Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094380 | XP_013447916.1 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094380 | sp|P0DKK7|RL7A2_ORYSJ | 88.846 | 260 | 27 | 1 | 1 | 260 | 1 | 258 | 3.92e-170 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094380 | A0A072TYM4 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa1094380 | 0.805212 | 1.488370e-49 | -8.615850e-47 |
| Msa0002790 | Msa1094380 | 0.818694 | 1.715209e-52 | -8.615850e-47 |
| Msa0025110 | Msa1094380 | 0.807712 | 4.421300e-50 | -8.615850e-47 |
| Msa0032810 | Msa1094380 | 0.859515 | 3.921124e-63 | -8.615850e-47 |
| Msa0038090 | Msa1094380 | 0.817463 | 3.254893e-52 | -8.615850e-47 |
| Msa0045730 | Msa1094380 | 0.820579 | 6.366397e-53 | -8.615850e-47 |
| Msa0069080 | Msa1094380 | 0.814385 | 1.582744e-51 | -8.615850e-47 |
| Msa0090580 | Msa1094380 | 0.826735 | 2.304175e-54 | -8.615850e-47 |
| Msa0116130 | Msa1094380 | 0.828908 | 6.921317e-55 | -8.615850e-47 |
| Msa0116670 | Msa1094380 | 0.800709 | 1.269303e-48 | -8.615850e-47 |
| Msa0622750 | Msa1094380 | 0.808537 | 2.949486e-50 | -8.615850e-47 |
| Msa0623200 | Msa1094380 | 0.825749 | 3.955572e-54 | -8.615850e-47 |
| Msa0656410 | Msa1094380 | 0.803267 | 3.782605e-49 | -8.615850e-47 |
| Msa0683660 | Msa1094380 | 0.846157 | 2.590505e-59 | -8.615850e-47 |
| Msa0705800 | Msa1094380 | 0.811636 | 6.341748e-51 | -8.615850e-47 |
| Msa0712610 | Msa1094380 | 0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0717380 | Msa1094380 | 0.801360 | 9.342633e-49 | -8.615850e-47 |
| Msa0729200 | Msa1094380 | 0.849238 | 3.676196e-60 | -8.615850e-47 |
| Msa0752910 | Msa1094380 | 0.825653 | 4.167836e-54 | -8.615850e-47 |
| Msa0769590 | Msa1094380 | 0.845773 | 3.294256e-59 | -8.615850e-47 |
| Msa0781080 | Msa1094380 | 0.840005 | 1.128181e-57 | -8.615850e-47 |
| Msa0783630 | Msa1094380 | 0.841319 | 5.108680e-58 | -8.615850e-47 |
| Msa0785130 | Msa1094380 | 0.810267 | 1.255125e-50 | -8.615850e-47 |
| Msa0806880 | Msa1094380 | 0.832914 | 7.201178e-56 | -8.615850e-47 |
| Msa0827380 | Msa1094380 | 0.803272 | 3.773986e-49 | -8.615850e-47 |
| Msa0129660 | Msa1094380 | 0.819024 | 1.443077e-52 | -8.615850e-47 |
| Msa0133540 | Msa1094380 | 0.815616 | 8.440593e-52 | -8.615850e-47 |
| Msa0138890 | Msa1094380 | 0.819385 | 1.194125e-52 | -8.615850e-47 |
| Msa0172930 | Msa1094380 | 0.813929 | 1.995547e-51 | -8.615850e-47 |
| Msa0181490 | Msa1094380 | 0.818595 | 1.805538e-52 | -8.615850e-47 |
| Msa0210360 | Msa1094380 | 0.830640 | 2.621438e-55 | -8.615850e-47 |
| Msa0218830 | Msa1094380 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0219120 | Msa1094380 | 0.840300 | 9.450549e-58 | -8.615850e-47 |
| Msa0221030 | Msa1094380 | 0.805410 | 1.352963e-49 | -8.615850e-47 |
| Msa0229150 | Msa1094380 | 0.816187 | 6.292154e-52 | -8.615850e-47 |
| Msa0230490 | Msa1094380 | 0.823239 | 1.541612e-53 | -8.615850e-47 |
| Msa0463520 | Msa1094380 | 0.820600 | 6.294726e-53 | -8.615850e-47 |
| Msa0481850 | Msa1094380 | 0.834014 | 3.829277e-56 | -8.615850e-47 |
| Msa1012740 | Msa1094380 | 0.859165 | 4.994679e-63 | -8.615850e-47 |
| Msa1012770 | Msa1094380 | 0.810464 | 1.137665e-50 | -8.615850e-47 |
| Msa1039520 | Msa1094380 | 0.802095 | 6.599765e-49 | -8.615850e-47 |
| Msa1040160 | Msa1094380 | 0.818383 | 2.017689e-52 | -8.615850e-47 |
| Msa1058660 | Msa1094380 | 0.805818 | 1.110829e-49 | -8.615850e-47 |
| Msa1072710 | Msa1094380 | 0.820763 | 5.776236e-53 | -8.615850e-47 |
| Msa1078870 | Msa1094380 | 0.830101 | 3.550571e-55 | -8.615850e-47 |
| Msa1078980 | Msa1094380 | 0.830095 | 3.560634e-55 | -8.615850e-47 |
| Msa1080350 | Msa1094380 | 0.842259 | 2.883721e-58 | -8.615850e-47 |
| Msa1089220 | Msa1094380 | 0.807719 | 4.406527e-50 | -8.615850e-47 |
