Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025120 | sp|Q9LZR0|ATB51_ARATH | 58.571 | 140 | 57 | 1 | 11 | 150 | 56 | 194 | 4.33e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0025120 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025120 | Msa0751890 | 0.810916 | 9.084902e-51 | -8.615850e-47 |
| Msa0025120 | Msa1201160 | 0.808966 | 2.388833e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025120 | MtrunA17_Chr7g0265521 | 52.869 | 244 | 64 | 9 | 1 | 205 | 1 | 232 | 1.33e-70 | 214 |
| Msa0025120 | MtrunA17_Chr1g0179591 | 68.939 | 132 | 36 | 1 | 74 | 205 | 3 | 129 | 1.99e-63 | 192 |
| Msa0025120 | MtrunA17_Chr1g0179581 | 100.000 | 85 | 0 | 0 | 30 | 114 | 26 | 110 | 8.67e-55 | 170 |
| Msa0025120 | MtrunA17_Chr6g0450991 | 49.242 | 132 | 58 | 2 | 1 | 125 | 38 | 167 | 1.68e-30 | 113 |
| Msa0025120 | MtrunA17_Chr4g0060031 | 53.211 | 109 | 44 | 1 | 31 | 132 | 94 | 202 | 4.21e-29 | 110 |
| Msa0025120 | MtrunA17_Chr8g0362151 | 55.789 | 95 | 35 | 1 | 31 | 118 | 76 | 170 | 6.25e-28 | 106 |
| Msa0025120 | MtrunA17_Chr6g0453021 | 52.212 | 113 | 52 | 1 | 10 | 122 | 76 | 186 | 7.94e-28 | 106 |
| Msa0025120 | MtrunA17_Chr3g0123691 | 38.636 | 176 | 86 | 5 | 29 | 193 | 57 | 221 | 9.74e-28 | 106 |
| Msa0025120 | MtrunA17_Chr5g0415941 | 52.137 | 117 | 44 | 3 | 23 | 127 | 77 | 193 | 1.90e-27 | 105 |
| Msa0025120 | MtrunA17_Chr5g0416391 | 56.180 | 89 | 39 | 0 | 31 | 119 | 76 | 164 | 1.16e-26 | 103 |
| Msa0025120 | MtrunA17_Chr8g0381741 | 41.844 | 141 | 72 | 3 | 31 | 161 | 53 | 193 | 1.75e-26 | 103 |
| Msa0025120 | MtrunA17_Chr3g0127511 | 49.038 | 104 | 45 | 2 | 34 | 130 | 40 | 142 | 1.63e-25 | 99.4 |
| Msa0025120 | MtrunA17_Chr8g0362751 | 53.608 | 97 | 38 | 1 | 32 | 121 | 89 | 185 | 1.69e-25 | 100 |
| Msa0025120 | MtrunA17_Chr3g0119291 | 41.667 | 156 | 72 | 3 | 31 | 179 | 58 | 201 | 2.62e-25 | 99.0 |
| Msa0025120 | MtrunA17_Chr7g0217111 | 54.545 | 99 | 38 | 1 | 28 | 119 | 76 | 174 | 7.00e-25 | 98.2 |
| Msa0025120 | MtrunA17_Chr8g0346251 | 42.308 | 130 | 56 | 3 | 36 | 155 | 45 | 165 | 1.89e-24 | 96.7 |
| Msa0025120 | MtrunA17_Chr5g0403701 | 43.519 | 108 | 61 | 0 | 25 | 132 | 46 | 153 | 5.46e-21 | 86.7 |
| Msa0025120 | MtrunA17_Chr4g0054421 | 48.315 | 89 | 46 | 0 | 32 | 120 | 127 | 215 | 1.20e-18 | 81.6 |
| Msa0025120 | MtrunA17_Chr7g0258831 | 45.161 | 93 | 51 | 0 | 32 | 124 | 160 | 252 | 1.70e-18 | 81.6 |
| Msa0025120 | MtrunA17_Chr5g0403691 | 41.739 | 115 | 60 | 1 | 25 | 132 | 46 | 160 | 1.72e-18 | 80.1 |
| Msa0025120 | MtrunA17_Chr4g0055851 | 38.971 | 136 | 66 | 3 | 32 | 159 | 120 | 246 | 1.89e-18 | 81.3 |
| Msa0025120 | MtrunA17_Chr1g0151971 | 41.748 | 103 | 60 | 0 | 18 | 120 | 116 | 218 | 6.32e-18 | 79.7 |
| Msa0025120 | MtrunA17_Chr1g0175651 | 44.944 | 89 | 49 | 0 | 32 | 120 | 154 | 242 | 1.33e-17 | 79.0 |
| Msa0025120 | MtrunA17_Chr5g0399491 | 47.191 | 89 | 47 | 0 | 32 | 120 | 136 | 224 | 4.24e-17 | 77.8 |
| Msa0025120 | MtrunA17_Chr8g0335131 | 46.067 | 89 | 48 | 0 | 32 | 120 | 146 | 234 | 5.46e-17 | 77.4 |
| Msa0025120 | MtrunA17_Chr2g0308611 | 43.820 | 89 | 50 | 0 | 32 | 120 | 200 | 288 | 9.66e-17 | 77.0 |
| Msa0025120 | MtrunA17_Chr4g0044091 | 46.067 | 89 | 48 | 0 | 32 | 120 | 65 | 153 | 7.39e-16 | 72.8 |
| Msa0025120 | MtrunA17_Chr5g0400781 | 43.820 | 89 | 50 | 0 | 32 | 120 | 123 | 211 | 1.44e-15 | 73.2 |
| Msa0025120 | MtrunA17_Chr4g0071411 | 44.186 | 86 | 48 | 0 | 35 | 120 | 91 | 176 | 1.74e-15 | 72.0 |
| Msa0025120 | MtrunA17_Chr3g0135331 | 43.820 | 89 | 50 | 0 | 32 | 120 | 145 | 233 | 6.92e-15 | 71.6 |
| Msa0025120 | MtrunA17_Chr2g0299031 | 42.697 | 89 | 51 | 0 | 32 | 120 | 82 | 170 | 3.26e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025120 | AT5G03790.1 | 58.571 | 140 | 57 | 1 | 11 | 150 | 56 | 194 | 4.40e-46 | 152 |
| Msa0025120 | AT2G36610.1 | 61.062 | 113 | 35 | 2 | 30 | 134 | 69 | 180 | 5.00e-41 | 138 |
| Msa0025120 | AT5G03790.2 | 76.744 | 86 | 20 | 0 | 32 | 117 | 77 | 162 | 1.17e-39 | 134 |
| Msa0025120 | AT1G69780.1 | 43.333 | 150 | 72 | 1 | 22 | 171 | 75 | 211 | 5.18e-31 | 115 |
| Msa0025120 | AT4G40060.1 | 44.118 | 136 | 67 | 2 | 23 | 149 | 50 | 185 | 3.25e-30 | 113 |
| Msa0025120 | AT5G15150.1 | 62.637 | 91 | 34 | 0 | 31 | 121 | 114 | 204 | 1.40e-29 | 112 |
| Msa0025120 | AT2G22430.1 | 51.923 | 104 | 43 | 1 | 25 | 121 | 55 | 158 | 1.88e-28 | 108 |
| Msa0025120 | AT3G01470.1 | 34.343 | 198 | 118 | 3 | 1 | 191 | 39 | 231 | 7.55e-28 | 106 |
