AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025110 MtrunA17_Chr1g0179601 99.387 163 1 0 1 163 1 163 1.38e-115 324
Msa0025110 MtrunA17_Chr7g0265501 95.333 150 6 1 1 150 1 149 4.19e-90 259
Msa0025110 MtrunA17_Chr7g0265491 95.333 150 6 1 1 150 1 149 4.19e-90 259
Msa0025110 MtrunA17_Chr4g0027111 36.842 95 58 1 3 95 1 95 1.85e-18 77.4
Msa0025110 MtrunA17_Chr4g0058481 87.805 41 4 1 56 96 1 40 7.25e-17 70.1
Msa0025110 MtrunA17_Chr2g0321011 34.409 93 59 1 3 93 1 93 7.67e-15 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025110 AT2G36620.1 88.079 151 18 0 1 151 1 151 6.66e-86 249
Msa0025110 AT3G53020.1 86.755 151 18 1 1 151 1 149 1.96e-82 240
Msa0025110 AT2G44860.2 36.719 128 68 5 3 126 1 119 1.05e-17 75.9
Msa0025110 AT2G44860.1 36.719 128 68 5 3 126 1 119 1.05e-17 75.9

Find 55 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGTTGTTTCCAATTT+TGG 0.078361 1_1:+48113409 Msa0025110:three_prime_UTR
ATTCAAGTGCTAACCAAAAT+TGG 0.216853 1_1:-48113422 None:intergenic
GCTTGACAATCATTTGTCTT+TGG 0.297758 1_1:+48113618 Msa0025110:three_prime_UTR
CTTTGGTTATGCCACACATT+GGG 0.302539 1_1:+48113635 Msa0025110:three_prime_UTR
TGACTAAAGCCCCTGAATAT+TGG 0.315060 1_1:+48113668 Msa0025110:three_prime_UTR
CTTATGTTGCTTCCTGTACA+TGG 0.375497 1_1:-48112054 None:intergenic
GCCAAGATCTACCCTGGGAG+GGG 0.390686 1_1:+48111811 Msa0025110:CDS
ACACCGAAGAGCAGCTTCTC+TGG 0.409079 1_1:-48113077 None:intergenic
GCAGTCCATGTAAGCTTTGA+GGG 0.415662 1_1:-48112032 None:intergenic
GTCTATTGTTGGTGCTACTT+TGG 0.416689 1_1:+48113006 Msa0025110:CDS
CCTAAGCTTGGTGGTGGAGG+AGG 0.426298 1_1:+48113373 Msa0025110:CDS
GGCAGTCCATGTAAGCTTTG+AGG 0.432460 1_1:-48112033 None:intergenic
CTGGCAGCATCGCGAACCTC+TGG 0.434059 1_1:-48113058 None:intergenic
TACATTTCGAGTTGACAAAC+AGG 0.440559 1_1:-48111983 None:intergenic
CCTCCTCCACCACCAAGCTT+AGG 0.447642 1_1:-48113373 None:intergenic
ATTTATCCGTAGTGATTCTC+AGG 0.450559 1_1:+48111840 Msa0025110:CDS
ACCACTGAATCGGCACAATT+CGG 0.461843 1_1:-48111788 None:intergenic
CTGCCAGAGAAGCTGCTCTT+CGG 0.468051 1_1:+48113074 Msa0025110:CDS
GGATGAGAAGAAGGCGAAGA+AGG 0.476204 1_1:+48113282 Msa0025110:CDS
AGATCTTGGCACCACTGAAT+CGG 0.487454 1_1:-48111798 None:intergenic
GTTTCCAAGGGTGCATCAAA+AGG 0.492035 1_1:+48113349 Msa0025110:CDS
TTGTCAACTCGAAATGTAAG+AGG 0.493316 1_1:+48111988 Msa0025110:CDS
GAAAACAAAGGATGAGAAGA+AGG 0.495920 1_1:+48113273 Msa0025110:CDS
TCTTTGGTTATGCCACACAT+TGG 0.499971 1_1:+48113634 Msa0025110:three_prime_UTR
TGAAGCCCTCAAAGCTTACA+TGG 0.503244 1_1:+48112027 Msa0025110:CDS
GGTCCTAAGCTTGGTGGTGG+AGG 0.504766 1_1:+48113370 Msa0025110:CDS
CCAAGATCTACCCTGGGAGG+GGG 0.513418 1_1:+48111812 Msa0025110:CDS
GAAGGCAGAAAGTCAAGCCA+AGG 0.518118 1_1:+48113300 Msa0025110:CDS
CAAAATTGGAAACAACACTA+AGG 0.518936 1_1:-48113408 None:intergenic
TTGCAGTGAAATTAAGGAGA+GGG 0.527258 1_1:+48113246 Msa0025110:intron
TTACATGGACTGCCATGTAC+AGG 0.528646 1_1:+48112042 Msa0025110:CDS
CTTGAGAACCATGTTGCTGT+TGG 0.534814 1_1:-48111423 None:intergenic
CCGTACTCAAGGTCTATTGT+TGG 0.536255 1_1:+48112995 Msa0025110:CDS
CTAAGCTTGGTGGTGGAGGA+GGG 0.539336 1_1:+48113374 Msa0025110:CDS
TGGAAAAGGCAATGTTTCCA+AGG 0.545111 1_1:+48113336 Msa0025110:CDS
TTTGGTTATGCCACACATTG+GGG 0.552865 1_1:+48113636 Msa0025110:three_prime_UTR
AAAGGTCCTAAGCTTGGTGG+TGG 0.554861 1_1:+48113367 Msa0025110:CDS
AGTGGTGCCAAGATCTACCC+TGG 0.559906 1_1:+48111805 Msa0025110:CDS
