Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590940 | XP_013464059.1 | 94.805 | 231 | 8 | 2 | 1 | 227 | 1 | 231 | 1.76e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590940 | sp|P93447|EF1D_SPUBR | 78.355 | 231 | 41 | 3 | 1 | 227 | 1 | 226 | 8.61e-118 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590940 | A0A072V7Q9 | 94.805 | 231 | 8 | 2 | 1 | 227 | 1 | 231 | 8.42e-129 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025110 | Msa0590940 | 0.804281 | 2.329070e-49 | -8.615850e-47 |
| Msa0032780 | Msa0590940 | 0.812905 | 3.350457e-51 | -8.615850e-47 |
| Msa0032810 | Msa0590940 | 0.858662 | 7.060790e-63 | -8.615850e-47 |
| Msa0042280 | Msa0590940 | 0.825867 | 3.707765e-54 | -8.615850e-47 |
| Msa0045730 | Msa0590940 | 0.842821 | 2.045944e-58 | -8.615850e-47 |
| Msa0048180 | Msa0590940 | 0.807338 | 5.306613e-50 | -8.615850e-47 |
| Msa0049690 | Msa0590940 | 0.820065 | 8.350316e-53 | -8.615850e-47 |
| Msa0076040 | Msa0590940 | 0.812378 | 4.368396e-51 | -8.615850e-47 |
| Msa0077010 | Msa0590940 | 0.823098 | 1.663016e-53 | -8.615850e-47 |
| Msa0082280 | Msa0590940 | 0.822689 | 2.071388e-53 | -8.615850e-47 |
| Msa0116130 | Msa0590940 | 0.828219 | 1.015344e-54 | -8.615850e-47 |
| Msa0128860 | Msa0590940 | 0.806362 | 8.535412e-50 | -8.615850e-47 |
| Msa0133540 | Msa0590940 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0163760 | Msa0590940 | 0.812554 | 3.999575e-51 | -8.615850e-47 |
| Msa0167480 | Msa0590940 | 0.835657 | 1.476835e-56 | -8.615850e-47 |
| Msa0174730 | Msa0590940 | 0.804437 | 2.161653e-49 | -8.615850e-47 |
| Msa0174770 | Msa0590940 | 0.826509 | 2.609753e-54 | -8.615850e-47 |
| Msa0177960 | Msa0590940 | 0.811652 | 6.289970e-51 | -8.615850e-47 |
| Msa0179030 | Msa0590940 | 0.829910 | 3.951503e-55 | -8.615850e-47 |
| Msa0181490 | Msa0590940 | 0.800175 | 1.630616e-48 | -8.615850e-47 |
| Msa0181610 | Msa0590940 | 0.822687 | 2.073034e-53 | -8.615850e-47 |
| Msa0219120 | Msa0590940 | 0.853927 | 1.728732e-61 | -8.615850e-47 |
| Msa0221030 | Msa0590940 | 0.849942 | 2.338583e-60 | -8.615850e-47 |
| Msa0224560 | Msa0590940 | 0.875848 | 2.229649e-68 | -8.615850e-47 |
| Msa0230490 | Msa0590940 | 0.840563 | 8.065309e-58 | -8.615850e-47 |
| Msa0230520 | Msa0590940 | 0.820760 | 5.785080e-53 | -8.615850e-47 |
| Msa0231100 | Msa0590940 | 0.808365 | 3.210435e-50 | -8.615850e-47 |
| Msa0369450 | Msa0590940 | 0.830313 | 3.151070e-55 | -8.615850e-47 |
| Msa0376820 | Msa0590940 | 0.805653 | 1.203088e-49 | -8.615850e-47 |
| Msa0423750 | Msa0590940 | 0.843462 | 1.380582e-58 | -8.615850e-47 |
| Msa0427150 | Msa0590940 | 0.824944 | 6.132655e-54 | -8.615850e-47 |
| Msa0443390 | Msa0590940 | 0.846962 | 1.561786e-59 | -8.615850e-47 |
| Msa0472130 | Msa0590940 | 0.803662 | 3.132376e-49 | -8.615850e-47 |
| Msa0481850 | Msa0590940 | 0.813963 | 1.961392e-51 | -8.615850e-47 |
| Msa0244780 | Msa0590940 | 0.803419 | 3.517559e-49 | -8.615850e-47 |
| Msa0258850 | Msa0590940 | 0.853597 | 2.151157e-61 | -8.615850e-47 |
| Msa0298200 | Msa0590940 | 0.855224 | 7.281049e-62 | -8.615850e-47 |
| Msa0304590 | Msa0590940 | 0.811284 | 7.560259e-51 | -8.615850e-47 |
| Msa0304660 | Msa0590940 | 0.808531 | 2.958630e-50 | -8.615850e-47 |
| Msa0306690 | Msa0590940 | 0.810757 | 9.837055e-51 | -8.615850e-47 |
| Msa0327300 | Msa0590940 | 0.808575 | 2.895204e-50 | -8.615850e-47 |
| Msa0331700 | Msa0590940 | 0.811959 | 5.392102e-51 | -8.615850e-47 |
| Msa0332640 | Msa0590940 | 0.805275 | 1.443854e-49 | -8.615850e-47 |
| Msa0333190 | Msa0590940 | 0.835562 | 1.561546e-56 | -8.615850e-47 |
| Msa0336010 | Msa0590940 | 0.807429 | 5.076788e-50 | -8.615850e-47 |
| Msa0348830 | Msa0590940 | 0.871166 | 8.403046e-67 | -8.615850e-47 |
| Msa0490820 | Msa0590940 | 0.900113 | 1.013261e-77 | -8.615850e-47 |
| Msa0526540 | Msa0590940 | 0.809013 | 2.333286e-50 | -8.615850e-47 |
| Msa0527150 | Msa0590940 | 0.808292 | 3.327717e-50 | -8.615850e-47 |
| Msa0531650 | Msa0590940 | 0.856207 | 3.761511e-62 | -8.615850e-47 |
| Msa0534750 | Msa0590940 | 0.952356 | 2.889749e-110 | -8.615850e-47 |
| Msa0576940 | Msa0590940 | 0.815216 | 1.035588e-51 | -8.615850e-47 |
| Msa0581070 | Msa0590940 | 0.805547 | 1.266418e-49 | -8.615850e-47 |
| Msa0581110 | Msa0590940 | 0.802751 | 4.834294e-49 | -8.615850e-47 |
| Msa0590940 | Msa0593700 | 0.805986 | 1.024316e-49 | -8.615850e-47 |
| Msa0590940 | Msa0604960 | 0.844326 | 8.102253e-59 | -8.615850e-47 |
| Msa0590940 | Msa0615580 | 0.821202 | 4.575689e-53 | -8.615850e-47 |
| Msa0590940 | Msa0622750 | 0.823914 | 1.071561e-53 | -8.615850e-47 |
| Msa0590940 | Msa0623200 | 0.830665 | 2.584469e-55 | -8.615850e-47 |
| Msa0590940 | Msa0625570 | 0.811647 | 6.305857e-51 | -8.615850e-47 |
| Msa0590940 | Msa0633570 | 0.817740 | 2.818844e-52 | -8.615850e-47 |
| Msa0590940 | Msa0659030 | 0.814573 | 1.438473e-51 | -8.615850e-47 |
| Msa0590940 | Msa0666230 | 0.827653 | 1.388892e-54 | -8.615850e-47 |
| Msa0590940 | Msa0669520 | 0.832061 | 1.171488e-55 | -8.615850e-47 |
| Msa0590940 | Msa0683780 | 0.832791 | 7.728038e-56 | -8.615850e-47 |
| Msa0590940 | Msa0698780 | 0.820401 | 6.992779e-53 | -8.615850e-47 |
| Msa0590940 | Msa0705000 | 0.831169 | 1.944424e-55 | -8.615850e-47 |
| Msa0590940 | Msa0705040 | 0.831359 | 1.745955e-55 | -8.615850e-47 |
| Msa0590940 | Msa0712610 | 0.830602 | 2.677874e-55 | -8.615850e-47 |
| Msa0590940 | Msa0729200 | 0.830077 | 3.598625e-55 | -8.615850e-47 |
| Msa0590940 | Msa0752910 | 0.813259 | 2.802069e-51 | -8.615850e-47 |
| Msa0590940 | Msa0769590 | 0.828177 | 1.039034e-54 | -8.615850e-47 |
| Msa0590940 | Msa0781080 | 0.834931 | 2.253443e-56 | -8.615850e-47 |
| Msa0590940 | Msa0785130 | 0.836418 | 9.468199e-57 | -8.615850e-47 |
