 | Msa0023340:intron | 25.0% |
| ! | ATTTGATGAGATTAAGATTC+TGG | - | chr1_1:44444249-44444268 | Msa0023340:intron | 25.0% |
| ! | TTAAAAGGACTCAATAAAGT+TGG | - | chr1_1:44444290-44444309 | Msa0023340:CDS | 25.0% |
| !! | ACTTAAACCATACACATTTT+AGG | - | chr1_1:44444349-44444368 | Msa0023340:CDS | 25.0% |
| !! | TAGAATTATGCATAGTTTGT+TGG | - | chr1_1:44444384-44444403 | Msa0023340:CDS | 25.0% |
| ! | ATCTGAAAATGAAGTTGTTA+TGG | - | chr1_1:44444532-44444551 | Msa0023340:CDS | 25.0% |
| ! | TTGCTATCAATTTCTACTTT+GGG | + | chr1_1:44444665-44444684 | None:intergenic | 25.0% |
| ! | TTATATAGCAAATCCGTAAT+AGG | - | chr1_1:44444745-44444764 | Msa0023340:intron | 25.0% |
| !! | CTTCAAATTTGGTTTAACTT+TGG | + | chr1_1:44445158-44445177 | None:intergenic | 25.0% |
| ! | CAAAGTTAAACCAAATTTGA+AGG | - | chr1_1:44445156-44445175 | Msa0023340:CDS | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | chr1_1:44445479-44445498 | Msa0023340:intron | 25.0% |
| ! | TTTAGTAAATATTGGGAGTT+GGG | + | chr1_1:44445764-44445783 | None:intergenic | 25.0% |
| ! | ATTTAGTAAATATTGGGAGT+TGG | + | chr1_1:44445765-44445784 | None:intergenic | 25.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | chr1_1:44446284-44446303 | Msa0023340:intron | 25.0% |
| !! | CATACATATTTTGTTCCATA+TGG | - | chr1_1:44446366-44446385 | Msa0023340:five_prime_UTR | 25.0% |
| !!! | TTTTTCTTTTGATTTTTGGC+AGG | - | chr1_1:44446432-44446451 | Msa0023340:five_prime_UTR | 25.0% |
| ! | ATCAGACTATATATTGTTAG+AGG | + | chr1_1:44446571-44446590 | None:intergenic | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | chr1_1:44446981-44447000 | Msa0023340:intron | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | chr1_1:44446982-44447001 | Msa0023340:intron | 25.0% |
| CAATGACAGTTACATATTTG+AGG | - | chr1_1:44442381-44442400 | Msa0023340:three_prime_UTR | 30.0% | |
| AGAAGAAGAAATGACGAATT+GGG | + | chr1_1:44442527-44442546 | None:intergenic | 30.0% | |
| TAGAAGAAGAAATGACGAAT+TGG | + | chr1_1:44442528-44442547 | None:intergenic | 30.0% | |
| CTGTGTGATGATAATTGAAA+GGG | + | chr1_1:44442564-44442583 | None:intergenic | 30.0% | |
| TCTGTGTGATGATAATTGAA+AGG | + | chr1_1:44442565-44442584 | None:intergenic | 30.0% | |
| CTACAACTACAAACAAACAA+TGG | + | chr1_1:44442624-44442643 | None:intergenic | 30.0% | |
| GATATCCATTAATACTTCCA+TGG | - | chr1_1:44442643-44442662 | Msa0023340:CDS | 30.0% | |
| !!! | GAAATTTTTTGATGGTTGGA+TGG | - | chr1_1:44443037-44443056 | Msa0023340:intron | 30.0% |
| ! | TTATTGATTGCAGTCAATCA+TGG | - | chr1_1:44443102-44443121 | Msa0023340:intron | 30.0% |
| !! | TAAGCTAGCTTTCAATGAAT+TGG | + | chr1_1:44443174-44443193 | None:intergenic | 30.0% |
| TTCTTTGCAAAAGTGATTTG+TGG | + | chr1_1:44443217-44443236 | None:intergenic | 30.0% | |
| !! | TTTTGTAAGTGCTTTTGGAA+TGG | + | chr1_1:44443298-44443317 | None:intergenic | 30.0% |
