Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162440 | sp|Q9SJ62|WDL4_ARATH | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.45e-50 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162440 | A0A072VJ58 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023340 | Msa0162440 | 0.827017 | 1.972882e-54 | -8.615850e-47 |
| Msa0036890 | Msa0162440 | 0.809507 | 1.828935e-50 | -8.615850e-47 |
| Msa0071100 | Msa0162440 | 0.996968 | 7.158721e-235 | -8.615850e-47 |
| Msa0084970 | Msa0162440 | 0.818658 | 1.747317e-52 | -8.615850e-47 |
| Msa0119100 | Msa0162440 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0130990 | Msa0162440 | 0.805999 | 1.017652e-49 | -8.615850e-47 |
| Msa0162440 | Msa0870540 | 0.815096 | 1.101484e-51 | -8.615850e-47 |
| Msa0162440 | Msa0993740 | 0.817218 | 3.696711e-52 | -8.615850e-47 |
| Msa0162440 | Msa1085330 | 0.838471 | 2.820434e-57 | -8.615850e-47 |
| Msa0162440 | Msa1348090 | 0.811861 | 5.664408e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162440 | MtrunA17_Chr1g0176611 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 839 |
| Msa0162440 | MtrunA17_Chr7g0267791 | 49.894 | 471 | 173 | 13 | 1 | 458 | 1 | 421 | 7.25e-113 | 338 |
| Msa0162440 | MtrunA17_Chr3g0137761 | 45.413 | 218 | 84 | 7 | 233 | 419 | 210 | 423 | 1.73e-40 | 150 |
| Msa0162440 | MtrunA17_Chr1g0149361 | 78.495 | 93 | 19 | 1 | 233 | 324 | 227 | 319 | 1.71e-39 | 148 |
| Msa0162440 | MtrunA17_Chr1g0187121 | 61.290 | 93 | 35 | 1 | 231 | 322 | 213 | 305 | 2.52e-27 | 112 |
| Msa0162440 | MtrunA17_Chr1g0190551 | 47.794 | 136 | 61 | 3 | 207 | 332 | 162 | 297 | 1.42e-25 | 107 |
| Msa0162440 | MtrunA17_Chr7g0274281 | 56.989 | 93 | 39 | 1 | 231 | 322 | 208 | 300 | 3.91e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162440 | AT2G35880.3 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0162440 | AT2G35880.2 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0162440 | AT2G35880.1 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0162440 | AT4G32330.2 | 46.448 | 183 | 89 | 5 | 149 | 322 | 113 | 295 | 7.37e-36 | 138 |
| Msa0162440 | AT4G32330.1 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0162440 | AT4G32330.4 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0162440 | AT4G32330.3 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0162440 | AT2G25480.1 | 70.330 | 91 | 26 | 1 | 233 | 322 | 181 | 271 | 7.67e-34 | 131 |
| Msa0162440 | AT2G25480.2 | 70.330 | 91 | 26 | 1 | 233 | 322 | 182 | 272 | 7.72e-34 | 131 |
| Msa0162440 | AT5G28646.3 | 47.794 | 136 | 68 | 2 | 187 | 319 | 34 | 169 | 8.88e-27 | 107 |
| Msa0162440 | AT5G28646.2 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.90e-26 | 106 |
| Msa0162440 | AT5G28646.1 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.90e-26 | 106 |
| Msa0162440 | AT3G04630.1 | 51.754 | 114 | 47 | 3 | 213 | 318 | 99 | 212 | 2.52e-25 | 105 |
| Msa0162440 | AT3G04630.3 | 51.754 | 114 | 47 | 3 | 213 | 318 | 103 | 216 | 2.61e-25 | 105 |
| Msa0162440 | AT3G04630.2 | 51.754 | 114 | 47 | 3 | 213 | 318 | 98 | 211 | 2.78e-25 | 105 |
| Msa0162440 | AT3G23090.5 | 53.448 | 116 | 47 | 2 | 212 | 320 | 167 | 282 | 4.85e-25 | 105 |
| Msa0162440 | AT3G23090.1 | 53.448 | 116 | 47 | 2 | 212 | 320 | 166 | 281 | 5.11e-25 | 105 |
| Msa0162440 | AT3G23090.4 | 53.448 | 116 | 47 | 2 | 212 | 320 | 202 | 317 | 7.28e-25 | 105 |
| Msa0162440 | AT3G23090.2 | 51.667 | 120 | 47 | 3 | 212 | 320 | 166 | 285 | 4.87e-24 | 103 |
| Msa0162440 | AT3G23090.3 | 51.667 | 120 | 47 | 3 | 212 | 320 | 202 | 321 | 8.23e-24 | 103 |
| Msa0162440 | AT1G54460.1 | 54.839 | 93 | 41 | 1 | 231 | 322 | 162 | 254 | 3.00e-21 | 95.1 |
| Msa0162440 | AT1G70950.1 | 55.000 | 80 | 33 | 2 | 218 | 296 | 313 | 390 | 1.92e-16 | 82.0 |
Find 93 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTCGGTGATTT+TGG | 0.078087 | 1_4:+39356049 | None:intergenic |
| TAGCTTCTTATTAAGAAATA+TGG | 0.189804 | 1_4:-39355357 | Msa0162440:three_prime_UTR |
| ACTTCATAGGATACAGTTTC+TGG | 0.228034 | 1_4:+39355647 | None:intergenic |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1_4:+39355720 | None:intergenic |
| TTATGGTACCTTGGAACTTT+TGG | 0.246711 | 1_4:+39358040 | None:intergenic |
| TAATGAAATAACTGGTAAAA+AGG | 0.248214 | 1_4:+39355565 | None:intergenic |
