Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025270 | sp|Q9ZSS6|THD1_ARATH | 78.383 | 532 | 114 | 1 | 72 | 603 | 62 | 592 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025270 | G7I9D6 | 97.355 | 605 | 14 | 1 | 1 | 603 | 1 | 605 | 0.0 | 1219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025270 | Msa0072700 | 0.924889 | 3.851554e-90 | -8.615850e-47 |
| Msa0025270 | Msa1416530 | 0.890884 | 6.574934e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025270 | MtrunA17_Chr1g0179661 | 94.581 | 609 | 25 | 2 | 1 | 601 | 1 | 609 | 0.0 | 1137 |
| Msa0025270 | MtrunA17_Chr8g0386671 | 29.677 | 310 | 199 | 5 | 113 | 412 | 24 | 324 | 4.76e-36 | 138 |
| Msa0025270 | MtrunA17_Chr7g0265651 | 31.095 | 283 | 180 | 6 | 138 | 412 | 43 | 318 | 1.22e-31 | 125 |
| Msa0025270 | MtrunA17_Chr1g0177211 | 29.139 | 302 | 189 | 6 | 122 | 413 | 29 | 315 | 5.06e-24 | 103 |
| Msa0025270 | MtrunA17_Chr7g0265841 | 32.022 | 178 | 116 | 4 | 238 | 412 | 45 | 220 | 2.69e-21 | 93.2 |
| Msa0025270 | MtrunA17_Chr4g0045771 | 29.319 | 191 | 113 | 6 | 137 | 312 | 72 | 255 | 4.74e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025270 | AT3G10050.1 | 78.383 | 532 | 114 | 1 | 72 | 603 | 62 | 592 | 0.0 | 827 |
| Msa0025270 | AT4G11640.1 | 31.250 | 304 | 190 | 4 | 122 | 415 | 29 | 323 | 7.29e-32 | 126 |
Find 187 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAAGCACCAGGTCTTTC+TGG | 0.204169 | 1_1:+48275157 | None:intergenic |
| AGAAAGCTGTTGTTCTTTAC+AGG | 0.220056 | 1_1:-48275851 | Msa0025270:intron |
| TGTTCACAGGTGAAGATAAT+TGG | 0.222912 | 1_1:-48277478 | Msa0025270:intron |
| CATTACGACCATCAGAAATT+TGG | 0.259275 | 1_1:+48273086 | None:intergenic |
| TCATGGCCAAAGAGTGGTTT+TGG | 0.273388 | 1_1:-48277413 | Msa0025270:CDS |
| GCAGGCGCTCTTGCTCTTGC+TGG | 0.290001 | 1_1:-48276195 | Msa0025270:CDS |
| TGATCATCCCGATGTCATTA+TGG | 0.291301 | 1_1:-48277727 | Msa0025270:CDS |
| GAAGCATACTGCAAGTATTA+TGG | 0.291652 | 1_1:-48276168 | Msa0025270:CDS |
| GGTGCTACTGTGGTCCTTAT+TGG | 0.302177 | 1_1:-48277825 | Msa0025270:CDS |
| TAAACTTCCAAAGGATGTTT+TGG | 0.314115 | 1_1:-48278211 | Msa0025270:CDS |
| GCCGCCGGAGACTCAATAAT+TGG | 0.322575 | 1_1:+48279140 | None:intergenic |
| GACTAGTATACTTACTTCTA+AGG | 0.323743 | 1_1:-48278991 | Msa0025270:CDS |
| CCTTTCTCCAAAACATCCTT+TGG | 0.326655 | 1_1:+48278204 | None:intergenic |
| ATCGTAGCGCCTCCATGGTT+TGG | 0.327161 | 1_1:+48279306 | None:intergenic |
| GGAGGTGGTGGTCTCATTGC+TGG | 0.328700 | 1_1:-48277633 | Msa0025270:CDS |
| ACATTGTTGGACAATAAATA+TGG | 0.331590 | 1_1:-48273170 | Msa0025270:three_prime_UTR |
| CAGAAATTTGGTCAAGTAGA+AGG | 0.336101 | 1_1:+48273098 | None:intergenic |
| AAATGTATTAGTTGGAATTC+AGG | 0.343393 | 1_1:-48274945 | Msa0025270:CDS |
| AATGGTTTGAAACGAGGGTT+AGG | 0.357051 | 1_1:+48279215 | None:intergenic |