| ATCTCTCAAACAAGTTTAAG+AGG | - | chr1_1:44443364-44443383 | Msa0023340:CDS | 30.0% | |
| ! | CTTCTTTGAAAATGAAAGCA+TGG | + | chr1_1:44443673-44443692 | None:intergenic | 30.0% |
| ! | TTCAAAGAAGTGTAACCTTA+AGG | - | chr1_1:44443683-44443702 | Msa0023340:intron | 30.0% |
| !!! | TTTCAGCGTAATTGTTGTTT+TGG | - | chr1_1:44443789-44443808 | Msa0023340:intron | 30.0% |
| ATATCACTCTATCTTAGATC+AGG | - | chr1_1:44444051-44444070 | Msa0023340:intron | 30.0% | |
| ATCTCATCAAATTGCATGAT+GGG | + | chr1_1:44444241-44444260 | None:intergenic | 30.0% | |
| AATCTCATCAAATTGCATGA+TGG | + | chr1_1:44444242-44444261 | None:intergenic | 30.0% | |
| !!! | TATTTTTTGTGACCATTTGC+AGG | - | chr1_1:44444501-44444520 | Msa0023340:CDS | 30.0% |
| TTTATGTATGTGTTCTACCT+TGG | + | chr1_1:44444588-44444607 | None:intergenic | 30.0% | |
| CATAAAGAAGTTGAAGACAA+TGG | - | chr1_1:44444602-44444621 | Msa0023340:intron | 30.0% | |
| GTTGCTATCAATTTCTACTT+TGG | + | chr1_1:44444666-44444685 | None:intergenic | 30.0% | |
| TAAAAACTCCAAAAGTTCCA+AGG | - | chr1_1:44444700-44444719 | Msa0023340:intron | 30.0% | |
| TATGTGCTTTACGACATATT+TGG | + | chr1_1:44445062-44445081 | None:intergenic | 30.0% | |
| ! | CAAATTTGGTTTAACTTTGG+TGG | + | chr1_1:44445155-44445174 | None:intergenic | 30.0% |
| AAGAAAGTTGACAAACTCAA+AGG | - | chr1_1:44445339-44445358 | Msa0023340:intron | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | chr1_1:44445374-44445393 | Msa0023340:intron | 30.0% | |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | chr1_1:44445414-44445433 | Msa0023340:intron | 30.0% |
| CTATCAAGGTACATAGAAAA+AGG | + | chr1_1:44445463-44445482 | None:intergenic | 30.0% | |
| GAAATGTAAAGAAGCTATCA+AGG | + | chr1_1:44445477-44445496 | None:intergenic | 30.0% | |
| TAGTATAGAAGTAATGAGCA+TGG | + | chr1_1:44445508-44445527 | None:intergenic | 30.0% | |
| TTCTATACTATCTACCAGTT+TGG | - | chr1_1:44445518-44445537 | Msa0023340:intron | 30.0% | |
| ! | TTGAAGCTGCATAACAATTT+TGG | + | chr1_1:44445645-44445664 | None:intergenic | 30.0% |
| ! | CAATCTTTAATGCTAGTCTA+AGG | - | chr1_1:44445792-44445811 | Msa0023340:intron | 30.0% |
| TTCGTTCATCAGAAATATGT+TGG | + | chr1_1:44445866-44445885 | None:intergenic | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | chr1_1:44445877-44445896 | Msa0023340:intron | 30.0% | |
| AGAAGAGAAAATTCAGGAAA+AGG | - | chr1_1:44446290-44446309 | Msa0023340:intron | 30.0% | |
| TAATCTGCAAGAGAAATCAA+AGG | - | chr1_1:44446326-44446345 | Msa0023340:five_prime_UTR | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | chr1_1:44446384-44446403 | None:intergenic | 30.0% | |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | chr1_1:44446382-44446401 | Msa0023340:five_prime_UTR | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | chr1_1:44446819-44446838 | None:intergenic | 30.0% |
| AATCAAAAAAACTCAAGCCA+AGG | - | chr1_1:44446818-44446837 | Msa0023340:intron | 30.0% | |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | chr1_1:44446929-44446948 | None:intergenic | 30.0% |