| Msa0590940 | Msa0792420 | 0.842305 | 2.805067e-58 | -8.615850e-47 |
| Msa0590940 | Msa0806880 | 0.818605 | 1.796061e-52 | -8.615850e-47 |
| Msa0590940 | Msa0808800 | 0.822021 | 2.959744e-53 | -8.615850e-47 |
| Msa0590940 | Msa0817540 | 0.825356 | 4.901350e-54 | -8.615850e-47 |
| Msa0590940 | Msa0867060 | 0.818377 | 2.022998e-52 | -8.615850e-47 |
| Msa0590940 | Msa0888810 | 0.814486 | 1.503592e-51 | -8.615850e-47 |
| Msa0590940 | Msa0945480 | 0.849932 | 2.353809e-60 | -8.615850e-47 |
| Msa0590940 | Msa0963020 | 0.807589 | 4.694543e-50 | -8.615850e-47 |
| Msa0590940 | Msa1019240 | 0.841219 | 5.425992e-58 | -8.615850e-47 |
| Msa0590940 | Msa1019260 | 0.843851 | 1.086375e-58 | -8.615850e-47 |
| Msa0590940 | Msa1078870 | 0.802450 | 5.577182e-49 | -8.615850e-47 |
| Msa0590940 | Msa1080350 | 0.810974 | 8.824779e-51 | -8.615850e-47 |
| Msa0590940 | Msa1094380 | 0.805192 | 1.502899e-49 | -8.615850e-47 |
| Msa0590940 | Msa1104210 | 0.831443 | 1.664438e-55 | -8.615850e-47 |
| Msa0590940 | Msa1125500 | 0.813711 | 2.228481e-51 | -8.615850e-47 |
| Msa0590940 | Msa1125580 | 0.802590 | 5.219095e-49 | -8.615850e-47 |
| Msa0590940 | Msa1125860 | 0.809152 | 2.179196e-50 | -8.615850e-47 |
| Msa0590940 | Msa1126060 | 0.805760 | 1.142400e-49 | -8.615850e-47 |
| Msa0590940 | Msa1126510 | 0.827730 | 1.331508e-54 | -8.615850e-47 |
| Msa0590940 | Msa1126830 | 0.807623 | 4.617716e-50 | -8.615850e-47 |
| Msa0590940 | Msa1131560 | 0.811196 | 7.900633e-51 | -8.615850e-47 |
| Msa0590940 | Msa1165780 | 0.806128 | 9.560689e-50 | -8.615850e-47 |
| Msa0590940 | Msa1166860 | 0.834036 | 3.780690e-56 | -8.615850e-47 |
| Msa0590940 | Msa1166870 | 0.830520 | 2.804642e-55 | -8.615850e-47 |
| Msa0590940 | Msa1179950 | 0.801343 | 9.416713e-49 | -8.615850e-47 |
| Msa0590940 | Msa1179980 | 0.806975 | 6.334444e-50 | -8.615850e-47 |
| Msa0590940 | Msa1184370 | 0.832989 | 6.897752e-56 | -8.615850e-47 |
| Msa0590940 | Msa1208020 | 0.829975 | 3.808894e-55 | -8.615850e-47 |
| Msa0590940 | Msa1227690 | 0.839167 | 1.862658e-57 | -8.615850e-47 |
| Msa0590940 | Msa1234830 | 0.802887 | 4.531523e-49 | -8.615850e-47 |
| Msa0590940 | Msa1241190 | 0.818823 | 1.602739e-52 | -8.615850e-47 |
| Msa0590940 | Msa1256840 | 0.827566 | 1.457245e-54 | -8.615850e-47 |
| Msa0590940 | Msa1266060 | 0.817277 | 3.585085e-52 | -8.615850e-47 |
| Msa0590940 | Msa1270690 | 0.801314 | 9.544499e-49 | -8.615850e-47 |
| Msa0590940 | Msa1305050 | 0.823977 | 1.035732e-53 | -8.615850e-47 |
| Msa0590940 | Msa1321790 | 0.845952 | 2.945609e-59 | -8.615850e-47 |
| Msa0590940 | Msa1332250 | 0.801769 | 7.701016e-49 | -8.615850e-47 |
| Msa0590940 | Msa1338190 | 0.848142 | 7.398604e-60 | -8.615850e-47 |
| Msa0590940 | Msa1343260 | 0.820685 | 6.019940e-53 | -8.615850e-47 |
| Msa0590940 | Msa1349570 | 0.832813 | 7.628491e-56 | -8.615850e-47 |
| Msa0590940 | Msa1356790 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa0590940 | Msa1362790 | 0.877295 | 7.047709e-69 | -8.615850e-47 |
| Msa0590940 | Msa1363330 | 0.805613 | 1.226751e-49 | -8.615850e-47 |
| Msa0590940 | Msa1369190 | 0.845186 | 4.750691e-59 | -8.615850e-47 |
| Msa0590940 | Msa1370860 | 0.826835 | 2.181493e-54 | -8.615850e-47 |
| Msa0590940 | Msa1379760 | 0.810904 | 9.140640e-51 | -8.615850e-47 |
| Msa0590940 | Msa1386600 | 0.804585 | 2.012776e-49 | -8.615850e-47 |
| Msa0590940 | Msa1389320 | 0.807444 | 5.039451e-50 | -8.615850e-47 |
| Msa0590940 | Msa1392590 | 0.803656 | 3.141815e-49 | -8.615850e-47 |
| Msa0590940 | Msa1410440 | 0.819459 | 1.148441e-52 | -8.615850e-47 |
| Msa0590940 | Msa1413260 | 0.837529 | 4.926682e-57 | -8.615850e-47 |
| Msa0590940 | Msa1413500 | 0.811264 | 7.636758e-51 | -8.615850e-47 |
| Msa0590940 | Msa1425670 | 0.838693 | 2.471881e-57 | -8.615850e-47 |
| Msa0590940 | Msa1426120 | 0.804411 | 2.187942e-49 | -8.615850e-47 |
| Msa0590940 | Msa1426490 | 0.814219 | 1.722441e-51 | -8.615850e-47 |
| Msa0590940 | Msa1427560 | 0.821408 | 4.102998e-53 | -8.615850e-47 |
| Msa0590940 | Msa1433310 | 0.840011 | 1.123924e-57 | -8.615850e-47 |
| Msa0590940 | Msa1437280 | 0.822641 | 2.125180e-53 | -8.615850e-47 |
| Msa0590940 | Msa1442850 | 0.821712 | 3.489543e-53 | -8.615850e-47 |
| Msa0590940 | Msa1450280 | 0.857142 | 1.996545e-62 | -8.615850e-47 |
| Msa0590940 | Msa1456050 | 0.833433 | 5.348197e-56 | -8.615850e-47 |
| Msa0590940 | Msa1462860 | 0.841360 | 4.981629e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590940 | MtrunA17_Chr2g0305121 | 94.805 | 231 | 8 | 2 | 1 | 227 | 1 | 231 | 8.45e-132 | 371 |
| Msa0590940 | MtrunA17_Chr4g0008681 | 93.939 | 231 | 10 | 2 | 1 | 227 | 1 | 231 | 3.51e-131 | 369 |
| Msa0590940 | MtrunA17_Chr5g0441161 | 58.515 | 229 | 87 | 4 | 1 | 227 | 1 | 223 | 1.33e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590940 | AT2G18110.1 | 78.509 | 228 | 44 | 3 | 5 | 227 | 4 | 231 | 1.41e-106 | 306 |
| Msa0590940 | AT1G30230.1 | 75.439 | 228 | 51 | 3 | 5 | 227 | 4 | 231 | 7.14e-101 | 292 |
| Msa0590940 | AT1G30230.2 | 75.439 | 228 | 51 | 3 | 5 | 227 | 4 | 231 | 2.70e-100 | 292 |
| Msa0590940 | AT5G12110.1 | 60.000 | 230 | 87 | 4 | 1 | 227 | 1 | 228 | 8.79e-75 | 226 |
| Msa0590940 | AT5G19510.1 | 60.699 | 229 | 83 | 3 | 1 | 227 | 1 | 224 | 4.10e-69 | 211 |
Find 79 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCTGTAGTTGTGTTTC+TGG | 0.123996 | 4_2:+14800236 | Msa0590940:intron |
| TGGAGTGTTATAATTATTTA+AGG | 0.166015 | 4_2:+14803391 | Msa0590940:three_prime_UTR |
| TTCAGTTGGAAGGGTTGTTC+TGG | 0.178098 | 4_2:+14800631 | Msa0590940:CDS |
| TCAGTTCCATCATATGAATA+TGG | 0.245099 | 4_2:+14800016 | Msa0590940:CDS |
| GTGATTTCATCTCCATTATC+TGG | 0.269255 | 4_2:+14803371 | Msa0590940:three_prime_UTR |
| TTCTTGGTTTGCACACTCTT+TGG | 0.272953 | 4_2:+14803436 | Msa0590940:intron |
