Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071100 | XP_013467790.1 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 839 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071100 | sp|Q9SJ62|WDL4_ARATH | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.45e-50 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071100 | A0A072VJ58 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023340 | Msa0071100 | 0.825922 | 3.599583e-54 | -8.615850e-47 |
| Msa0036890 | Msa0071100 | 0.814426 | 1.549902e-51 | -8.615850e-47 |
| Msa0071100 | Msa0084970 | 0.821759 | 3.403740e-53 | -8.615850e-47 |
| Msa0071100 | Msa0119100 | 0.812099 | 5.026755e-51 | -8.615850e-47 |
| Msa0071100 | Msa0130990 | 0.816897 | 4.362933e-52 | -8.615850e-47 |
| Msa0071100 | Msa0162440 | 0.996968 | 7.158721e-235 | -8.615850e-47 |
| Msa0071100 | Msa0312530 | 0.802567 | 5.278103e-49 | -8.615850e-47 |
| Msa0071100 | Msa0870540 | 0.816352 | 5.780206e-52 | -8.615850e-47 |
| Msa0071100 | Msa0993740 | 0.816420 | 5.580677e-52 | -8.615850e-47 |
| Msa0071100 | Msa1085330 | 0.841699 | 4.056493e-58 | -8.615850e-47 |
| Msa0071100 | Msa1348090 | 0.817278 | 3.582747e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071100 | MtrunA17_Chr1g0176611 | 94.118 | 459 | 19 | 3 | 1 | 458 | 1 | 452 | 0.0 | 839 |
| Msa0071100 | MtrunA17_Chr7g0267791 | 49.894 | 471 | 173 | 13 | 1 | 458 | 1 | 421 | 7.25e-113 | 338 |
| Msa0071100 | MtrunA17_Chr3g0137761 | 45.413 | 218 | 84 | 7 | 233 | 419 | 210 | 423 | 1.73e-40 | 150 |
| Msa0071100 | MtrunA17_Chr1g0149361 | 78.495 | 93 | 19 | 1 | 233 | 324 | 227 | 319 | 1.71e-39 | 148 |
| Msa0071100 | MtrunA17_Chr1g0187121 | 61.290 | 93 | 35 | 1 | 231 | 322 | 213 | 305 | 2.52e-27 | 112 |
| Msa0071100 | MtrunA17_Chr1g0190551 | 47.794 | 136 | 61 | 3 | 207 | 332 | 162 | 297 | 1.42e-25 | 107 |
| Msa0071100 | MtrunA17_Chr7g0274281 | 56.989 | 93 | 39 | 1 | 231 | 322 | 208 | 300 | 3.91e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071100 | AT2G35880.3 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0071100 | AT2G35880.2 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0071100 | AT2G35880.1 | 44.771 | 306 | 111 | 10 | 102 | 374 | 93 | 373 | 1.48e-51 | 180 |
| Msa0071100 | AT4G32330.2 | 46.448 | 183 | 89 | 5 | 149 | 322 | 113 | 295 | 7.37e-36 | 138 |
| Msa0071100 | AT4G32330.1 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0071100 | AT4G32330.4 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0071100 | AT4G32330.3 | 46.237 | 186 | 86 | 5 | 149 | 322 | 113 | 296 | 1.88e-35 | 137 |
| Msa0071100 | AT2G25480.1 | 70.330 | 91 | 26 | 1 | 233 | 322 | 181 | 271 | 7.67e-34 | 131 |
| Msa0071100 | AT2G25480.2 | 70.330 | 91 | 26 | 1 | 233 | 322 | 182 | 272 | 7.72e-34 | 131 |
| Msa0071100 | AT5G28646.3 | 47.794 | 136 | 68 | 2 | 187 | 319 | 34 | 169 | 8.88e-27 | 107 |
| Msa0071100 | AT5G28646.2 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.90e-26 | 106 |
| Msa0071100 | AT5G28646.1 | 51.282 | 117 | 54 | 2 | 206 | 319 | 57 | 173 | 1.90e-26 | 106 |
| Msa0071100 | AT3G04630.1 | 51.754 | 114 | 47 | 3 | 213 | 318 | 99 | 212 | 2.52e-25 | 105 |
| Msa0071100 | AT3G04630.3 | 51.754 | 114 | 47 | 3 | 213 | 318 | 103 | 216 | 2.61e-25 | 105 |
| Msa0071100 | AT3G04630.2 | 51.754 | 114 | 47 | 3 | 213 | 318 | 98 | 211 | 2.78e-25 | 105 |
| Msa0071100 | AT3G23090.5 | 53.448 | 116 | 47 | 2 | 212 | 320 | 167 | 282 | 4.85e-25 | 105 |
| Msa0071100 | AT3G23090.1 | 53.448 | 116 | 47 | 2 | 212 | 320 | 166 | 281 | 5.11e-25 | 105 |
| Msa0071100 | AT3G23090.4 | 53.448 | 116 | 47 | 2 | 212 | 320 | 202 | 317 | 7.28e-25 | 105 |
| Msa0071100 | AT3G23090.2 | 51.667 | 120 | 47 | 3 | 212 | 320 | 166 | 285 | 4.87e-24 | 103 |
| Msa0071100 | AT3G23090.3 | 51.667 | 120 | 47 | 3 | 212 | 320 | 202 | 321 | 8.23e-24 | 103 |
| Msa0071100 | AT1G54460.1 | 54.839 | 93 | 41 | 1 | 231 | 322 | 162 | 254 | 3.00e-21 | 95.1 |
| Msa0071100 | AT1G70950.1 | 55.000 | 80 | 33 | 2 | 218 | 296 | 313 | 390 | 1.92e-16 | 82.0 |
Find 93 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAAGCTTCGGTGATTT+TGG | 0.078087 | 1_2:+42555750 | None:intergenic |
| TAGCTTCTTATTAAGAAATA+TGG | 0.189804 | 1_2:-42555058 | Msa0071100:three_prime_UTR |