| Msa0025120 | AT3G01220.1 | 53.271 | 107 | 43 | 1 | 31 | 130 | 86 | 192 | 2.63e-27 | 105 |
| Msa0025120 | AT5G65310.1 | 49.505 | 101 | 51 | 0 | 23 | 123 | 63 | 163 | 3.16e-27 | 105 |
| Msa0025120 | AT5G65310.2 | 49.505 | 101 | 51 | 0 | 23 | 123 | 45 | 145 | 3.29e-27 | 105 |
| Msa0025120 | AT3G61890.1 | 39.264 | 163 | 70 | 3 | 35 | 186 | 33 | 177 | 4.04e-27 | 103 |
| Msa0025120 | AT1G26960.1 | 41.611 | 149 | 66 | 3 | 22 | 165 | 61 | 193 | 1.90e-25 | 99.8 |
| Msa0025120 | AT2G46680.1 | 52.688 | 93 | 37 | 1 | 33 | 118 | 33 | 125 | 3.11e-25 | 99.4 |
| Msa0025120 | AT2G46680.2 | 50.505 | 99 | 42 | 1 | 33 | 124 | 33 | 131 | 1.88e-24 | 97.1 |
| Msa0025120 | AT2G18550.1 | 40.496 | 121 | 68 | 1 | 32 | 148 | 61 | 181 | 2.13e-24 | 96.3 |
| Msa0025120 | AT4G36740.2 | 51.111 | 90 | 44 | 0 | 32 | 121 | 56 | 145 | 5.51e-24 | 95.1 |
| Msa0025120 | AT4G36740.1 | 51.111 | 90 | 44 | 0 | 32 | 121 | 55 | 144 | 5.57e-24 | 95.1 |
| Msa0025120 | AT1G27045.5 | 49.020 | 102 | 45 | 1 | 32 | 126 | 25 | 126 | 9.68e-23 | 90.9 |
| Msa0025120 | AT1G27045.3 | 49.020 | 102 | 45 | 1 | 32 | 126 | 25 | 126 | 9.68e-23 | 90.9 |
| Msa0025120 | AT1G27045.1 | 49.020 | 102 | 45 | 1 | 32 | 126 | 68 | 169 | 1.17e-22 | 91.7 |
| Msa0025120 | AT1G27045.2 | 49.020 | 102 | 45 | 1 | 32 | 126 | 17 | 118 | 1.25e-22 | 90.5 |
| Msa0025120 | AT5G66700.1 | 48.913 | 92 | 47 | 0 | 32 | 123 | 71 | 162 | 7.60e-22 | 89.7 |
| Msa0025120 | AT1G27045.4 | 43.636 | 110 | 58 | 1 | 32 | 141 | 68 | 173 | 4.96e-21 | 87.8 |
| Msa0025120 | AT5G53980.1 | 44.211 | 95 | 53 | 0 | 32 | 126 | 11 | 105 | 2.04e-17 | 76.3 |
| Msa0025120 | AT5G06710.1 | 41.837 | 98 | 57 | 0 | 23 | 120 | 181 | 278 | 8.02e-17 | 77.8 |
| Msa0025120 | AT4G16780.1 | 44.944 | 89 | 49 | 0 | 32 | 120 | 129 | 217 | 1.22e-16 | 76.6 |
| Msa0025120 | AT2G01430.1 | 48.315 | 89 | 46 | 0 | 32 | 120 | 139 | 227 | 1.44e-16 | 76.3 |
| Msa0025120 | AT3G60390.1 | 46.067 | 89 | 48 | 0 | 32 | 120 | 162 | 250 | 2.56e-16 | 76.3 |
| Msa0025120 | AT4G17460.1 | 42.697 | 89 | 51 | 0 | 32 | 120 | 135 | 223 | 3.27e-16 | 75.5 |
| Msa0025120 | AT2G22800.1 | 43.820 | 89 | 50 | 0 | 32 | 120 | 113 | 201 | 6.43e-16 | 74.7 |
| Msa0025120 | AT4G37790.1 | 43.820 | 89 | 50 | 0 | 32 | 120 | 126 | 214 | 1.11e-15 | 73.9 |
| Msa0025120 | AT2G44910.1 | 42.697 | 89 | 51 | 0 | 32 | 120 | 163 | 251 | 2.80e-15 | 73.2 |
| Msa0025120 | AT5G47370.1 | 41.573 | 89 | 52 | 0 | 32 | 120 | 130 | 218 | 3.88e-15 | 72.4 |
| Msa0025120 | AT1G70920.1 | 39.796 | 98 | 59 | 0 | 23 | 120 | 60 | 157 | 2.82e-12 | 63.5 |
| Msa0025120 | AT1G70920.2 | 39.796 | 98 | 59 | 0 | 23 | 120 | 30 | 127 | 2.95e-12 | 62.8 |
| Msa0025120 | AT5G06710.4 | 47.541 | 61 | 32 | 0 | 23 | 83 | 181 | 241 | 6.11e-12 | 63.5 |
| Msa0025120 | AT2G01430.2 | 56.604 | 53 | 23 | 0 | 32 | 84 | 139 | 191 | 1.53e-11 | 61.6 |
Find 45 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTAGCACGCCTATTT+TGG | 0.156053 | 1_1:+48116922 | None:intergenic |
| TTGCTATTTGGTTCCAAAAT+AGG | 0.158232 | 1_1:-48116935 | Msa0025120:CDS |
| AGCCTCGTCAAATTGCTATT+TGG | 0.235729 | 1_1:-48116947 | Msa0025120:CDS |
| CCTTGGACACAACCTCAAAT+TGG | 0.274196 | 1_1:+48116859 | None:intergenic |
| AAACTGTTGTTTCAATTTAG+AGG | 0.288321 | 1_1:-48115390 | Msa0025120:CDS |
| ATGAAGCTTTCCAAGGAGTT+AGG | 0.302805 | 1_1:-48116975 | Msa0025120:CDS |
| CTTTCCCTTCACCTCTCTGT+TGG | 0.348637 | 1_1:+48115442 | None:intergenic |
| GAAAGCTTCATCTTCCTTTG+AGG | 0.362313 | 1_1:+48116987 | None:intergenic |
| AATTAAGGGTGATAGTTATA+AGG | 0.365223 | 1_1:+48115314 | None:intergenic |
| AAAGCTTCATCTTCCTTTGA+GGG | 0.383872 | 1_1:+48116988 | None:intergenic |
| GCAGGCCAGTAGGGCAATAG+TGG | 0.385106 | 1_1:+48115344 | None:intergenic |
| GTAGTTGTAGAGGAAGCTTA+AGG | 0.434188 | 1_1:+48117545 | None:intergenic |
| GTGTTCCACTATTGCCCTAC+TGG | 0.465761 | 1_1:-48115349 | Msa0025120:CDS |
| TGAAGCTTTCCAAGGAGTTA+GGG | 0.476348 | 1_1:-48116974 | Msa0025120:CDS |
| CCAATTTGAGGTTGTGTCCA+AGG | 0.478928 | 1_1:-48116859 | Msa0025120:CDS |
| TTCACTTAGACACCAATTTG+AGG | 0.493024 | 1_1:-48116871 | Msa0025120:CDS |
| ATACAAGTGTTCAAGTTGCT+TGG | 0.493063 | 1_1:+48116896 | None:intergenic |
| GGTACAGAAGCAGGCCAGTA+GGG | 0.495028 | 1_1:+48115335 | None:intergenic |
| AGGCTGTAGCCCTAACTCCT+TGG | 0.496406 | 1_1:+48116965 | None:intergenic |
| TGTTCAGGTTGTGAAGTTGA+AGG | 0.499837 | 1_1:-48115579 | Msa0025120:intron |
| GGTTCCAAAATAGGCGTGCT+AGG | 0.516451 | 1_1:-48116926 | Msa0025120:CDS |
| TACAACCAATGCTCATATCA+AGG | 0.516637 | 1_1:-48117525 | Msa0025120:intron |