| GCAAAAACAAGTATAGTTGA+AGG | - | chr1_1:44446933-44446952 | Msa0023340:intron | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | chr1_1:44447005-44447024 | Msa0023340:intron | 30.0% | |
| ! | TGTTTTTCCTTCTGATTGAA+GGG | - | chr1_1:44447314-44447333 | Msa0023340:five_prime_UTR | 30.0% |
| !!! | TTTTTGCTAGCAAAGCATTG+AGG | + | chr1_1:44442335-44442354 | None:intergenic | 35.0% |
| ! | TTATTGACTGCAGTCAATCA+TGG | + | chr1_1:44442432-44442451 | None:intergenic | 35.0% |
| !! | GAAAGTTTTTGATGGTTGGA+TGG | + | chr1_1:44442497-44442516 | None:intergenic | 35.0% |
| GAAGAAGAAATGACGAATTG+GGG | + | chr1_1:44442526-44442545 | None:intergenic | 35.0% | |
| GTGATGATAATTGAAAGGGT+TGG | + | chr1_1:44442560-44442579 | None:intergenic | 35.0% | |
| ACAAACAATGGTGGTCATAA+TGG | + | chr1_1:44442612-44442631 | None:intergenic | 35.0% | |
| CAACTACAAACAAACAATGG+TGG | + | chr1_1:44442621-44442640 | None:intergenic | 35.0% | |
| ATCCATTAATACTTCCATGG+AGG | - | chr1_1:44442646-44442665 | Msa0023340:CDS | 35.0% | |
| ! | CTAAGTTGAGGGTTTCATAT+TGG | + | chr1_1:44442896-44442915 | None:intergenic | 35.0% |
| ! | AGGTACAAACACTAAGTTGA+GGG | + | chr1_1:44442907-44442926 | None:intergenic | 35.0% |
| AAGGTACAAACACTAAGTTG+AGG | + | chr1_1:44442908-44442927 | None:intergenic | 35.0% | |
| AATAGCAACTGTCACAATGA+CGG | + | chr1_1:44443129-44443148 | None:intergenic | 35.0% | |
| !! | AACTGAAGTTGGTGATACTA+AGG | + | chr1_1:44443242-44443261 | None:intergenic | 35.0% |
| TTGAAGATGGAAACTGAAGT+TGG | + | chr1_1:44443253-44443272 | None:intergenic | 35.0% | |
| GTGATAGTTGAACTTGAAGA+TGG | + | chr1_1:44443266-44443285 | None:intergenic | 35.0% | |
| ! | ATCAAAATTACAGCATTGGG+AGG | - | chr1_1:44443712-44443731 | Msa0023340:CDS | 35.0% |
| AGAGGATCAAATCTGCAAAA+TGG | + | chr1_1:44443829-44443848 | None:intergenic | 35.0% | |
| ! | GAAGATGAGAAGCATGTTAT+TGG | - | chr1_1:44444554-44444573 | Msa0023340:CDS | 35.0% |
| TGTTATTGGTGAAACAACCA+AGG | - | chr1_1:44444568-44444587 | Msa0023340:CDS | 35.0% | |
| ! | TTATGGTACCTTGGAACTTT+TGG | + | chr1_1:44444711-44444730 | None:intergenic | 35.0% |
| ATACATTGCTTATGGTACCT+TGG | + | chr1_1:44444720-44444739 | None:intergenic | 35.0% | |
| TGACCTTGTCAATTCATGTT+AGG | - | chr1_1:44445084-44445103 | Msa0023340:CDS | 35.0% | |
| GTTCCTAACATGAATTGACA+AGG | + | chr1_1:44445090-44445109 | None:intergenic | 35.0% | |
| AGTCTTCTTAAGAATCCCAT+CGG | + | chr1_1:44445278-44445297 | None:intergenic | 35.0% | |
| AAAGTTGACAAACTCAAAGG+AGG | - | chr1_1:44445342-44445361 | Msa0023340:intron | 35.0% | |
| AAGGAGGCAAAAACAAACAA+TGG | - | chr1_1:44445358-44445377 | Msa0023340:intron | 35.0% | |
| ATACTATCTACCAGTTTGGA+AGG | - | chr1_1:44445522-44445541 | Msa0023340:intron | 35.0% | |
| ! | AACGATACAGTTTGGAGTTT+AGG | + | chr1_1:44445604-44445623 | None:intergenic | 35.0% |