| TCTTGTTTCCGTCGACAATA+TGG | 0.332439 | 4_2:+14803035 | Msa0590940:CDS |
| GCTGCCTTTGTGTCAGAAAC+TGG | 0.355924 | 4_2:-14800320 | None:intergenic |
| TCAGTTGGAAGGGTTGTTCT+GGG | 0.356979 | 4_2:+14800632 | Msa0590940:CDS |
| AATTATAACACTCCAGATAA+TGG | 0.362008 | 4_2:-14803383 | None:intergenic |
| CATTTGACATCAAAATTTCA+TGG | 0.366165 | 4_2:+14803461 | Msa0590940:three_prime_UTR |
| TTCTTGATACCGTACCCAAC+AGG | 0.380470 | 4_2:-14802982 | None:intergenic |
| TATAACCTTAAGGCTGAATC+TGG | 0.393170 | 4_2:+14799811 | Msa0590940:CDS |
| GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 4_2:+14800397 | Msa0590940:CDS |
| CTGGCAAAGTTTGCATAGCC+AGG | 0.396565 | 4_2:-14803501 | None:intergenic |
| TGTGTTTCTGGTGAGGGATC+TGG | 0.409370 | 4_2:+14800248 | Msa0590940:CDS |
| GATGACGATGTTGATTTGTT+TGG | 0.410866 | 4_2:+14800356 | Msa0590940:CDS |
| TCAAGCCAGATTCAGCCTTA+AGG | 0.411025 | 4_2:-14799816 | None:intergenic |
| TCAAATTATGCTTACTATTG+TGG | 0.416944 | 4_2:+14803008 | Msa0590940:CDS |
| GCAGCAGCCGTGAAGGCATC+CGG | 0.445711 | 4_2:+14800419 | Msa0590940:CDS |
| AGTCACATTCTATAACCTTA+AGG | 0.451347 | 4_2:+14799801 | Msa0590940:CDS |
| ATTATTAGAAATGACAATCA+AGG | 0.452951 | 4_2:+14803274 | Msa0590940:three_prime_UTR |
| ACTCTGGACATACTCGTTGA+TGG | 0.453826 | 4_2:-14803082 | None:intergenic |
| CAGTTCCATCATATGAATAT+GGG | 0.459928 | 4_2:+14800017 | Msa0590940:CDS |
| GTTGAGAGAGGCGAGATTGA+AGG | 0.469374 | 4_2:-14799347 | None:intergenic |
| GTACCCAACAGGGACAAGTT+TGG | 0.474254 | 4_2:-14802971 | None:intergenic |
| CAGCCAAACTTGTCCCTGTT+GGG | 0.476052 | 4_2:+14802968 | Msa0590940:intron |
| ATTTGACATCAAAATTTCAT+GGG | 0.489085 | 4_2:+14803462 | Msa0590940:three_prime_UTR |
| TTCCGTCGACAATATGGTTG+AGG | 0.490036 | 4_2:+14803041 | Msa0590940:CDS |
| TAATGTCATCCTTTGAAGCT+TGG | 0.497827 | 4_2:-14799973 | None:intergenic |
| AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 4_2:+14800617 | Msa0590940:CDS |
| ACATTCCCATATTCATATGA+TGG | 0.500557 | 4_2:-14800022 | None:intergenic |
| TGTAGTTGTGTTTCTGGTGA+GGG | 0.507744 | 4_2:+14800242 | Msa0590940:intron |
| GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 4_2:+14800621 | Msa0590940:CDS |
| TGGAAAATCATCTGTACTGT+TGG | 0.509794 | 4_2:+14800548 | Msa0590940:CDS |
| TGCAGAATTTGCAATTCGTA+TGG | 0.510245 | 4_2:+14803219 | Msa0590940:intron |
| AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 4_2:+14800396 | Msa0590940:CDS |
| TTCTTCGAGCTTCTTCATGT+CGG | 0.515820 | 4_2:-14800595 | None:intergenic |
| TATTCATATGATGGAACTGA+TGG | 0.520528 | 4_2:-14800013 | None:intergenic |
| AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 4_2:+14800382 | Msa0590940:CDS |
| GTTTAGGTACCAAGCTTCAA+AGG | 0.531194 | 4_2:+14799964 | Msa0590940:intron |
| ATGTCGGTTTCATCATCCCA+TGG | 0.531275 | 4_2:-14800579 | None:intergenic |
| CTCACACGCAGTTACATCAC+TGG | 0.535094 | 4_2:+14799859 | Msa0590940:CDS |
| ACAGCCAAACTTGTCCCTGT+TGG | 0.544104 | 4_2:+14802967 | Msa0590940:intron |
| CTCTGGACATACTCGTTGAT+GGG | 0.546234 | 4_2:-14803081 | None:intergenic |
| AAACTTGTCCCTGTTGGGTA+CGG | 0.548491 | 4_2:+14802973 | Msa0590940:CDS |
| CAGTTGGAAGGGTTGTTCTG+GGG | 0.550288 | 4_2:+14800633 | Msa0590940:CDS |
| TTCTGACACAAAGGCAGCTG+AGG | 0.553231 | 4_2:+14800325 | Msa0590940:CDS |
| CTGTAGTTGTGTTTCTGGTG+AGG | 0.556803 | 4_2:+14800241 | Msa0590940:intron |
| TACTGTTGGATGTGAAGCCA+TGG | 0.557522 | 4_2:+14800562 | Msa0590940:CDS |
| AATTTGCAATTCGTATGGCA+TGG | 0.560377 | 4_2:+14803224 | Msa0590940:exon |
| GGAACGGGCAGCAGCCGTGA+AGG | 0.572363 | 4_2:+14800412 | Msa0590940:CDS |
| TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 4_2:+14800622 | Msa0590940:CDS |
| TGGCAAAGTTTGCATAGCCA+GGG | 0.581911 | 4_2:-14803500 | None:intergenic |
| TTATTAGAAATGACAATCAA+GGG | 0.582016 | 4_2:+14803275 | Msa0590940:three_prime_UTR |
| AGGCCACAATGTCACAACTC+TGG | 0.585892 | 4_2:-14803098 | None:intergenic |
| ATCCTCAACCATATTGTCGA+CGG | 0.593242 | 4_2:-14803043 | None:intergenic |
| CACCGTGGAATCTTCTCTTG+TGG | 0.597197 | 4_2:+14800274 | Msa0590940:CDS |
| ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 4_2:+14800029 | Msa0590940:CDS |
| AGGTTTACCTGTGTTGAGAG+AGG | 0.599982 | 4_2:-14799359 | None:intergenic |
| TGGCATGGAGATCATTGTAG+TGG | 0.602926 | 4_2:+14803239 | Msa0590940:three_prime_UTR |
| GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 4_2:+14800391 | Msa0590940:CDS |
| AAATGACAGCAACAACAAGT+AGG | 0.612547 | 4_2:-14803331 | None:intergenic |
| TTTGACATCAAAATTTCATG+GGG | 0.615949 | 4_2:+14803463 | Msa0590940:three_prime_UTR |
| TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 4_2:-14800312 | None:intergenic |
| GGCATGGAGATCATTGTAGT+GGG | 0.628783 | 4_2:+14803240 | Msa0590940:three_prime_UTR |
| TCCTCCAGTTTCTGACACAA+AGG | 0.631021 | 4_2:+14800316 | Msa0590940:CDS |
| GCCTTTGTGTCAGAAACTGG+AGG | 0.631902 | 4_2:-14800317 | None:intergenic |
| GGGTATCGTCTAACAGACCC+TGG | 0.635925 | 4_2:+14803483 | Msa0590940:three_prime_UTR |
| TCACACGCAGTTACATCACT+GGG | 0.638579 | 4_2:+14799860 | Msa0590940:CDS |
| TGTCCAGAGTTGTGACATTG+TGG | 0.639251 | 4_2:+14803095 | Msa0590940:CDS |
| TGATGTAACTGCGTGTGAGA+AGG | 0.646574 | 4_2:-14799855 | None:intergenic |
| AGCCACAAGAGAAGATTCCA+CGG | 0.646775 | 4_2:-14800276 | None:intergenic |
| ACTGTTGGATGTGAAGCCAT+GGG | 0.650142 | 4_2:+14800563 | Msa0590940:CDS |
| TCTTGATACCGTACCCAACA+GGG | 0.655761 | 4_2:-14802981 | None:intergenic |
| TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 4_2:+14800370 | Msa0590940:CDS |
| AATCTCGCCTCTCTCAACAC+AGG | 0.689189 | 4_2:+14799352 | Msa0590940:five_prime_UTR |
| TGAGGGATCTGGTGTCACCG+TGG | 0.761218 | 4_2:+14800259 | Msa0590940:CDS |
| AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 4_2:+14800032 | Msa0590940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAAAAAATTGAATTTTT+TGG | + | chr4_2:14799484-14799503 | Msa0590940:intron | 10.0% |
| !!! | ATTGAGTATATTTTTTTTTT+TGG | + | chr4_2:14799638-14799657 | Msa0590940:intron | 10.0% |
| !!! | TTGAGTATATTTTTTTTTTT+GGG | + | chr4_2:14799639-14799658 | Msa0590940:intron | 10.0% |
| !! | CTAATGTAAATAATAAAAAA+AGG | - | chr4_2:14801102-14801121 | None:intergenic | 10.0% |
| !!! | TGTAAATTAACTTTTTTTTT+TGG | + | chr4_2:14801146-14801165 | Msa0590940:intron | 10.0% |
| !!! | GTAAATTAACTTTTTTTTTT+GGG | + | chr4_2:14801147-14801166 | Msa0590940:intron | 10.0% |
| !!! | GTAAATTAACATTTTTTTTT+AGG | - | chr4_2:14802080-14802099 | None:intergenic | 10.0% |
| !! | CTAATCTAAATAATAAAAAA+AGG | + | chr4_2:14802125-14802144 | Msa0590940:intron | 10.0% |
| !!! | TTAAGTTCTAATTTTTTTAT+GGG | - | chr4_2:14802160-14802179 | None:intergenic | 10.0% |
| !!! | TTTAAGTTCTAATTTTTTTA+TGG | - | chr4_2:14802161-14802180 | None:intergenic | 10.0% |
| !!! | TTTTTGTTGATTTATGTTAA+TGG | + | chr4_2:14799574-14799593 | Msa0590940:intron | 15.0% |
| !!! | TTTTGTTGATTTATGTTAAT+GGG | + | chr4_2:14799575-14799594 | Msa0590940:intron | 15.0% |
| !! | AAAAAAAATATACTCAATTC+AGG | - | chr4_2:14799636-14799655 | None:intergenic | 15.0% |
| !!! | TGAGTATATTTTTTTTTTTG+GGG | + | chr4_2:14799640-14799659 | Msa0590940:intron | 15.0% |
| !!! | GTTTTTTCATTATTTGTTTT+TGG | + | chr4_2:14799662-14799681 | Msa0590940:intron | 15.0% |
| !!! | TGTTTTTATTTGATTTGTTT+AGG | + | chr4_2:14799948-14799967 | Msa0590940:intron | 15.0% |
| !!! | TATAATAAAGATTTTGTTTG+CGG | + | chr4_2:14800146-14800165 | Msa0590940:intron | 15.0% |
| !! | TAATTCAAATGAATTGTATT+CGG | + | chr4_2:14800176-14800195 | Msa0590940:intron | 15.0% |
| !! | ATGTAAATAATAAAAAAAGG+AGG | - | chr4_2:14801099-14801118 | None:intergenic | 15.0% |
| !! | TGCTATTACAAAAAAAAAAA+AGG | - | chr4_2:14801189-14801208 | None:intergenic | 15.0% |
| !! | ATCTAAATAATAAAAAAAGG+AGG | + | chr4_2:14802128-14802147 | Msa0590940:intron | 15.0% |
| !!! | TAAGTTCTAATTTTTTTATG+GGG | - | chr4_2:14802159-14802178 | None:intergenic | 15.0% |
| !!! | TTTTATAAATTCCATTTAGT+TGG | - | chr4_2:14802350-14802369 | None:intergenic | 15.0% |
| !! | ATAAAAACAGATGAAAATAA+AGG | + | chr4_2:14802511-14802530 | Msa0590940:intron | 15.0% |
| !!! | ATTGAAAAACAGTAATTTTA+TGG | - | chr4_2:14802799-14802818 | None:intergenic | 15.0% |
| !!! | TTACTGATTAATGTTCTAAA+TGG | - | chr4_2:14799419-14799438 | None:intergenic | 20.0% |
| !!! | TTTTTGGTGATTTATTTTGT+TGG | + | chr4_2:14799500-14799519 | Msa0590940:intron | 20.0% |
| !!! | TTTTGGTGATTTATTTTGTT+GGG | + | chr4_2:14799501-14799520 | Msa0590940:intron | 20.0% |
| !! | TATGAATAATTGACAAAGAT+CGG | - | chr4_2:14800103-14800122 | None:intergenic | 20.0% |
| !! | ACAGACACAAAATTAAAATT+TGG | - | chr4_2:14800225-14800244 | None:intergenic | 20.0% |
| !! | TGGATAAAAAATTAGACTAT+TGG | - | chr4_2:14800907-14800926 | None:intergenic | 20.0% |
| !!! | AAAGTTTGTTTTCACTATTT+TGG | - | chr4_2:14800927-14800946 | None:intergenic | 20.0% |
| !!! | ACTTGCTATTACAAAAAAAA+AGG | + | chr4_2:14802012-14802031 | Msa0590940:intron | 20.0% |
| !!! | CTTGCTATTACAAAAAAAAA+GGG | + | chr4_2:14802013-14802032 | Msa0590940:intron | 20.0% |
| !! | ACAAAAAAAAAGGGATAAAA+AGG | + | chr4_2:14802022-14802041 | Msa0590940:intron | 20.0% |
| !! | AATTCTAACCCAAAAAAATT+TGG | + | chr4_2:14802048-14802067 | Msa0590940:intron | 20.0% |
| !! | CATATAAAATTGTAGCAAAA+GGG | + | chr4_2:14802404-14802423 | Msa0590940:intron | 20.0% |
| !!! | AAGTAATTTTCAGATGTTAT+TGG | + | chr4_2:14803135-14803154 | Msa0590940:intron | 20.0% |
| !! | TTAATGCTAATCAAATTCTT+TGG | + | chr4_2:14803196-14803215 | Msa0590940:intron | 20.0% |
| !! | ATTATTAGAAATGACAATCA+AGG | + | chr4_2:14803274-14803293 | Msa0590940:three_prime_UTR | 20.0% |
| !! | TTATTAGAAATGACAATCAA+GGG | + | chr4_2:14803275-14803294 | Msa0590940:three_prime_UTR | 20.0% |
| !!! | TGGAGTGTTATAATTATTTA+AGG | + | chr4_2:14803391-14803410 | Msa0590940:three_prime_UTR | 20.0% |
| !!! | GTTTTTTAAACTATGATTCT+TGG | + | chr4_2:14803420-14803439 | Msa0590940:intron | 20.0% |
| !! | ATTTGACATCAAAATTTCAT+GGG | + | chr4_2:14803462-14803481 | Msa0590940:three_prime_UTR | 20.0% |
| ! | ACATAAACGAAAATTCAGAA+AGG | - | chr4_2:14799446-14799465 | None:intergenic | 25.0% |
| !! | GCAATTGATTTCAATTGAAA+AGG | + | chr4_2:14799544-14799563 | Msa0590940:intron | 25.0% |
| ! | TTTGTAGTGATTTATGTTGT+TGG | + | chr4_2:14799711-14799730 | Msa0590940:intron | 25.0% |
| ! | TTGTAGTGATTTATGTTGTT+GGG | + | chr4_2:14799712-14799731 | Msa0590940:intron | 25.0% |
| ! | GTAGAACTAGAACAAAAAAA+TGG | + | chr4_2:14799777-14799796 | Msa0590940:intron | 25.0% |
| !!! | TATGTTTTTTGGTTCTTCAT+AGG | + | chr4_2:14799888-14799907 | Msa0590940:intron | 25.0% |
| !!! | ACTCATAATTTGTTGAAATC+TGG | + | chr4_2:14800478-14800497 | Msa0590940:intron | 25.0% |
| !!! | ATAATTTGTTGAAATCTGGT+TGG | + | chr4_2:14800482-14800501 | Msa0590940:intron | 25.0% |
| ! | AATAGACGAAAAGATAAGAA+CGG | - | chr4_2:14800684-14800703 | None:intergenic | 25.0% |
| ! | TTGTTGTATACTATTCTTCA+AGG | + | chr4_2:14800787-14800806 | Msa0590940:intron | 25.0% |
| ! | TGTTGTATACTATTCTTCAA+GGG | + | chr4_2:14800788-14800807 | Msa0590940:intron | 25.0% |
| ! | ATAATAAAAAAAGGAGGATG+AGG | - | chr4_2:14801093-14801112 | None:intergenic | 25.0% |
| !! | TTTTTGTAATAGCAAGTACA+TGG | + | chr4_2:14801195-14801214 | Msa0590940:intron | 25.0% |
| ! | AAACTTGCACAATTTCAATA+AGG | + | chr4_2:14801429-14801448 | Msa0590940:intron | 25.0% |
| !! | TTTTGTAATAGCAAGTACAT+GGG | - | chr4_2:14801196-14801215 | None:intergenic | 25.0% |
| !! | TTTTTGTAATAGCAAGTACA+TGG | - | chr4_2:14801195-14801214 | None:intergenic | 25.0% |