| TAGTTATAAGGTACAGAAGC+AGG | 0.517499 | 1_1:+48115326 | None:intergenic |
| CAACAGTTGAACATTGATGA+AGG | 0.518077 | 1_1:-48115413 | Msa0025120:CDS |
| AAAACAGCAGCTTCAGGATG+AGG | 0.518698 | 1_1:-48116835 | Msa0025120:intron |
| AGCATTGGTTGTAGTTGTAG+AGG | 0.525273 | 1_1:+48117535 | None:intergenic |
| TAGATAATTATGGAATGGAA+TGG | 0.526946 | 1_1:-48117603 | None:intergenic |
| AACTCTTGTGGTAGAATGCA+AGG | 0.527714 | 1_1:-48115536 | Msa0025120:CDS |
| GAGTGAACAGATGGAATCAC+TGG | 0.535577 | 1_1:-48117042 | Msa0025120:CDS |
| AGGTACAGAAGCAGGCCAGT+AGG | 0.540474 | 1_1:+48115334 | None:intergenic |
| GCGATTAACGAGTGAACAGA+TGG | 0.542500 | 1_1:-48117051 | Msa0025120:CDS |
| ACAGATAGATAATTATGGAA+TGG | 0.549629 | 1_1:-48117608 | None:intergenic |
| CTTAAGGAAGACTCTGGTTG+AGG | 0.556116 | 1_1:+48117561 | None:intergenic |
| TTGCTCCAACAGAGAGGTGA+AGG | 0.556685 | 1_1:-48115447 | Msa0025120:CDS |
| AGATCAAACTAGACCCTCAA+AGG | 0.558248 | 1_1:-48117001 | Msa0025120:CDS |
| AACAGTAGAAAGCACATCAG+AGG | 0.578567 | 1_1:-48115480 | Msa0025120:CDS |
| AAAGAACAAGGTAACTCTTG+TGG | 0.599344 | 1_1:-48115548 | Msa0025120:CDS |
| AGGAAGCTTAAGGAAGACTC+TGG | 0.609695 | 1_1:+48117555 | None:intergenic |
| AAGGAAGATGAAGCTTTCCA+AGG | 0.615641 | 1_1:-48116982 | Msa0025120:CDS |
| AAGGCTATGTTGAAAGAACA+AGG | 0.632753 | 1_1:-48115560 | Msa0025120:CDS |
| TCCAAAATAGGCGTGCTAGG+TGG | 0.637372 | 1_1:-48116923 | Msa0025120:CDS |
| TTACTATACAGAAATGTCAG+TGG | 0.650416 | 1_1:-48115513 | Msa0025120:CDS |
| TGCTCCAACAGAGAGGTGAA+GGG | 0.655501 | 1_1:-48115446 | Msa0025120:CDS |
| AACCAAATAGCAATTTGACG+AGG | 0.698239 | 1_1:+48116945 | None:intergenic |
| TCTACGTTGCTCCAACAGAG+AGG | 0.709736 | 1_1:-48115453 | Msa0025120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATAAGTTTAAATATA+GGG | + | chr1_1:48115506-48115525 | None:intergenic | 10.0% |
| !! | TTAATCATAAGTTTAAATAT+AGG | + | chr1_1:48115507-48115526 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | - | chr1_1:48116311-48116330 | Msa0025120:intron | 10.0% |
| !! | AGAGAAAAATAAATTATTTA+AGG | - | chr1_1:48116454-48116473 | Msa0025120:intron | 10.0% |
| !!! | TTTTCTCTTATTTATATTAT+TGG | - | chr1_1:48116993-48117012 | Msa0025120:CDS | 10.0% |
| !! | TAATCATAAGTTTAAATATA+GGG | + | chr1_1:48115506-48115525 | None:intergenic | 10.0% |
| !! | TTAATCATAAGTTTAAATAT+AGG | + | chr1_1:48115507-48115526 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | - | chr1_1:48116311-48116330 | Msa0025120:intron | 10.0% |
| !! | AGAGAAAAATAAATTATTTA+AGG | - | chr1_1:48116454-48116473 | Msa0025120:intron | 10.0% |
| !!! | TTTTCTCTTATTTATATTAT+TGG | - | chr1_1:48116993-48117012 | Msa0025120:CDS | 10.0% |
| !!! | TTTTTTTCTTCTTCTATATA+TGG | - | chr1_1:48115564-48115583 | Msa0025120:CDS | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | + | chr1_1:48116451-48116470 | None:intergenic | 15.0% |
| !! | TACGTAAAAAAAATCTAAAA+TGG | - | chr1_1:48116539-48116558 | Msa0025120:intron | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | - | chr1_1:48116646-48116665 | Msa0025120:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | + | chr1_1:48117198-48117217 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | - | chr1_1:48117227-48117246 | Msa0025120:intron | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | + | chr1_1:48117300-48117319 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTCTTCTATATA+TGG | - | chr1_1:48115564-48115583 | Msa0025120:CDS | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | + | chr1_1:48116451-48116470 | None:intergenic | 15.0% |
| !! | TACGTAAAAAAAATCTAAAA+TGG | - | chr1_1:48116539-48116558 | Msa0025120:intron | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | - | chr1_1:48116646-48116665 | Msa0025120:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | + | chr1_1:48117198-48117217 | None:intergenic | 15.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | - | chr1_1:48117227-48117246 | Msa0025120:intron | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | + | chr1_1:48117300-48117319 | None:intergenic | 15.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | + | chr1_1:48115476-48115495 | None:intergenic | 20.0% |
| !! | GAAAAAAAACTATATATGCA+TGG | + | chr1_1:48115552-48115571 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTACGTATGTT+TGG | - | chr1_1:48115612-48115631 | Msa0025120:intron | 20.0% |
| !! | TCATTCTCATATATTATTAC+CGG | - | chr1_1:48115688-48115707 | Msa0025120:intron | 20.0% |