| ACTTCATAGGATACAGTTTC+TGG | 0.228034 | 1_2:+42555348 | None:intergenic |
| ATTCTTGTTCTATCCCATTC+TGG | 0.233527 | 1_2:+42555421 | None:intergenic |
| TTATGGTACCTTGGAACTTT+TGG | 0.246711 | 1_2:+42557709 | None:intergenic |
| TAATGAAATAACTGGTAAAA+AGG | 0.248214 | 1_2:+42555266 | None:intergenic |
| GAAGTTGTGCCCTTCAAATT+TGG | 0.258397 | 1_2:+42557291 | None:intergenic |
| GGGTTGAGATGCTTCATTCT+TGG | 0.262885 | 1_2:+42557775 | None:intergenic |
| TGCCTCAGATGTCTGGCTTT+TGG | 0.269501 | 1_2:+42556890 | None:intergenic |
| TTGCTATCAATTTCTACTTT+GGG | 0.283046 | 1_2:+42557755 | None:intergenic |
| GGTTGAGATGCTTCATTCTT+GGG | 0.299174 | 1_2:+42557776 | None:intergenic |
| TCCAAAAGTTGAGCTGAAAA+AGG | 0.320761 | 1_2:-42555876 | Msa0071100:intron |
| TCAACCAAGGCAAAGGTAAA+AGG | 0.328570 | 1_2:-42555648 | Msa0071100:CDS |
| TTTCTGGTGTGGAAGCATTA+AGG | 0.334990 | 1_2:+42555364 | None:intergenic |
| TCAAGCCAAGGTACAATCTA+AGG | 0.340660 | 1_2:-42555586 | Msa0071100:CDS |
| GAAGATGAGAAGCATGTTAT+TGG | 0.347674 | 1_2:-42557863 | Msa0071100:CDS |
| TCCAATGCCAAGTTTCTATA+AGG | 0.350934 | 1_2:-42555906 | Msa0071100:CDS |
| GTTGCTATCAATTTCTACTT+TGG | 0.352478 | 1_2:+42557754 | None:intergenic |
| CACAATAATAATGAAATAAC+TGG | 0.358013 | 1_2:+42555258 | None:intergenic |
| GTCTCTCAAACAAGTTTAAG+AGG | 0.388918 | 1_2:-42559062 | Msa0071100:intron |
| AGAAGAGAAAATTCAGGAAA+AGG | 0.396372 | 1_2:-42556126 | Msa0071100:CDS |
| ATTTCTTGATCTCTGCCTCT+TGG | 0.396749 | 1_2:+42555957 | None:intergenic |
| CCTTTGTTTCTTCCAAGCTT+CGG | 0.397619 | 1_2:+42555741 | None:intergenic |
| CTTCAAATTTGGTTTAACTT+TGG | 0.403096 | 1_2:+42557302 | None:intergenic |
| GGGTTTGAATTCTGATCAAC+AGG | 0.407116 | 1_2:+42556504 | None:intergenic |
| ATCTGAAAATGAAGTTGTTA+TGG | 0.408821 | 1_2:-42557885 | Msa0071100:CDS |
| TTTCTCATGTGGGATAGAAC+TGG | 0.409624 | 1_2:+42555686 | None:intergenic |
| ACATTGATGCCTCAGATGTC+TGG | 0.410213 | 1_2:+42556883 | None:intergenic |
| TTCTTCTGTTGTTTCTCATG+TGG | 0.415183 | 1_2:+42555675 | None:intergenic |
| CGCGGTCACGAAAACAGAAA+TGG | 0.415791 | 1_2:-42555559 | Msa0071100:CDS |
| ACATCGTCATCTTCTCTGTT+CGG | 0.419497 | 1_2:+42556465 | None:intergenic |
| AATGACAGTTACATATTTGA+GGG | 0.429031 | 1_2:-42559333 | Msa0071100:five_prime_UTR |
| CAAATTTGGTTTAACTTTGG+TGG | 0.435552 | 1_2:+42557305 | None:intergenic |
| TCTTCTGTTGTTTCTCATGT+GGG | 0.442092 | 1_2:+42555676 | None:intergenic |
| AACTGAAGTTGGTGATACTA+AGG | 0.445260 | 1_2:+42559187 | None:intergenic |
| TTTATGTATGTGTTCTACCT+TGG | 0.453122 | 1_2:+42557832 | None:intergenic |
| CAATGACAGTTACATATTTG+AGG | 0.456998 | 1_2:-42559334 | Msa0071100:five_prime_UTR |
| GAGTTTAGATTGGTGTATCA+AGG | 0.458663 | 1_2:-42555317 | Msa0071100:exon |
| GGTAAGAAGAGCAACGGCTC+TGG | 0.461766 | 1_2:-42556286 | Msa0071100:CDS |
| ATATTTCTGAATACCAGAAT+GGG | 0.468042 | 1_2:-42555434 | Msa0071100:CDS |
| CGCCCAAAATCACCGAAGCT+TGG | 0.469539 | 1_2:-42555753 | Msa0071100:CDS |
| AATATTTCTGAATACCAGAA+TGG | 0.470112 | 1_2:-42555435 | Msa0071100:CDS |
| GAGCCGTTGCTCTTCTTACC+AGG | 0.472493 | 1_2:+42556289 | None:intergenic |
| GTTGCTGTGGGAGTTTAGAT+TGG | 0.474271 | 1_2:-42555327 | Msa0071100:exon |
| CATTATTATTGTGAATATAG+AGG | 0.476292 | 1_2:-42555248 | Msa0071100:three_prime_UTR |
| CAGTTACATATTTGAGGGAG+TGG | 0.477152 | 1_2:-42559328 | Msa0071100:five_prime_UTR |
| AACTCCCACAGCAACTTCAT+AGG | 0.482114 | 1_2:+42555335 | None:intergenic |
| TCCTTATAGAAACTTGGCAT+TGG | 0.483568 | 1_2:+42555905 | None:intergenic |
| CAAAGTTAAACCAAATTTGA+AGG | 0.485184 | 1_2:-42557301 | Msa0071100:CDS |
| CTGATTTCGATGGGAATGTA+AGG | 0.485692 | 1_2:+42557232 | None:intergenic |
| AGCTCGTTCTTCCAATCTGA+AGG | 0.486684 | 1_2:+42556258 | None:intergenic |
| AATCACTGAGACCTCGTTTG+TGG | 0.511682 | 1_2:+42555521 | None:intergenic |
| GGAGGTTCCTTATAGAAACT+TGG | 0.520048 | 1_2:+42555899 | None:intergenic |
| GTGATAGTTGAACTTGAAGA+TGG | 0.522631 | 1_2:+42559163 | None:intergenic |
| GTCAATTCATGTTAGGAACC+TGG | 0.523313 | 1_2:-42557366 | Msa0071100:intron |
| AAAGTTAGAAGAGAAAATTC+AGG | 0.529661 | 1_2:-42556132 | Msa0071100:CDS |
| TTCTTTGCAAGAGTGATTTG+TGG | 0.537588 | 1_2:+42559212 | None:intergenic |
| GGAATGTAAGGCTCTTTGAA+AGG | 0.548770 | 1_2:+42557244 | None:intergenic |