| !!! | CTGCATAACAATTTTGGTTG+CGG | + | chr1_1:44445639-44445658 | None:intergenic | 35.0% |
| AGCATATTTGACCTCAATAG+TGG | - | chr1_1:44445673-44445692 | Msa0023340:intron | 35.0% | |
| ! | CACATTTTGCCTCAATATCA+TGG | - | chr1_1:44445707-44445726 | Msa0023340:intron | 35.0% |
| CTCATTAGGATATGAACTTG+CGG | - | chr1_1:44446026-44446045 | Msa0023340:intron | 35.0% | |
| CTGGATGAAAAGGATAACAT+AGG | + | chr1_1:44446256-44446275 | None:intergenic | 35.0% | |
| TTGAGAAGAACTGGATGAAA+AGG | + | chr1_1:44446266-44446285 | None:intergenic | 35.0% | |
| ! | CTTCTAACTTTGAGAAGAAC+TGG | + | chr1_1:44446275-44446294 | None:intergenic | 35.0% |
| TCCAATGCCAAGTTTCTATA+AGG | - | chr1_1:44446510-44446529 | Msa0023340:five_prime_UTR | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | chr1_1:44446514-44446533 | None:intergenic | 35.0% | |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | chr1_1:44446541-44446560 | None:intergenic | 35.0% |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | chr1_1:44446540-44446559 | Msa0023340:five_prime_UTR | 35.0% | |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | chr1_1:44446544-44446563 | None:intergenic | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | chr1_1:44446743-44446762 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | chr1_1:44446744-44446763 | None:intergenic | 35.0% |
| ACAGAAGAATGATTCAACCA+AGG | - | chr1_1:44446755-44446774 | Msa0023340:intron | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | chr1_1:44446838-44446857 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGCATCTTGGTCA+TGG | + | chr1_1:44446923-44446942 | None:intergenic | 35.0% |
| ATTCTTGTTCTATCCCATTC+TGG | + | chr1_1:44446998-44447017 | None:intergenic | 35.0% | |
| ACTTCATAGGATACAGTTTC+TGG | + | chr1_1:44447071-44447090 | None:intergenic | 35.0% | |
| GAGTTTAGATTGGTGTATCA+AGG | - | chr1_1:44447099-44447118 | Msa0023340:intron | 35.0% | |
| ! | GTGTTTTTCCTTCTGATTGA+AGG | - | chr1_1:44447313-44447332 | Msa0023340:five_prime_UTR | 35.0% |
| CAGTTACATATTTGAGGGAG+TGG | - | chr1_1:44442387-44442406 | Msa0023340:three_prime_UTR | 40.0% | |
| AGTGGTAGAAGAGTCATTGT+GGG | - | chr1_1:44442405-44442424 | Msa0023340:three_prime_UTR | 40.0% | |
| AGTCAAAGATCATCAACCGT+CGG | - | chr1_1:44442469-44442488 | Msa0023340:three_prime_UTR | 40.0% | |
| !! | CACCTCCATGGAAGTATTAA+TGG | + | chr1_1:44442651-44442670 | None:intergenic | 40.0% |
| ! | GAAGGCTTTGTAAGCTCTTA+AGG | - | chr1_1:44442719-44442738 | Msa0023340:CDS | 40.0% |
| !!! | GAAGAAGGGGACTTTTTCAA+TGG | - | chr1_1:44442993-44443012 | Msa0023340:CDS | 40.0% |
| GCATATGGAAAACAAACGCA+TGG | + | chr1_1:44443444-44443463 | None:intergenic | 40.0% | |
| AGATTCCATTGTCCTGCAAA+TGG | + | chr1_1:44444516-44444535 | None:intergenic | 40.0% | |
| GGTTGAGATGCTTCATTCTT+GGG | + | chr1_1:44444644-44444663 | None:intergenic | 40.0% | |