| GAAGTTGTGCCCTTCAAATT+TGG | 0.258397 | 1_4:+39357590 | None:intergenic |
| GGGTTGAGATGCTTCATTCT+TGG | 0.262885 | 1_4:+39358106 | None:intergenic |
| TGCCTCAGATGTCTGGCTTT+TGG | 0.269501 | 1_4:+39357189 | None:intergenic |
| TTGCTATCAATTTCTACTTT+GGG | 0.283046 | 1_4:+39358086 | None:intergenic |
| GGTTGAGATGCTTCATTCTT+GGG | 0.299174 | 1_4:+39358107 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1_4:-39356175 | Msa0162440:intron |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1_4:-39355947 | Msa0162440:CDS |
| TTTCTGGTGTGGAAGCATTA+AGG | 0.334990 | 1_4:+39355663 | None:intergenic |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1_4:-39355885 | Msa0162440:CDS |
| GAAGATGAGAAGCATGTTAT+TGG | 0.347674 | 1_4:-39358194 | Msa0162440:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1_4:-39356205 | Msa0162440:CDS |
| GTTGCTATCAATTTCTACTT+TGG | 0.352478 | 1_4:+39358085 | None:intergenic |
| CACAATAATAATGAAATAAC+TGG | 0.358013 | 1_4:+39355557 | None:intergenic |
| GTCTCTCAAACAAGTTTAAG+AGG | 0.388918 | 1_4:-39359393 | Msa0162440:intron |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1_4:-39356425 | Msa0162440:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1_4:+39356256 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+CGG | 0.397619 | 1_4:+39356040 | None:intergenic |
| CTTCAAATTTGGTTTAACTT+TGG | 0.403096 | 1_4:+39357601 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1_4:+39356803 | None:intergenic |
| ATCTGAAAATGAAGTTGTTA+TGG | 0.408821 | 1_4:-39358216 | Msa0162440:CDS |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1_4:+39355985 | None:intergenic |
| ACATTGATGCCTCAGATGTC+TGG | 0.410213 | 1_4:+39357182 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1_4:+39355974 | None:intergenic |
| CGCGGTCACGAAAACAGAAA+TGG | 0.415791 | 1_4:-39355858 | Msa0162440:CDS |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1_4:+39356764 | None:intergenic |
| AATGACAGTTACATATTTGA+GGG | 0.429031 | 1_4:-39359664 | Msa0162440:five_prime_UTR |
| CAAATTTGGTTTAACTTTGG+TGG | 0.435552 | 1_4:+39357604 | None:intergenic |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1_4:+39355975 | None:intergenic |
| AACTGAAGTTGGTGATACTA+AGG | 0.445260 | 1_4:+39359518 | None:intergenic |
| TTTATGTATGTGTTCTACCT+TGG | 0.453122 | 1_4:+39358163 | None:intergenic |
| CAATGACAGTTACATATTTG+AGG | 0.456998 | 1_4:-39359665 | Msa0162440:five_prime_UTR |
| GAGTTTAGATTGGTGTATCA+AGG | 0.458663 | 1_4:-39355616 | Msa0162440:exon |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1_4:-39356585 | Msa0162440:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1_4:-39355733 | Msa0162440:CDS |
| CGCCCAAAATCACCGAAGCT+TGG | 0.469539 | 1_4:-39356052 | Msa0162440:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1_4:-39355734 | Msa0162440:CDS |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1_4:+39356588 | None:intergenic |
| GTTGCTGTGGGAGTTTAGAT+TGG | 0.474271 | 1_4:-39355626 | Msa0162440:exon |
| CATTATTATTGTGAATATAG+AGG | 0.476292 | 1_4:-39355547 | Msa0162440:three_prime_UTR |
| CAGTTACATATTTGAGGGAG+TGG | 0.477152 | 1_4:-39359659 | Msa0162440:five_prime_UTR |
| AACTCCCACAGCAACTTCAT+AGG | 0.482114 | 1_4:+39355634 | None:intergenic |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1_4:+39356204 | None:intergenic |
| CAAAGTTAAACCAAATTTGA+AGG | 0.485184 | 1_4:-39357600 | Msa0162440:CDS |
| CTGATTTCGATGGGAATGTA+AGG | 0.485692 | 1_4:+39357531 | None:intergenic |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1_4:+39356557 | None:intergenic |
| AATCACTGAGACCTCGTTTG+TGG | 0.511682 | 1_4:+39355820 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1_4:+39356198 | None:intergenic |
| GTGATAGTTGAACTTGAAGA+TGG | 0.522631 | 1_4:+39359494 | None:intergenic |
| GTCAATTCATGTTAGGAACC+TGG | 0.523313 | 1_4:-39357665 | Msa0162440:intron |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1_4:-39356431 | Msa0162440:CDS |
| TTCTTTGCAAGAGTGATTTG+TGG | 0.537588 | 1_4:+39359543 | None:intergenic |
| GGAATGTAAGGCTCTTTGAA+AGG | 0.548770 | 1_4:+39357543 | None:intergenic |
| AAAGTTAAACCAAATTTGAA+GGG | 0.551958 | 1_4:-39357599 | Msa0162440:CDS |
| TCAAGACGAGCTGATTTCGA+TGG | 0.562565 | 1_4:+39357521 | None:intergenic |