| Msa1094380 | Msa1125860 | 0.837462 | 5.124640e-57 | -8.615850e-47 |
| Msa1094380 | Msa1126060 | 0.845738 | 3.367672e-59 | -8.615850e-47 |
| Msa1094380 | Msa1169180 | 0.811537 | 6.661377e-51 | -8.615850e-47 |
| Msa1094380 | Msa1195300 | 0.826724 | 2.318577e-54 | -8.615850e-47 |
| Msa1094380 | Msa1215820 | 0.809920 | 1.490706e-50 | -8.615850e-47 |
| Msa1094380 | Msa1218170 | 0.800039 | 1.737836e-48 | -8.615850e-47 |
| Msa1094380 | Msa1311400 | 0.802725 | 4.895446e-49 | -8.615850e-47 |
| Msa1094380 | Msa1332250 | 0.837951 | 3.839139e-57 | -8.615850e-47 |
| Msa1094380 | Msa1338190 | 0.817288 | 3.564093e-52 | -8.615850e-47 |
| Msa1094380 | Msa1356790 | 0.807683 | 4.483199e-50 | -8.615850e-47 |
| Msa1094380 | Msa1362790 | 0.877310 | 6.962909e-69 | -8.615850e-47 |
| Msa1094380 | Msa1369190 | 0.820074 | 8.311604e-53 | -8.615850e-47 |
| Msa1094380 | Msa1374240 | 0.815007 | 1.152416e-51 | -8.615850e-47 |
| Msa1094380 | Msa1406080 | 0.820417 | 6.937180e-53 | -8.615850e-47 |
| Msa1094380 | Msa1413500 | 0.823501 | 1.338930e-53 | -8.615850e-47 |
| Msa1094380 | Msa1418770 | 0.838325 | 3.075672e-57 | -8.615850e-47 |
| Msa1094380 | Msa1426120 | 0.844063 | 9.533919e-59 | -8.615850e-47 |
| Msa1094380 | Msa1426490 | 0.854029 | 1.615576e-61 | -8.615850e-47 |
| Msa1094380 | Msa1427560 | 0.810202 | 1.295800e-50 | -8.615850e-47 |
| Msa0258850 | Msa1094380 | 0.831117 | 2.002059e-55 | -8.615850e-47 |
| Msa0289580 | Msa1094380 | 0.818437 | 1.961481e-52 | -8.615850e-47 |
| Msa0289610 | Msa1094380 | 0.818100 | 2.337257e-52 | -8.615850e-47 |
| Msa0297830 | Msa1094380 | 0.824463 | 7.962142e-54 | -8.615850e-47 |
| Msa0298200 | Msa1094380 | 0.830437 | 2.938715e-55 | -8.615850e-47 |
| Msa0306690 | Msa1094380 | 0.824124 | 9.564545e-54 | -8.615850e-47 |
| Msa0327300 | Msa1094380 | 0.812087 | 5.058641e-51 | -8.615850e-47 |
| Msa0335840 | Msa1094380 | 0.829874 | 4.032480e-55 | -8.615850e-47 |
| Msa0337670 | Msa1094380 | 0.807657 | 4.541567e-50 | -8.615850e-47 |
| Msa0348830 | Msa1094380 | 0.850394 | 1.746866e-60 | -8.615850e-47 |
| Msa0483110 | Msa1094380 | 0.808356 | 3.224363e-50 | -8.615850e-47 |
| Msa0520660 | Msa1094380 | 0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0531650 | Msa1094380 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0534750 | Msa1094380 | 0.816563 | 5.185845e-52 | -8.615850e-47 |
| Msa0584030 | Msa1094380 | 0.836279 | 1.026838e-56 | -8.615850e-47 |
| Msa0590940 | Msa1094380 | 0.805192 | 1.502899e-49 | -8.615850e-47 |
| Msa0876170 | Msa1094380 | 0.845791 | 3.258144e-59 | -8.615850e-47 |
| Msa0888810 | Msa1094380 | 0.837218 | 5.918644e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094380 | MtrunA17_Chr7g0224411 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 523 |
| Msa1094380 | MtrunA17_Chr4g0037721 | 92.692 | 260 | 18 | 1 | 1 | 260 | 1 | 259 | 4.62e-178 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094380 | AT3G62870.1 | 82.308 | 260 | 42 | 1 | 1 | 260 | 1 | 256 | 2.34e-160 | 445 |
| Msa1094380 | AT2G47610.1 | 86.008 | 243 | 34 | 0 | 18 | 260 | 15 | 257 | 5.17e-159 | 442 |
Find 84 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAATGAGTCTTTCTT+TGG | 0.198830 | 7_3:+15991406 | None:intergenic |
| GAAGTGGGGTGGTGGTATTA+TGG | 0.264609 | 7_3:-15991456 | Msa1094380:CDS |
| GAGAAGAGGCCAAAGCAATT+TGG | 0.270772 | 7_3:-15993576 | Msa1094380:CDS |
| AGTCCATATTTCACATTAAT+AGG | 0.274436 | 7_3:+15992050 | None:intergenic |
| GTTTGTGAGGTGAACTTAAA+AGG | 0.276354 | 7_3:+15993841 | None:intergenic |
| AAGCCTATTAATGTGAAATA+TGG | 0.287894 | 7_3:-15992053 | Msa1094380:CDS |
| AACCTTGTCAAATCTCTCTT+TGG | 0.311553 | 7_3:+15993534 | None:intergenic |
| CTCTGAATCTGAACCGTCTT+AGG | 0.320689 | 7_3:+15993501 | None:intergenic |