TGCCAAGATCTACCCTGGGA+GGG 0.567188 1_1:+48111810 Msa0025110:CDS
GCATCAAAAGGTCCTAAGCT+TGG 0.570740 1_1:+48113361 Msa0025110:CDS
AGAAACTGCAAGTATTGAAG+AGG 0.572291 1_1:-48113581 None:intergenic
ACCGAATTGTGCCGATTCAG+TGG 0.583637 1_1:+48111787 Msa0025110:CDS
TCAAAAGGTCCTAAGCTTGG+TGG 0.588654 1_1:+48113364 Msa0025110:CDS
AAAATTGGAAACAACACTAA+GGG 0.588727 1_1:-48113407 None:intergenic
GGAAAAGGCAATGTTTCCAA+GGG 0.592710 1_1:+48113337 Msa0025110:CDS
ATGAACTAAAATTTGCTCAA+CGG 0.603514 1_1:-48113552 None:intergenic
ATCAAAATCCAACAGCAACA+TGG 0.608277 1_1:+48111415 Msa0025110:exon
GTACAGGAAGCAACATAAGA+AGG 0.610121 1_1:+48112058 Msa0025110:CDS
CCAACAATAGACCTTGAGTA+CGG 0.610399 1_1:-48112995 None:intergenic
GGAGAGGGTTAAGAAAACAA+AGG 0.615156 1_1:+48113261 Msa0025110:CDS
ATATTACCTGAGAATCACTA+CGG 0.625975 1_1:-48111846 None:intergenic
GTGGTGCCAAGATCTACCCT+GGG 0.639716 1_1:+48111806 Msa0025110:CDS
TTTGCAGTGAAATTAAGGAG+AGG 0.655385 1_1:+48113245 Msa0025110:intron
GAAACGATCAGAGAAGCCAG+AGG 0.669453 1_1:+48113042 Msa0025110:CDS
GTGCCAAGATCTACCCTGGG+AGG 0.687257 1_1:+48111809 Msa0025110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTTATTGAAAATGAAAA+TGG + chr1_1:48111576-48111595 Msa0025110:intron 15.0%
!! ACTATTACATATATAATACT+TGG + chr1_1:48112469-48112488 Msa0025110:intron 15.0%
!!! TCTTTTATTGAAAATGAAAA+TGG + chr1_1:48111576-48111595 Msa0025110:intron 15.0%
!! ACTATTACATATATAATACT+TGG + chr1_1:48112469-48112488 Msa0025110:intron 15.0%
!! CAAACCAAACTATATAAATT+CGG - chr1_1:48111548-48111567 None:intergenic 20.0%
!! CATTTAACAAATGTGTTAAT+GGG + chr1_1:48111742-48111761 Msa0025110:intron 20.0%
!!! GTATTTTATATTTGTGTGTT+AGG + chr1_1:48111764-48111783 Msa0025110:intron 20.0%
!! ATTCTCAGGTAATATTAAAT+TGG + chr1_1:48111854-48111873 Msa0025110:intron 20.0%
!! TACACCAAAAATTAACATAA+AGG - chr1_1:48112755-48112774 None:intergenic 20.0%
!! CAAACCAAACTATATAAATT+CGG - chr1_1:48111548-48111567 None:intergenic 20.0%
!! CATTTAACAAATGTGTTAAT+GGG + chr1_1:48111742-48111761 Msa0025110:intron 20.0%
!!! GTATTTTATATTTGTGTGTT+AGG + chr1_1:48111764-48111783 Msa0025110:intron 20.0%
!! ATTCTCAGGTAATATTAAAT+TGG + chr1_1:48111854-48111873 Msa0025110:intron 20.0%
!! TACACCAAAAATTAACATAA+AGG - chr1_1:48112755-48112774 None:intergenic 20.0%
! AATGCCGAATTTATATAGTT+TGG + chr1_1:48111541-48111560 Msa0025110:intron 25.0%
!! TATAGTCTGTTTGAGATTAT+TGG + chr1_1:48111609-48111628 Msa0025110:intron 25.0%
!! ACTTTTCTTATCGTAAGTAA+TGG + chr1_1:48111716-48111735 Msa0025110:intron 25.0%
! GCATTTAACAAATGTGTTAA+TGG + chr1_1:48111741-48111760 Msa0025110:intron 25.0%
!!! AGAGATTGAAGTTTGTTATT+GGG + chr1_1:48111878-48111897 Msa0025110:intron 25.0%
!!! TTTGTGTTTGTTGATTTTTC+AGG + chr1_1:48111956-48111975 Msa0025110:intron 25.0%
!!! TAAATACAACAGATTTGCTA+CGG - chr1_1:48112141-48112160 None:intergenic 25.0%
! TAGCAAATCTGTTGTATTTA+AGG + chr1_1:48112141-48112160 Msa0025110:intron 25.0%
! TTATGAGACAAACAACATAA+AGG - chr1_1:48112262-48112281 None:intergenic 25.0%
! CAAAAATAAGCCAATCTATT+CGG + chr1_1:48112337-48112356 Msa0025110:intron 25.0%
! AAAAATAAGCCAATCTATTC+GGG + chr1_1:48112338-48112357 Msa0025110:intron 25.0%
!!! AATTTTGGTTTACGTACTAA+GGG - chr1_1:48112364-48112383 None:intergenic 25.0%
!! AGTTTATTAGATGGCAATTT+TGG - chr1_1:48112379-48112398 None:intergenic 25.0%
! TTGTATAACCTGATTATCAA+AGG + chr1_1:48112588-48112607 Msa0025110:intron 25.0%