| TGTGACTATTTGCAGGACAA+TGG | 0.564635 | 1_4:-39358240 | Msa0162440:intron |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1_4:-39355954 | Msa0162440:CDS |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1_4:+39355880 | None:intergenic |
| TTGAAGATGGAAACTGAAGT+TGG | 0.581322 | 1_4:+39359507 | None:intergenic |
| CTATGAAGAAAAGCACTGAT+GGG | 0.582170 | 1_4:-39357496 | Msa0162440:CDS |
| ATACTATCTACCAGTTTGGA+AGG | 0.583340 | 1_4:-39357234 | Msa0162440:intron |
| AAGAAAGTTGACAAACTCAA+AGG | 0.583844 | 1_4:-39357417 | Msa0162440:CDS |
| ACAGTGTCCCTTCAATCAGA+AGG | 0.585170 | 1_4:+39355394 | None:intergenic |
| CCGAAGCTTGGAAGAAACAA+AGG | 0.587414 | 1_4:-39356040 | Msa0162440:CDS |
| TTGTGGAGAGAAAGCTCAAG+TGG | 0.589092 | 1_4:+39359560 | None:intergenic |
| GCAATCAGAAGTCTTACTCC+TGG | 0.589797 | 1_4:-39356606 | Msa0162440:intron |
| ATAGGATACAGTTTCTGGTG+TGG | 0.593998 | 1_4:+39355652 | None:intergenic |
| CAAGACGAGCTGATTTCGAT+GGG | 0.596069 | 1_4:+39357522 | None:intergenic |
| GCTATGAAGAAAAGCACTGA+TGG | 0.596407 | 1_4:-39357497 | Msa0162440:CDS |
| TGTATCCTATGAAGTTGCTG+TGG | 0.597144 | 1_4:-39355639 | Msa0162440:CDS |
| TGAATTAAGAGTTGAAGTCA+CGG | 0.602729 | 1_4:+39357439 | None:intergenic |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1_4:-39356541 | Msa0162440:intron |
| GCTAGCAAAGCATTGAGGTG+AGG | 0.629634 | 1_4:+39359719 | None:intergenic |
| CATAAAGAAGTTGAAGACAA+TGG | 0.630212 | 1_4:-39358146 | Msa0162440:CDS |
| ACAATGGAAACTCTAAACAA+AGG | 0.631858 | 1_4:-39357382 | Msa0162440:CDS |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1_4:-39355710 | Msa0162440:CDS |
| TATTCAGAAATATTAACAGA+AGG | 0.636984 | 1_4:+39355743 | None:intergenic |
| TGTCATGTCTTCCACAAACG+AGG | 0.638979 | 1_4:-39355831 | Msa0162440:CDS |
| GTATCCTATGAAGTTGCTGT+GGG | 0.642363 | 1_4:-39355638 | Msa0162440:CDS |
| TCTTGCTCAGAACAGTGTGT+TGG | 0.650728 | 1_4:-39355687 | Msa0162440:CDS |
| TGCCAAAAGCCAGACATCTG+AGG | 0.654628 | 1_4:-39357191 | Msa0162440:CDS |
| TAATCTGCAAGAGAAATCAA+AGG | 0.655226 | 1_4:-39356389 | Msa0162440:intron |
| AAAGTTGACAAACTCAAAGG+AGG | 0.655478 | 1_4:-39357414 | Msa0162440:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1_4:-39356591 | Msa0162440:CDS |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1_4:-39355876 | Msa0162440:CDS |
| AAATAGCTTTAAAAGCTCTG+AGG | 0.685220 | 1_4:-39357342 | Msa0162440:intron |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1_4:-39355960 | Msa0162440:CDS |
| TGTTATTGGTGAAACAACCA+AGG | 0.697770 | 1_4:-39358180 | Msa0162440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTTGATTTT+TGG | - | chr1_4:39358790-39358809 | Msa0162440:intron | 10.0% |
| !!! | AAACTTTCATATTTTCAAAT+AGG | + | chr1_4:39356177-39356196 | None:intergenic | 15.0% |
| !!! | ATTTGAAAATATGAAAGTTT+TGG | - | chr1_4:39356177-39356196 | Msa0162440:CDS | 15.0% |
| !!! | ATATTTTTGAACTACAAAAT+CGG | - | chr1_4:39356210-39356229 | Msa0162440:CDS | 15.0% |
| !!! | TAAATACTTGATCTAAAATA+TGG | + | chr1_4:39356382-39356401 | None:intergenic | 15.0% |
| !!! | ATTTTAGATCAAGTATTTAA+TGG | - | chr1_4:39356383-39356402 | Msa0162440:intron | 15.0% |
| !! | ATGAAAACAAAATAATGATT+TGG | + | chr1_4:39357220-39357239 | None:intergenic | 15.0% |
| !!! | TATAAATCAATCTTTAAAGT+TGG | - | chr1_4:39358106-39358125 | Msa0162440:CDS | 15.0% |
| !! | ATGAATTCATATATATCTTT+AGG | - | chr1_4:39358187-39358206 | Msa0162440:CDS | 15.0% |
| !! | AAATTTCATGAATCTATTAT+AGG | + | chr1_4:39358442-39358461 | None:intergenic | 15.0% |
| !! | ATTAATCAAAATTACAGCAT+TGG | - | chr1_4:39356035-39356054 | Msa0162440:CDS | 20.0% |
| !! | TTAATCAAAATTACAGCATT+GGG | - | chr1_4:39356036-39356055 | Msa0162440:CDS | 20.0% |
| !!! | AAAATTTTCTTACGATTTCA+TGG | + | chr1_4:39356295-39356314 | None:intergenic | 20.0% |
| !!! | ATTTTAAAATTTGACGGTTT+GGG | + | chr1_4:39356413-39356432 | None:intergenic | 20.0% |
| !!! | TATTTTAAAATTTGACGGTT+TGG | + | chr1_4:39356414-39356433 | None:intergenic | 20.0% |
| !!! | CTCACTATTTTAAAATTTGA+CGG | + | chr1_4:39356419-39356438 | None:intergenic | 20.0% |
| !!! | TGTATTTTGTAATTTGATTC+AGG | - | chr1_4:39356745-39356764 | Msa0162440:intron | 20.0% |
| !! | AAAACAAAACAAATTGTGTT+TGG | - | chr1_4:39356777-39356796 | Msa0162440:CDS | 20.0% |
| !! | TAATTATGATACATTGCTTA+TGG | + | chr1_4:39357057-39357076 | None:intergenic | 20.0% |