| CGTCAAGAATGAAGACAAAA+TGG | 0.320782 | 7_3:-15991646 | Msa1094380:CDS |
| AGAAGAGGCCAAAGCAATTT+GGG | 0.324521 | 7_3:-15993575 | Msa1094380:CDS |
| AAGTGGGGTGGTGGTATTAT+GGG | 0.327204 | 7_3:-15991455 | Msa1094380:CDS |
| TGTCAAGGGCAAAGCACGTT+TGG | 0.330406 | 7_3:-15991798 | Msa1094380:CDS |
| AGCCAGACAACGAGCTCAAT+TGG | 0.346442 | 7_3:+15991860 | None:intergenic |
| CATTCTTTGAGCAGCTTCCT+TGG | 0.361728 | 7_3:+15991388 | None:intergenic |
| CCAAAGCAAATGGAATTTCT+AGG | 0.364165 | 7_3:+15991364 | None:intergenic |
| TTCTTCTTCGCTGCTGCAAC+TGG | 0.368855 | 7_3:+15993630 | None:intergenic |
| CCTAGAAATTCCATTTGCTT+TGG | 0.376226 | 7_3:-15991364 | Msa1094380:exon |
| TCTGGTTTGAATTACCTTGA+TGG | 0.376236 | 7_3:+15991602 | None:intergenic |
| AGCTTGTAATTCACAATCAA+TGG | 0.379531 | 7_3:-15991251 | Msa1094380:three_prime_UTR |
| TATCGAGTGTCTTAGTGAAC+TGG | 0.404157 | 7_3:+15993430 | None:intergenic |
| GTCAAGGGCAAAGCACGTTT+GGG | 0.408522 | 7_3:-15991797 | Msa1094380:CDS |
| ACGACAAATTTGAGGAAAAC+AGG | 0.415015 | 7_3:-15991481 | Msa1094380:CDS |
| ACCCAATTGAGCTCGTTGTC+TGG | 0.417238 | 7_3:-15991862 | Msa1094380:CDS |
| TCCAGCTTTGTGCAGAAAGA+TGG | 0.419185 | 7_3:-15991837 | Msa1094380:CDS |
| TTTGCCCTCAGATTCGGCTT+GGG | 0.426690 | 7_3:+15992091 | None:intergenic |
| ATTTGACAAGGTTTGTGAAA+TGG | 0.429794 | 7_3:-15993524 | Msa1094380:CDS |
| TTTGTGAGGTGAACTTAAAA+GGG | 0.434212 | 7_3:+15993842 | None:intergenic |
| CCACCGATCCCAAATTGCTT+TGG | 0.444497 | 7_3:+15993567 | None:intergenic |
| AGAAGGAACGTCTCTTGAAA+AGG | 0.447060 | 7_3:-15992115 | Msa1094380:CDS |
| CAGTACCTGCTCAATAAGAT+AGG | 0.450777 | 7_3:+15992016 | None:intergenic |
| TCCATCTTTCTGCACAAAGC+TGG | 0.451418 | 7_3:+15991836 | None:intergenic |
| TAACTTTAACGACAAATTTG+AGG | 0.461068 | 7_3:-15991489 | Msa1094380:CDS |
| TGTCCTCAGGCCTGTACTTG+AGG | 0.467651 | 7_3:+15992147 | None:intergenic |
| AACAGGAAGAAGTGGGGTGG+TGG | 0.477152 | 7_3:-15991464 | Msa1094380:CDS |
| GAACCTTCAACCTCTGCTTA+AGG | 0.478965 | 7_3:+15993466 | None:intergenic |
| GAATTACCTTGATGGCCTCT+AGG | 0.480564 | 7_3:+15991610 | None:intergenic |
| ACTTGAGGAGCATCTTGAAA+AGG | 0.488088 | 7_3:+15992162 | None:intergenic |
| CTTGTCAAATCTCTCTTTGG+TGG | 0.494306 | 7_3:+15993537 | None:intergenic |
| GCCAGACAACGAGCTCAATT+GGG | 0.496078 | 7_3:+15991861 | None:intergenic |
| TATACTAAGACAGCAAATGA+AGG | 0.505062 | 7_3:+15991081 | None:intergenic |
| TCAAGATGCTCCTCAAGTAC+AGG | 0.506258 | 7_3:-15992157 | Msa1094380:CDS |
| GATCCTTAAGCAGAGGTTGA+AGG | 0.507984 | 7_3:-15993469 | Msa1094380:CDS |
| TGAGGAAAACAGGAAGAAGT+GGG | 0.515672 | 7_3:-15991471 | Msa1094380:CDS |
| GAAGGAACGTCTCTTGAAAA+GGG | 0.519164 | 7_3:-15992114 | Msa1094380:CDS |
| CAGAATCCTAGAGGCCATCA+AGG | 0.522029 | 7_3:-15991616 | Msa1094380:intron |
| TTAAAAGGGTTATGAAAATG+TGG | 0.528357 | 7_3:+15993856 | None:intergenic |
| TGAGGACAAAGCAGAAAAGA+AGG | 0.533067 | 7_3:-15992132 | Msa1094380:CDS |
| TTCAGATTCAGAGGAAGAAG+AGG | 0.541607 | 7_3:-15993491 | Msa1094380:CDS |
| TGTTACCTATCTTATTGAGC+AGG | 0.541671 | 7_3:-15992021 | Msa1094380:intron |
| TTACAAGCTAACAGAATGAA+AGG | 0.542137 | 7_3:+15991265 | None:intergenic |
| GACGGTTGTCAAGCACAAAA+CGG | 0.544344 | 7_3:+15991665 | None:intergenic |
| CACCAAAGAGAGATTTGACA+AGG | 0.544974 | 7_3:-15993536 | Msa1094380:CDS |
| GAAGAATACAGCACTGAAAG+TGG | 0.550599 | 7_3:-15993613 | Msa1094380:CDS |
| TTGAGGAAAACAGGAAGAAG+TGG | 0.552443 | 7_3:-15991472 | Msa1094380:CDS |
| TTTGCCCTTGACAATGCAGT+AGG | 0.558136 | 7_3:+15991808 | None:intergenic |
| AATTCCCTACTGCATTGTCA+AGG | 0.570742 | 7_3:-15991813 | Msa1094380:CDS |
| AAGGGCCCAAGCCGAATCTG+AGG | 0.570757 | 7_3:-15992096 | Msa1094380:CDS |
| TAAAAGGGTTATGAAAATGT+GGG | 0.571586 | 7_3:+15993857 | None:intergenic |