| !!! | AAGCGCAAATAATTTTATTT+TGG | - | chr1_1:48116238-48116257 | Msa0025120:intron | 20.0% |
| !! | TAAATAGAGAAATACTTACA+TGG | + | chr1_1:48116381-48116400 | None:intergenic | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | - | chr1_1:48116499-48116518 | Msa0025120:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | - | chr1_1:48116511-48116530 | Msa0025120:intron | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | - | chr1_1:48116512-48116531 | Msa0025120:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | - | chr1_1:48116573-48116592 | Msa0025120:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | + | chr1_1:48116733-48116752 | None:intergenic | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | - | chr1_1:48116797-48116816 | Msa0025120:intron | 20.0% |
| !! | ATACATACATACATACATAT+TGG | + | chr1_1:48117084-48117103 | None:intergenic | 20.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | + | chr1_1:48115476-48115495 | None:intergenic | 20.0% |
| !! | GAAAAAAAACTATATATGCA+TGG | + | chr1_1:48115552-48115571 | None:intergenic | 20.0% |
| !! | ATTCAAAATTTACGTATGTT+TGG | - | chr1_1:48115612-48115631 | Msa0025120:intron | 20.0% |
| !! | TCATTCTCATATATTATTAC+CGG | - | chr1_1:48115688-48115707 | Msa0025120:intron | 20.0% |
| !!! | AAGCGCAAATAATTTTATTT+TGG | - | chr1_1:48116238-48116257 | Msa0025120:intron | 20.0% |
| !! | TAAATAGAGAAATACTTACA+TGG | + | chr1_1:48116381-48116400 | None:intergenic | 20.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | - | chr1_1:48116499-48116518 | Msa0025120:intron | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | - | chr1_1:48116511-48116530 | Msa0025120:intron | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | - | chr1_1:48116512-48116531 | Msa0025120:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | - | chr1_1:48116573-48116592 | Msa0025120:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | + | chr1_1:48116733-48116752 | None:intergenic | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | - | chr1_1:48116797-48116816 | Msa0025120:intron | 20.0% |
| !! | ATACATACATACATACATAT+TGG | + | chr1_1:48117084-48117103 | None:intergenic | 20.0% |
| ! | AAAAACTATATATGCATGGT+TGG | + | chr1_1:48115548-48115567 | None:intergenic | 25.0% |
| ! | TATATGGCATATATATAGCT+TGG | - | chr1_1:48115580-48115599 | Msa0025120:intron | 25.0% |
| !! | AATATTGTGTGTGTTTGTTA+AGG | - | chr1_1:48115743-48115762 | Msa0025120:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | + | chr1_1:48115811-48115830 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | + | chr1_1:48115812-48115831 | None:intergenic | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | - | chr1_1:48115815-48115834 | Msa0025120:intron | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | - | chr1_1:48115816-48115835 | Msa0025120:intron | 25.0% |
| ! | TTTACCTTCTCATTGAAATT+TGG | + | chr1_1:48116603-48116622 | None:intergenic | 25.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | - | chr1_1:48116676-48116695 | Msa0025120:intron | 25.0% |
| !! | GTAAGTTGGAGTAATATATT+TGG | + | chr1_1:48116706-48116725 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+CGG | - | chr1_1:48116755-48116774 | Msa0025120:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | - | chr1_1:48116808-48116827 | Msa0025120:intron | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | + | chr1_1:48116972-48116991 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | - | chr1_1:48117520-48117539 | Msa0025120:intron | 25.0% |
| ! | AAAAACTATATATGCATGGT+TGG | + | chr1_1:48115548-48115567 | None:intergenic | 25.0% |
| ! | TATATGGCATATATATAGCT+TGG | - | chr1_1:48115580-48115599 | Msa0025120:intron | 25.0% |
| !! | AATATTGTGTGTGTTTGTTA+AGG | - | chr1_1:48115743-48115762 | Msa0025120:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | + | chr1_1:48115811-48115830 | None:intergenic | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | + | chr1_1:48115812-48115831 | None:intergenic | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | - | chr1_1:48115815-48115834 | Msa0025120:intron | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | - | chr1_1:48115816-48115835 | Msa0025120:intron | 25.0% |
| ! | TTTACCTTCTCATTGAAATT+TGG | + | chr1_1:48116603-48116622 | None:intergenic | 25.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | - | chr1_1:48116676-48116695 | Msa0025120:intron | 25.0% |