| !! | AGTGTTATATGTATAACTTA+TGG | - | chr1_4:39357170-39357189 | Msa0162440:intron | 20.0% |
| !! | AAACTATCATGAAAATCTTA+TGG | - | chr1_4:39357263-39357282 | Msa0162440:intron | 20.0% |
| !! | AAAGTTAAACCAAATTTGAA+GGG | - | chr1_4:39357478-39357497 | Msa0162440:CDS | 20.0% |
| !!! | TAATTTAAAACGATACAGTT+TGG | + | chr1_4:39357933-39357952 | None:intergenic | 20.0% |
| !!! | AACTGTATCGTTTTAAATTA+TGG | - | chr1_4:39357933-39357952 | Msa0162440:intron | 20.0% |
| !! | TTAAACTATTATGTCTCATT+AGG | - | chr1_4:39358367-39358386 | Msa0162440:intron | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | chr1_4:39358412-39358431 | None:intergenic | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | chr1_4:39358574-39358593 | None:intergenic | 20.0% |
| !!! | CTTAGATATTTTTTTCCATA+TGG | - | chr1_4:39358728-39358747 | Msa0162440:intron | 20.0% |
| !! | ATCAAACTATATATTGTTAG+AGG | + | chr1_4:39358933-39358952 | None:intergenic | 20.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | chr1_4:39358979-39358998 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGA+AGG | + | chr1_4:39359337-39359356 | None:intergenic | 20.0% |
| !! | TAATGAAATAACTGGTAAAA+AGG | + | chr1_4:39359515-39359534 | None:intergenic | 20.0% |
| !! | CACAATAATAATGAAATAAC+TGG | + | chr1_4:39359523-39359542 | None:intergenic | 20.0% |
| !! | CATTATTATTGTGAATATAG+AGG | - | chr1_4:39359530-39359549 | Msa0162440:five_prime_UTR | 20.0% |
| !! | TAGCTTCTTATTAAGAAATA+TGG | - | chr1_4:39359720-39359739 | Msa0162440:five_prime_UTR | 20.0% |
| ! | AATGACAGTTACATATTTGA+GGG | - | chr1_4:39355413-39355432 | Msa0162440:three_prime_UTR | 25.0% |
| !!! | TAAGCTAGTTTTCAATGAAT+TGG | + | chr1_4:39355494-39355513 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGTAAGTGCTTT+TGG | + | chr1_4:39355623-39355642 | None:intergenic | 25.0% |
| ! | AGAATTTGAATTCAGATTTG+TGG | - | chr1_4:39355951-39355970 | Msa0162440:CDS | 25.0% |
| !!! | AATTTTGATTAATCTCCTCA+AGG | + | chr1_4:39356028-39356047 | None:intergenic | 25.0% |
| !! | CTTTCATATTTTCAAATAGG+AGG | + | chr1_4:39356174-39356193 | None:intergenic | 25.0% |
| ! | GTAGTTCAAAAATATGATGA+AGG | + | chr1_4:39356205-39356224 | None:intergenic | 25.0% |
| !! | ATAGTGAGCTTAATTTTACA+AGG | - | chr1_4:39356431-39356450 | Msa0162440:CDS | 25.0% |
| !!! | TGCTAACTTCTTTTTTTTAG+AGG | + | chr1_4:39356645-39356664 | None:intergenic | 25.0% |
| ! | CTAAAAAAAAGAAGTTAGCA+TGG | - | chr1_4:39356645-39356664 | Msa0162440:intron | 25.0% |
| !! | ACTTAAACCAAACATGTTTT+AGG | - | chr1_4:39356668-39356687 | Msa0162440:intron | 25.0% |
| ! | CAAATAGTCACAAAAAATAG+AGG | + | chr1_4:39356829-39356848 | None:intergenic | 25.0% |
| !!! | TATTTTTTGTGACTATTTGC+AGG | - | chr1_4:39356830-39356849 | Msa0162440:intron | 25.0% |
| ! | ATCTGAAAATGAAGTTGTTA+TGG | - | chr1_4:39356861-39356880 | Msa0162440:intron | 25.0% |
| ! | TTGCTATCAATTTCTACTTT+GGG | + | chr1_4:39356994-39357013 | None:intergenic | 25.0% |
| ! | TTATATAGCAAATCCGTAAT+AGG | - | chr1_4:39357074-39357093 | Msa0162440:intron | 25.0% |
| ! | ATTATGTGCTTTGACATATT+TGG | + | chr1_4:39357385-39357404 | None:intergenic | 25.0% |
| !! | CTTCAAATTTGGTTTAACTT+TGG | + | chr1_4:39357479-39357498 | None:intergenic | 25.0% |
| ! | CAAAGTTAAACCAAATTTGA+AGG | - | chr1_4:39357477-39357496 | Msa0162440:CDS | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | chr1_4:39357800-39357819 | Msa0162440:intron | 25.0% |
| ! | TTTAGTAAATATTGGGAGTT+GGG | + | chr1_4:39358085-39358104 | None:intergenic | 25.0% |
| ! | ATTTAGTAAATATTGGGAGT+TGG | + | chr1_4:39358086-39358105 | None:intergenic | 25.0% |
| !!! | CATCAATACATTTTAGTCTA+AGG | - | chr1_4:39358148-39358167 | Msa0162440:CDS | 25.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | chr1_4:39358646-39358665 | Msa0162440:intron | 25.0% |
| !!! | TTTTTCTTTTGATTTTTGGC+AGG | - | chr1_4:39358794-39358813 | Msa0162440:intron | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | chr1_4:39359343-39359362 | Msa0162440:intron | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | chr1_4:39359344-39359363 | Msa0162440:intron | 25.0% |
| CAATGACAGTTACATATTTG+AGG | - | chr1_4:39355412-39355431 | Msa0162440:three_prime_UTR | 30.0% | |
| !! | TTTTGTAAGTGCTTTTGGAA+TGG | + | chr1_4:39355618-39355637 | None:intergenic | 30.0% |