| TTAGTGAACTGGTTAAGAGC+AGG | 0.576262 | 7_3:+15993441 | None:intergenic |
| AAATAAATCAGCAAAAGTGC+AGG | 0.578724 | 7_3:+15991220 | None:intergenic |
| TTAATGTTGTTTGATGAAAG+AGG | 0.579783 | 7_3:+15993777 | None:intergenic |
| TTCACCTCACAAACACCACT+AGG | 0.581666 | 7_3:-15993832 | Msa1094380:five_prime_UTR |
| GTTTGTGAAATGGCCTAAGA+CGG | 0.581897 | 7_3:-15993514 | Msa1094380:CDS |
| TTGCCCTTGACAATGCAGTA+GGG | 0.602893 | 7_3:+15991809 | None:intergenic |
| CCAAAGCAATTTGGGATCGG+TGG | 0.603444 | 7_3:-15993567 | Msa1094380:CDS |
| TCATCAAACAACATTAACAA+TGG | 0.605250 | 7_3:-15993771 | Msa1094380:intron |
| AGGCCAAAGCAATTTGGGAT+CGG | 0.609688 | 7_3:-15993570 | Msa1094380:CDS |
| ATTCCCTACTGCATTGTCAA+GGG | 0.614650 | 7_3:-15991812 | Msa1094380:CDS |
| TCACCTCACAAACACCACTA+GGG | 0.622915 | 7_3:-15993831 | Msa1094380:five_prime_UTR |
| CTAAGACGGTTCAGATTCAG+AGG | 0.624798 | 7_3:-15993500 | Msa1094380:CDS |
| CAAAGAAAGACTCATTGCCA+AGG | 0.625721 | 7_3:-15991405 | Msa1094380:CDS |
| GTGAACTGGTTAAGAGCAGG+TGG | 0.627497 | 7_3:+15993444 | None:intergenic |
| AGGGCCCAAGCCGAATCTGA+GGG | 0.638813 | 7_3:-15992095 | Msa1094380:CDS |
| AGAAGAGGATCCTTAAGCAG+AGG | 0.647604 | 7_3:-15993476 | Msa1094380:CDS |
| GAAAACAGGAAGAAGTGGGG+TGG | 0.655947 | 7_3:-15991467 | Msa1094380:CDS |
| GCTCAATAAGATAGGTAACA+TGG | 0.658823 | 7_3:+15992024 | None:intergenic |
| GAGGAAAACAGGAAGAAGTG+GGG | 0.665767 | 7_3:-15991470 | Msa1094380:CDS |
| CAAATCTCAAGCGAAAACAA+AGG | 0.673595 | 7_3:-15991429 | Msa1094380:CDS |
| TTACAGGCACCAAAGCGCGG+TGG | 0.676428 | 7_3:-15993660 | Msa1094380:intron |
| AAACCCTAGTGGTGTTTGTG+AGG | 0.679022 | 7_3:+15993828 | None:intergenic |
| GGAATTCAGCAGAATCCTAG+AGG | 0.681733 | 7_3:-15991625 | Msa1094380:CDS |
| GCTCCTCAAGTACAGGCCTG+AGG | 0.691529 | 7_3:-15992150 | Msa1094380:CDS |
| ATGTTGTTTGATGAAAGAGG+CGG | 0.739370 | 7_3:+15993780 | None:intergenic |
| GTGCAATTGAGAAACCCTAG+TGG | 0.857036 | 7_3:+15993817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAAATTTGTGTTTAAT+TGG | - | chr7_3:15991662-15991681 | Msa1094380:CDS | 10.0% |
| !!! | TTGATTTAATTTAATTGATA+TGG | - | chr7_3:15991983-15992002 | Msa1094380:intron | 10.0% |
| !!! | TGATTTAATTTAATTGATAT+GGG | - | chr7_3:15991984-15992003 | Msa1094380:intron | 10.0% |
| !!! | TTTTAGATTTGGTTTTAATT+TGG | - | chr7_3:15991603-15991622 | Msa1094380:intron | 15.0% |
| !! | ATGTTTGATCAATAAAATTT+AGG | - | chr7_3:15991723-15991742 | Msa1094380:intron | 15.0% |
| !!! | GGTTATAATTGTTTAAAATA+AGG | - | chr7_3:15991806-15991825 | Msa1094380:CDS | 15.0% |
| !!! | TTTTGTTCTTTTTTAAGATA+AGG | - | chr7_3:15992205-15992224 | Msa1094380:intron | 15.0% |
| !!! | TTTGTTCTTTTTTAAGATAA+GGG | - | chr7_3:15992206-15992225 | Msa1094380:intron | 15.0% |
| !! | ATTATTGAAATCATGATTAT+TGG | - | chr7_3:15992703-15992722 | Msa1094380:intron | 15.0% |
| !! | TAGCTCATTTGTTTATAAAA+TGG | - | chr7_3:15991571-15991590 | Msa1094380:intron | 20.0% |
| !! | TTTATGTGTAATGCTTTAAT+GGG | - | chr7_3:15991628-15991647 | Msa1094380:CDS | 20.0% |
| !! | TGCTATTGTTATAGATTAAT+TGG | - | chr7_3:15991784-15991803 | Msa1094380:intron | 20.0% |
| !! | GCTATTGTTATAGATTAATT+GGG | - | chr7_3:15991785-15991804 | Msa1094380:intron | 20.0% |
| !! | TTAATGTGAAATGGTTTAAT+TGG | - | chr7_3:15992054-15992073 | Msa1094380:CDS | 20.0% |
| !! | TAATGTGAAATGGTTTAATT+GGG | - | chr7_3:15992055-15992074 | Msa1094380:CDS | 20.0% |
| !!! | GATGTTAGTTTAAATTGTTT+TGG | - | chr7_3:15992502-15992521 | Msa1094380:intron | 20.0% |
| !! | TACTTGTTCATATAAACAAA+AGG | + | chr7_3:15992966-15992985 | None:intergenic | 20.0% |
| !!! | TTTTTTACCTTCTATTTTTC+AGG | - | chr7_3:15993441-15993460 | Msa1094380:CDS | 20.0% |
| !!! | TTGTTATTGTCCTATATTTT+TGG | - | chr7_3:15993633-15993652 | Msa1094380:CDS | 20.0% |