!! TAAAAGTTCCTTTGATAATC+AGG - chr1_1:48112599-48112618 None:intergenic 25.0%
!! TTATATTTCTGATTTACCTC+AGG + chr1_1:48112677-48112696 Msa0025110:intron 25.0%
!! CTTGCCTTTATGTTAATTTT+TGG + chr1_1:48112748-48112767 Msa0025110:intron 25.0%
!!! TTTGGTGTAATTTGAAGTTT+TGG + chr1_1:48112766-48112785 Msa0025110:intron 25.0%
! AAAAACATAATGACTTCAGA+TGG - chr1_1:48113226-48113245 None:intergenic 25.0%
!!! GTTTTTTTGCAGTGAAATTA+AGG + chr1_1:48113240-48113259 Msa0025110:intron 25.0%
! AAAATTGGAAACAACACTAA+GGG - chr1_1:48113410-48113429 None:intergenic 25.0%
!!! TTGCATCGATATTTTTTTGT+TGG + chr1_1:48113460-48113479 Msa0025110:three_prime_UTR 25.0%
! GAAAAATCTAAACAGTAACT+AGG - chr1_1:48113533-48113552 None:intergenic 25.0%
!! ATGAACTAAAATTTGCTCAA+CGG - chr1_1:48113555-48113574 None:intergenic 25.0%
! AATGCCGAATTTATATAGTT+TGG + chr1_1:48111541-48111560 Msa0025110:intron 25.0%
!! TATAGTCTGTTTGAGATTAT+TGG + chr1_1:48111609-48111628 Msa0025110:intron 25.0%
!! ACTTTTCTTATCGTAAGTAA+TGG + chr1_1:48111716-48111735 Msa0025110:intron 25.0%
! GCATTTAACAAATGTGTTAA+TGG + chr1_1:48111741-48111760 Msa0025110:intron 25.0%
!!! AGAGATTGAAGTTTGTTATT+GGG + chr1_1:48111878-48111897 Msa0025110:intron 25.0%
!!! TTTGTGTTTGTTGATTTTTC+AGG + chr1_1:48111956-48111975 Msa0025110:intron 25.0%
!!! TAAATACAACAGATTTGCTA+CGG - chr1_1:48112141-48112160 None:intergenic 25.0%
! TAGCAAATCTGTTGTATTTA+AGG + chr1_1:48112141-48112160 Msa0025110:intron 25.0%
! TTATGAGACAAACAACATAA+AGG - chr1_1:48112262-48112281 None:intergenic 25.0%
! CAAAAATAAGCCAATCTATT+CGG + chr1_1:48112337-48112356 Msa0025110:intron 25.0%
! AAAAATAAGCCAATCTATTC+GGG + chr1_1:48112338-48112357 Msa0025110:intron 25.0%
!!! AATTTTGGTTTACGTACTAA+GGG - chr1_1:48112364-48112383 None:intergenic 25.0%
!! AGTTTATTAGATGGCAATTT+TGG - chr1_1:48112379-48112398 None:intergenic 25.0%
! TTGTATAACCTGATTATCAA+AGG + chr1_1:48112588-48112607 Msa0025110:intron 25.0%
!! TAAAAGTTCCTTTGATAATC+AGG - chr1_1:48112599-48112618 None:intergenic 25.0%
!! TTATATTTCTGATTTACCTC+AGG + chr1_1:48112677-48112696 Msa0025110:intron 25.0%
!! CTTGCCTTTATGTTAATTTT+TGG + chr1_1:48112748-48112767 Msa0025110:intron 25.0%
!!! TTTGGTGTAATTTGAAGTTT+TGG + chr1_1:48112766-48112785 Msa0025110:intron 25.0%
! AAAAACATAATGACTTCAGA+TGG - chr1_1:48113226-48113245 None:intergenic 25.0%
!!! GTTTTTTTGCAGTGAAATTA+AGG + chr1_1:48113240-48113259 Msa0025110:intron 25.0%
! AAAATTGGAAACAACACTAA+GGG - chr1_1:48113410-48113429 None:intergenic 25.0%
!!! TTGCATCGATATTTTTTTGT+TGG + chr1_1:48113460-48113479 Msa0025110:three_prime_UTR 25.0%
! GAAAAATCTAAACAGTAACT+AGG - chr1_1:48113533-48113552 None:intergenic 25.0%
!! ATGAACTAAAATTTGCTCAA+CGG - chr1_1:48113555-48113574 None:intergenic 25.0%
! TCAAGTATGTTTTCTCTGAT+CGG + chr1_1:48111441-48111460 Msa0025110:intron 30.0%
ATATTACCTGAGAATCACTA+CGG - chr1_1:48111849-48111868 None:intergenic 30.0%
!! CAGAGATTGAAGTTTGTTAT+TGG + chr1_1:48111877-48111896 Msa0025110:intron 30.0%
TATTACTCATAGGTTTGTCA+AGG - chr1_1:48112289-48112308 None:intergenic 30.0%
AGCTTCTATGTATTACTCAT+AGG - chr1_1:48112299-48112318 None:intergenic 30.0%
!!! CAATTTTGGTTTACGTACTA+AGG - chr1_1:48112365-48112384 None:intergenic 30.0%
TCACAGTGAAGTTTATTAGA+TGG - chr1_1:48112388-48112407 None:intergenic 30.0%
ATCTAATAAACTTCACTGTG+AGG + chr1_1:48112387-48112406 Msa0025110:intron 30.0%
TCTAATAAACTTCACTGTGA+GGG + chr1_1:48112388-48112407 Msa0025110:intron 30.0%