| ! | CTTCTTTGAAAATGAAAGCA+TGG | + | chr1_4:39356000-39356019 | None:intergenic | 30.0% |
| ATTTGACGAGATTAAGATTC+TGG | - | chr1_4:39356569-39356588 | Msa0162440:CDS | 30.0% | |
| CTATGTTCCTAAAACATGTT+TGG | + | chr1_4:39356678-39356697 | None:intergenic | 30.0% | |
| TTTATGTATGTGTTCTACCT+TGG | + | chr1_4:39356917-39356936 | None:intergenic | 30.0% | |
| CATAAAGAAGTTGAAGACAA+TGG | - | chr1_4:39356931-39356950 | Msa0162440:intron | 30.0% | |
| GTTGCTATCAATTTCTACTT+TGG | + | chr1_4:39356995-39357014 | None:intergenic | 30.0% | |
| TAAAAACTCCAAAAGTTCCA+AGG | - | chr1_4:39357029-39357048 | Msa0162440:intron | 30.0% | |
| ! | CAAATTTGGTTTAACTTTGG+TGG | + | chr1_4:39357476-39357495 | None:intergenic | 30.0% |
| TGAATTAAGAGTTGAAGTCA+CGG | + | chr1_4:39357641-39357660 | None:intergenic | 30.0% | |
| AAGAAAGTTGACAAACTCAA+AGG | - | chr1_4:39357660-39357679 | Msa0162440:intron | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | chr1_4:39357695-39357714 | Msa0162440:intron | 30.0% | |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | chr1_4:39357735-39357754 | Msa0162440:intron | 30.0% |
| CTATCAAGCTACATAGAAAA+AGG | + | chr1_4:39357784-39357803 | None:intergenic | 30.0% | |
| TAGTATAGAAGTAATGAGCA+TGG | + | chr1_4:39357829-39357848 | None:intergenic | 30.0% | |
| TTCTATACTATCTACCAGTT+TGG | - | chr1_4:39357839-39357858 | Msa0162440:intron | 30.0% | |
| ! | TTGAAGCTGCATAACAATTT+TGG | + | chr1_4:39357966-39357985 | None:intergenic | 30.0% |
| TTCGTTCATCAGAAATATGT+TGG | + | chr1_4:39358221-39358240 | None:intergenic | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | chr1_4:39358232-39358251 | Msa0162440:intron | 30.0% | |
| CTGGATGAAAAGGATAAAAT+AGG | + | chr1_4:39358618-39358637 | None:intergenic | 30.0% | |
| TTGAGAAAAACTGGATGAAA+AGG | + | chr1_4:39358628-39358647 | None:intergenic | 30.0% | |
| ! | CTTCTAACTTTGAGAAAAAC+TGG | + | chr1_4:39358637-39358656 | None:intergenic | 30.0% |
| AGAAGAGAAAATTCAGGAAA+AGG | - | chr1_4:39358652-39358671 | Msa0162440:intron | 30.0% | |
| TAATCTGCAAGAGAAATCAA+AGG | - | chr1_4:39358688-39358707 | Msa0162440:intron | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | chr1_4:39358746-39358765 | None:intergenic | 30.0% | |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | chr1_4:39358744-39358763 | Msa0162440:intron | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | chr1_4:39359181-39359200 | None:intergenic | 30.0% |
| AATCAAAAAAACTCAAGCCA+AGG | - | chr1_4:39359180-39359199 | Msa0162440:intron | 30.0% | |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | chr1_4:39359291-39359310 | None:intergenic | 30.0% |
| GCAAAAACAAGTATAGTTGA+AGG | - | chr1_4:39359295-39359314 | Msa0162440:intron | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | chr1_4:39359367-39359386 | Msa0162440:intron | 30.0% | |
| ! | TGTTTTTCCTTCTGATTGAA+GGG | - | chr1_4:39359676-39359695 | Msa0162440:five_prime_UTR | 30.0% |
| !!! | TTTTTGCTAGCAAAGCATTG+AGG | + | chr1_4:39355366-39355385 | None:intergenic | 35.0% |
| TTCTTTGCAAGAGTGATTTG+TGG | + | chr1_4:39355537-39355556 | None:intergenic | 35.0% | |
| !! | AACTGAAGTTGGTGATACTA+AGG | + | chr1_4:39355562-39355581 | None:intergenic | 35.0% |
| TTGAAGATGGAAACTGAAGT+TGG | + | chr1_4:39355573-39355592 | None:intergenic | 35.0% | |
| GTGATAGTTGAACTTGAAGA+TGG | + | chr1_4:39355586-39355605 | None:intergenic | 35.0% | |
| GTCTCTCAAACAAGTTTAAG+AGG | - | chr1_4:39355684-39355703 | Msa0162440:CDS | 35.0% | |
| ! | TTCAAAGAAGTGTAACCTTG+AGG | - | chr1_4:39356010-39356029 | Msa0162440:CDS | 35.0% |
| ! | ATCAAAATTACAGCATTGGG+AGG | - | chr1_4:39356039-39356058 | Msa0162440:CDS | 35.0% |
| !!! | TTTCAGCGTGATTGTTGTTT+TGG | - | chr1_4:39356116-39356135 | Msa0162440:intron | 35.0% |
| TGGTCAAGTTTAATCGTTGA+CGG | + | chr1_4:39356496-39356515 | None:intergenic | 35.0% | |
| ATCTCGTCAAATTGCATGAT+CGG | + | chr1_4:39356561-39356580 | None:intergenic | 35.0% | |
| AGGACTCTATAAAGTTAGTG+TGG | - | chr1_4:39356615-39356634 | Msa0162440:intron | 35.0% | |
| ! | GAAGATGAGAAGCATGTTAT+TGG | - | chr1_4:39356883-39356902 | Msa0162440:intron | 35.0% |
| TGTTATTGGTGAAACAACCA+AGG | - | chr1_4:39356897-39356916 | Msa0162440:intron | 35.0% | |
| ! | TTATGGTACCTTGGAACTTT+TGG | + | chr1_4:39357040-39357059 | None:intergenic | 35.0% |