| !!! | AGTTGTTTTAGACTTAAAAA+TGG | - | chr7_3:15993761-15993780 | Msa1094380:intron | 20.0% |
| ! | TAAAAGGGTTATGAAAATGT+GGG | + | chr7_3:15991100-15991119 | None:intergenic | 25.0% |
| ! | TTAAAAGGGTTATGAAAATG+TGG | + | chr7_3:15991101-15991120 | None:intergenic | 25.0% |
| !! | TTAATGTTGTTTGATGAAAG+AGG | + | chr7_3:15991180-15991199 | None:intergenic | 25.0% |
| ! | TCATCAAACAACATTAACAA+TGG | - | chr7_3:15991183-15991202 | Msa1094380:three_prime_UTR | 25.0% |
| !! | GCGATTATGTTAATTTTTAC+AGG | - | chr7_3:15991278-15991297 | Msa1094380:three_prime_UTR | 25.0% |
| !!! | GGTGATTATGTTTTTAGATT+TGG | - | chr7_3:15991592-15991611 | Msa1094380:intron | 25.0% |
| ! | GTTTATGTGTAATGCTTTAA+TGG | - | chr7_3:15991627-15991646 | Msa1094380:CDS | 25.0% |
| ! | ATTTGTGTTTAATTGGCATA+TGG | - | chr7_3:15991669-15991688 | Msa1094380:CDS | 25.0% |
| ! | ATGGTATTTGATATGTGTAA+TGG | - | chr7_3:15991934-15991953 | Msa1094380:intron | 25.0% |
| ! | TGGTATTTGATATGTGTAAT+GGG | - | chr7_3:15991935-15991954 | Msa1094380:intron | 25.0% |
| ! | AAGTTTCATTTCTTTGTTCT+GGG | - | chr7_3:15992157-15992176 | Msa1094380:CDS | 25.0% |
| !!! | TGTTTATTTTGTCTATTGCT+TGG | - | chr7_3:15992283-15992302 | Msa1094380:intron | 25.0% |
| !!! | TGTTTATTTTGTCTATTGCT+TGG | - | chr7_3:15992283-15992302 | Msa1094380:intron | 25.0% |
| !!! | TGTTTATTTTATCGATTGCA+TGG | - | chr7_3:15992429-15992448 | Msa1094380:intron | 25.0% |
| ! | GGAAATAGTATATGATAGTT+TGG | - | chr7_3:15992450-15992469 | Msa1094380:intron | 25.0% |
| !!! | TAAATTGTTTTGGAACATGT+TGG | - | chr7_3:15992512-15992531 | Msa1094380:intron | 25.0% |
| ! | TACCAATCAAAAACAAAAGA+CGG | + | chr7_3:15992590-15992609 | None:intergenic | 25.0% |
| ! | ATCCAAAAATCACAAAACAA+TGG | + | chr7_3:15992685-15992704 | None:intergenic | 25.0% |
| ! | AAGCCTATTAATGTGAAATA+TGG | - | chr7_3:15992901-15992920 | Msa1094380:intron | 25.0% |
| ! | AGTCCATATTTCACATTAAT+AGG | + | chr7_3:15992907-15992926 | None:intergenic | 25.0% |
| ! | TTATTACTAACTGTAACTTG+TGG | - | chr7_3:15993023-15993042 | Msa1094380:intron | 25.0% |
| ! | GTCACAAATTATAAATTCAC+AGG | + | chr7_3:15993221-15993240 | None:intergenic | 25.0% |
| ! | AAAATGAACAATCAAATCTC+TGG | + | chr7_3:15993373-15993392 | None:intergenic | 25.0% |
| !! | GGTTAATTTTATTGAGCTAT+CGG | + | chr7_3:15993410-15993429 | None:intergenic | 25.0% |
| ! | AGGTAAAAAACGAACATAAA+AGG | + | chr7_3:15993431-15993450 | None:intergenic | 25.0% |
| ! | TAACTTTAACGACAAATTTG+AGG | - | chr7_3:15993465-15993484 | Msa1094380:CDS | 25.0% |
| ! | CTAAAAATAACCAAAGCAAA+TGG | + | chr7_3:15993603-15993622 | None:intergenic | 25.0% |
| !!! | TGGTTATTTTTAGAACTTTG+AGG | - | chr7_3:15993610-15993629 | Msa1094380:CDS | 25.0% |
| !!! | TTATTGTCCTATATTTTTGG+TGG | - | chr7_3:15993636-15993655 | Msa1094380:CDS | 25.0% |
| TTTGTGAGGTGAACTTAAAA+GGG | + | chr7_3:15991115-15991134 | None:intergenic | 30.0% | |
| ATTTGACAAGGTTTGTGAAA+TGG | - | chr7_3:15991430-15991449 | Msa1094380:CDS | 30.0% | |
| AAGACACTCGATAAAAATCT+CGG | - | chr7_3:15991534-15991553 | Msa1094380:intron | 30.0% | |
| TGTTTATTATGTTGAGTGCT+TGG | - | chr7_3:15991909-15991928 | Msa1094380:intron | 30.0% | |
| GATTTCGTGTTAATGTGAAA+TGG | - | chr7_3:15992045-15992064 | Msa1094380:CDS | 30.0% | |
| ATTGGGTGGTTGTTAAAATT+TGG | - | chr7_3:15992072-15992091 | Msa1094380:CDS | 30.0% | |
| TTGGGTGGTTGTTAAAATTT+GGG | - | chr7_3:15992073-15992092 | Msa1094380:CDS | 30.0% | |
| GAAGTTTCATTTCTTTGTTC+TGG | - | chr7_3:15992156-15992175 | Msa1094380:CDS | 30.0% | |
| TTGGATAGTATGTGATAGTT+TGG | - | chr7_3:15992302-15992321 | Msa1094380:intron | 30.0% | |
| GTATATGATAGTTTGGACTT+TGG | - | chr7_3:15992457-15992476 | Msa1094380:intron | 30.0% | |