| !!! | GGATGATACCAAATTTTTTT+GGG | - | chr4_2:14802059-14802078 | None:intergenic | 25.0% |
| !!! | AGGATGATACCAAATTTTTT+TGG | - | chr4_2:14802060-14802079 | None:intergenic | 25.0% |
| !! | CCTTTTGCTACAATTTTATA+TGG | - | chr4_2:14802406-14802425 | None:intergenic | 25.0% |
| ! | CCATATAAAATTGTAGCAAA+AGG | + | chr4_2:14802403-14802422 | Msa0590940:intron | 25.0% |
| ! | TTGATTTCCATTGAAAAACT+CGG | + | chr4_2:14802437-14802456 | Msa0590940:intron | 25.0% |
| ! | ATGAAAATAAAGGAGAAAGA+AGG | + | chr4_2:14802521-14802540 | Msa0590940:intron | 25.0% |
| ! | TCAAATTATGCTTACTATTG+TGG | + | chr4_2:14803008-14803027 | Msa0590940:CDS | 25.0% |
| !! | TTACTTACAGATTTTGTTGA+AGG | - | chr4_2:14803121-14803140 | None:intergenic | 25.0% |
| ! | AAAAACAAAAATCTCATCTC+AGG | - | chr4_2:14803306-14803325 | None:intergenic | 25.0% |
| !!! | GAGATGAGATTTTTGTTTTT+TGG | + | chr4_2:14803306-14803325 | Msa0590940:three_prime_UTR | 25.0% |
| ! | AATTATAACACTCCAGATAA+TGG | - | chr4_2:14803386-14803405 | None:intergenic | 25.0% |
| ! | CATTTGACATCAAAATTTCA+TGG | + | chr4_2:14803461-14803480 | Msa0590940:three_prime_UTR | 25.0% |
| ! | TTTGACATCAAAATTTCATG+GGG | + | chr4_2:14803463-14803482 | Msa0590940:three_prime_UTR | 25.0% |
| !! | AATGTTCTAAATGGACTACT+CGG | - | chr4_2:14799410-14799429 | None:intergenic | 30.0% |
| AGTCACATTCTATAACCTTA+AGG | + | chr4_2:14799801-14799820 | Msa0590940:CDS | 30.0% | |
| ! | TATTCATATGATGGAACTGA+TGG | - | chr4_2:14800016-14800035 | None:intergenic | 30.0% |
| TCAGTTCCATCATATGAATA+TGG | + | chr4_2:14800016-14800035 | Msa0590940:CDS | 30.0% | |
| CAGTTCCATCATATGAATAT+GGG | + | chr4_2:14800017-14800036 | Msa0590940:CDS | 30.0% | |
| ACATTCCCATATTCATATGA+TGG | - | chr4_2:14800025-14800044 | None:intergenic | 30.0% | |
| TAATTGACAAAGATCGGAAT+GGG | - | chr4_2:14800097-14800116 | None:intergenic | 30.0% | |
| ATAATTGACAAAGATCGGAA+TGG | - | chr4_2:14800098-14800117 | None:intergenic | 30.0% | |
| ! | CTTACTTTCTTTCTTTTTGC+CGG | - | chr4_2:14800441-14800460 | None:intergenic | 30.0% |
| !! | ACAAGTTTGTTTTCCCTATT+GGG | + | chr4_2:14800849-14800868 | Msa0590940:intron | 30.0% |
| AGAAGAAAGAAACACAAAGA+GGG | - | chr4_2:14800995-14801014 | None:intergenic | 30.0% | |
| !! | CCACTGAATTTTAATGACTA+GGG | - | chr4_2:14801286-14801305 | None:intergenic | 30.0% |
| !! | ACCACTGAATTTTAATGACT+AGG | - | chr4_2:14801287-14801306 | None:intergenic | 30.0% |
| !!! | GGTTTTGATTGGATCATTTA+TGG | - | chr4_2:14801356-14801375 | None:intergenic | 30.0% |
| !!! | CCTTTTGAAGTTAACCATTT+CGG | - | chr4_2:14801798-14801817 | None:intergenic | 30.0% |
| GTTAACTTCAAAAGGAGTTT+GGG | + | chr4_2:14801406-14801425 | Msa0590940:intron | 30.0% | |
| !! | AGCAAATCCTATTTCTTTTC+TGG | - | chr4_2:14801479-14801498 | None:intergenic | 30.0% |
| AAACTTGCACAATTTCAACA+AGG | - | chr4_2:14801770-14801789 | None:intergenic | 30.0% | |
| GTTAACTTCAAAAGGAGTTT+GGG | - | chr4_2:14801406-14801425 | None:intergenic | 30.0% | |
| !!! | TCCTTTTGAAGTTAACCATT+TGG | + | chr4_2:14801797-14801816 | Msa0590940:intron | 30.0% |
| !!! | CCTTTTGAAGTTAACCATTT+GGG | + | chr4_2:14801798-14801817 | Msa0590940:intron | 30.0% |
| ! | TTTTGATCTGTCTCAAAGAA+TGG | + | chr4_2:14801944-14801963 | Msa0590940:intron | 30.0% |
| TTTGATCTGTCTCAAAGAAT+GGG | + | chr4_2:14801945-14801964 | Msa0590940:intron | 30.0% | |
| CACGTAAAAATGTTGTAGAA+GGG | + | chr4_2:14802305-14802324 | Msa0590940:intron | 30.0% | |
| !! | TTCAGATGTTATTGGTTTGT+TGG | + | chr4_2:14803143-14803162 | Msa0590940:intron | 30.0% |
| AGAATTTGGATTGAGGAAGA+AGG | - | chr4_2:14799382-14799401 | None:intergenic | 35.0% | |
| GGTTTAGAGAATTTGGATTG+AGG | - | chr4_2:14799389-14799408 | None:intergenic | 35.0% | |
| ACTACTCGGTTTAGAGAATT+TGG | - | chr4_2:14799396-14799415 | None:intergenic | 35.0% | |
| TATAACCTTAAGGCTGAATC+TGG | + | chr4_2:14799811-14799830 | Msa0590940:CDS | 35.0% | |
| !!! | ACTGGGTAGGTTATGTTTTT+TGG | + | chr4_2:14799877-14799896 | Msa0590940:intron | 35.0% |
| !! | TAATGTCATCCTTTGAAGCT+TGG | - | chr4_2:14799976-14799995 | None:intergenic | 35.0% |
| ATGAATATGGGAATGTTGCT+AGG | + | chr4_2:14800029-14800048 | Msa0590940:CDS | 35.0% | |
| !! | GATGACGATGTTGATTTGTT+TGG | + | chr4_2:14800356-14800375 | Msa0590940:CDS | 35.0% |
| TCTGGTTGGACATCAATTTA+TGG | + | chr4_2:14800496-14800515 | Msa0590940:intron | 35.0% | |
| !!! | TTTTCTGCTGATTCCATTCT+AGG | + | chr4_2:14800525-14800544 | Msa0590940:intron | 35.0% |
| ! | AGATGATTTTCCACCTAGAA+TGG | - | chr4_2:14800541-14800560 | None:intergenic | 35.0% |
| TGGAAAATCATCTGTACTGT+TGG | + | chr4_2:14800548-14800567 | Msa0590940:CDS | 35.0% | |
| ! | CTGGTGCACAAATAAGATTT+TGG | + | chr4_2:14800816-14800835 | Msa0590940:intron | 35.0% |
| !! | CACAAGTTTGTTTTCCCTAT+TGG | + | chr4_2:14800848-14800867 | Msa0590940:intron | 35.0% |
| TGGATCAAGTGAGATATGAT+GGG | - | chr4_2:14800887-14800906 | None:intergenic | 35.0% | |
| TTGGATCAAGTGAGATATGA+TGG | - | chr4_2:14800888-14800907 | None:intergenic | 35.0% | |
| GAGAAGAAAGAAACACAAAG+AGG | - | chr4_2:14800996-14801015 | None:intergenic | 35.0% | |
| AGAAGAGTTTATCATGTTGC+TGG | - | chr4_2:14801035-14801054 | None:intergenic | 35.0% | |
| GAGAGATTTGTGTGTGAATA+GGG | - | chr4_2:14802639-14802658 | None:intergenic | 35.0% | |
| TGAGAGATTTGTGTGTGAAT+AGG | - | chr4_2:14802638-14802657 | None:intergenic | 35.0% | |
| AAAAAAAGGAGGATGAGGTT+GGG | - | chr4_2:14801088-14801107 | None:intergenic | 35.0% | |
| TAAAAAAAGGAGGATGAGGT+TGG | - | chr4_2:14801089-14801108 | None:intergenic | 35.0% | |
| TAATAGCAAGTACATGGACT+GGG | + | chr4_2:14801201-14801220 | Msa0590940:intron | 35.0% | |
| TTTGATCTGTCTCAGAGAAT+GGG | - | chr4_2:14801259-14801278 | None:intergenic | 35.0% | |