| !! | GTAAGTTGGAGTAATATATT+TGG | + | chr1_1:48116706-48116725 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+CGG | - | chr1_1:48116755-48116774 | Msa0025120:intron | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | - | chr1_1:48116808-48116827 | Msa0025120:intron | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | + | chr1_1:48116972-48116991 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | - | chr1_1:48117520-48117539 | Msa0025120:intron | 25.0% |
| ! | TTTTACCTTGATATGAGCAT+TGG | + | chr1_1:48115393-48115412 | None:intergenic | 30.0% |
| !! | TTGCTATTTGGTTCCAAAAT+AGG | - | chr1_1:48115975-48115994 | Msa0025120:intron | 30.0% |
| GTCAATGAACAATACCTAAA+TGG | - | chr1_1:48116185-48116204 | Msa0025120:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | - | chr1_1:48116191-48116210 | Msa0025120:intron | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | - | chr1_1:48116336-48116355 | Msa0025120:intron | 30.0% | |
| ! | GTCTAAATGGATTTCATTTG+TGG | - | chr1_1:48116349-48116368 | Msa0025120:intron | 30.0% |
| TAGTCCAAATTTCAATGAGA+AGG | - | chr1_1:48116596-48116615 | Msa0025120:intron | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | - | chr1_1:48116661-48116680 | Msa0025120:intron | 30.0% |
| AGTTGGAGTAATATATTTGG+TGG | + | chr1_1:48116703-48116722 | None:intergenic | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | + | chr1_1:48116730-48116749 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTCATCATAAGATC+CGG | + | chr1_1:48116777-48116796 | None:intergenic | 30.0% |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | - | chr1_1:48116807-48116826 | Msa0025120:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | - | chr1_1:48116809-48116828 | Msa0025120:intron | 30.0% |
| !! | ATTTGGTGGTGTAAACTAAA+TGG | - | chr1_1:48116838-48116857 | Msa0025120:CDS | 30.0% |
| TGTCACCATGATTTCATTAA+GGG | + | chr1_1:48116866-48116885 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | - | chr1_1:48117397-48117416 | Msa0025120:intron | 30.0% | |
| ! | TTTTACCTTGATATGAGCAT+TGG | + | chr1_1:48115393-48115412 | None:intergenic | 30.0% |
| !! | TTGCTATTTGGTTCCAAAAT+AGG | - | chr1_1:48115975-48115994 | Msa0025120:intron | 30.0% |
| GTCAATGAACAATACCTAAA+TGG | - | chr1_1:48116185-48116204 | Msa0025120:intron | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | - | chr1_1:48116191-48116210 | Msa0025120:intron | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | - | chr1_1:48116336-48116355 | Msa0025120:intron | 30.0% | |
| ! | GTCTAAATGGATTTCATTTG+TGG | - | chr1_1:48116349-48116368 | Msa0025120:intron | 30.0% |
| TAGTCCAAATTTCAATGAGA+AGG | - | chr1_1:48116596-48116615 | Msa0025120:intron | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | - | chr1_1:48116661-48116680 | Msa0025120:intron | 30.0% |
| AGTTGGAGTAATATATTTGG+TGG | + | chr1_1:48116703-48116722 | None:intergenic | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | + | chr1_1:48116730-48116749 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTCATCATAAGATC+CGG | + | chr1_1:48116777-48116796 | None:intergenic | 30.0% |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | - | chr1_1:48116807-48116826 | Msa0025120:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | - | chr1_1:48116809-48116828 | Msa0025120:intron | 30.0% |
| !! | ATTTGGTGGTGTAAACTAAA+TGG | - | chr1_1:48116838-48116857 | Msa0025120:CDS | 30.0% |
| TGTCACCATGATTTCATTAA+GGG | + | chr1_1:48116866-48116885 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | - | chr1_1:48117397-48117416 | Msa0025120:intron | 30.0% | |
| TACAACCAATGCTCATATCA+AGG | - | chr1_1:48115385-48115404 | Msa0025120:CDS | 35.0% | |
| ACACACGTAACTACATACAA+TGG | - | chr1_1:48115662-48115681 | Msa0025120:intron | 35.0% | |
| TATTACCGGTGTCTACATAT+CGG | - | chr1_1:48115702-48115721 | Msa0025120:intron | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | - | chr1_1:48115751-48115770 | Msa0025120:intron | 35.0% |
| AGATACAATGTTCCCAGAAA+TGG | - | chr1_1:48115796-48115815 | Msa0025120:intron | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | + | chr1_1:48115925-48115944 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | + | chr1_1:48115968-48115987 | None:intergenic | 35.0% | |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | + | chr1_1:48116017-48116036 | None:intergenic | 35.0% |
| TTCACTTAGACACCAATTTG+AGG | - | chr1_1:48116039-48116058 | Msa0025120:intron | 35.0% | |