| ATCACAAATACGATAGTCTT+CGG | + | chr7_3:15992565-15992584 | None:intergenic | 30.0% | |
| ACCAATCAAAAACAAAAGAC+GGG | + | chr7_3:15992589-15992608 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTATGACTATTGA+AGG | - | chr7_3:15992614-15992633 | Msa1094380:intron | 30.0% |
| !! | GACCATTGTTTTGTGATTTT+TGG | - | chr7_3:15992680-15992699 | Msa1094380:intron | 30.0% |
| ATTCACAGGTGAAAATTCTA+TGG | + | chr7_3:15993207-15993226 | None:intergenic | 30.0% | |
| ! | CATTTTGTCTTCATTCTTGA+CGG | + | chr7_3:15993310-15993329 | None:intergenic | 30.0% |
| ! | AAGTTAGCCTGAAAAATAGA+AGG | + | chr7_3:15993451-15993470 | None:intergenic | 30.0% |
| AAAACCTCCACCAAAAATAT+AGG | + | chr7_3:15993646-15993665 | None:intergenic | 30.0% | |
| TTACAAGCTAACAGAATGAA+AGG | + | chr7_3:15993692-15993711 | None:intergenic | 30.0% | |
| AGCTTGTAATTCACAATCAA+TGG | - | chr7_3:15993703-15993722 | Msa1094380:intron | 30.0% | |
| ! | AAATAAATCAGCAAAAGTGC+AGG | + | chr7_3:15993737-15993756 | None:intergenic | 30.0% |
| GTTTGTGAGGTGAACTTAAA+AGG | + | chr7_3:15991116-15991135 | None:intergenic | 35.0% | |
| ! | ATGTTGTTTGATGAAAGAGG+CGG | + | chr7_3:15991177-15991196 | None:intergenic | 35.0% |
| AACCTTGTCAAATCTCTCTT+TGG | + | chr7_3:15991423-15991442 | None:intergenic | 35.0% | |
| ! | ATTGGCATATGGTCTTAGTT+TGG | - | chr7_3:15991680-15991699 | Msa1094380:CDS | 35.0% |
| TTATGTTGAGTGCTTGGAAA+TGG | - | chr7_3:15991915-15991934 | Msa1094380:intron | 35.0% | |
| TGTGAAATGGTTTAATTGGG+TGG | - | chr7_3:15992058-15992077 | Msa1094380:CDS | 35.0% | |
| !! | TAGTTTGGACTTTGGAGTAA+TGG | - | chr7_3:15992465-15992484 | Msa1094380:intron | 35.0% |
| TGACTATTGAAGGTTCTGTA+TGG | - | chr7_3:15992624-15992643 | Msa1094380:intron | 35.0% | |
| GCTCAATAAGATAGGTAACA+TGG | + | chr7_3:15992933-15992952 | None:intergenic | 35.0% | |
| TGTTACCTATCTTATTGAGC+AGG | - | chr7_3:15992933-15992952 | Msa1094380:intron | 35.0% | |
| CGTCAAGAATGAAGACAAAA+TGG | - | chr7_3:15993308-15993327 | Msa1094380:intron | 35.0% | |
| ! | TCTGGTTTGAATTACCTTGA+TGG | + | chr7_3:15993355-15993374 | None:intergenic | 35.0% |
| ACGACAAATTTGAGGAAAAC+AGG | - | chr7_3:15993473-15993492 | Msa1094380:CDS | 35.0% | |
| !!! | CTTTGTTTTCGCTTGAGATT+TGG | + | chr7_3:15993527-15993546 | None:intergenic | 35.0% |
| CAAATCTCAAGCGAAAACAA+AGG | - | chr7_3:15993525-15993544 | Msa1094380:CDS | 35.0% | |
| CCAAAGCAAATGGAATTTCT+AGG | + | chr7_3:15993593-15993612 | None:intergenic | 35.0% | |
| CCTAGAAATTCCATTTGCTT+TGG | - | chr7_3:15993590-15993609 | Msa1094380:CDS | 35.0% | |
| !!! | TTGTCCTATATTTTTGGTGG+AGG | - | chr7_3:15993639-15993658 | Msa1094380:CDS | 35.0% |
| AGAGAGAGAGAGAGAGATTA+GGG | + | chr7_3:15991212-15991231 | None:intergenic | 40.0% | |
| ! | GAAGAATACAGCACTGAAAG+TGG | - | chr7_3:15991341-15991360 | Msa1094380:three_prime_UTR | 40.0% |
| !!! | TGAACCCACTTTTTGAGAAG+AGG | - | chr7_3:15991364-15991383 | Msa1094380:exon | 40.0% |
| TTGGCCTCTTCTCAAAAAGT+GGG | + | chr7_3:15991371-15991390 | None:intergenic | 40.0% | |
| TTTGGCCTCTTCTCAAAAAG+TGG | + | chr7_3:15991372-15991391 | None:intergenic | 40.0% | |
| AGAAGAGGCCAAAGCAATTT+GGG | - | chr7_3:15991379-15991398 | Msa1094380:exon | 40.0% | |
| CTTGTCAAATCTCTCTTTGG+TGG | + | chr7_3:15991420-15991439 | None:intergenic | 40.0% | |
| CACCAAAGAGAGATTTGACA+AGG | - | chr7_3:15991418-15991437 | Msa1094380:CDS | 40.0% | |
| GTTTGTGAAATGGCCTAAGA+CGG | - | chr7_3:15991440-15991459 | Msa1094380:CDS | 40.0% | |
| TTCAGATTCAGAGGAAGAAG+AGG | - | chr7_3:15991463-15991482 | Msa1094380:CDS | 40.0% | |
| TTAGTGAACTGGTTAAGAGC+AGG | + | chr7_3:15991516-15991535 | None:intergenic | 40.0% | |
| TATCGAGTGTCTTAGTGAAC+TGG | + | chr7_3:15991527-15991546 | None:intergenic | 40.0% | |
| !! | TTGGACTTTGGAGTAATGGT+AGG | - | chr7_3:15992469-15992488 | Msa1094380:intron | 40.0% |