| ! | TTTTGATCTGTCTCAGAGAA+TGG | - | chr4_2:14801260-14801279 | None:intergenic | 35.0% |
| CCCTAGTCATTAAAATTCAG+TGG | + | chr4_2:14801283-14801302 | Msa0590940:intron | 35.0% | |
| CCGAAATGGTTAACTTCAAA+AGG | + | chr4_2:14801398-14801417 | Msa0590940:intron | 35.0% | |
| GGTTAACTTCAAAAGGAGTT+TGG | + | chr4_2:14801405-14801424 | Msa0590940:intron | 35.0% | |
| !!! | TTCTTTTCTGGTTGCCTTAT+AGG | - | chr4_2:14801467-14801486 | None:intergenic | 35.0% |
| AAGGCAACCAGAAAAGAAAT+AGG | + | chr4_2:14801469-14801488 | Msa0590940:intron | 35.0% | |
| !! | AGCAGATCCTATTTCTTTTC+TGG | + | chr4_2:14801720-14801739 | Msa0590940:intron | 35.0% |
| GGTTAACTTCAAAAGGAGTT+TGG | - | chr4_2:14801405-14801424 | None:intergenic | 35.0% | |
| CCCAAATGGTTAACTTCAAA+AGG | - | chr4_2:14801801-14801820 | None:intergenic | 35.0% | |
| AAGAGATGAGATAGGATATG+AGG | + | chr4_2:14801874-14801893 | Msa0590940:intron | 35.0% | |
| !!! | ACCGCTGATTTTAAATGACT+AGG | + | chr4_2:14801916-14801935 | Msa0590940:intron | 35.0% |
| ! | CCCTAGTCATTTAAAATCAG+CGG | - | chr4_2:14801920-14801939 | None:intergenic | 35.0% |
| !!! | CCGCTGATTTTAAATGACTA+GGG | + | chr4_2:14801917-14801936 | Msa0590940:intron | 35.0% |
| ! | ACATTTTTACGTGGTCGTTT+TGG | - | chr4_2:14802298-14802317 | None:intergenic | 35.0% |
| ! | CCTTCTACAACATTTTTACG+TGG | - | chr4_2:14802307-14802326 | None:intergenic | 35.0% |
| CCACGTAAAAATGTTGTAGA+AGG | + | chr4_2:14802304-14802323 | Msa0590940:intron | 35.0% | |
| !! | ACTAGATCCGAGTTTTTCAA+TGG | - | chr4_2:14802447-14802466 | None:intergenic | 35.0% |
| AAGAAGGATAGATCCAAATC+AGG | + | chr4_2:14802537-14802556 | Msa0590940:intron | 35.0% | |
| CTATCGGAAAACAACCATTA+TGG | - | chr4_2:14802576-14802595 | None:intergenic | 35.0% | |
| !! | CATAATGGTTGTTTTCCGAT+AGG | + | chr4_2:14802574-14802593 | Msa0590940:intron | 35.0% |
| !! | GTTGTTTGATTTGTGACATG+AGG | + | chr4_2:14802604-14802623 | Msa0590940:intron | 35.0% |
| !! | TTTGATTTGTGACATGAGGT+TGG | + | chr4_2:14802608-14802627 | Msa0590940:intron | 35.0% |
| !! | TTGATTTGTGACATGAGGTT+GGG | + | chr4_2:14802609-14802628 | Msa0590940:intron | 35.0% |
| TGAGAGATTTGTGTGTGAAT+AGG | + | chr4_2:14802638-14802657 | Msa0590940:intron | 35.0% | |
| GAGAGATTTGTGTGTGAATA+GGG | + | chr4_2:14802639-14802658 | Msa0590940:intron | 35.0% | |
| ATAGGGAGAAGAGTTTATCA+TGG | + | chr4_2:14802656-14802675 | Msa0590940:intron | 35.0% | |
| GAAGAGTTTATCATGGTTGT+TGG | + | chr4_2:14802663-14802682 | Msa0590940:intron | 35.0% | |
| AGAAGAAAGAAACACAGAGA+GGG | + | chr4_2:14802715-14802734 | Msa0590940:intron | 35.0% | |
| TGCAGAATTTGCAATTCGTA+TGG | + | chr4_2:14803219-14803238 | Msa0590940:intron | 35.0% | |
| AATTTGCAATTCGTATGGCA+TGG | + | chr4_2:14803224-14803243 | Msa0590940:exon | 35.0% | |
| AAATGACAGCAACAACAAGT+AGG | - | chr4_2:14803334-14803353 | None:intergenic | 35.0% | |
| GTGATTTCATCTCCATTATC+TGG | + | chr4_2:14803371-14803390 | Msa0590940:three_prime_UTR | 35.0% | |
| GTTTAGGTACCAAGCTTCAA+AGG | + | chr4_2:14799964-14799983 | Msa0590940:intron | 40.0% | |
| AATATGGGAATGTTGCTAGG+TGG | + | chr4_2:14800032-14800051 | Msa0590940:CDS | 40.0% | |
| TGTGTCTGTAGTTGTGTTTC+TGG | + | chr4_2:14800236-14800255 | Msa0590940:intron | 40.0% | |
| !! | TGTAGTTGTGTTTCTGGTGA+GGG | + | chr4_2:14800242-14800261 | Msa0590940:intron | 40.0% |
| ! | TTTGTTTGGTGAAGAGACTG+AGG | + | chr4_2:14800370-14800389 | Msa0590940:CDS | 40.0% |
| TTCTTCGAGCTTCTTCATGT+CGG | - | chr4_2:14800598-14800617 | None:intergenic | 40.0% | |
| TGAGATCTGTTCAGTTGGAA+GGG | + | chr4_2:14800622-14800641 | Msa0590940:CDS | 40.0% | |
| GGCTTGAGATTAACCCAATA+GGG | - | chr4_2:14800865-14800884 | None:intergenic | 40.0% | |
| GGATCAAGTGAGATATGATG+GGG | - | chr4_2:14800886-14800905 | None:intergenic | 40.0% | |
| GAAAGAAACACAAAGAGGGA+GGG | - | chr4_2:14800991-14801010 | None:intergenic | 40.0% | |
| AGAAAGAAACACAAAGAGGG+AGG | - | chr4_2:14800992-14801011 | None:intergenic | 40.0% | |
| AGAGTTTATCATGTTGCTGG+AGG | - | chr4_2:14801032-14801051 | None:intergenic | 40.0% | |
| GTAATAGCAAGTACATGGAC+TGG | + | chr4_2:14801200-14801219 | Msa0590940:intron | 40.0% | |
| ! | AAGAGATGAGAGAGAGTATG+AGG | - | chr4_2:14801329-14801348 | None:intergenic | 40.0% |
| !! | GAGAGGATTAGGGTTTTGAT+TGG | - | chr4_2:14801367-14801386 | None:intergenic | 40.0% |
| CGAAAGAGATGAGAGGATTA+GGG | - | chr4_2:14801377-14801396 | None:intergenic | 40.0% | |
| ACGAAAGAGATGAGAGGATT+AGG | - | chr4_2:14801378-14801397 | None:intergenic | 40.0% | |
| ! | GCATTGATGCACAAGGATTT+GGG | + | chr4_2:14801551-14801570 | Msa0590940:intron | 40.0% |
| CATTGATGCACAAGGATTTG+GGG | + | chr4_2:14801552-14801571 | Msa0590940:intron | 40.0% | |
| CATTGATGCACAAGGATTTG+GGG | - | chr4_2:14801552-14801571 | None:intergenic | 40.0% | |
| ! | GCATTGATGCACAAGGATTT+GGG | - | chr4_2:14801551-14801570 | None:intergenic | 40.0% |
| AAGGCAGCCAGAAAAGAAAT+AGG | - | chr4_2:14801730-14801749 | None:intergenic | 40.0% | |
| !!! | TTCTTTTCTGGCTGCCTTAT+AGG | + | chr4_2:14801732-14801751 | Msa0590940:intron | 40.0% |
| AAGAGATGAGAGAGAGGATT+AGG | + | chr4_2:14801825-14801844 | Msa0590940:intron | 40.0% | |
| AGAGATGAGAGAGAGGATTA+GGG | + | chr4_2:14801826-14801845 | Msa0590940:intron | 40.0% | |
| GGTTTCGATTGGATCAGTTA+TGG | + | chr4_2:14801847-14801866 | Msa0590940:intron | 40.0% | |
| ATGGACGAAAGAGATGAGAT+AGG | + | chr4_2:14801866-14801885 | Msa0590940:intron | 40.0% | |
| ACAGATCTGTGCCAACTAAA+TGG | + | chr4_2:14802336-14802355 | Msa0590940:intron | 40.0% | |
| AGAGACACACTTTCCTGATT+TGG | - | chr4_2:14802553-14802572 | None:intergenic | 40.0% | |
| ! | GAAAGTGTGTCTCTCCATAA+TGG | + | chr4_2:14802559-14802578 | Msa0590940:intron | 40.0% |
| CAAACAACACCACAACCTAT+CGG | - | chr4_2:14802592-14802611 | None:intergenic | 40.0% | |