| AAAGTTAAACCAAATTTGAA+GGG | 0.551958 | 1_2:-42557300 | Msa0071100:CDS |
| TCAAGACGAGCTGATTTCGA+TGG | 0.562565 | 1_2:+42557222 | None:intergenic |
| TGTGACTATTTGCAGGACAA+TGG | 0.564635 | 1_2:-42557909 | Msa0071100:intron |
| GAATGATTCAACCAAGGCAA+AGG | 0.571396 | 1_2:-42555655 | Msa0071100:CDS |
| GATTTCCTTAGATTGTACCT+TGG | 0.572341 | 1_2:+42555581 | None:intergenic |
| TTGAAGATGGAAACTGAAGT+TGG | 0.581322 | 1_2:+42559176 | None:intergenic |
| CTATGAAGAAAAGCACTGAT+GGG | 0.582170 | 1_2:-42557197 | Msa0071100:CDS |
| ATACTATCTACCAGTTTGGA+AGG | 0.583340 | 1_2:-42556935 | Msa0071100:intron |
| AAGAAAGTTGACAAACTCAA+AGG | 0.583844 | 1_2:-42557118 | Msa0071100:CDS |
| ACAGTGTCCCTTCAATCAGA+AGG | 0.585170 | 1_2:+42555095 | None:intergenic |
| CCGAAGCTTGGAAGAAACAA+AGG | 0.587414 | 1_2:-42555741 | Msa0071100:CDS |
| TTGTGGAGAGAAAGCTCAAG+TGG | 0.589092 | 1_2:+42559229 | None:intergenic |
| GCAATCAGAAGTCTTACTCC+TGG | 0.589797 | 1_2:-42556307 | Msa0071100:intron |
| ATAGGATACAGTTTCTGGTG+TGG | 0.593998 | 1_2:+42555353 | None:intergenic |
| CAAGACGAGCTGATTTCGAT+GGG | 0.596069 | 1_2:+42557223 | None:intergenic |
| GCTATGAAGAAAAGCACTGA+TGG | 0.596407 | 1_2:-42557198 | Msa0071100:CDS |
| TGTATCCTATGAAGTTGCTG+TGG | 0.597144 | 1_2:-42555340 | Msa0071100:CDS |
| TGAATTAAGAGTTGAAGTCA+CGG | 0.602729 | 1_2:+42557140 | None:intergenic |
| ACGAGCTGAAAAGCGAAGAG+AGG | 0.612842 | 1_2:-42556242 | Msa0071100:intron |
| GCTAGCAAAGCATTGAGGTG+AGG | 0.629634 | 1_2:+42559388 | None:intergenic |
| CATAAAGAAGTTGAAGACAA+TGG | 0.630212 | 1_2:-42557815 | Msa0071100:CDS |
| ACAATGGAAACTCTAAACAA+AGG | 0.631858 | 1_2:-42557083 | Msa0071100:CDS |
| ATAGAACAAGAATCACAGAA+TGG | 0.634173 | 1_2:-42555411 | Msa0071100:CDS |
| TATTCAGAAATATTAACAGA+AGG | 0.636984 | 1_2:+42555444 | None:intergenic |
| TGTCATGTCTTCCACAAACG+AGG | 0.638979 | 1_2:-42555532 | Msa0071100:CDS |
| GTATCCTATGAAGTTGCTGT+GGG | 0.642363 | 1_2:-42555339 | Msa0071100:CDS |
| TCTTGCTCAGAACAGTGTGT+TGG | 0.650728 | 1_2:-42555388 | Msa0071100:CDS |
| TGCCAAAAGCCAGACATCTG+AGG | 0.654628 | 1_2:-42556892 | Msa0071100:CDS |
| TAATCTGCAAGAGAAATCAA+AGG | 0.655226 | 1_2:-42556090 | Msa0071100:intron |
| AAAGTTGACAAACTCAAAGG+AGG | 0.655478 | 1_2:-42557115 | Msa0071100:CDS |
| ACTCCTGGTAAGAAGAGCAA+CGG | 0.659089 | 1_2:-42556292 | Msa0071100:CDS |
| GGTACAATCTAAGGAAATCG+CGG | 0.672899 | 1_2:-42555577 | Msa0071100:CDS |
| AAATAGCTTTAAAAGCTCTG+AGG | 0.685220 | 1_2:-42557043 | Msa0071100:intron |
| ACAGAAGAATGATTCAACCA+AGG | 0.689453 | 1_2:-42555661 | Msa0071100:CDS |
| TGTTATTGGTGAAACAACCA+AGG | 0.697770 | 1_2:-42557849 | Msa0071100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTTGATTTT+TGG | - | chr1_2:42558459-42558478 | Msa0071100:intron | 10.0% |
| !!! | AAACTTTCATATTTTCAAAT+AGG | + | chr1_2:42555878-42555897 | None:intergenic | 15.0% |
| !!! | ATTTGAAAATATGAAAGTTT+TGG | - | chr1_2:42555878-42555897 | Msa0071100:CDS | 15.0% |
| !!! | ATATTTTTGAACTACAAAAT+CGG | - | chr1_2:42555911-42555930 | Msa0071100:CDS | 15.0% |
| !!! | TAAATACTTGATCTAAAATA+TGG | + | chr1_2:42556083-42556102 | None:intergenic | 15.0% |
| !!! | ATTTTAGATCAAGTATTTAA+TGG | - | chr1_2:42556084-42556103 | Msa0071100:intron | 15.0% |
| !!! | ATGAAAACAAAATATTGATT+TGG | + | chr1_2:42556882-42556901 | None:intergenic | 15.0% |
| !!! | TATAAATCAATCTTTAAAGT+TGG | - | chr1_2:42557775-42557794 | Msa0071100:CDS | 15.0% |
| !! | ATGAATTCATATATATCTTT+AGG | - | chr1_2:42557856-42557875 | Msa0071100:CDS | 15.0% |
| !! | AAATTTCATGAATCTATTAT+AGG | + | chr1_2:42558111-42558130 | None:intergenic | 15.0% |
| !! | ATTAATCAAAATTACAGCAT+TGG | - | chr1_2:42555736-42555755 | Msa0071100:CDS | 20.0% |
| !! | TTAATCAAAATTACAGCATT+GGG | - | chr1_2:42555737-42555756 | Msa0071100:CDS | 20.0% |
| !!! | AAAATTTTCTTACGATTTCA+TGG | + | chr1_2:42555996-42556015 | None:intergenic | 20.0% |
| !!! | ATTTTAAAATTTGACGGTTT+GGG | + | chr1_2:42556114-42556133 | None:intergenic | 20.0% |
| !!! | TATTTTAAAATTTGACGGTT+TGG | + | chr1_2:42556115-42556134 | None:intergenic | 20.0% |
| !!! | CTCACTATTTTAAAATTTGA+CGG | + | chr1_2:42556120-42556139 | None:intergenic | 20.0% |
| !!! | TGTATTTTGTAATTTGATTC+AGG | - | chr1_2:42556446-42556465 | Msa0071100:intron | 20.0% |