| !!! | TATTTTGGCGCATACACAAA+TGG | - | chr1_1:48116253-48116272 | Msa0025120:intron | 35.0% |
| CGTCTACACTTATTCGTATA+TGG | + | chr1_1:48116422-48116441 | None:intergenic | 35.0% | |
| ATACGAATAAGTGTAGACGT+CGG | - | chr1_1:48116423-48116442 | Msa0025120:intron | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | + | chr1_1:48116591-48116610 | None:intergenic | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | + | chr1_1:48116720-48116739 | None:intergenic | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | + | chr1_1:48116867-48116886 | None:intergenic | 35.0% | |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | - | chr1_1:48117316-48117335 | Msa0025120:intron | 35.0% |
| AAGGCTATGTTGAAAGAACA+AGG | - | chr1_1:48117350-48117369 | Msa0025120:intron | 35.0% | |
| AAAGAACAAGGTAACTCTTG+TGG | - | chr1_1:48117362-48117381 | Msa0025120:intron | 35.0% | |
| CAACAGTTGAACATTGATGA+AGG | - | chr1_1:48117497-48117516 | Msa0025120:intron | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | + | chr1_1:48117587-48117606 | None:intergenic | 35.0% | |
| TACAACCAATGCTCATATCA+AGG | - | chr1_1:48115385-48115404 | Msa0025120:CDS | 35.0% | |
| ACACACGTAACTACATACAA+TGG | - | chr1_1:48115662-48115681 | Msa0025120:intron | 35.0% | |
| TATTACCGGTGTCTACATAT+CGG | - | chr1_1:48115702-48115721 | Msa0025120:intron | 35.0% | |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | - | chr1_1:48115751-48115770 | Msa0025120:intron | 35.0% |
| AGATACAATGTTCCCAGAAA+TGG | - | chr1_1:48115796-48115815 | Msa0025120:intron | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | + | chr1_1:48115925-48115944 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | + | chr1_1:48115968-48115987 | None:intergenic | 35.0% | |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | + | chr1_1:48116017-48116036 | None:intergenic | 35.0% |
| TTCACTTAGACACCAATTTG+AGG | - | chr1_1:48116039-48116058 | Msa0025120:intron | 35.0% | |
| !!! | TATTTTGGCGCATACACAAA+TGG | - | chr1_1:48116253-48116272 | Msa0025120:intron | 35.0% |
| CGTCTACACTTATTCGTATA+TGG | + | chr1_1:48116422-48116441 | None:intergenic | 35.0% | |
| ATACGAATAAGTGTAGACGT+CGG | - | chr1_1:48116423-48116442 | Msa0025120:intron | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | + | chr1_1:48116591-48116610 | None:intergenic | 35.0% | |
| TATATTGAGGTGGTGTAAGT+TGG | + | chr1_1:48116720-48116739 | None:intergenic | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | + | chr1_1:48116867-48116886 | None:intergenic | 35.0% | |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | - | chr1_1:48117316-48117335 | Msa0025120:intron | 35.0% |
| AAGGCTATGTTGAAAGAACA+AGG | - | chr1_1:48117350-48117369 | Msa0025120:intron | 35.0% | |
| AAAGAACAAGGTAACTCTTG+TGG | - | chr1_1:48117362-48117381 | Msa0025120:intron | 35.0% | |
| CAACAGTTGAACATTGATGA+AGG | - | chr1_1:48117497-48117516 | Msa0025120:intron | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | + | chr1_1:48117587-48117606 | None:intergenic | 35.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | + | chr1_1:48115368-48115387 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | + | chr1_1:48115378-48115397 | None:intergenic | 40.0% |
| ! | TACGTGTGTCGATATCATGT+TGG | + | chr1_1:48115651-48115670 | None:intergenic | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | - | chr1_1:48115886-48115905 | Msa0025120:intron | 40.0% |
| AGATCAAACTAGACCCTCAA+AGG | - | chr1_1:48115909-48115928 | Msa0025120:intron | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | + | chr1_1:48115926-48115945 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | - | chr1_1:48115928-48115947 | Msa0025120:intron | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | - | chr1_1:48115935-48115954 | Msa0025120:intron | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | - | chr1_1:48115936-48115955 | Msa0025120:intron | 40.0% | |
| ! | AGCCTCGTCAAATTGCTATT+TGG | - | chr1_1:48115963-48115982 | Msa0025120:intron | 40.0% |
| TAACACAGCCGTAACCATTT+AGG | + | chr1_1:48116202-48116221 | None:intergenic | 40.0% | |
| !! | ACGGCTGTGTTATTTAGATG+AGG | - | chr1_1:48116210-48116229 | Msa0025120:intron | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | - | chr1_1:48116211-48116230 | Msa0025120:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | - | chr1_1:48116821-48116840 | Msa0025120:intron | 40.0% |
| TGGCACCCTTAATGAAATCA+TGG | - | chr1_1:48116858-48116877 | Msa0025120:CDS | 40.0% | |