| AAGCGCATTAATACGTGCAT+GGG | + | chr1_1:44444797-44444816 | None:intergenic | 40.0% | |
| TAAGCGCATTAATACGTGCA+TGG | + | chr1_1:44444798-44444817 | None:intergenic | 40.0% | |
| TGCACGTATTAATGCGCTTA+TGG | - | chr1_1:44444798-44444817 | Msa0023340:intron | 40.0% | |
| GTCAATTCATGTTAGGAACC+TGG | - | chr1_1:44445091-44445110 | Msa0023340:CDS | 40.0% | |
| GAAGTTGTGCCCTTCAAATT+TGG | + | chr1_1:44445169-44445188 | None:intergenic | 40.0% | |
| GGAATGTAAGGCTCTTTGAA+AGG | + | chr1_1:44445216-44445235 | None:intergenic | 40.0% | |
| !! | CTATGAAGAAAAGCACCGAT+GGG | - | chr1_1:44445260-44445279 | Msa0023340:intron | 40.0% |
| AACAAATGCAGCCACTATTG+AGG | + | chr1_1:44445687-44445706 | None:intergenic | 40.0% | |
| ! | TGCCTCAATATCATGGATTG+TGG | - | chr1_1:44445714-44445733 | Msa0023340:intron | 40.0% |
| CAGTCATGTGGAAAACCATA+AGG | + | chr1_1:44445895-44445914 | None:intergenic | 40.0% | |
| GGGTTTGAATTCTGATCAAC+AGG | + | chr1_1:44445922-44445941 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | chr1_1:44445961-44445980 | None:intergenic | 40.0% | |
| ! | CTCTGGATTTTCCTTCAGAT+TGG | - | chr1_1:44446147-44446166 | Msa0023340:intron | 40.0% |
| ! | GTTTTCATTGGCAGCTCTTT+AGG | - | chr1_1:44446394-44446413 | Msa0023340:five_prime_UTR | 40.0% |
| ATTTCTTGATCTCTGCCTCT+TGG | + | chr1_1:44446462-44446481 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | chr1_1:44446520-44446539 | None:intergenic | 40.0% | |
| ! | TTCCAAGCTTCGGTGATTTT+GGG | + | chr1_1:44446668-44446687 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+CGG | + | chr1_1:44446678-44446697 | None:intergenic | 40.0% |
| TTTCTCATGTGGGATAGAAC+TGG | + | chr1_1:44446733-44446752 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | chr1_1:44446761-44446780 | Msa0023340:intron | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | chr1_1:44446768-44446787 | Msa0023340:intron | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | chr1_1:44446775-44446794 | None:intergenic | 40.0% |
| TCAAGCCAAGGTACAATCTA+AGG | - | chr1_1:44446830-44446849 | Msa0023340:intron | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | chr1_1:44446839-44446858 | Msa0023340:intron | 40.0% | |
| !! | TTTCTGGTGTGGAAGCATTA+AGG | + | chr1_1:44447055-44447074 | None:intergenic | 40.0% |
| !! | ATAGGATACAGTTTCTGGTG+TGG | + | chr1_1:44447066-44447085 | None:intergenic | 40.0% |
| TGTATCCTATGAAGTTGCTG+TGG | - | chr1_1:44447076-44447095 | Msa0023340:intron | 40.0% | |
| GTATCCTATGAAGTTGCTGT+GGG | - | chr1_1:44447077-44447096 | Msa0023340:intron | 40.0% | |
| GAGTGGTAGAAGAGTCATTG+TGG | - | chr1_1:44442404-44442423 | Msa0023340:three_prime_UTR | 45.0% | |
| ! | TCCATGGAGGTGCACATAAT+AGG | - | chr1_1:44442659-44442678 | Msa0023340:CDS | 45.0% |
| ! | CCATGGAGGTGCACATAATA+GGG | - | chr1_1:44442660-44442679 | Msa0023340:CDS | 45.0% |