CATTGTACAGTAATATCAGA+AGG - chr1_1:48112448-48112467 None:intergenic 30.0%
TAACATCAACAGTAACAGAA+AGG - chr1_1:48112861-48112880 None:intergenic 30.0%
! TTTCTCTCTTATTTCTTGCA+TGG + chr1_1:48113102-48113121 Msa0025110:intron 30.0%
TCTTAGTCTATATGTACTCT+TGG + chr1_1:48113161-48113180 Msa0025110:intron 30.0%
CAAAATTGGAAACAACACTA+AGG - chr1_1:48113411-48113430 None:intergenic 30.0%
!!! CTTAGTGTTGTTTCCAATTT+TGG + chr1_1:48113409-48113428 Msa0025110:three_prime_UTR 30.0%
ATTCAAGTGCTAACCAAAAT+TGG - chr1_1:48113425-48113444 None:intergenic 30.0%
! CTATCTTGTCAAACTTTTGT+TGG + chr1_1:48113500-48113519 Msa0025110:three_prime_UTR 30.0%
ATAAAAAAATCCCCAATGTG+TGG - chr1_1:48113649-48113668 None:intergenic 30.0%
! TCAAGTATGTTTTCTCTGAT+CGG + chr1_1:48111441-48111460 Msa0025110:intron 30.0%
ATATTACCTGAGAATCACTA+CGG - chr1_1:48111849-48111868 None:intergenic 30.0%
!! CAGAGATTGAAGTTTGTTAT+TGG + chr1_1:48111877-48111896 Msa0025110:intron 30.0%
TATTACTCATAGGTTTGTCA+AGG - chr1_1:48112289-48112308 None:intergenic 30.0%
AGCTTCTATGTATTACTCAT+AGG - chr1_1:48112299-48112318 None:intergenic 30.0%
!!! CAATTTTGGTTTACGTACTA+AGG - chr1_1:48112365-48112384 None:intergenic 30.0%
TCACAGTGAAGTTTATTAGA+TGG - chr1_1:48112388-48112407 None:intergenic 30.0%
ATCTAATAAACTTCACTGTG+AGG + chr1_1:48112387-48112406 Msa0025110:intron 30.0%
TCTAATAAACTTCACTGTGA+GGG + chr1_1:48112388-48112407 Msa0025110:intron 30.0%
CATTGTACAGTAATATCAGA+AGG - chr1_1:48112448-48112467 None:intergenic 30.0%
TAACATCAACAGTAACAGAA+AGG - chr1_1:48112861-48112880 None:intergenic 30.0%
! TTTCTCTCTTATTTCTTGCA+TGG + chr1_1:48113102-48113121 Msa0025110:intron 30.0%
TCTTAGTCTATATGTACTCT+TGG + chr1_1:48113161-48113180 Msa0025110:intron 30.0%
CAAAATTGGAAACAACACTA+AGG - chr1_1:48113411-48113430 None:intergenic 30.0%
!!! CTTAGTGTTGTTTCCAATTT+TGG + chr1_1:48113409-48113428 Msa0025110:three_prime_UTR 30.0%
ATTCAAGTGCTAACCAAAAT+TGG - chr1_1:48113425-48113444 None:intergenic 30.0%
! CTATCTTGTCAAACTTTTGT+TGG + chr1_1:48113500-48113519 Msa0025110:three_prime_UTR 30.0%
ATAAAAAAATCCCCAATGTG+TGG - chr1_1:48113649-48113668 None:intergenic 30.0%
ATCAAAATCCAACAGCAACA+TGG + chr1_1:48111415-48111434 Msa0025110:exon 35.0%
ATTTATCCGTAGTGATTCTC+AGG + chr1_1:48111840-48111859 Msa0025110:CDS 35.0%
!! TACATTTCGAGTTGACAAAC+AGG - chr1_1:48111986-48112005 None:intergenic 35.0%
TTGTCAACTCGAAATGTAAG+AGG + chr1_1:48111988-48112007 Msa0025110:CDS 35.0%
!! CAGATTTGCTACGGAATATA+TGG - chr1_1:48112132-48112151 None:intergenic 35.0%
CTAATAAACTTCACTGTGAG+GGG + chr1_1:48112389-48112408 Msa0025110:intron 35.0%
AGGATGAATTCACAGCTTAA+AGG - chr1_1:48112428-48112447 None:intergenic 35.0%
GATTTACCTCAGGATTATGA+CGG + chr1_1:48112687-48112706 Msa0025110:intron 35.0%
GTAACATGTTTAGATGTGTG+TGG - chr1_1:48112721-48112740 None:intergenic 35.0%
! TTGGTGTAATTTGAAGTCGT+AGG + chr1_1:48112785-48112804 Msa0025110:intron 35.0%
TTGAAGTCGTAGGATTATGA+CGG + chr1_1:48112795-48112814 Msa0025110:intron 35.0%
TACTTGCCTTTCTGTTATGA+TGG + chr1_1:48112887-48112906 Msa0025110:intron 35.0%
TTTGCAGTGAAATTAAGGAG+AGG + chr1_1:48113245-48113264 Msa0025110:intron 35.0%
TTGCAGTGAAATTAAGGAGA+GGG + chr1_1:48113246-48113265 Msa0025110:intron 35.0%
GAAAACAAAGGATGAGAAGA+AGG + chr1_1:48113273-48113292 Msa0025110:CDS 35.0%
!! AGAAACTGCAAGTATTGAAG+AGG - chr1_1:48113584-48113603 None:intergenic 35.0%
GCTTGACAATCATTTGTCTT+TGG + chr1_1:48113618-48113637 Msa0025110:three_prime_UTR 35.0%