| ATACATTGCTTATGGTACCT+TGG | + | chr1_4:39357049-39357068 | None:intergenic | 35.0% | |
| TGACCTTGTCAATTCATGTT+AGG | - | chr1_4:39357405-39357424 | Msa0162440:CDS | 35.0% | |
| GTTCCTAACATGAATTGACA+AGG | + | chr1_4:39357411-39357430 | None:intergenic | 35.0% | |
| !! | CTATGAAGAAAAGCACTGAT+GGG | - | chr1_4:39357581-39357600 | Msa0162440:CDS | 35.0% |
| AAAGTTGACAAACTCAAAGG+AGG | - | chr1_4:39357663-39357682 | Msa0162440:intron | 35.0% | |
| AAGGAGGCAAAAACAAACAA+TGG | - | chr1_4:39357679-39357698 | Msa0162440:intron | 35.0% | |
| ATACTATCTACCAGTTTGGA+AGG | - | chr1_4:39357843-39357862 | Msa0162440:intron | 35.0% | |
| ! | AACGATACAGTTTGGAGTTT+AGG | + | chr1_4:39357925-39357944 | None:intergenic | 35.0% |
| !!! | CTGCATAACAATTTTGGTTG+CGG | + | chr1_4:39357960-39357979 | None:intergenic | 35.0% |
| AGCATATTTGACCTCAATAG+TGG | - | chr1_4:39357994-39358013 | Msa0162440:intron | 35.0% | |
| CACATTATGCCTCAATATCA+TGG | - | chr1_4:39358028-39358047 | Msa0162440:intron | 35.0% | |
| CTCATTAGGATATGAACTTG+TGG | - | chr1_4:39358381-39358400 | Msa0162440:intron | 35.0% | |
| TCCAATGCCAAGTTTCTATA+AGG | - | chr1_4:39358872-39358891 | Msa0162440:intron | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | chr1_4:39358876-39358895 | None:intergenic | 35.0% | |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | chr1_4:39358903-39358922 | None:intergenic | 35.0% |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | chr1_4:39358902-39358921 | Msa0162440:intron | 35.0% | |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | chr1_4:39358906-39358925 | None:intergenic | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | chr1_4:39359105-39359124 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | chr1_4:39359106-39359125 | None:intergenic | 35.0% |
| ACAGAAGAATGATTCAACCA+AGG | - | chr1_4:39359117-39359136 | Msa0162440:intron | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | chr1_4:39359200-39359219 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGCATCTTGGTCA+TGG | + | chr1_4:39359285-39359304 | None:intergenic | 35.0% |
| ATTCTTGTTCTATCCCATTC+TGG | + | chr1_4:39359360-39359379 | None:intergenic | 35.0% | |
| ACTTCATAGGATACAGTTTC+TGG | + | chr1_4:39359433-39359452 | None:intergenic | 35.0% | |
| GAGTTTAGATTGGTGTATCA+AGG | - | chr1_4:39359461-39359480 | Msa0162440:five_prime_UTR | 35.0% | |
| ! | GTGTTTTTCCTTCTGATTGA+AGG | - | chr1_4:39359675-39359694 | Msa0162440:five_prime_UTR | 35.0% |
| CAGTTACATATTTGAGGGAG+TGG | - | chr1_4:39355418-39355437 | Msa0162440:three_prime_UTR | 40.0% | |
| !! | AGTTTGTGAGAGTTTGTTGC+AGG | - | chr1_4:39355844-39355863 | Msa0162440:CDS | 40.0% |
| !! | GTTTGTGAGAGTTTGTTGCA+GGG | - | chr1_4:39355845-39355864 | Msa0162440:CDS | 40.0% |
| !! | TTTGTGAGAGTTTGTTGCAG+GGG | - | chr1_4:39355846-39355865 | Msa0162440:CDS | 40.0% |
| GGAGGATCAAATCTGCAAAA+TGG | + | chr1_4:39356156-39356175 | None:intergenic | 40.0% | |
| GGTCAAGTTTAATCGTTGAC+GGG | + | chr1_4:39356495-39356514 | None:intergenic | 40.0% | |
| AACTTGACCACATGCTTAAG+CGG | - | chr1_4:39356506-39356525 | Msa0162440:intron | 40.0% | |
| ! | ATGGTGCGACACTTGATAAT+CGG | + | chr1_4:39356532-39356551 | None:intergenic | 40.0% |
| ! | TATCAAGTGTCGCACCATAT+CGG | - | chr1_4:39356534-39356553 | Msa0162440:intron | 40.0% |
| TGTGACTATTTGCAGGACAA+TGG | - | chr1_4:39356837-39356856 | Msa0162440:intron | 40.0% | |
| GGTTGAGATGCTTCATTCTT+GGG | + | chr1_4:39356973-39356992 | None:intergenic | 40.0% | |
| AGCGCATATAATACGTGCAT+GGG | + | chr1_4:39357126-39357145 | None:intergenic | 40.0% | |
| AAGCGCATATAATACGTGCA+TGG | + | chr1_4:39357127-39357146 | None:intergenic | 40.0% | |
| GCACGTATTATATGCGCTTA+CGG | - | chr1_4:39357128-39357147 | Msa0162440:intron | 40.0% | |
| GTCAATTCATGTTAGGAACC+TGG | - | chr1_4:39357412-39357431 | Msa0162440:CDS | 40.0% | |
| GAAGTTGTGCCCTTCAAATT+TGG | + | chr1_4:39357490-39357509 | None:intergenic | 40.0% | |
| GGAATGTAAGGCTCTTTGAA+AGG | + | chr1_4:39357537-39357556 | None:intergenic | 40.0% | |
| CTGATTTCGATGGGAATGTA+AGG | + | chr1_4:39357549-39357568 | None:intergenic | 40.0% | |
| !! | GCTATGAAGAAAAGCACTGA+TGG | - | chr1_4:39357580-39357599 | Msa0162440:CDS | 40.0% |
| AACAAATGCAGCCACTATTG+AGG | + | chr1_4:39358008-39358027 | None:intergenic | 40.0% | |