| !! | AAAACAAAACAAATTGTGTT+TGG | - | chr1_2:42556478-42556497 | Msa0071100:CDS | 20.0% |
| !! | TAATTATGATACATTGCTTA+TGG | + | chr1_2:42556758-42556777 | None:intergenic | 20.0% |
| !! | CGTATTATATGTATAACTTA+TGG | - | chr1_2:42556832-42556851 | Msa0071100:intron | 20.0% |
| !! | AAACTATCATGAAAATCTTA+TGG | - | chr1_2:42556925-42556944 | Msa0071100:intron | 20.0% |
| !! | AAAGTTAAACCAAATTTGAA+GGG | - | chr1_2:42557147-42557166 | Msa0071100:CDS | 20.0% |
| !!! | TAATTTAAAACGATACAGTT+TGG | + | chr1_2:42557602-42557621 | None:intergenic | 20.0% |
| !!! | AACTGTATCGTTTTAAATTA+TGG | - | chr1_2:42557602-42557621 | Msa0071100:intron | 20.0% |
| !! | TTAAACTATTATGTCTCATT+AGG | - | chr1_2:42558036-42558055 | Msa0071100:intron | 20.0% |
| !! | TATAGAAAAAGAAGAAAGAA+TGG | + | chr1_2:42558081-42558100 | None:intergenic | 20.0% |
| !! | TTCAATATCAATATGCTTTA+AGG | + | chr1_2:42558243-42558262 | None:intergenic | 20.0% |
| !!! | CTTAGATATTTTTTTCCATA+TGG | - | chr1_2:42558397-42558416 | Msa0071100:intron | 20.0% |
| !! | ATCAAACTATATATTGTTAG+AGG | + | chr1_2:42558602-42558621 | None:intergenic | 20.0% |
| !! | AAATACAACAGTATAAGAAA+TGG | + | chr1_2:42558648-42558667 | None:intergenic | 20.0% |
| !! | TATTCAGAAATATTAACAGA+AGG | + | chr1_2:42559006-42559025 | None:intergenic | 20.0% |
| !! | TAATGAAATAACTGGTAAAA+AGG | + | chr1_2:42559184-42559203 | None:intergenic | 20.0% |
| !! | CACAATAATAATGAAATAAC+TGG | + | chr1_2:42559192-42559211 | None:intergenic | 20.0% |
| !! | CATTATTATTGTGAATATAG+AGG | - | chr1_2:42559199-42559218 | Msa0071100:five_prime_UTR | 20.0% |
| !! | TAGCTTCTTATTAAGAAATA+TGG | - | chr1_2:42559389-42559408 | Msa0071100:five_prime_UTR | 20.0% |
| ! | AATGACAGTTACATATTTGA+GGG | - | chr1_2:42555114-42555133 | Msa0071100:three_prime_UTR | 25.0% |
| !!! | TAAGCTAGTTTTCAATGAAT+TGG | + | chr1_2:42555195-42555214 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGTAAGTGCTTT+TGG | + | chr1_2:42555324-42555343 | None:intergenic | 25.0% |
| ! | AGAATTTGAATTCAGATTTG+TGG | - | chr1_2:42555652-42555671 | Msa0071100:CDS | 25.0% |
| !!! | AATTTTGATTAATCTCCTCA+AGG | + | chr1_2:42555729-42555748 | None:intergenic | 25.0% |
| !! | CTTTCATATTTTCAAATAGG+AGG | + | chr1_2:42555875-42555894 | None:intergenic | 25.0% |
| ! | GTAGTTCAAAAATATGATGA+AGG | + | chr1_2:42555906-42555925 | None:intergenic | 25.0% |
| !! | ATAGTGAGCTTAATTTTACA+AGG | - | chr1_2:42556132-42556151 | Msa0071100:CDS | 25.0% |
| !!! | TGCTAACTTCTTTTTTTTAG+AGG | + | chr1_2:42556346-42556365 | None:intergenic | 25.0% |
| ! | CTAAAAAAAAGAAGTTAGCA+TGG | - | chr1_2:42556346-42556365 | Msa0071100:intron | 25.0% |
| !! | ACTTAAACCAAACATGTTTT+AGG | - | chr1_2:42556369-42556388 | Msa0071100:intron | 25.0% |
| ! | CAAATAGTCACAAAAAATAG+AGG | + | chr1_2:42556530-42556549 | None:intergenic | 25.0% |
| !!! | TATTTTTTGTGACTATTTGC+AGG | - | chr1_2:42556531-42556550 | Msa0071100:intron | 25.0% |
| ! | ATCTGAAAATGAAGTTGTTA+TGG | - | chr1_2:42556562-42556581 | Msa0071100:intron | 25.0% |
| ! | TTGCTATCAATTTCTACTTT+GGG | + | chr1_2:42556695-42556714 | None:intergenic | 25.0% |
| ! | TTATATAGCAAATCCGTAAT+AGG | - | chr1_2:42556775-42556794 | Msa0071100:intron | 25.0% |
| ! | TATACATATAATACGTGCAT+GGG | + | chr1_2:42556827-42556846 | None:intergenic | 25.0% |
| ! | TTATACATATAATACGTGCA+TGG | + | chr1_2:42556828-42556847 | None:intergenic | 25.0% |
| ! | ATTATGTGCTTTGACATATT+TGG | + | chr1_2:42557054-42557073 | None:intergenic | 25.0% |
| !! | CTTCAAATTTGGTTTAACTT+TGG | + | chr1_2:42557148-42557167 | None:intergenic | 25.0% |
| ! | CAAAGTTAAACCAAATTTGA+AGG | - | chr1_2:42557146-42557165 | Msa0071100:CDS | 25.0% |
| ! | ATAGCTTCTTTACATTTCAT+TGG | - | chr1_2:42557469-42557488 | Msa0071100:intron | 25.0% |
| ! | TTTAGTAAATATTGGGAGTT+GGG | + | chr1_2:42557754-42557773 | None:intergenic | 25.0% |
| ! | ATTTAGTAAATATTGGGAGT+TGG | + | chr1_2:42557755-42557774 | None:intergenic | 25.0% |
| !!! | CATCAATACATTTTAGTCTA+AGG | - | chr1_2:42557817-42557836 | Msa0071100:CDS | 25.0% |
| ! | AAAGTTAGAAGAGAAAATTC+AGG | - | chr1_2:42558315-42558334 | Msa0071100:intron | 25.0% |
| !!! | TTTTTCTTTTGATTTTTGGC+AGG | - | chr1_2:42558463-42558482 | Msa0071100:intron | 25.0% |
| !! | AATATTTCTGAATACCAGAA+TGG | - | chr1_2:42559012-42559031 | Msa0071100:intron | 25.0% |