| ! | CATGGAGGTGCACATAATAG+GGG | - | chr1_1:44442661-44442680 | Msa0023340:CDS | 45.0% |
| AAAGTCCCCTTCTTCAACCT+CGG | + | chr1_1:44442988-44443007 | None:intergenic | 45.0% | |
| AGTCATAGAACATCAACCGC+TGG | + | chr1_1:44443065-44443084 | None:intergenic | 45.0% | |
| TTGTGGAGAGAAAGCTCAAG+TGG | + | chr1_1:44443200-44443219 | None:intergenic | 45.0% | |
| !! | TTGTGGAGAGTTTGTTGCAG+AGG | - | chr1_1:44443519-44443538 | Msa0023340:CDS | 45.0% |
| GTCAGAGTTCGATCTTTGAC+GGG | + | chr1_1:44444174-44444193 | None:intergenic | 45.0% | |
| GGTCAGAGTTCGATCTTTGA+CGG | + | chr1_1:44444175-44444194 | None:intergenic | 45.0% | |
| ACTCTGACCACATGCTTAAG+CGG | - | chr1_1:44444186-44444205 | Msa0023340:intron | 45.0% | |
| AGGACTCAATAAAGTTGGCG+TGG | - | chr1_1:44444295-44444314 | Msa0023340:CDS | 45.0% | |
| TGTGACCATTTGCAGGACAA+TGG | - | chr1_1:44444508-44444527 | Msa0023340:CDS | 45.0% | |
| GGGTTGAGATGCTTCATTCT+TGG | + | chr1_1:44444645-44444664 | None:intergenic | 45.0% | |
| CTGATTTCGACGGGAATGTA+AGG | + | chr1_1:44445228-44445247 | None:intergenic | 45.0% | |
| ! | TCAAGACGAGCTGATTTCGA+CGG | + | chr1_1:44445238-44445257 | None:intergenic | 45.0% |
| !! | GCTATGAAGAAAAGCACCGA+TGG | - | chr1_1:44445259-44445278 | Msa0023340:intron | 45.0% |
| ! | CTTTTGGCAACTGCATTCAC+TGG | + | chr1_1:44445554-44445573 | None:intergenic | 45.0% |
| ACATTGATGCCTCAGATGTC+TGG | + | chr1_1:44445577-44445596 | None:intergenic | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | chr1_1:44445719-44445738 | None:intergenic | 45.0% | |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | chr1_1:44445942-44445961 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | chr1_1:44445943-44445962 | None:intergenic | 45.0% |
| GCTATCAGAAGTCTTACTCC+TGG | - | chr1_1:44446109-44446128 | Msa0023340:intron | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | chr1_1:44446124-44446143 | Msa0023340:intron | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | chr1_1:44446161-44446180 | None:intergenic | 45.0% | |
| !! | TTTTTGGCAGGAAAGCCAAG+AGG | - | chr1_1:44446444-44446463 | Msa0023340:five_prime_UTR | 45.0% |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | chr1_1:44446538-44446557 | None:intergenic | 45.0% |
| ! | CTTCCAAGCTTCGGTGATTT+TGG | + | chr1_1:44446669-44446688 | None:intergenic | 45.0% |
| CCGAAGCTTGGAAGAAACAA+AGG | - | chr1_1:44446675-44446694 | Msa0023340:intron | 45.0% | |
| TGTCATGTCTTCCACAAACG+AGG | - | chr1_1:44446884-44446903 | Msa0023340:intron | 45.0% | |
| AATCACTGAGACCTCGTTTG+TGG | + | chr1_1:44446898-44446917 | None:intergenic | 45.0% | |
| TCTTGCTCAGAACAGTGTGT+TGG | - | chr1_1:44447028-44447047 | Msa0023340:intron | 45.0% | |
| AACTCCCACAGCAACTTCAT+AGG | + | chr1_1:44447084-44447103 | None:intergenic | 45.0% | |
| GTTGCTGTGGGAGTTTAGAT+TGG | - | chr1_1:44447089-44447108 | Msa0023340:intron | 45.0% | |
| ACAGTGTCCCTTCAATCAGA+AGG | + | chr1_1:44447324-44447343 | None:intergenic | 45.0% | |