| ! | TGCCTCAATATCATGGATTG+TGG | - | chr1_4:39358035-39358054 | Msa0162440:intron | 40.0% |
| GGGTTTGAATTCTGATCAAC+AGG | + | chr1_4:39358277-39358296 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | chr1_4:39358316-39358335 | None:intergenic | 40.0% | |
| ! | CTCTGGATTTTCCTTCAGAT+TGG | - | chr1_4:39358509-39358528 | Msa0162440:intron | 40.0% |
| ! | GTTTTCATTGGCAGCTCTTT+AGG | - | chr1_4:39358756-39358775 | Msa0162440:intron | 40.0% |
| ATTTCTTGATCTCTGCCTCT+TGG | + | chr1_4:39358824-39358843 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | chr1_4:39358882-39358901 | None:intergenic | 40.0% | |
| ! | TTCCAAGCTTCGGTGATTTT+GGG | + | chr1_4:39359030-39359049 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+CGG | + | chr1_4:39359040-39359059 | None:intergenic | 40.0% |
| TTTCTCATGTGGGATAGAAC+TGG | + | chr1_4:39359095-39359114 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | chr1_4:39359123-39359142 | Msa0162440:intron | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | chr1_4:39359130-39359149 | Msa0162440:intron | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | chr1_4:39359137-39359156 | None:intergenic | 40.0% |
| TCAAGCCAAGGTACAATCTA+AGG | - | chr1_4:39359192-39359211 | Msa0162440:intron | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | chr1_4:39359201-39359220 | Msa0162440:intron | 40.0% | |
| !! | TTTCTGGTGTGGAAGCATTA+AGG | + | chr1_4:39359417-39359436 | None:intergenic | 40.0% |
| !! | ATAGGATACAGTTTCTGGTG+TGG | + | chr1_4:39359428-39359447 | None:intergenic | 40.0% |
| TGTATCCTATGAAGTTGCTG+TGG | - | chr1_4:39359438-39359457 | Msa0162440:five_prime_UTR | 40.0% | |
| GTATCCTATGAAGTTGCTGT+GGG | - | chr1_4:39359439-39359458 | Msa0162440:five_prime_UTR | 40.0% | |
| TTGTGGAGAGAAAGCTCAAG+TGG | + | chr1_4:39355520-39355539 | None:intergenic | 45.0% | |
| ATTGCATGATCGGACCGATA+TGG | + | chr1_4:39356551-39356570 | None:intergenic | 45.0% | |
| GGGTTGAGATGCTTCATTCT+TGG | + | chr1_4:39356974-39356993 | None:intergenic | 45.0% | |
| ! | CAAGACGAGCTGATTTCGAT+GGG | + | chr1_4:39357558-39357577 | None:intergenic | 45.0% |
| ! | TCAAGACGAGCTGATTTCGA+TGG | + | chr1_4:39357559-39357578 | None:intergenic | 45.0% |
| ! | CTTTTGGCAACTGCATTCAC+TGG | + | chr1_4:39357875-39357894 | None:intergenic | 45.0% |
| ACATTGATGCCTCAGATGTC+TGG | + | chr1_4:39357898-39357917 | None:intergenic | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | chr1_4:39358040-39358059 | None:intergenic | 45.0% | |
| CAGTCACGTGGAAAACCATA+AGG | + | chr1_4:39358250-39358269 | None:intergenic | 45.0% | |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | chr1_4:39358297-39358316 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | chr1_4:39358298-39358317 | None:intergenic | 45.0% |
| GCAATCAGAAGTCTTACTCC+TGG | - | chr1_4:39358471-39358490 | Msa0162440:intron | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | chr1_4:39358486-39358505 | Msa0162440:intron | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | chr1_4:39358523-39358542 | None:intergenic | 45.0% | |
| !! | TTTTTGGCAGGAAAGCCAAG+AGG | - | chr1_4:39358806-39358825 | Msa0162440:intron | 45.0% |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | chr1_4:39358900-39358919 | None:intergenic | 45.0% |
| ! | CTTCCAAGCTTCGGTGATTT+TGG | + | chr1_4:39359031-39359050 | None:intergenic | 45.0% |
| CCGAAGCTTGGAAGAAACAA+AGG | - | chr1_4:39359037-39359056 | Msa0162440:intron | 45.0% | |
| TGTCATGTCTTCCACAAACG+AGG | - | chr1_4:39359246-39359265 | Msa0162440:intron | 45.0% | |
| AATCACTGAGACCTCGTTTG+TGG | + | chr1_4:39359260-39359279 | None:intergenic | 45.0% | |
| TCTTGCTCAGAACAGTGTGT+TGG | - | chr1_4:39359390-39359409 | Msa0162440:intron | 45.0% | |
| AACTCCCACAGCAACTTCAT+AGG | + | chr1_4:39359446-39359465 | None:intergenic | 45.0% | |
| GTTGCTGTGGGAGTTTAGAT+TGG | - | chr1_4:39359451-39359470 | Msa0162440:five_prime_UTR | 45.0% | |
| ACAGTGTCCCTTCAATCAGA+AGG | + | chr1_4:39359686-39359705 | None:intergenic | 45.0% | |
| !!! | ATTTATAATACTTTTTTTTT+TGG | - | chr1_4:39356327-39356346 | Msa0162440:intron | 5.0% |
| !! | TATCATAAATAAAAATTAAA+AGG | - | chr1_4:39356595-39356614 | Msa0162440:CDS | 5.0% |
| !! | TTTATAATTTAGTAAATATT+GGG | + | chr1_4:39358092-39358111 | None:intergenic | 5.0% |