ATCAAAATCCAACAGCAACA+TGG + chr1_1:48111415-48111434 Msa0025110:exon 35.0%
ATTTATCCGTAGTGATTCTC+AGG + chr1_1:48111840-48111859 Msa0025110:CDS 35.0%
!! TACATTTCGAGTTGACAAAC+AGG - chr1_1:48111986-48112005 None:intergenic 35.0%
TTGTCAACTCGAAATGTAAG+AGG + chr1_1:48111988-48112007 Msa0025110:CDS 35.0%
!! CAGATTTGCTACGGAATATA+TGG - chr1_1:48112132-48112151 None:intergenic 35.0%
CTAATAAACTTCACTGTGAG+GGG + chr1_1:48112389-48112408 Msa0025110:intron 35.0%
AGGATGAATTCACAGCTTAA+AGG - chr1_1:48112428-48112447 None:intergenic 35.0%
GATTTACCTCAGGATTATGA+CGG + chr1_1:48112687-48112706 Msa0025110:intron 35.0%
GTAACATGTTTAGATGTGTG+TGG - chr1_1:48112721-48112740 None:intergenic 35.0%
! TTGGTGTAATTTGAAGTCGT+AGG + chr1_1:48112785-48112804 Msa0025110:intron 35.0%
TTGAAGTCGTAGGATTATGA+CGG + chr1_1:48112795-48112814 Msa0025110:intron 35.0%
TACTTGCCTTTCTGTTATGA+TGG + chr1_1:48112887-48112906 Msa0025110:intron 35.0%
TTTGCAGTGAAATTAAGGAG+AGG + chr1_1:48113245-48113264 Msa0025110:intron 35.0%
TTGCAGTGAAATTAAGGAGA+GGG + chr1_1:48113246-48113265 Msa0025110:intron 35.0%
GAAAACAAAGGATGAGAAGA+AGG + chr1_1:48113273-48113292 Msa0025110:CDS 35.0%
!! AGAAACTGCAAGTATTGAAG+AGG - chr1_1:48113584-48113603 None:intergenic 35.0%
GCTTGACAATCATTTGTCTT+TGG + chr1_1:48113618-48113637 Msa0025110:three_prime_UTR 35.0%
ATCGTAAACAACACTGCAGA+AGG - chr1_1:48111503-48111522 None:intergenic 40.0%
GTGATTCGTTGCTTATGTGA+TGG + chr1_1:48111933-48111952 Msa0025110:intron 40.0%
! CTTATGTTGCTTCCTGTACA+TGG - chr1_1:48112057-48112076 None:intergenic 40.0%
GTACAGGAAGCAACATAAGA+AGG + chr1_1:48112058-48112077 Msa0025110:CDS 40.0%
TAACTTCCGTCATAATCCTG+AGG - chr1_1:48112696-48112715 None:intergenic 40.0%
ATGCAGCCATCATAACAGAA+AGG - chr1_1:48112896-48112915 None:intergenic 40.0%
!! CCTCTTTTTCACAGCTTCTT+GGG - chr1_1:48112957-48112976 None:intergenic 40.0%
CCAACAATAGACCTTGAGTA+CGG - chr1_1:48112998-48113017 None:intergenic 40.0%
!! GTCTATTGTTGGTGCTACTT+TGG + chr1_1:48113006-48113025 Msa0025110:CDS 40.0%
GGAGAGGGTTAAGAAAACAA+AGG + chr1_1:48113261-48113280 Msa0025110:CDS 40.0%
GCACAAAAATCTGCTGGAAA+AGG + chr1_1:48113322-48113341 Msa0025110:CDS 40.0%
TGGAAAAGGCAATGTTTCCA+AGG + chr1_1:48113336-48113355 Msa0025110:CDS 40.0%
GGAAAAGGCAATGTTTCCAA+GGG + chr1_1:48113337-48113356 Msa0025110:CDS 40.0%
TCTTTGGTTATGCCACACAT+TGG + chr1_1:48113634-48113653 Msa0025110:three_prime_UTR 40.0%
CTTTGGTTATGCCACACATT+GGG + chr1_1:48113635-48113654 Msa0025110:three_prime_UTR 40.0%
TTTGGTTATGCCACACATTG+GGG + chr1_1:48113636-48113655 Msa0025110:three_prime_UTR 40.0%
TGACTAAAGCCCCTGAATAT+TGG + chr1_1:48113668-48113687 Msa0025110:three_prime_UTR 40.0%
ATCGTAAACAACACTGCAGA+AGG - chr1_1:48111503-48111522 None:intergenic 40.0%
GTGATTCGTTGCTTATGTGA+TGG + chr1_1:48111933-48111952 Msa0025110:intron 40.0%
! CTTATGTTGCTTCCTGTACA+TGG - chr1_1:48112057-48112076 None:intergenic 40.0%
GTACAGGAAGCAACATAAGA+AGG + chr1_1:48112058-48112077 Msa0025110:CDS 40.0%
TAACTTCCGTCATAATCCTG+AGG - chr1_1:48112696-48112715 None:intergenic 40.0%
ATGCAGCCATCATAACAGAA+AGG - chr1_1:48112896-48112915 None:intergenic 40.0%
!! CCTCTTTTTCACAGCTTCTT+GGG - chr1_1:48112957-48112976 None:intergenic 40.0%
CCAACAATAGACCTTGAGTA+CGG - chr1_1:48112998-48113017 None:intergenic 40.0%
!! GTCTATTGTTGGTGCTACTT+TGG + chr1_1:48113006-48113025 Msa0025110:CDS 40.0%
GGAGAGGGTTAAGAAAACAA+AGG + chr1_1:48113261-48113280 Msa0025110:CDS 40.0%