| !! | TTTATAATTTAGTAAATATT+GGG | + | chr1_1:44445771-44445790 | None:intergenic | 5.0% |
| !! | ATTTATAATTTAGTAAATAT+TGG | + | chr1_1:44445772-44445791 | None:intergenic | 5.0% |
| !! | GCTAGCAAAGCATTGAGGTG+AGG | + | chr1_1:44442330-44442349 | None:intergenic | 50.0% |
| TGATGGTTGGATGGATCCGA+CGG | + | chr1_1:44442488-44442507 | None:intergenic | 50.0% | |
| CCCTATTATGTGCACCTCCA+TGG | + | chr1_1:44442663-44442682 | None:intergenic | 50.0% | |
| ATATATGTTGCAGTGGCCCG+AGG | - | chr1_1:44442968-44442987 | Msa0023340:CDS | 50.0% | |
| AAGTCCCCTTCTTCAACCTC+GGG | + | chr1_1:44442987-44443006 | None:intergenic | 50.0% | |
| TGATGGTTGGATGGATCCAG+CGG | - | chr1_1:44443046-44443065 | Msa0023340:intron | 50.0% | |
| TACTCGACCGCTTAAGCATG+TGG | + | chr1_1:44444196-44444215 | None:intergenic | 50.0% | |
| !! | ATTGCATGATGGGCCTGATG+TGG | + | chr1_1:44444231-44444250 | None:intergenic | 50.0% |
| TTGCACGGTGTGGCCTATTA+CGG | + | chr1_1:44444761-44444780 | None:intergenic | 50.0% | |
| ! | GCAACAACGCTTTTGACACC+AGG | + | chr1_1:44445112-44445131 | None:intergenic | 50.0% |
| ! | CAAGACGAGCTGATTTCGAC+GGG | + | chr1_1:44445237-44445256 | None:intergenic | 50.0% |
| TGCCAAAAGCCAGACATCTG+AGG | - | chr1_1:44445565-44445584 | Msa0023340:intron | 50.0% | |
| !!! | TGCCTCAGATGTCTGGCTTT+TGG | + | chr1_1:44445570-44445589 | None:intergenic | 50.0% |
| TCAACAGGTCTGCAGTCATG+TGG | + | chr1_1:44445907-44445926 | None:intergenic | 50.0% | |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | chr1_1:44446174-44446193 | Msa0023340:intron | 50.0% | |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | chr1_1:44446657-44446676 | None:intergenic | 50.0% |
| CGCGGTCACGAAAACAGAAA+TGG | - | chr1_1:44446857-44446876 | Msa0023340:intron | 50.0% | |
| AGTGGCCCGAGGTTGAAGAA+GGG | - | chr1_1:44442979-44442998 | Msa0023340:CDS | 55.0% | |
| ! | ATCAAGTGCCGCACCACATC+AGG | - | chr1_1:44444215-44444234 | Msa0023340:intron | 55.0% |
| !! | ATGATGGGCCTGATGTGGTG+CGG | + | chr1_1:44444226-44444245 | None:intergenic | 55.0% |
| CTGGCGTAGACCTTCCAAAC+TGG | + | chr1_1:44445535-44445554 | None:intergenic | 55.0% | |
| GAGCCGTTGCTCTTCTTACC+AGG | + | chr1_1:44446130-44446149 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | chr1_1:44446130-44446149 | Msa0023340:intron | 55.0% | |
| CGCCCAAAATCACCGAAGCT+TGG | - | chr1_1:44446663-44446682 | Msa0023340:intron | 55.0% | |
| CAGTGGCCCGAGGTTGAAGA+AGG | - | chr1_1:44442978-44442997 | Msa0023340:CDS | 60.0% | |
| GTGGCCCGAGGTTGAAGAAG+GGG | - | chr1_1:44442980-44442999 | Msa0023340:CDS | 60.0% | |
| TAGGCCACACCGTGCAACCT+CGG | - | chr1_1:44444764-44444783 | Msa0023340:intron | 60.0% | |
| GGTCATCAGCCGAGGTTGCA+CGG | + | chr1_1:44444776-44444795 | None:intergenic | 60.0% | |
| GGGAGTTGGGATTGCTGTCG+TGG | + | chr1_1:44445751-44445770 | None:intergenic | 60.0% | |