| !! | ATTTATAATTTAGTAAATAT+TGG | + | chr1_4:39358093-39358112 | None:intergenic | 5.0% |
| !! | GCTAGCAAAGCATTGAGGTG+AGG | + | chr1_4:39355361-39355380 | None:intergenic | 50.0% |
| TAATCGGCCGCTTAAGCATG+TGG | + | chr1_4:39356516-39356535 | None:intergenic | 50.0% | |
| TTGCACGGTGTGGCCTATTA+CGG | + | chr1_4:39357090-39357109 | None:intergenic | 50.0% | |
| ! | GCAACAACGCTTTTGACACC+AGG | + | chr1_4:39357433-39357452 | None:intergenic | 50.0% |
| TGCCAAAAGCCAGACATCTG+AGG | - | chr1_4:39357886-39357905 | Msa0162440:intron | 50.0% | |
| !!! | TGCCTCAGATGTCTGGCTTT+TGG | + | chr1_4:39357891-39357910 | None:intergenic | 50.0% |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | chr1_4:39358536-39358555 | Msa0162440:intron | 50.0% | |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | chr1_4:39359019-39359038 | None:intergenic | 50.0% |
| CGCGGTCACGAAAACAGAAA+TGG | - | chr1_4:39359219-39359238 | Msa0162440:intron | 50.0% | |
| CTGGCGTAGACCTTCCAAAC+TGG | + | chr1_4:39357856-39357875 | None:intergenic | 55.0% | |
| TCAACAGGTCTGCAGTCACG+TGG | + | chr1_4:39358262-39358281 | None:intergenic | 55.0% | |
| GAGCCGTTGCTCTTCTTACC+AGG | + | chr1_4:39358492-39358511 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | chr1_4:39358492-39358511 | Msa0162440:intron | 55.0% | |
| CGCCCAAAATCACCGAAGCT+TGG | - | chr1_4:39359025-39359044 | Msa0162440:intron | 55.0% | |
| TAGGCCACACCGTGCAACCT+CGG | - | chr1_4:39357093-39357112 | Msa0162440:intron | 60.0% | |
| GGTCATCAGCCGAGGTTGCA+CGG | + | chr1_4:39357105-39357124 | None:intergenic | 60.0% | |
| GGGAGTTGGGATTGCTGTCG+TGG | + | chr1_4:39358072-39358091 | None:intergenic | 60.0% | |
| TCAGCCGAGGTTGCACGGTG+TGG | + | chr1_4:39357100-39357119 | None:intergenic | 65.0% | |
| CGTGCATGGGTCATCAGCCG+AGG | + | chr1_4:39357113-39357132 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39355342 | 39359757 | 39355342 | ID=Msa0162440;Name=Msa0162440 |
| chr1_4 | mRNA | 39355342 | 39359757 | 39355342 | ID=Msa0162440-mRNA-1;Parent=Msa0162440;Name=Msa0162440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=368|1|1|1|0.87|0.77|9|289|458 |
| chr1_4 | exon | 39355342 | 39356086 | 39355342 | ID=Msa0162440-mRNA-1:exon:11436;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39356176 | 39356283 | 39356176 | ID=Msa0162440-mRNA-1:exon:11435;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39356390 | 39356461 | 39356390 | ID=Msa0162440-mRNA-1:exon:11434;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39356542 | 39356620 | 39356542 | ID=Msa0162440-mRNA-1:exon:11433;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39356749 | 39356826 | 39356749 | ID=Msa0162440-mRNA-1:exon:11432;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39357184 | 39357242 | 39357184 | ID=Msa0162440-mRNA-1:exon:11431;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39357343 | 39357672 | 39357343 | ID=Msa0162440-mRNA-1:exon:11430;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39358049 | 39358247 | 39358049 | ID=Msa0162440-mRNA-1:exon:11429;Parent=Msa0162440-mRNA-1 |
| chr1_4 | exon | 39359394 | 39359757 | 39359394 | ID=Msa0162440-mRNA-1:exon:11428;Parent=Msa0162440-mRNA-1 |
| chr1_4 | five_prime_UTR | 39359394 | 39359757 | 39359394 | ID=Msa0162440-mRNA-1:five_prime_utr;Parent=Msa0162440-mRNA-1 |
| chr1_4 | five_prime_UTR | 39358244 | 39358247 | 39358244 | ID=Msa0162440-mRNA-1:five_prime_utr;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39358049 | 39358243 | 39358049 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39357343 | 39357672 | 39357343 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39357184 | 39357242 | 39357184 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39356749 | 39356826 | 39356749 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39356542 | 39356620 | 39356542 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39356390 | 39356461 | 39356390 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39356176 | 39356283 | 39356176 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | CDS | 39355631 | 39356086 | 39355631 | ID=Msa0162440-mRNA-1:cds;Parent=Msa0162440-mRNA-1 |
| chr1_4 | three_prime_UTR | 39355342 | 39355630 | 39355342 | ID=Msa0162440-mRNA-1:three_prime_utr;Parent=Msa0162440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