| CGAACGCGTAACTAAAATCA+TGG | - | chr1_1:48116905-48116924 | Msa0025120:CDS | 40.0% | |
| ! | CCATGTCTCTTTTGTAGACA+CGG | - | chr1_1:48117054-48117073 | Msa0025120:CDS | 40.0% |
| GAAACAAAGTTGCAGTGCTA+TGG | + | chr1_1:48117124-48117143 | None:intergenic | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | + | chr1_1:48117331-48117350 | None:intergenic | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | + | chr1_1:48117332-48117351 | None:intergenic | 40.0% | |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | - | chr1_1:48117331-48117350 | Msa0025120:intron | 40.0% |
| AACTCTTGTGGTAGAATGCA+AGG | - | chr1_1:48117374-48117393 | Msa0025120:intron | 40.0% | |
| ! | AACAGTAGAAAGCACATCAG+AGG | - | chr1_1:48117430-48117449 | Msa0025120:intron | 40.0% |
| GTAGTTGTAGAGGAAGCTTA+AGG | + | chr1_1:48115368-48115387 | None:intergenic | 40.0% | |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | + | chr1_1:48115378-48115397 | None:intergenic | 40.0% |
| ! | TACGTGTGTCGATATCATGT+TGG | + | chr1_1:48115651-48115670 | None:intergenic | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | - | chr1_1:48115886-48115905 | Msa0025120:intron | 40.0% |
| AGATCAAACTAGACCCTCAA+AGG | - | chr1_1:48115909-48115928 | Msa0025120:intron | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | + | chr1_1:48115926-48115945 | None:intergenic | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | - | chr1_1:48115928-48115947 | Msa0025120:intron | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | - | chr1_1:48115935-48115954 | Msa0025120:intron | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | - | chr1_1:48115936-48115955 | Msa0025120:intron | 40.0% | |
| ! | AGCCTCGTCAAATTGCTATT+TGG | - | chr1_1:48115963-48115982 | Msa0025120:intron | 40.0% |
| TAACACAGCCGTAACCATTT+AGG | + | chr1_1:48116202-48116221 | None:intergenic | 40.0% | |
| !! | ACGGCTGTGTTATTTAGATG+AGG | - | chr1_1:48116210-48116229 | Msa0025120:intron | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | - | chr1_1:48116211-48116230 | Msa0025120:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | - | chr1_1:48116821-48116840 | Msa0025120:intron | 40.0% |
| TGGCACCCTTAATGAAATCA+TGG | - | chr1_1:48116858-48116877 | Msa0025120:CDS | 40.0% | |
| CGAACGCGTAACTAAAATCA+TGG | - | chr1_1:48116905-48116924 | Msa0025120:CDS | 40.0% | |
| ! | CCATGTCTCTTTTGTAGACA+CGG | - | chr1_1:48117054-48117073 | Msa0025120:CDS | 40.0% |
| GAAACAAAGTTGCAGTGCTA+TGG | + | chr1_1:48117124-48117143 | None:intergenic | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | + | chr1_1:48117331-48117350 | None:intergenic | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | + | chr1_1:48117332-48117351 | None:intergenic | 40.0% | |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | - | chr1_1:48117331-48117350 | Msa0025120:intron | 40.0% |
| AACTCTTGTGGTAGAATGCA+AGG | - | chr1_1:48117374-48117393 | Msa0025120:intron | 40.0% | |
| ! | AACAGTAGAAAGCACATCAG+AGG | - | chr1_1:48117430-48117449 | Msa0025120:intron | 40.0% |
| CTTAAGGAAGACTCTGGTTG+AGG | + | chr1_1:48115352-48115371 | None:intergenic | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | + | chr1_1:48115358-48115377 | None:intergenic | 45.0% | |
| GAACACCGATATGTAGACAC+CGG | + | chr1_1:48115710-48115729 | None:intergenic | 45.0% | |
| TGGAAGTGAAACAGCAAGAC+TGG | - | chr1_1:48115771-48115790 | Msa0025120:intron | 45.0% | |
| GCGATTAACGAGTGAACAGA+TGG | - | chr1_1:48115859-48115878 | Msa0025120:intron | 45.0% | |
| GAGTGAACAGATGGAATCAC+TGG | - | chr1_1:48115868-48115887 | Msa0025120:intron | 45.0% | |
| CCTTGGACACAACCTCAAAT+TGG | + | chr1_1:48116054-48116073 | None:intergenic | 45.0% | |
| ! | CCAATTTGAGGTTGTGTCCA+AGG | - | chr1_1:48116051-48116070 | Msa0025120:intron | 45.0% |
| !!! | CTGAAGCTGCTGTTTTTCCT+TGG | + | chr1_1:48116071-48116090 | None:intergenic | 45.0% |
| CAAGGAAAAACAGCAGCTTC+AGG | - | chr1_1:48116069-48116088 | Msa0025120:intron | 45.0% | |
| AAAACAGCAGCTTCAGGATG+AGG | - | chr1_1:48116075-48116094 | Msa0025120:intron | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | - | chr1_1:48116824-48116843 | Msa0025120:intron | 45.0% |
| CCGTGTCTACAAAAGAGACA+TGG | + | chr1_1:48117057-48117076 | None:intergenic | 45.0% | |
| CTTAAGGAAGACTCTGGTTG+AGG | + | chr1_1:48115352-48115371 | None:intergenic | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | + | chr1_1:48115358-48115377 | None:intergenic | 45.0% | |