GCACAAAAATCTGCTGGAAA+AGG + chr1_1:48113322-48113341 Msa0025110:CDS 40.0%
TGGAAAAGGCAATGTTTCCA+AGG + chr1_1:48113336-48113355 Msa0025110:CDS 40.0%
GGAAAAGGCAATGTTTCCAA+GGG + chr1_1:48113337-48113356 Msa0025110:CDS 40.0%
TCTTTGGTTATGCCACACAT+TGG + chr1_1:48113634-48113653 Msa0025110:three_prime_UTR 40.0%
CTTTGGTTATGCCACACATT+GGG + chr1_1:48113635-48113654 Msa0025110:three_prime_UTR 40.0%
TTTGGTTATGCCACACATTG+GGG + chr1_1:48113636-48113655 Msa0025110:three_prime_UTR 40.0%
TGACTAAAGCCCCTGAATAT+TGG + chr1_1:48113668-48113687 Msa0025110:three_prime_UTR 40.0%
!! GGTTTCTGGCACCAAAAACA+GGG + chr1_1:48111370-48111389 Msa0025110:five_prime_UTR 45.0%
CTTGAGAACCATGTTGCTGT+TGG - chr1_1:48111426-48111445 None:intergenic 45.0%
ACCACTGAATCGGCACAATT+CGG - chr1_1:48111791-48111810 None:intergenic 45.0%
AGATCTTGGCACCACTGAAT+CGG - chr1_1:48111801-48111820 None:intergenic 45.0%
TGAAGCCCTCAAAGCTTACA+TGG + chr1_1:48112027-48112046 Msa0025110:CDS 45.0%
! GCAGTCCATGTAAGCTTTGA+GGG - chr1_1:48112035-48112054 None:intergenic 45.0%
! TTACATGGACTGCCATGTAC+AGG + chr1_1:48112042-48112061 Msa0025110:CDS 45.0%
TACTAAGGGCCCGAATAGAT+TGG - chr1_1:48112350-48112369 None:intergenic 45.0%
CCCAAGAAGCTGTGAAAAAG+AGG + chr1_1:48112954-48112973 Msa0025110:CDS 45.0%
!! GCCTCTTTTTCACAGCTTCT+TGG - chr1_1:48112958-48112977 None:intergenic 45.0%
CTACCAAAAAGCCGTACTCA+AGG + chr1_1:48112984-48113003 Msa0025110:CDS 45.0%
! AGACCTTGAGTACGGCTTTT+TGG - chr1_1:48112990-48113009 None:intergenic 45.0%
CCGTACTCAAGGTCTATTGT+TGG + chr1_1:48112995-48113014 Msa0025110:CDS 45.0%
! TCCAGCAGATTTTTGTGCCT+TGG - chr1_1:48113320-48113339 None:intergenic 45.0%
! GTTTCCAAGGGTGCATCAAA+AGG + chr1_1:48113349-48113368 Msa0025110:CDS 45.0%
GCATCAAAAGGTCCTAAGCT+TGG + chr1_1:48113361-48113380 Msa0025110:CDS 45.0%
TCAAAAGGTCCTAAGCTTGG+TGG + chr1_1:48113364-48113383 Msa0025110:CDS 45.0%
!! GGTTTCTGGCACCAAAAACA+GGG + chr1_1:48111370-48111389 Msa0025110:five_prime_UTR 45.0%
CTTGAGAACCATGTTGCTGT+TGG - chr1_1:48111426-48111445 None:intergenic 45.0%
ACCACTGAATCGGCACAATT+CGG - chr1_1:48111791-48111810 None:intergenic 45.0%
AGATCTTGGCACCACTGAAT+CGG - chr1_1:48111801-48111820 None:intergenic 45.0%
TGAAGCCCTCAAAGCTTACA+TGG + chr1_1:48112027-48112046 Msa0025110:CDS 45.0%
! GCAGTCCATGTAAGCTTTGA+GGG - chr1_1:48112035-48112054 None:intergenic 45.0%
! TTACATGGACTGCCATGTAC+AGG + chr1_1:48112042-48112061 Msa0025110:CDS 45.0%
TACTAAGGGCCCGAATAGAT+TGG - chr1_1:48112350-48112369 None:intergenic 45.0%
CCCAAGAAGCTGTGAAAAAG+AGG + chr1_1:48112954-48112973 Msa0025110:CDS 45.0%
!! GCCTCTTTTTCACAGCTTCT+TGG - chr1_1:48112958-48112977 None:intergenic 45.0%
CTACCAAAAAGCCGTACTCA+AGG + chr1_1:48112984-48113003 Msa0025110:CDS 45.0%
! AGACCTTGAGTACGGCTTTT+TGG - chr1_1:48112990-48113009 None:intergenic 45.0%
CCGTACTCAAGGTCTATTGT+TGG + chr1_1:48112995-48113014 Msa0025110:CDS 45.0%
! TCCAGCAGATTTTTGTGCCT+TGG - chr1_1:48113320-48113339 None:intergenic 45.0%
! GTTTCCAAGGGTGCATCAAA+AGG + chr1_1:48113349-48113368 Msa0025110:CDS 45.0%
GCATCAAAAGGTCCTAAGCT+TGG + chr1_1:48113361-48113380 Msa0025110:CDS 45.0%
TCAAAAGGTCCTAAGCTTGG+TGG + chr1_1:48113364-48113383 Msa0025110:CDS 45.0%
!! GGGTTTCTGGCACCAAAAAC+AGG + chr1_1:48111369-48111388 Msa0025110:five_prime_UTR 50.0%
ACCAAAAACAGGGCAGGAAG+AGG + chr1_1:48111380-48111399 Msa0025110:five_prime_UTR 50.0%
! TCCTCTTCCTGCCCTGTTTT+TGG - chr1_1:48111384-48111403 None:intergenic 50.0%