| GATCATCCCGATGTCATTAT+GGG | 0.362274 | 1_1:-48277726 | Msa0025270:CDS |
| GTTCACAGGTGAAGATAATT+GGG | 0.369464 | 1_1:-48277477 | Msa0025270:intron |
| CATGAACTGGACGCTTCATC+TGG | 0.370349 | 1_1:+48277673 | None:intergenic |
| CGTAATGGAAATCGAATATC+AGG | 0.370920 | 1_1:-48273070 | Msa0025270:three_prime_UTR |
| TGTTGAATCTCCTCTTGAAT+TGG | 0.375609 | 1_1:-48278955 | Msa0025270:CDS |
| TTCTAACCTGTGCACGGTAA+TGG | 0.384917 | 1_1:+48275089 | None:intergenic |
| CATCATAGGAATCTCCAATA+AGG | 0.388925 | 1_1:+48277811 | None:intergenic |
| TCGTAGCGCCTCCATGGTTT+GGG | 0.390256 | 1_1:+48279307 | None:intergenic |
| AAAGACTTGGTGTTAATGTT+TGG | 0.390736 | 1_1:-48278917 | Msa0025270:CDS |
| AGTATCAAAGTCTGTTGAAA+TGG | 0.394374 | 1_1:-48279171 | Msa0025270:CDS |
| AACGATCGTGCCACCGGACT+TGG | 0.396780 | 1_1:-48274896 | Msa0025270:CDS |
| CCAAGTCTTTCAGAAAGCTT+TGG | 0.402419 | 1_1:+48278930 | None:intergenic |
| GGCACAAAGATTGCATGAAC+TGG | 0.405936 | 1_1:+48277660 | None:intergenic |
| TGCAATTTGTGCATCGATAA+AGG | 0.407203 | 1_1:-48277284 | Msa0025270:intron |
| TCCCGATGTCATTATGGGTC+AGG | 0.412631 | 1_1:-48277721 | Msa0025270:CDS |
| AGAACCTCATTCTGAATATC+AGG | 0.417812 | 1_1:+48275196 | None:intergenic |
| TTGATGTCAGGAGTGGTAAC+TGG | 0.423089 | 1_1:+48278096 | None:intergenic |
| GCGGCGGTGGTTGTTATGAA+TGG | 0.423932 | 1_1:+48279197 | None:intergenic |
| CCTGGTCCAAAACCACTCTT+TGG | 0.424183 | 1_1:+48277407 | None:intergenic |
| CAAATTTCTGATGGTCGTAA+TGG | 0.424706 | 1_1:-48273085 | Msa0025270:three_prime_UTR |
| GGCGGCTCCTCCGAGGTTGA+AGG | 0.426236 | 1_1:-48279120 | Msa0025270:CDS |
| ATATGCTTGTGCTTCATCAT+AGG | 0.431422 | 1_1:+48277797 | None:intergenic |
| ACATGAATTTCGATAAACTT+AGG | 0.431536 | 1_1:-48276104 | Msa0025270:CDS |
| GGCGTTGCAATTCAATCTCT+TGG | 0.433590 | 1_1:+48278131 | None:intergenic |
| GCATTAAAAGCTTGAAGAAA+AGG | 0.446362 | 1_1:+48274846 | None:intergenic |
| AATTCCTCCATCTCGCTGCT+TGG | 0.448041 | 1_1:+48274920 | None:intergenic |
| TGCTTCGGACAGGGTGAAGC+TGG | 0.448565 | 1_1:-48274971 | Msa0025270:intron |
| CTTTGATACTGCGGCGGCGG+TGG | 0.450776 | 1_1:+48279184 | None:intergenic |
| TGTTCCAATTATTGAGTCTC+CGG | 0.452886 | 1_1:-48279144 | Msa0025270:CDS |
| TTTGTGCCTGTGGGAGGTGG+TGG | 0.459179 | 1_1:-48277645 | Msa0025270:CDS |
| GCTGGAGCAAATGTATTAGT+TGG | 0.462032 | 1_1:-48274953 | Msa0025270:CDS |
| CTTGTTAATATTCATAATTG+AGG | 0.465771 | 1_1:-48272954 | Msa0025270:three_prime_UTR |
| TGCTAAGAAGCGTGCTATAG+AGG | 0.467092 | 1_1:-48277775 | Msa0025270:CDS |
| GCATTCTGTGACGGTGGTTA+CGG | 0.467805 | 1_1:+48279255 | None:intergenic |
| AAAAGAAATGCAGGAGAGAA+TGG | 0.468861 | 1_1:-48275589 | Msa0025270:CDS |
| ATCTTTGTGCCTGTGGGAGG+TGG | 0.470012 | 1_1:-48277648 | Msa0025270:CDS |
| TTGTTAATATTCATAATTGA+GGG | 0.471035 | 1_1:-48272953 | Msa0025270:three_prime_UTR |
| GGTAACTGGCATTGCAATAA+CGG | 0.476308 | 1_1:+48278110 | None:intergenic |