| GAACACCGATATGTAGACAC+CGG | + | chr1_1:48115710-48115729 | None:intergenic | 45.0% | |
| TGGAAGTGAAACAGCAAGAC+TGG | - | chr1_1:48115771-48115790 | Msa0025120:intron | 45.0% | |
| GCGATTAACGAGTGAACAGA+TGG | - | chr1_1:48115859-48115878 | Msa0025120:intron | 45.0% | |
| GAGTGAACAGATGGAATCAC+TGG | - | chr1_1:48115868-48115887 | Msa0025120:intron | 45.0% | |
| CCTTGGACACAACCTCAAAT+TGG | + | chr1_1:48116054-48116073 | None:intergenic | 45.0% | |
| ! | CCAATTTGAGGTTGTGTCCA+AGG | - | chr1_1:48116051-48116070 | Msa0025120:intron | 45.0% |
| !!! | CTGAAGCTGCTGTTTTTCCT+TGG | + | chr1_1:48116071-48116090 | None:intergenic | 45.0% |
| CAAGGAAAAACAGCAGCTTC+AGG | - | chr1_1:48116069-48116088 | Msa0025120:intron | 45.0% | |
| AAAACAGCAGCTTCAGGATG+AGG | - | chr1_1:48116075-48116094 | Msa0025120:intron | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | - | chr1_1:48116824-48116843 | Msa0025120:intron | 45.0% |
| CCGTGTCTACAAAAGAGACA+TGG | + | chr1_1:48117057-48117076 | None:intergenic | 45.0% | |
| !! | ATATTATAAATTTATTCTAA+CGG | - | chr1_1:48116750-48116769 | Msa0025120:intron | 5.0% |
| !! | ATATTATAAATTTATTCTAA+CGG | - | chr1_1:48116750-48116769 | Msa0025120:intron | 5.0% |
| GGTTCCAAAATAGGCGTGCT+AGG | - | chr1_1:48115984-48116003 | Msa0025120:intron | 50.0% | |
| TCCAAAATAGGCGTGCTAGG+TGG | - | chr1_1:48115987-48116006 | Msa0025120:intron | 50.0% | |
| ! | TCCACCTAGCACGCCTATTT+TGG | + | chr1_1:48115991-48116010 | None:intergenic | 50.0% |
| TCTACGTTGCTCCAACAGAG+AGG | - | chr1_1:48117457-48117476 | Msa0025120:intron | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | - | chr1_1:48117463-48117482 | Msa0025120:intron | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | - | chr1_1:48117464-48117483 | Msa0025120:intron | 50.0% | |
| CTTTCCCTTCACCTCTCTGT+TGG | + | chr1_1:48117471-48117490 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | - | chr1_1:48117561-48117580 | Msa0025120:CDS | 50.0% | |
| GGTTCCAAAATAGGCGTGCT+AGG | - | chr1_1:48115984-48116003 | Msa0025120:intron | 50.0% | |
| TCCAAAATAGGCGTGCTAGG+TGG | - | chr1_1:48115987-48116006 | Msa0025120:intron | 50.0% | |
| ! | TCCACCTAGCACGCCTATTT+TGG | + | chr1_1:48115991-48116010 | None:intergenic | 50.0% |
| TCTACGTTGCTCCAACAGAG+AGG | - | chr1_1:48117457-48117476 | Msa0025120:intron | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | - | chr1_1:48117463-48117482 | Msa0025120:intron | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | - | chr1_1:48117464-48117483 | Msa0025120:intron | 50.0% | |
| CTTTCCCTTCACCTCTCTGT+TGG | + | chr1_1:48117471-48117490 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | - | chr1_1:48117561-48117580 | Msa0025120:CDS | 50.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | + | chr1_1:48115948-48115967 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | + | chr1_1:48117578-48117597 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | + | chr1_1:48117579-48117598 | None:intergenic | 55.0% | |
| AGGCTGTAGCCCTAACTCCT+TGG | + | chr1_1:48115948-48115967 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | + | chr1_1:48117578-48117597 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | + | chr1_1:48117579-48117598 | None:intergenic | 55.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | + | chr1_1:48117569-48117588 | None:intergenic | 60.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | + | chr1_1:48117569-48117588 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48115316 | 48117616 | 48115316 | ID=Msa0025120;Name=Msa0025120 |
| chr1_1 | mRNA | 48115316 | 48117616 | 48115316 | ID=Msa0025120-mRNA-1;Parent=Msa0025120;Name=Msa0025120-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0.5|0.33|3|0|205 |
| chr1_1 | exon | 48117526 | 48117616 | 48117526 | ID=Msa0025120-mRNA-1:exon:13809;Parent=Msa0025120-mRNA-1 |
| chr1_1 | exon | 48116836 | 48117083 | 48116836 | ID=Msa0025120-mRNA-1:exon:13808;Parent=Msa0025120-mRNA-1 |
| chr1_1 | exon | 48115316 | 48115594 | 48115316 | ID=Msa0025120-mRNA-1:exon:13807;Parent=Msa0025120-mRNA-1 |
| chr1_1 | CDS | 48117526 | 48117616 | 48117526 | ID=Msa0025120-mRNA-1:cds;Parent=Msa0025120-mRNA-1 |
| chr1_1 | CDS | 48116836 | 48117083 | 48116836 | ID=Msa0025120-mRNA-1:cds;Parent=Msa0025120-mRNA-1 |
| chr1_1 | CDS | 48115316 | 48115594 | 48115316 | ID=Msa0025120-mRNA-1:cds;Parent=Msa0025120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