| !!! | GCCCGTCTTTTGTTTTTGAT+TGG | - | chr7_3:15992585-15992604 | Msa1094380:intron | 40.0% |
| !! | ACTTGAGGAGCATCTTGAAA+AGG | + | chr7_3:15992795-15992814 | None:intergenic | 40.0% |
| ! | TTCTTTTCTGCTTTGTCCTC+AGG | + | chr7_3:15992823-15992842 | None:intergenic | 40.0% |
| TGAGGACAAAGCAGAAAAGA+AGG | - | chr7_3:15992822-15992841 | Msa1094380:intron | 40.0% | |
| AGAAGGAACGTCTCTTGAAA+AGG | - | chr7_3:15992839-15992858 | Msa1094380:intron | 40.0% | |
| GAAGGAACGTCTCTTGAAAA+GGG | - | chr7_3:15992840-15992859 | Msa1094380:intron | 40.0% | |
| CAGTACCTGCTCAATAAGAT+AGG | + | chr7_3:15992941-15992960 | None:intergenic | 40.0% | |
| !!! | CTTGTGGCTTTTTCAGAACA+AGG | - | chr7_3:15993039-15993058 | Msa1094380:intron | 40.0% |
| AATTCCCTACTGCATTGTCA+AGG | - | chr7_3:15993141-15993160 | Msa1094380:intron | 40.0% | |
| ATTCCCTACTGCATTGTCAA+GGG | - | chr7_3:15993142-15993161 | Msa1094380:intron | 40.0% | |
| TTGAGGAAAACAGGAAGAAG+TGG | - | chr7_3:15993482-15993501 | Msa1094380:CDS | 40.0% | |
| TGAGGAAAACAGGAAGAAGT+GGG | - | chr7_3:15993483-15993502 | Msa1094380:CDS | 40.0% | |
| CTTGGCAATGAGTCTTTCTT+TGG | + | chr7_3:15993551-15993570 | None:intergenic | 40.0% | |
| CAAAGAAAGACTCATTGCCA+AGG | - | chr7_3:15993549-15993568 | Msa1094380:CDS | 40.0% | |
| TTCACCTCACAAACACCACT+AGG | - | chr7_3:15991122-15991141 | Msa1094380:three_prime_UTR | 45.0% | |
| TCACCTCACAAACACCACTA+GGG | - | chr7_3:15991123-15991142 | Msa1094380:three_prime_UTR | 45.0% | |
| AAACCCTAGTGGTGTTTGTG+AGG | + | chr7_3:15991129-15991148 | None:intergenic | 45.0% | |
| GTGCAATTGAGAAACCCTAG+TGG | + | chr7_3:15991140-15991159 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGAGAGATT+AGG | + | chr7_3:15991213-15991232 | None:intergenic | 45.0% | |
| ! | TTTTTACAGGCACCAAAGCG+CGG | - | chr7_3:15991291-15991310 | Msa1094380:three_prime_UTR | 45.0% |
| GAGAAGAGGCCAAAGCAATT+TGG | - | chr7_3:15991378-15991397 | Msa1094380:exon | 45.0% | |
| ! | AGGCCAAAGCAATTTGGGAT+CGG | - | chr7_3:15991384-15991403 | Msa1094380:CDS | 45.0% |
| CTCTGAATCTGAACCGTCTT+AGG | + | chr7_3:15991456-15991475 | None:intergenic | 45.0% | |
| CTAAGACGGTTCAGATTCAG+AGG | - | chr7_3:15991454-15991473 | Msa1094380:CDS | 45.0% | |
| AGAAGAGGATCCTTAAGCAG+AGG | - | chr7_3:15991478-15991497 | Msa1094380:CDS | 45.0% | |
| GATCCTTAAGCAGAGGTTGA+AGG | - | chr7_3:15991485-15991504 | Msa1094380:CDS | 45.0% | |
| GAACCTTCAACCTCTGCTTA+AGG | + | chr7_3:15991491-15991510 | None:intergenic | 45.0% | |
| TCAAGATGCTCCTCAAGTAC+AGG | - | chr7_3:15992797-15992816 | Msa1094380:intron | 45.0% | |
| ! | GACTGTTTTGCCCTCAGATT+CGG | + | chr7_3:15992872-15992891 | None:intergenic | 45.0% |
| GACGTACGAGTATGAGAGTA+TGG | + | chr7_3:15992990-15993009 | None:intergenic | 45.0% | |
| ! | TTTTCAGAACAAGGCACAGC+TGG | - | chr7_3:15993048-15993067 | Msa1094380:intron | 45.0% |
| ! | TCCAGCTTTGTGCAGAAAGA+TGG | - | chr7_3:15993117-15993136 | Msa1094380:intron | 45.0% |
| TCCATCTTTCTGCACAAAGC+TGG | + | chr7_3:15993121-15993140 | None:intergenic | 45.0% | |
| TTGCCCTTGACAATGCAGTA+GGG | + | chr7_3:15993148-15993167 | None:intergenic | 45.0% | |
| TTTGCCCTTGACAATGCAGT+AGG | + | chr7_3:15993149-15993168 | None:intergenic | 45.0% | |
| GACGGTTGTCAAGCACAAAA+CGG | + | chr7_3:15993292-15993311 | None:intergenic | 45.0% | |
| GGAATTCAGCAGAATCCTAG+AGG | - | chr7_3:15993329-15993348 | Msa1094380:intron | 45.0% | |
| ! | GAATTACCTTGATGGCCTCT+AGG | + | chr7_3:15993347-15993366 | None:intergenic | 45.0% |
| GAGGAAAACAGGAAGAAGTG+GGG | - | chr7_3:15993484-15993503 | Msa1094380:CDS | 45.0% | |
| ! | AAGTGGGGTGGTGGTATTAT+GGG | - | chr7_3:15993499-15993518 | Msa1094380:CDS | 45.0% |
| CATTCTTTGAGCAGCTTCCT+TGG | + | chr7_3:15993569-15993588 | None:intergenic | 45.0% | |