AAAAACAGGGCAGGAAGAGG+AGG + chr1_1:48111383-48111402 Msa0025110:five_prime_UTR 50.0%
!! ACCGAATTGTGCCGATTCAG+TGG + chr1_1:48111787-48111806 Msa0025110:CDS 50.0%
TAAATCTGATCCCCCTCCCA+GGG - chr1_1:48111825-48111844 None:intergenic 50.0%
ATAAATCTGATCCCCCTCCC+AGG - chr1_1:48111826-48111845 None:intergenic 50.0%
GGCAGTCCATGTAAGCTTTG+AGG - chr1_1:48112036-48112055 None:intergenic 50.0%
TATGCGTACCTGTGAGTGAC+AGG + chr1_1:48112925-48112944 Msa0025110:intron 50.0%
GGCAATATCCTGTCACTCAC+AGG - chr1_1:48112936-48112955 None:intergenic 50.0%
GAAACGATCAGAGAAGCCAG+AGG + chr1_1:48113042-48113061 Msa0025110:CDS 50.0%
GGATGAGAAGAAGGCGAAGA+AGG + chr1_1:48113282-48113301 Msa0025110:CDS 50.0%
GAAGGCAGAAAGTCAAGCCA+AGG + chr1_1:48113300-48113319 Msa0025110:CDS 50.0%
GCCAAGGCACAAAAATCTGC+TGG + chr1_1:48113316-48113335 Msa0025110:CDS 50.0%
! AGGACCTTTTGATGCACCCT+TGG - chr1_1:48113356-48113375 None:intergenic 50.0%
! AAAGGTCCTAAGCTTGGTGG+TGG + chr1_1:48113367-48113386 Msa0025110:CDS 50.0%
AAGCCCCTGAATATTGGCGA+AGG + chr1_1:48113674-48113693 Msa0025110:three_prime_UTR 50.0%
AGCCCCTGAATATTGGCGAA+GGG + chr1_1:48113675-48113694 Msa0025110:three_prime_UTR 50.0%
!! GGGTTTCTGGCACCAAAAAC+AGG + chr1_1:48111369-48111388 Msa0025110:five_prime_UTR 50.0%
ACCAAAAACAGGGCAGGAAG+AGG + chr1_1:48111380-48111399 Msa0025110:five_prime_UTR 50.0%
! TCCTCTTCCTGCCCTGTTTT+TGG - chr1_1:48111384-48111403 None:intergenic 50.0%
AAAAACAGGGCAGGAAGAGG+AGG + chr1_1:48111383-48111402 Msa0025110:five_prime_UTR 50.0%
!! ACCGAATTGTGCCGATTCAG+TGG + chr1_1:48111787-48111806 Msa0025110:CDS 50.0%
TAAATCTGATCCCCCTCCCA+GGG - chr1_1:48111825-48111844 None:intergenic 50.0%
ATAAATCTGATCCCCCTCCC+AGG - chr1_1:48111826-48111845 None:intergenic 50.0%
GGCAGTCCATGTAAGCTTTG+AGG - chr1_1:48112036-48112055 None:intergenic 50.0%
TATGCGTACCTGTGAGTGAC+AGG + chr1_1:48112925-48112944 Msa0025110:intron 50.0%
GGCAATATCCTGTCACTCAC+AGG - chr1_1:48112936-48112955 None:intergenic 50.0%
GAAACGATCAGAGAAGCCAG+AGG + chr1_1:48113042-48113061 Msa0025110:CDS 50.0%
GGATGAGAAGAAGGCGAAGA+AGG + chr1_1:48113282-48113301 Msa0025110:CDS 50.0%
GAAGGCAGAAAGTCAAGCCA+AGG + chr1_1:48113300-48113319 Msa0025110:CDS 50.0%
GCCAAGGCACAAAAATCTGC+TGG + chr1_1:48113316-48113335 Msa0025110:CDS 50.0%
! AGGACCTTTTGATGCACCCT+TGG - chr1_1:48113356-48113375 None:intergenic 50.0%
! AAAGGTCCTAAGCTTGGTGG+TGG + chr1_1:48113367-48113386 Msa0025110:CDS 50.0%
TCTGGCACCAAAAACAGGGC+AGG + chr1_1:48111374-48111393 Msa0025110:five_prime_UTR 55.0%
! AGTGGTGCCAAGATCTACCC+TGG + chr1_1:48111805-48111824 Msa0025110:CDS 55.0%
! GTGGTGCCAAGATCTACCCT+GGG + chr1_1:48111806-48111825 Msa0025110:CDS 55.0%
TGCCAAGATCTACCCTGGGA+GGG + chr1_1:48111810-48111829 Msa0025110:CDS 55.0%
CTGCCAGAGAAGCTGCTCTT+CGG + chr1_1:48113074-48113093 Msa0025110:CDS 55.0%
ACACCGAAGAGCAGCTTCTC+TGG - chr1_1:48113080-48113099 None:intergenic 55.0%
!! CTAAGCTTGGTGGTGGAGGA+GGG + chr1_1:48113374-48113393 Msa0025110:CDS 55.0%
TCTGGCACCAAAAACAGGGC+AGG + chr1_1:48111374-48111393 Msa0025110:five_prime_UTR 55.0%
! AGTGGTGCCAAGATCTACCC+TGG + chr1_1:48111805-48111824 Msa0025110:CDS 55.0%
! GTGGTGCCAAGATCTACCCT+GGG + chr1_1:48111806-48111825 Msa0025110:CDS 55.0%
TGCCAAGATCTACCCTGGGA+GGG + chr1_1:48111810-48111829 Msa0025110:CDS 55.0%
CTGCCAGAGAAGCTGCTCTT+CGG + chr1_1:48113074-48113093 Msa0025110:CDS 55.0%