| TCAGCCGAGGTTGCACGGTG+TGG | + | chr1_1:44444771-44444790 | None:intergenic | 65.0% | |
| CGTGCATGGGTCATCAGCCG+AGG | + | chr1_1:44444784-44444803 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 44442311 | 44447395 | 44442311 | ID=Msa0023340;Name=Msa0023340 |
| chr1_1 | mRNA | 44442311 | 44447395 | 44442311 | ID=Msa0023340-mRNA-1;Parent=Msa0023340;Name=Msa0023340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=368|1|1|1|0.77|0.8|10|289|458 |
| chr1_1 | exon | 44442311 | 44443055 | 44442311 | ID=Msa0023340-mRNA-1:exon:12779;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44443145 | 44443252 | 44443145 | ID=Msa0023340-mRNA-1:exon:12778;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44443359 | 44443430 | 44443359 | ID=Msa0023340-mRNA-1:exon:12777;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44443511 | 44443589 | 44443511 | ID=Msa0023340-mRNA-1:exon:12776;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44443711 | 44443788 | 44443711 | ID=Msa0023340-mRNA-1:exon:12775;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44444112 | 44444170 | 44444112 | ID=Msa0023340-mRNA-1:exon:12774;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44444271 | 44444600 | 44444271 | ID=Msa0023340-mRNA-1:exon:12773;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44444985 | 44445183 | 44444985 | ID=Msa0023340-mRNA-1:exon:12772;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44446321 | 44446572 | 44446321 | ID=Msa0023340-mRNA-1:exon:12771;Parent=Msa0023340-mRNA-1 |
| chr1_1 | exon | 44447284 | 44447395 | 44447284 | ID=Msa0023340-mRNA-1:exon:12770;Parent=Msa0023340-mRNA-1 |
| chr1_1 | five_prime_UTR | 44447284 | 44447395 | 44447284 | ID=Msa0023340-mRNA-1:five_prime_utr;Parent=Msa0023340-mRNA-1 |
| chr1_1 | five_prime_UTR | 44446321 | 44446572 | 44446321 | ID=Msa0023340-mRNA-1:five_prime_utr;Parent=Msa0023340-mRNA-1 |
| chr1_1 | five_prime_UTR | 44445180 | 44445183 | 44445180 | ID=Msa0023340-mRNA-1:five_prime_utr;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44444985 | 44445179 | 44444985 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44444271 | 44444600 | 44444271 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44444112 | 44444170 | 44444112 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44443711 | 44443788 | 44443711 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44443511 | 44443589 | 44443511 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44443359 | 44443430 | 44443359 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44443145 | 44443252 | 44443145 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | CDS | 44442600 | 44443055 | 44442600 | ID=Msa0023340-mRNA-1:cds;Parent=Msa0023340-mRNA-1 |
| chr1_1 | three_prime_UTR | 44442311 | 44442599 | 44442311 | ID=Msa0023340-mRNA-1:three_prime_utr;Parent=Msa0023340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