| !! | ATATTTCTGAATACCAGAAT+GGG | - | chr1_2:42559013-42559032 | Msa0071100:intron | 25.0% |
| CAATGACAGTTACATATTTG+AGG | - | chr1_2:42555113-42555132 | Msa0071100:three_prime_UTR | 30.0% | |
| !! | TTTTGTAAGTGCTTTTGGAA+TGG | + | chr1_2:42555319-42555338 | None:intergenic | 30.0% |
| ! | CTTCTTTGAAAATGAAAGCA+TGG | + | chr1_2:42555701-42555720 | None:intergenic | 30.0% |
| ATTTGACGAGATTAAGATTC+TGG | - | chr1_2:42556270-42556289 | Msa0071100:CDS | 30.0% | |
| CTATGTTCCTAAAACATGTT+TGG | + | chr1_2:42556379-42556398 | None:intergenic | 30.0% | |
| TTTATGTATGTGTTCTACCT+TGG | + | chr1_2:42556618-42556637 | None:intergenic | 30.0% | |
| CATAAAGAAGTTGAAGACAA+TGG | - | chr1_2:42556632-42556651 | Msa0071100:intron | 30.0% | |
| GTTGCTATCAATTTCTACTT+TGG | + | chr1_2:42556696-42556715 | None:intergenic | 30.0% | |
| TAAAAACTCCAAAAGTTCCA+AGG | - | chr1_2:42556730-42556749 | Msa0071100:intron | 30.0% | |
| ! | CAAATTTGGTTTAACTTTGG+TGG | + | chr1_2:42557145-42557164 | None:intergenic | 30.0% |
| TGAATTAAGAGTTGAAGTCA+CGG | + | chr1_2:42557310-42557329 | None:intergenic | 30.0% | |
| AAGAAAGTTGACAAACTCAA+AGG | - | chr1_2:42557329-42557348 | Msa0071100:CDS | 30.0% | |
| ACAATGGAAACTCTAAACAA+AGG | - | chr1_2:42557364-42557383 | Msa0071100:intron | 30.0% | |
| !! | AAATAGCTTTAAAAGCTCTG+AGG | - | chr1_2:42557404-42557423 | Msa0071100:intron | 30.0% |
| CTATCAAGCTACATAGAAAA+AGG | + | chr1_2:42557453-42557472 | None:intergenic | 30.0% | |
| TAGTATAGAAGTAATGAGCA+TGG | + | chr1_2:42557498-42557517 | None:intergenic | 30.0% | |
| TTCTATACTATCTACCAGTT+TGG | - | chr1_2:42557508-42557527 | Msa0071100:intron | 30.0% | |
| ! | TTGAAGCTGCATAACAATTT+TGG | + | chr1_2:42557635-42557654 | None:intergenic | 30.0% |
| TTCGTTCATCAGAAATATGT+TGG | + | chr1_2:42557890-42557909 | None:intergenic | 30.0% | |
| ATGAACGAATTATGACCTTA+TGG | - | chr1_2:42557901-42557920 | Msa0071100:intron | 30.0% | |
| CTGGATGAAAAGGATAAAAT+AGG | + | chr1_2:42558287-42558306 | None:intergenic | 30.0% | |
| TTGAGAAAAACTGGATGAAA+AGG | + | chr1_2:42558297-42558316 | None:intergenic | 30.0% | |
| ! | CTTCTAACTTTGAGAAAAAC+TGG | + | chr1_2:42558306-42558325 | None:intergenic | 30.0% |
| AGAAGAGAAAATTCAGGAAA+AGG | - | chr1_2:42558321-42558340 | Msa0071100:intron | 30.0% | |
| TAATCTGCAAGAGAAATCAA+AGG | - | chr1_2:42558357-42558376 | Msa0071100:intron | 30.0% | |
| CAATGAAAACTCAAACCATA+TGG | + | chr1_2:42558415-42558434 | None:intergenic | 30.0% | |
| !! | CATATGGTTTGAGTTTTCAT+TGG | - | chr1_2:42558413-42558432 | Msa0071100:intron | 30.0% |
| !!! | TTGGCTTGAGTTTTTTTGAT+TGG | + | chr1_2:42558850-42558869 | None:intergenic | 30.0% |
| AATCAAAAAAACTCAAGCCA+AGG | - | chr1_2:42558849-42558868 | Msa0071100:intron | 30.0% | |
| !!! | CTATACTTGTTTTTGCATCT+TGG | + | chr1_2:42558960-42558979 | None:intergenic | 30.0% |
| GCAAAAACAAGTATAGTTGA+AGG | - | chr1_2:42558964-42558983 | Msa0071100:intron | 30.0% | |
| ATAGAACAAGAATCACAGAA+TGG | - | chr1_2:42559036-42559055 | Msa0071100:intron | 30.0% | |
| ! | TGTTTTTCCTTCTGATTGAA+GGG | - | chr1_2:42559345-42559364 | Msa0071100:five_prime_UTR | 30.0% |
| !!! | TTTTTGCTAGCAAAGCATTG+AGG | + | chr1_2:42555067-42555086 | None:intergenic | 35.0% |
| TTCTTTGCAAGAGTGATTTG+TGG | + | chr1_2:42555238-42555257 | None:intergenic | 35.0% | |
| !! | AACTGAAGTTGGTGATACTA+AGG | + | chr1_2:42555263-42555282 | None:intergenic | 35.0% |
| TTGAAGATGGAAACTGAAGT+TGG | + | chr1_2:42555274-42555293 | None:intergenic | 35.0% | |
| GTGATAGTTGAACTTGAAGA+TGG | + | chr1_2:42555287-42555306 | None:intergenic | 35.0% | |
| GTCTCTCAAACAAGTTTAAG+AGG | - | chr1_2:42555385-42555404 | Msa0071100:CDS | 35.0% | |
| ! | TTCAAAGAAGTGTAACCTTG+AGG | - | chr1_2:42555711-42555730 | Msa0071100:CDS | 35.0% |
| ! | ATCAAAATTACAGCATTGGG+AGG | - | chr1_2:42555740-42555759 | Msa0071100:CDS | 35.0% |
| !!! | TTTCAGCGTGATTGTTGTTT+TGG | - | chr1_2:42555817-42555836 | Msa0071100:intron | 35.0% |
| TGGTCAAGTTTAATCGTTGA+CGG | + | chr1_2:42556197-42556216 | None:intergenic | 35.0% | |
| ATCTCGTCAAATTGCATGAT+CGG | + | chr1_2:42556262-42556281 | None:intergenic | 35.0% | |
| AGGACTCTATAAAGTTAGTG+TGG | - | chr1_2:42556316-42556335 | Msa0071100:intron | 35.0% | |