ACACCGAAGAGCAGCTTCTC+TGG - chr1_1:48113080-48113099 None:intergenic 55.0%
!! CTAAGCTTGGTGGTGGAGGA+GGG + chr1_1:48113374-48113393 Msa0025110:CDS 55.0%
GTGCCAAGATCTACCCTGGG+AGG + chr1_1:48111809-48111828 Msa0025110:CDS 60.0%
GCCAAGATCTACCCTGGGAG+GGG + chr1_1:48111811-48111830 Msa0025110:CDS 60.0%
CCAAGATCTACCCTGGGAGG+GGG + chr1_1:48111812-48111831 Msa0025110:CDS 60.0%
!! GGTCCTAAGCTTGGTGGTGG+AGG + chr1_1:48113370-48113389 Msa0025110:CDS 60.0%
CCTCCTCCACCACCAAGCTT+AGG - chr1_1:48113376-48113395 None:intergenic 60.0%
!! CCTAAGCTTGGTGGTGGAGG+AGG + chr1_1:48113373-48113392 Msa0025110:CDS 60.0%
GTGCCAAGATCTACCCTGGG+AGG + chr1_1:48111809-48111828 Msa0025110:CDS 60.0%
GCCAAGATCTACCCTGGGAG+GGG + chr1_1:48111811-48111830 Msa0025110:CDS 60.0%
CCAAGATCTACCCTGGGAGG+GGG + chr1_1:48111812-48111831 Msa0025110:CDS 60.0%
!! GGTCCTAAGCTTGGTGGTGG+AGG + chr1_1:48113370-48113389 Msa0025110:CDS 60.0%
CCTCCTCCACCACCAAGCTT+AGG - chr1_1:48113376-48113395 None:intergenic 60.0%
!! CCTAAGCTTGGTGGTGGAGG+AGG + chr1_1:48113373-48113392 Msa0025110:CDS 60.0%
CCCCCTCCCAGGGTAGATCT+TGG - chr1_1:48111815-48111834 None:intergenic 65.0%
CTGGCAGCATCGCGAACCTC+TGG - chr1_1:48113061-48113080 None:intergenic 65.0%
CCCCCTCCCAGGGTAGATCT+TGG - chr1_1:48111815-48111834 None:intergenic 65.0%
CTGGCAGCATCGCGAACCTC+TGG - chr1_1:48113061-48113080 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 48111368 48113694 48111368 ID=Msa0025110;Name=Msa0025110
chr1_1 mRNA 48111368 48113694 48111368 ID=Msa0025110-mRNA-1;Parent=Msa0025110;Name=Msa0025110-mRNA-1;_AED=0.19;_eAED=0.19;_QI=66|1|1|1|1|1|5|289|163
chr1_1 exon 48111368 48111444 48111368 ID=Msa0025110-mRNA-1:exon:13780;Parent=Msa0025110-mRNA-1
chr1_1 exon 48111786 48111861 48111786 ID=Msa0025110-mRNA-1:exon:13781;Parent=Msa0025110-mRNA-1
chr1_1 exon 48111978 48112079 48111978 ID=Msa0025110-mRNA-1:exon:13782;Parent=Msa0025110-mRNA-1
chr1_1 exon 48112947 48113095 48112947 ID=Msa0025110-mRNA-1:exon:13783;Parent=Msa0025110-mRNA-1
chr1_1 exon 48113252 48113694 48113252 ID=Msa0025110-mRNA-1:exon:13784;Parent=Msa0025110-mRNA-1
chr1_1 five_prime_UTR 48111368 48111433 48111368 ID=Msa0025110-mRNA-1:five_prime_utr;Parent=Msa0025110-mRNA-1
chr1_1 CDS 48111434 48111444 48111434 ID=Msa0025110-mRNA-1:cds;Parent=Msa0025110-mRNA-1
chr1_1 CDS 48111786 48111861 48111786 ID=Msa0025110-mRNA-1:cds;Parent=Msa0025110-mRNA-1
chr1_1 CDS 48111978 48112079 48111978 ID=Msa0025110-mRNA-1:cds;Parent=Msa0025110-mRNA-1
chr1_1 CDS 48112947 48113095 48112947 ID=Msa0025110-mRNA-1:cds;Parent=Msa0025110-mRNA-1
chr1_1 CDS 48113252 48113405 48113252 ID=Msa0025110-mRNA-1:cds;Parent=Msa0025110-mRNA-1
chr1_1 three_prime_UTR 48113406 48113694 48113406 ID=Msa0025110-mRNA-1:three_prime_utr;Parent=Msa0025110-mRNA-1
Gene Sequence

>Msa0025110

ATGGTTCTCAAGACCGAATTGTGCCGATTCAGTGGTGCCAAGATCTACCCTGGGAGGGGGATCAGATTTATCCGTAGTGATTCTCAGGTTTTCCTGTTTGTCAACTCGAAATGTAAGAGGTATTTTCACAACAAGTTGAAGCCCTCAAAGCTTACATGGACTGCCATGTACAGGAAGCAACATAAGAAGGATATTGCCCAAGAAGCTGTGAAAAAGAGGCGTAGAGCTACCAAAAAGCCGTACTCAAGGTCTATTGTTGGTGCTACTTTGGAAGTTATTCAGAAGAAACGATCAGAGAAGCCAGAGGTTCGCGATGCTGCCAGAGAAGCTGCTCTTCGTGAAATTAAGGAGAGGGTTAAGAAAACAAAGGATGAGAAGAAGGCGAAGAAGGCAGAAAGTCAAGCCAAGGCACAAAAATCTGCTGGAAAAGGCAATGTTTCCAAGGGTGCATCAAAAGGTCCTAAGCTTGGTGGTGGAGGAGGGAAACGTTGA
Protein sequence

>Msa0025110

MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVKKTKDEKKAKKAESQAKAQKSAGKGNVSKGASKGPKLGGGGGKR*