| GAGTTTATCATGGTTGTTGG+AGG | + | chr4_2:14802666-14802685 | Msa0590940:intron | 40.0% | |
| !!! | GTTGTTGGAGGTTTTGTTGT+TGG | + | chr4_2:14802678-14802697 | Msa0590940:intron | 40.0% |
| GAGAAGAAAGAAACACAGAG+AGG | + | chr4_2:14802714-14802733 | Msa0590940:intron | 40.0% | |
| TCTCTGCAATACGAAGACTA+AGG | - | chr4_2:14802860-14802879 | None:intergenic | 40.0% | |
| ! | TCTTGTTTCCGTCGACAATA+TGG | + | chr4_2:14803035-14803054 | Msa0590940:CDS | 40.0% |
| ATCCTCAACCATATTGTCGA+CGG | - | chr4_2:14803046-14803065 | None:intergenic | 40.0% | |
| !! | TTCTTGGTTTGCACACTCTT+TGG | + | chr4_2:14803436-14803455 | Msa0590940:intron | 40.0% |
| AGGTTTACCTGTGTTGAGAG+AGG | - | chr4_2:14799362-14799381 | None:intergenic | 45.0% | |
| TCAAGCCAGATTCAGCCTTA+AGG | - | chr4_2:14799819-14799838 | None:intergenic | 45.0% | |
| TGATGTAACTGCGTGTGAGA+AGG | - | chr4_2:14799858-14799877 | None:intergenic | 45.0% | |
| TCACACGCAGTTACATCACT+GGG | + | chr4_2:14799860-14799879 | Msa0590940:CDS | 45.0% | |
| !! | CTGTAGTTGTGTTTCTGGTG+AGG | + | chr4_2:14800241-14800260 | Msa0590940:intron | 45.0% |
| AGCCACAAGAGAAGATTCCA+CGG | - | chr4_2:14800279-14800298 | None:intergenic | 45.0% | |
| TCCTCCAGTTTCTGACACAA+AGG | + | chr4_2:14800316-14800335 | Msa0590940:CDS | 45.0% | |
| AGAGACTGAGGAAGAGAAGA+AGG | + | chr4_2:14800382-14800401 | Msa0590940:CDS | 45.0% | |
| !! | TCTGCTGATTCCATTCTAGG+TGG | + | chr4_2:14800528-14800547 | Msa0590940:intron | 45.0% |
| TACTGTTGGATGTGAAGCCA+TGG | + | chr4_2:14800562-14800581 | Msa0590940:CDS | 45.0% | |
| ACTGTTGGATGTGAAGCCAT+GGG | + | chr4_2:14800563-14800582 | Msa0590940:CDS | 45.0% | |
| !! | ATGTCGGTTTCATCATCCCA+TGG | - | chr4_2:14800582-14800601 | None:intergenic | 45.0% |
| AGCAGTGAGATCTGTTCAGT+TGG | + | chr4_2:14800617-14800636 | Msa0590940:CDS | 45.0% | |
| GTGAGATCTGTTCAGTTGGA+AGG | + | chr4_2:14800621-14800640 | Msa0590940:CDS | 45.0% | |
| TTCAGTTGGAAGGGTTGTTC+TGG | + | chr4_2:14800631-14800650 | Msa0590940:CDS | 45.0% | |
| TCAGTTGGAAGGGTTGTTCT+GGG | + | chr4_2:14800632-14800651 | Msa0590940:CDS | 45.0% | |
| ! | CTATTCTTCAAGGGCATGTC+TGG | + | chr4_2:14800797-14800816 | Msa0590940:intron | 45.0% |
| GGGCTTGAGATTAACCCAAT+AGG | - | chr4_2:14800866-14800885 | None:intergenic | 45.0% | |
| GACTGGGTCATAGTAGAATC+TGG | + | chr4_2:14801217-14801236 | Msa0590940:intron | 45.0% | |
| ! | AATCTGGAGTGTTCAAGACC+CGG | + | chr4_2:14801233-14801252 | Msa0590940:intron | 45.0% |
| TTTCGGACGAAAGAGATGAG+AGG | - | chr4_2:14801384-14801403 | None:intergenic | 45.0% | |
| CTCATCTCTTTCGTCCGAAA+TGG | + | chr4_2:14801384-14801403 | Msa0590940:intron | 45.0% | |
| !! | GGCATTGATGCACAAGGATT+TGG | + | chr4_2:14801550-14801569 | Msa0590940:intron | 45.0% |
| AGATGCAGTTGGGTATGCAA+CGG | + | chr4_2:14801587-14801606 | Msa0590940:intron | 45.0% | |
| TTTGCAACACCAGATGCAGT+TGG | - | chr4_2:14801623-14801642 | None:intergenic | 45.0% | |
| !! | GGCATTGATGCACAAGGATT+TGG | - | chr4_2:14801550-14801569 | None:intergenic | 45.0% |
| TCTCACATCACGCTTAGCAT+TGG | + | chr4_2:14801684-14801703 | Msa0590940:intron | 45.0% | |
| CTCATCTCTTTCGTCCCAAA+TGG | - | chr4_2:14801815-14801834 | None:intergenic | 45.0% | |
| GAGAGGATTAGGGTTTCGAT+TGG | + | chr4_2:14801836-14801855 | Msa0590940:intron | 45.0% | |
| ATCTGTCTCAAAGAATGGGC+CGG | + | chr4_2:14801949-14801968 | Msa0590940:intron | 45.0% | |
| TAATAGCAAGTACATGGGCC+GGG | - | chr4_2:14802003-14802022 | None:intergenic | 45.0% | |
| GTAATAGCAAGTACATGGGC+CGG | - | chr4_2:14802004-14802023 | None:intergenic | 45.0% | |
| !! | GGTTGTTTTCCGATAGGTTG+TGG | + | chr4_2:14802580-14802599 | Msa0590940:intron | 45.0% |
| AGAAAGAAACACAGAGAGGG+AGG | + | chr4_2:14802718-14802737 | Msa0590940:intron | 45.0% | |
| GAAAGAAACACAGAGAGGGA+GGG | + | chr4_2:14802719-14802738 | Msa0590940:intron | 45.0% | |
| AAACTTGTCCCTGTTGGGTA+CGG | + | chr4_2:14802973-14802992 | Msa0590940:CDS | 45.0% | |
| TCTTGATACCGTACCCAACA+GGG | - | chr4_2:14802984-14803003 | None:intergenic | 45.0% | |
| TTCTTGATACCGTACCCAAC+AGG | - | chr4_2:14802985-14803004 | None:intergenic | 45.0% | |
| TTCCGTCGACAATATGGTTG+AGG | + | chr4_2:14803041-14803060 | Msa0590940:CDS | 45.0% | |
| CTCTGGACATACTCGTTGAT+GGG | - | chr4_2:14803084-14803103 | None:intergenic | 45.0% | |
| ACTCTGGACATACTCGTTGA+TGG | - | chr4_2:14803085-14803104 | None:intergenic | 45.0% | |
| TGTCCAGAGTTGTGACATTG+TGG | + | chr4_2:14803095-14803114 | Msa0590940:CDS | 45.0% | |
| TGGCATGGAGATCATTGTAG+TGG | + | chr4_2:14803239-14803258 | Msa0590940:three_prime_UTR | 45.0% | |
| GGCATGGAGATCATTGTAGT+GGG | + | chr4_2:14803240-14803259 | Msa0590940:three_prime_UTR | 45.0% | |
| TGGCAAAGTTTGCATAGCCA+GGG | - | chr4_2:14803503-14803522 | None:intergenic | 45.0% | |
| GTTGAGAGAGGCGAGATTGA+AGG | - | chr4_2:14799350-14799369 | None:intergenic | 50.0% | |
| AATCTCGCCTCTCTCAACAC+AGG | + | chr4_2:14799352-14799371 | Msa0590940:five_prime_UTR | 50.0% | |
| CTCACACGCAGTTACATCAC+TGG | + | chr4_2:14799859-14799878 | Msa0590940:CDS | 50.0% | |
| ACGCAGTTACATCACTGGGT+AGG | + | chr4_2:14799864-14799883 | Msa0590940:intron | 50.0% | |
| !! | TGTGTTTCTGGTGAGGGATC+TGG | + | chr4_2:14800248-14800267 | Msa0590940:CDS | 50.0% |
| CACCGTGGAATCTTCTCTTG+TGG | + | chr4_2:14800274-14800293 | Msa0590940:CDS | 50.0% | |
| TGTGTCAGAAACTGGAGGAG+TGG | - | chr4_2:14800315-14800334 | None:intergenic | 50.0% | |
| GCCTTTGTGTCAGAAACTGG+AGG | - | chr4_2:14800320-14800339 | None:intergenic | 50.0% | |
| GCTGCCTTTGTGTCAGAAAC+TGG | - | chr4_2:14800323-14800342 | None:intergenic | 50.0% | |
| TTCTGACACAAAGGCAGCTG+AGG | + | chr4_2:14800325-14800344 | Msa0590940:CDS | 50.0% | |
| AGAAGAAGGCAGCTGAGGAA+CGG | + | chr4_2:14800396-14800415 | Msa0590940:CDS | 50.0% | |