| TTCTTCTTCGCTGCTGCAAC+TGG | + | chr7_3:15991327-15991346 | None:intergenic | 50.0% | |
| CCACCGATCCCAAATTGCTT+TGG | + | chr7_3:15991390-15991409 | None:intergenic | 50.0% | |
| ! | CCAAAGCAATTTGGGATCGG+TGG | - | chr7_3:15991387-15991406 | Msa1094380:CDS | 50.0% |
| GTGAACTGGTTAAGAGCAGG+TGG | + | chr7_3:15991513-15991532 | None:intergenic | 50.0% | |
| TTTGCCCTCAGATTCGGCTT+GGG | + | chr7_3:15992866-15992885 | None:intergenic | 50.0% | |
| ! | TTTTGCCCTCAGATTCGGCT+TGG | + | chr7_3:15992867-15992886 | None:intergenic | 50.0% |
| ACCCAATTGAGCTCGTTGTC+TGG | - | chr7_3:15993092-15993111 | Msa1094380:intron | 50.0% | |
| GCCAGACAACGAGCTCAATT+GGG | + | chr7_3:15993096-15993115 | None:intergenic | 50.0% | |
| AGCCAGACAACGAGCTCAAT+TGG | + | chr7_3:15993097-15993116 | None:intergenic | 50.0% | |
| TGTCAAGGGCAAAGCACGTT+TGG | - | chr7_3:15993156-15993175 | Msa1094380:intron | 50.0% | |
| GTCAAGGGCAAAGCACGTTT+GGG | - | chr7_3:15993157-15993176 | Msa1094380:intron | 50.0% | |
| CAGAATCCTAGAGGCCATCA+AGG | - | chr7_3:15993338-15993357 | Msa1094380:intron | 50.0% | |
| GAAAACAGGAAGAAGTGGGG+TGG | - | chr7_3:15993487-15993506 | Msa1094380:CDS | 50.0% | |
| ! | GAAGTGGGGTGGTGGTATTA+TGG | - | chr7_3:15993498-15993517 | Msa1094380:CDS | 50.0% |
| TGTCCTCAGGCCTGTACTTG+AGG | + | chr7_3:15992810-15992829 | None:intergenic | 55.0% | |
| AACAGGAAGAAGTGGGGTGG+TGG | - | chr7_3:15993490-15993509 | Msa1094380:CDS | 55.0% | |
| TTACAGGCACCAAAGCGCGG+TGG | - | chr7_3:15991294-15991313 | Msa1094380:three_prime_UTR | 60.0% | |
| ! | GGTGCTTTTCCACCGCGCTT+TGG | + | chr7_3:15991306-15991325 | None:intergenic | 60.0% |
| GCTCCTCAAGTACAGGCCTG+AGG | - | chr7_3:15992804-15992823 | Msa1094380:intron | 60.0% | |
| AAGGGCCCAAGCCGAATCTG+AGG | - | chr7_3:15992858-15992877 | Msa1094380:intron | 60.0% | |
| AGGGCCCAAGCCGAATCTGA+GGG | - | chr7_3:15992859-15992878 | Msa1094380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 15991091 | 15993885 | 15991091 | ID=Msa1094380;Name=Msa1094380 |
| chr7_3 | mRNA | 15991091 | 15993885 | 15991091 | ID=Msa1094380-mRNA-1;Parent=Msa1094380;Name=Msa1094380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=111|1|1|1|1|1|6|291|260 |
| chr7_3 | exon | 15991091 | 15991513 | 15991091 | ID=Msa1094380-mRNA-1:exon:3622;Parent=Msa1094380-mRNA-1 |
| chr7_3 | exon | 15991617 | 15991709 | 15991617 | ID=Msa1094380-mRNA-1:exon:3621;Parent=Msa1094380-mRNA-1 |
| chr7_3 | exon | 15991793 | 15991921 | 15991793 | ID=Msa1094380-mRNA-1:exon:3620;Parent=Msa1094380-mRNA-1 |
| chr7_3 | exon | 15992022 | 15992191 | 15992022 | ID=Msa1094380-mRNA-1:exon:3619;Parent=Msa1094380-mRNA-1 |
| chr7_3 | exon | 15993421 | 15993676 | 15993421 | ID=Msa1094380-mRNA-1:exon:3618;Parent=Msa1094380-mRNA-1 |
| chr7_3 | exon | 15993772 | 15993885 | 15993772 | ID=Msa1094380-mRNA-1:exon:3617;Parent=Msa1094380-mRNA-1 |
| chr7_3 | five_prime_UTR | 15993775 | 15993885 | 15993775 | ID=Msa1094380-mRNA-1:five_prime_utr;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15993772 | 15993774 | 15993772 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15993421 | 15993676 | 15993421 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15992022 | 15992191 | 15992022 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15991793 | 15991921 | 15991793 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15991617 | 15991709 | 15991617 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | CDS | 15991382 | 15991513 | 15991382 | ID=Msa1094380-mRNA-1:cds;Parent=Msa1094380-mRNA-1 |
| chr7_3 | three_prime_UTR | 15991091 | 15991381 | 15991091 | ID=Msa1094380-mRNA-1:three_prime_utr;Parent=Msa1094380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