| ! | GAAGATGAGAAGCATGTTAT+TGG | - | chr1_2:42556584-42556603 | Msa0071100:intron | 35.0% |
| TGTTATTGGTGAAACAACCA+AGG | - | chr1_2:42556598-42556617 | Msa0071100:intron | 35.0% | |
| ! | TTATGGTACCTTGGAACTTT+TGG | + | chr1_2:42556741-42556760 | None:intergenic | 35.0% |
| ATACATTGCTTATGGTACCT+TGG | + | chr1_2:42556750-42556769 | None:intergenic | 35.0% | |
| TGACCTTGTCAATTCATGTT+AGG | - | chr1_2:42557074-42557093 | Msa0071100:CDS | 35.0% | |
| GTTCCTAACATGAATTGACA+AGG | + | chr1_2:42557080-42557099 | None:intergenic | 35.0% | |
| !! | CTATGAAGAAAAGCACTGAT+GGG | - | chr1_2:42557250-42557269 | Msa0071100:CDS | 35.0% |
| AAAGTTGACAAACTCAAAGG+AGG | - | chr1_2:42557332-42557351 | Msa0071100:CDS | 35.0% | |
| AAGGAGGCAAAAACAAACAA+TGG | - | chr1_2:42557348-42557367 | Msa0071100:CDS | 35.0% | |
| ATACTATCTACCAGTTTGGA+AGG | - | chr1_2:42557512-42557531 | Msa0071100:intron | 35.0% | |
| ! | AACGATACAGTTTGGAGTTT+AGG | + | chr1_2:42557594-42557613 | None:intergenic | 35.0% |
| !!! | CTGCATAACAATTTTGGTTG+CGG | + | chr1_2:42557629-42557648 | None:intergenic | 35.0% |
| AGCATATTTGACCTCAATAG+TGG | - | chr1_2:42557663-42557682 | Msa0071100:intron | 35.0% | |
| CACATTATGCCTCAATATCA+TGG | - | chr1_2:42557697-42557716 | Msa0071100:intron | 35.0% | |
| CTCATTAGGATATGAACTTG+TGG | - | chr1_2:42558050-42558069 | Msa0071100:intron | 35.0% | |
| TCCAATGCCAAGTTTCTATA+AGG | - | chr1_2:42558541-42558560 | Msa0071100:intron | 35.0% | |
| TCCTTATAGAAACTTGGCAT+TGG | + | chr1_2:42558545-42558564 | None:intergenic | 35.0% | |
| !! | TTTTTCAGCTCAACTTTTGG+AGG | + | chr1_2:42558572-42558591 | None:intergenic | 35.0% |
| TCCAAAAGTTGAGCTGAAAA+AGG | - | chr1_2:42558571-42558590 | Msa0071100:intron | 35.0% | |
| !!! | ACCTTTTTCAGCTCAACTTT+TGG | + | chr1_2:42558575-42558594 | None:intergenic | 35.0% |
| !! | TCTTCTGTTGTTTCTCATGT+GGG | + | chr1_2:42558774-42558793 | None:intergenic | 35.0% |
| !! | TTCTTCTGTTGTTTCTCATG+TGG | + | chr1_2:42558775-42558794 | None:intergenic | 35.0% |
| ACAGAAGAATGATTCAACCA+AGG | - | chr1_2:42558786-42558805 | Msa0071100:intron | 35.0% | |
| GATTTCCTTAGATTGTACCT+TGG | + | chr1_2:42558869-42558888 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTGCATCTTGGTCA+TGG | + | chr1_2:42558954-42558973 | None:intergenic | 35.0% |
| ATTCTTGTTCTATCCCATTC+TGG | + | chr1_2:42559029-42559048 | None:intergenic | 35.0% | |
| ACTTCATAGGATACAGTTTC+TGG | + | chr1_2:42559102-42559121 | None:intergenic | 35.0% | |
| GAGTTTAGATTGGTGTATCA+AGG | - | chr1_2:42559130-42559149 | Msa0071100:five_prime_UTR | 35.0% | |
| ! | GTGTTTTTCCTTCTGATTGA+AGG | - | chr1_2:42559344-42559363 | Msa0071100:five_prime_UTR | 35.0% |
| CAGTTACATATTTGAGGGAG+TGG | - | chr1_2:42555119-42555138 | Msa0071100:three_prime_UTR | 40.0% | |
| !! | AGTTTGTGAGAGTTTGTTGC+AGG | - | chr1_2:42555545-42555564 | Msa0071100:CDS | 40.0% |
| !! | GTTTGTGAGAGTTTGTTGCA+GGG | - | chr1_2:42555546-42555565 | Msa0071100:CDS | 40.0% |
| !! | TTTGTGAGAGTTTGTTGCAG+GGG | - | chr1_2:42555547-42555566 | Msa0071100:CDS | 40.0% |
| GGAGGATCAAATCTGCAAAA+TGG | + | chr1_2:42555857-42555876 | None:intergenic | 40.0% | |
| GGTCAAGTTTAATCGTTGAC+GGG | + | chr1_2:42556196-42556215 | None:intergenic | 40.0% | |
| AACTTGACCACATGCTTAAG+CGG | - | chr1_2:42556207-42556226 | Msa0071100:intron | 40.0% | |
| ! | ATGGTGCGACACTTGATAAT+CGG | + | chr1_2:42556233-42556252 | None:intergenic | 40.0% |
| ! | TATCAAGTGTCGCACCATAT+CGG | - | chr1_2:42556235-42556254 | Msa0071100:intron | 40.0% |
| TGTGACTATTTGCAGGACAA+TGG | - | chr1_2:42556538-42556557 | Msa0071100:intron | 40.0% | |
| GGTTGAGATGCTTCATTCTT+GGG | + | chr1_2:42556674-42556693 | None:intergenic | 40.0% | |
| GTCAATTCATGTTAGGAACC+TGG | - | chr1_2:42557081-42557100 | Msa0071100:CDS | 40.0% | |
| GAAGTTGTGCCCTTCAAATT+TGG | + | chr1_2:42557159-42557178 | None:intergenic | 40.0% | |
| GGAATGTAAGGCTCTTTGAA+AGG | + | chr1_2:42557206-42557225 | None:intergenic | 40.0% | |
| CTGATTTCGATGGGAATGTA+AGG | + | chr1_2:42557218-42557237 | None:intergenic | 40.0% | |
| !! | GCTATGAAGAAAAGCACTGA+TGG | - | chr1_2:42557249-42557268 | Msa0071100:CDS | 40.0% |
| AACAAATGCAGCCACTATTG+AGG | + | chr1_2:42557677-42557696 | None:intergenic | 40.0% | |