| ! | CTTTTTGCCGGATGCCTTCA+CGG | - | chr4_2:14800429-14800448 | None:intergenic | 50.0% |
| CAGTTGGAAGGGTTGTTCTG+GGG | + | chr4_2:14800633-14800652 | Msa0590940:CDS | 50.0% | |
| ATCTGTCTCAGAGAATGGGC+CGG | - | chr4_2:14801255-14801274 | None:intergenic | 50.0% | |
| ! | GGAGCTTGCTTCTGCCTATA+AGG | + | chr4_2:14801450-14801469 | Msa0590940:intron | 50.0% |
| TCTCACAGCACGCTTAGCAT+TGG | - | chr4_2:14801515-14801534 | None:intergenic | 50.0% | |
| GTGAGACATGCAAAGGATGC+TGG | + | chr4_2:14801529-14801548 | Msa0590940:intron | 50.0% | |
| !! | GATGCTGGCATTGATGCACA+AGG | + | chr4_2:14801544-14801563 | Msa0590940:intron | 50.0% |
| TTTGCAGCACCAGATGCAGT+TGG | + | chr4_2:14801576-14801595 | Msa0590940:intron | 50.0% | |
| TTGCAGCACCAGATGCAGTT+GGG | + | chr4_2:14801577-14801596 | Msa0590940:intron | 50.0% | |
| GTTGCATACCCAACTGCATC+TGG | - | chr4_2:14801588-14801607 | None:intergenic | 50.0% | |
| AACACCAGATGCAGTTGGCA+TGG | - | chr4_2:14801618-14801637 | None:intergenic | 50.0% | |
| !! | GATGCTGGCATTGATGCACA+AGG | - | chr4_2:14801544-14801563 | None:intergenic | 50.0% |
| GTGAGACATGCAAAGGATGC+TGG | - | chr4_2:14801529-14801548 | None:intergenic | 50.0% | |
| GCGTGATGTGAGACATGCAA+AGG | - | chr4_2:14801677-14801696 | None:intergenic | 50.0% | |
| ! | GGAGCTTGCTTCTGCCTATA+AGG | - | chr4_2:14801450-14801469 | None:intergenic | 50.0% |
| GGACGAAAGAGATGAGAGAG+AGG | + | chr4_2:14801819-14801838 | Msa0590940:intron | 50.0% | |
| TCTGTCTCAAAGAATGGGCC+GGG | + | chr4_2:14801950-14801969 | Msa0590940:intron | 50.0% | |
| ! | AATCCGGAGTGTTCAAGACC+CGG | - | chr4_2:14801971-14801990 | None:intergenic | 50.0% |
| CTCCGGATTCTACTATGACC+CGG | + | chr4_2:14801982-14802001 | Msa0590940:intron | 50.0% | |
| ! | CACAAGTGAGACGAGTGTTG+TGG | - | chr4_2:14802774-14802793 | None:intergenic | 50.0% |
| ACAGCCAAACTTGTCCCTGT+TGG | + | chr4_2:14802967-14802986 | Msa0590940:intron | 50.0% | |
| CAGCCAAACTTGTCCCTGTT+GGG | + | chr4_2:14802968-14802987 | Msa0590940:intron | 50.0% | |
| GTACCCAACAGGGACAAGTT+TGG | - | chr4_2:14802974-14802993 | None:intergenic | 50.0% | |
| AGGCCACAATGTCACAACTC+TGG | - | chr4_2:14803101-14803120 | None:intergenic | 50.0% | |
| CTGGCAAAGTTTGCATAGCC+AGG | - | chr4_2:14803504-14803523 | None:intergenic | 50.0% | |
| GGAAGAGAAGAAGGCAGCTG+AGG | + | chr4_2:14800391-14800410 | Msa0590940:CDS | 55.0% | |
| GAAGAAGGCAGCTGAGGAAC+GGG | + | chr4_2:14800397-14800416 | Msa0590940:CDS | 55.0% | |
| TCTGTCTCAGAGAATGGGCC+GGG | - | chr4_2:14801254-14801273 | None:intergenic | 55.0% | |
| GCGTGCTGTGAGACATGCAA+AGG | + | chr4_2:14801522-14801541 | Msa0590940:intron | 55.0% | |
| CGTTCCATGCCAACTGCATC+TGG | + | chr4_2:14801611-14801630 | Msa0590940:intron | 55.0% | |
| GGCCGGGTCATAGTAGAATC+CGG | - | chr4_2:14801987-14802006 | None:intergenic | 55.0% | |
| ! | GGGTATCGTCTAACAGACCC+TGG | + | chr4_2:14803483-14803502 | Msa0590940:three_prime_UTR | 55.0% |
| !! | TGAGGGATCTGGTGTCACCG+TGG | + | chr4_2:14800259-14800278 | Msa0590940:CDS | 60.0% |
| ! | GTGAGACGAGTGTTGTGGCG+CGG | - | chr4_2:14802769-14802788 | None:intergenic | 60.0% |
| !! | GCAGCAGCCGTGAAGGCATC+CGG | + | chr4_2:14800419-14800438 | Msa0590940:CDS | 65.0% |
| GGGCCGGGTCTTGAACACTC+CGG | + | chr4_2:14801965-14801984 | Msa0590940:intron | 65.0% | |
| GGAACGGGCAGCAGCCGTGA+AGG | + | chr4_2:14800412-14800431 | Msa0590940:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 14799315 | 14803532 | 14799315 | ID=Msa0590940;Name=Msa0590940 |
| chr4_2 | mRNA | 14799315 | 14803532 | 14799315 | ID=Msa0590940-mRNA-1;Parent=Msa0590940;Name=Msa0590940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=74|0.85|0.87|1|0.42|0.25|8|283|227 |
| chr4_2 | exon | 14799315 | 14799373 | 14799315 | ID=Msa0590940-mRNA-1:exon:4257;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14799781 | 14799881 | 14799781 | ID=Msa0590940-mRNA-1:exon:4258;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14799970 | 14800086 | 14799970 | ID=Msa0590940-mRNA-1:exon:4259;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14800247 | 14800455 | 14800247 | ID=Msa0590940-mRNA-1:exon:4260;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14800547 | 14800654 | 14800547 | ID=Msa0590940-mRNA-1:exon:4261;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14802971 | 14803132 | 14802971 | ID=Msa0590940-mRNA-1:exon:4262;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14803224 | 14803425 | 14803224 | ID=Msa0590940-mRNA-1:exon:4263;Parent=Msa0590940-mRNA-1 |
| chr4_2 | exon | 14803450 | 14803532 | 14803450 | ID=Msa0590940-mRNA-1:exon:4264;Parent=Msa0590940-mRNA-1 |
| chr4_2 | five_prime_UTR | 14799315 | 14799373 | 14799315 | ID=Msa0590940-mRNA-1:five_prime_utr;Parent=Msa0590940-mRNA-1 |
| chr4_2 | five_prime_UTR | 14799781 | 14799795 | 14799781 | ID=Msa0590940-mRNA-1:five_prime_utr;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14799796 | 14799881 | 14799796 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14799970 | 14800086 | 14799970 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14800247 | 14800455 | 14800247 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14800547 | 14800654 | 14800547 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14802971 | 14803132 | 14802971 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | CDS | 14803224 | 14803225 | 14803224 | ID=Msa0590940-mRNA-1:cds;Parent=Msa0590940-mRNA-1 |
| chr4_2 | three_prime_UTR | 14803226 | 14803425 | 14803226 | ID=Msa0590940-mRNA-1:three_prime_utr;Parent=Msa0590940-mRNA-1 |
| chr4_2 | three_prime_UTR | 14803450 | 14803532 | 14803450 | ID=Msa0590940-mRNA-1:three_prime_utr;Parent=Msa0590940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