| ! | TGCCTCAATATCATGGATTG+TGG | - | chr1_2:42557704-42557723 | Msa0071100:intron | 40.0% |
| GGGTTTGAATTCTGATCAAC+AGG | + | chr1_2:42557946-42557965 | None:intergenic | 40.0% | |
| ACATCGTCATCTTCTCTGTT+CGG | + | chr1_2:42557985-42558004 | None:intergenic | 40.0% | |
| ! | CTCTGGATTTTCCTTCAGAT+TGG | - | chr1_2:42558178-42558197 | Msa0071100:intron | 40.0% |
| ! | GTTTTCATTGGCAGCTCTTT+AGG | - | chr1_2:42558425-42558444 | Msa0071100:intron | 40.0% |
| ATTTCTTGATCTCTGCCTCT+TGG | + | chr1_2:42558493-42558512 | None:intergenic | 40.0% | |
| GGAGGTTCCTTATAGAAACT+TGG | + | chr1_2:42558551-42558570 | None:intergenic | 40.0% | |
| ! | TTCCAAGCTTCGGTGATTTT+GGG | + | chr1_2:42558699-42558718 | None:intergenic | 40.0% |
| ! | CCTTTGTTTCTTCCAAGCTT+CGG | + | chr1_2:42558709-42558728 | None:intergenic | 40.0% |
| TTTCTCATGTGGGATAGAAC+TGG | + | chr1_2:42558764-42558783 | None:intergenic | 40.0% | |
| GAATGATTCAACCAAGGCAA+AGG | - | chr1_2:42558792-42558811 | Msa0071100:intron | 40.0% | |
| TCAACCAAGGCAAAGGTAAA+AGG | - | chr1_2:42558799-42558818 | Msa0071100:intron | 40.0% | |
| ! | ATAGCCTTTTACCTTTGCCT+TGG | + | chr1_2:42558806-42558825 | None:intergenic | 40.0% |
| TCAAGCCAAGGTACAATCTA+AGG | - | chr1_2:42558861-42558880 | Msa0071100:intron | 40.0% | |
| GGTACAATCTAAGGAAATCG+CGG | - | chr1_2:42558870-42558889 | Msa0071100:intron | 40.0% | |
| !! | TTTCTGGTGTGGAAGCATTA+AGG | + | chr1_2:42559086-42559105 | None:intergenic | 40.0% |
| !! | ATAGGATACAGTTTCTGGTG+TGG | + | chr1_2:42559097-42559116 | None:intergenic | 40.0% |
| TGTATCCTATGAAGTTGCTG+TGG | - | chr1_2:42559107-42559126 | Msa0071100:five_prime_UTR | 40.0% | |
| GTATCCTATGAAGTTGCTGT+GGG | - | chr1_2:42559108-42559127 | Msa0071100:five_prime_UTR | 40.0% | |
| TTGTGGAGAGAAAGCTCAAG+TGG | + | chr1_2:42555221-42555240 | None:intergenic | 45.0% | |
| ATTGCATGATCGGACCGATA+TGG | + | chr1_2:42556252-42556271 | None:intergenic | 45.0% | |
| GGGTTGAGATGCTTCATTCT+TGG | + | chr1_2:42556675-42556694 | None:intergenic | 45.0% | |
| TTGTACGGTGTGGCCTATTA+CGG | + | chr1_2:42556791-42556810 | None:intergenic | 45.0% | |
| ! | CAAGACGAGCTGATTTCGAT+GGG | + | chr1_2:42557227-42557246 | None:intergenic | 45.0% |
| ! | TCAAGACGAGCTGATTTCGA+TGG | + | chr1_2:42557228-42557247 | None:intergenic | 45.0% |
| ! | CTTTTGGCAACTGCATTCAC+TGG | + | chr1_2:42557544-42557563 | None:intergenic | 45.0% |
| ACATTGATGCCTCAGATGTC+TGG | + | chr1_2:42557567-42557586 | None:intergenic | 45.0% | |
| CGCCACAATCCATGATATTG+AGG | + | chr1_2:42557709-42557728 | None:intergenic | 45.0% | |
| CAGTCACGTGGAAAACCATA+AGG | + | chr1_2:42557919-42557938 | None:intergenic | 45.0% | |
| !! | TCGGCTTTTCACTTTTCGCA+GGG | + | chr1_2:42557966-42557985 | None:intergenic | 45.0% |
| !! | TTCGGCTTTTCACTTTTCGC+AGG | + | chr1_2:42557967-42557986 | None:intergenic | 45.0% |
| GCAATCAGAAGTCTTACTCC+TGG | - | chr1_2:42558140-42558159 | Msa0071100:intron | 45.0% | |
| ACTCCTGGTAAGAAGAGCAA+CGG | - | chr1_2:42558155-42558174 | Msa0071100:intron | 45.0% | |
| AGCTCGTTCTTCCAATCTGA+AGG | + | chr1_2:42558192-42558211 | None:intergenic | 45.0% | |
| !! | TTTTTGGCAGGAAAGCCAAG+AGG | - | chr1_2:42558475-42558494 | Msa0071100:intron | 45.0% |
| !! | TTCAGCTCAACTTTTGGAGG+AGG | + | chr1_2:42558569-42558588 | None:intergenic | 45.0% |
| ! | CTTCCAAGCTTCGGTGATTT+TGG | + | chr1_2:42558700-42558719 | None:intergenic | 45.0% |
| CCGAAGCTTGGAAGAAACAA+AGG | - | chr1_2:42558706-42558725 | Msa0071100:intron | 45.0% | |
| TGTCATGTCTTCCACAAACG+AGG | - | chr1_2:42558915-42558934 | Msa0071100:intron | 45.0% | |
| AATCACTGAGACCTCGTTTG+TGG | + | chr1_2:42558929-42558948 | None:intergenic | 45.0% | |
| TCTTGCTCAGAACAGTGTGT+TGG | - | chr1_2:42559059-42559078 | Msa0071100:intron | 45.0% | |
| AACTCCCACAGCAACTTCAT+AGG | + | chr1_2:42559115-42559134 | None:intergenic | 45.0% | |
| GTTGCTGTGGGAGTTTAGAT+TGG | - | chr1_2:42559120-42559139 | Msa0071100:five_prime_UTR | 45.0% | |
| ACAGTGTCCCTTCAATCAGA+AGG | + | chr1_2:42559355-42559374 | None:intergenic | 45.0% | |
| !!! | ATTTATAATACTTTTTTTTT+TGG | - | chr1_2:42556028-42556047 | Msa0071100:intron | 5.0% |
| !! | TATCATAAATAAAAATTAAA+AGG | - | chr1_2:42556296-42556315 | Msa0071100:CDS | 5.0% |
| !! | TTTATAATTTAGTAAATATT+GGG | + | chr1_2:42557761-42557780 | None:intergenic | 5.0% |
| !! | ATTTATAATTTAGTAAATAT+TGG | + | chr1_2:42557762-42557781 | None:intergenic | 5.0% |
| !! | GCTAGCAAAGCATTGAGGTG+AGG | + | chr1_2:42555062-42555081 | None:intergenic | 50.0% |
| TAATCGGCCGCTTAAGCATG+TGG | + | chr1_2:42556217-42556236 | None:intergenic | 50.0% | |
| ! | GCAACAACGCTTTTGACACC+AGG | + | chr1_2:42557102-42557121 | None:intergenic | 50.0% |
| TGCCAAAAGCCAGACATCTG+AGG | - | chr1_2:42557555-42557574 | Msa0071100:intron | 50.0% | |
| !!! | TGCCTCAGATGTCTGGCTTT+TGG | + | chr1_2:42557560-42557579 | None:intergenic | 50.0% |
| ACGAGCTGAAAAGCGAAGAG+AGG | - | chr1_2:42558205-42558224 | Msa0071100:intron | 50.0% | |
| ! | GGTGATTTTGGGCGTGTTGT+AGG | + | chr1_2:42558688-42558707 | None:intergenic | 50.0% |
| CGCGGTCACGAAAACAGAAA+TGG | - | chr1_2:42558888-42558907 | Msa0071100:intron | 50.0% | |
| TAGGCCACACCGTACAACCT+CGG | - | chr1_2:42556794-42556813 | Msa0071100:intron | 55.0% | |
| GGTCATCAGCCGAGGTTGTA+CGG | + | chr1_2:42556806-42556825 | None:intergenic | 55.0% | |
| CTGGCGTAGACCTTCCAAAC+TGG | + | chr1_2:42557525-42557544 | None:intergenic | 55.0% | |
| TCAACAGGTCTGCAGTCACG+TGG | + | chr1_2:42557931-42557950 | None:intergenic | 55.0% | |
| GAGCCGTTGCTCTTCTTACC+AGG | + | chr1_2:42558161-42558180 | None:intergenic | 55.0% | |
| GGTAAGAAGAGCAACGGCTC+TGG | - | chr1_2:42558161-42558180 | Msa0071100:intron | 55.0% | |
| CGCCCAAAATCACCGAAGCT+TGG | - | chr1_2:42558694-42558713 | Msa0071100:intron | 55.0% | |
| TCAGCCGAGGTTGTACGGTG+TGG | + | chr1_2:42556801-42556820 | None:intergenic | 60.0% | |
| GGGAGTTGGGATTGCTGTCG+TGG | + | chr1_2:42557741-42557760 | None:intergenic | 60.0% | |
| CGTGCATGGGTCATCAGCCG+AGG | + | chr1_2:42556814-42556833 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 42555043 | 42559426 | 42555043 | ID=Msa0071100;Name=Msa0071100 |
| chr1_2 | mRNA | 42555043 | 42559426 | 42555043 | ID=Msa0071100-mRNA-1;Parent=Msa0071100;Name=Msa0071100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=368|1|1|1|0.87|0.77|9|289|458 |
| chr1_2 | exon | 42555043 | 42555787 | 42555043 | ID=Msa0071100-mRNA-1:exon:12922;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42555877 | 42555984 | 42555877 | ID=Msa0071100-mRNA-1:exon:12921;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42556091 | 42556162 | 42556091 | ID=Msa0071100-mRNA-1:exon:12920;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42556243 | 42556321 | 42556243 | ID=Msa0071100-mRNA-1:exon:12919;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42556450 | 42556527 | 42556450 | ID=Msa0071100-mRNA-1:exon:12918;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42556885 | 42556943 | 42556885 | ID=Msa0071100-mRNA-1:exon:12917;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42557044 | 42557373 | 42557044 | ID=Msa0071100-mRNA-1:exon:12916;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42557718 | 42557916 | 42557718 | ID=Msa0071100-mRNA-1:exon:12915;Parent=Msa0071100-mRNA-1 |
| chr1_2 | exon | 42559063 | 42559426 | 42559063 | ID=Msa0071100-mRNA-1:exon:12914;Parent=Msa0071100-mRNA-1 |
| chr1_2 | five_prime_UTR | 42559063 | 42559426 | 42559063 | ID=Msa0071100-mRNA-1:five_prime_utr;Parent=Msa0071100-mRNA-1 |
| chr1_2 | five_prime_UTR | 42557913 | 42557916 | 42557913 | ID=Msa0071100-mRNA-1:five_prime_utr;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42557718 | 42557912 | 42557718 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42557044 | 42557373 | 42557044 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42556885 | 42556943 | 42556885 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42556450 | 42556527 | 42556450 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42556243 | 42556321 | 42556243 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42556091 | 42556162 | 42556091 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42555877 | 42555984 | 42555877 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | CDS | 42555332 | 42555787 | 42555332 | ID=Msa0071100-mRNA-1:cds;Parent=Msa0071100-mRNA-1 |
| chr1_2 | three_prime_UTR | 42555043 | 42555331 | 42555043 | ID=Msa0071100-mRNA-1:three_prime_utr;Parent=Msa0071100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