| TAAATGAATACCTTGATGTC+AGG | 0.478406 | 1_1:+48278084 | None:intergenic |
| TCATAGGTTCTCTCAATTGG+AGG | 0.482490 | 1_1:-48273207 | Msa0025270:intron |
| CTCATTCTGAATATCAGGTC+GGG | 0.484844 | 1_1:+48275201 | None:intergenic |
| AAGAACAACAGCTTTCTCCT+TGG | 0.486008 | 1_1:+48275857 | None:intergenic |
| ATCGAAATTCATGTTTGCTC+CGG | 0.486984 | 1_1:+48276113 | None:intergenic |
| ACTGTCATGCCGGAGGAGCC+TGG | 0.487185 | 1_1:-48276030 | Msa0025270:CDS |
| CCCTGACCCATAATGACATC+GGG | 0.487914 | 1_1:+48277720 | None:intergenic |
| CGGAGGAGGAGGTGAGGTTG+TGG | 0.491684 | 1_1:+48279275 | None:intergenic |
| CAATCTCTCAGACGTTGACT+TGG | 0.492337 | 1_1:-48275544 | Msa0025270:CDS |
| CCAAAGCTTTCTGAAAGACT+TGG | 0.492496 | 1_1:-48278930 | Msa0025270:CDS |
| ATGACATCGGGATGATCAAA+AGG | 0.497200 | 1_1:+48277732 | None:intergenic |
| GGTGGATACTGAAGTGAATC+CGG | 0.500821 | 1_1:+48279092 | None:intergenic |
| AGCCAATGCATTTGCATCAG+TGG | 0.500969 | 1_1:+48277447 | None:intergenic |
| TTGAAACTGCCAGGCTCCTC+CGG | 0.501285 | 1_1:+48276021 | None:intergenic |
| AATTATTGAGTCTCCGGCGG+CGG | 0.501742 | 1_1:-48279138 | Msa0025270:CDS |
| CTACTTGACCAAATTTCTGA+TGG | 0.503098 | 1_1:-48273094 | Msa0025270:three_prime_UTR |
| TTTATTCCATTACCGTGCAC+AGG | 0.503763 | 1_1:-48275095 | Msa0025270:intron |
| CTTGTTGCAGGACATGTTTG+AGG | 0.504713 | 1_1:-48276241 | Msa0025270:intron |
| GCAAGAGCAAGAGCGCCTGC+TGG | 0.505562 | 1_1:+48276198 | None:intergenic |
| GCCAATGCATTTGCATCAGT+GGG | 0.508903 | 1_1:+48277448 | None:intergenic |
| TCACCACCACGTGTCCTGTC+AGG | 0.510048 | 1_1:+48279050 | None:intergenic |
| GATATTCCATCGTGGACTAA+AGG | 0.510605 | 1_1:+48275120 | None:intergenic |
| AACCTCGGAGGAGCCGCCGC+CGG | 0.515606 | 1_1:+48279125 | None:intergenic |
| TCCGGCGAAACCTTCAACCT+CGG | 0.516696 | 1_1:+48279110 | None:intergenic |
| TTTCCGCTTGTGCAAGGAGT+TGG | 0.517649 | 1_1:-48277335 | Msa0025270:CDS |
| CAAAACTGTTTGAAACTGCC+AGG | 0.518258 | 1_1:+48276012 | None:intergenic |
| ATGGTTTGAAACGAGGGTTA+GGG | 0.519460 | 1_1:+48279216 | None:intergenic |
| TTGGCTTTGTCACTTCATCA+TGG | 0.519786 | 1_1:-48277430 | Msa0025270:CDS |
| TCATGCAATCTTTGTGCCTG+TGG | 0.520262 | 1_1:-48277655 | Msa0025270:CDS |
| CTGCAAGTATTATGGACTCA+AGG | 0.522899 | 1_1:-48276160 | Msa0025270:CDS |
| GGTGGTGATGAAGGTGATTG+TGG | 0.525787 | 1_1:-48279035 | Msa0025270:CDS |
| CCGTGGAGCTTATAATATGA+TGG | 0.527606 | 1_1:-48278235 | Msa0025270:CDS |
| ACGTTGGAGCGGTTCCTGAC+AGG | 0.531537 | 1_1:-48279064 | Msa0025270:CDS |
| GTGGAAATCTGTGGAGAGGT+GGG | 0.532704 | 1_1:-48277847 | Msa0025270:CDS |
| GAAATTCATGTTTGCTCCGG+AGG | 0.534000 | 1_1:+48276116 | None:intergenic |
| ATTATGGGTCAGGGAACTGT+CGG | 0.534240 | 1_1:-48277711 | Msa0025270:CDS |
| GGGGTTATATGCTCTTCAGC+TGG | 0.534738 | 1_1:-48278183 | Msa0025270:CDS |
| TGTGACGGTGGTTACGGAGG+AGG | 0.536430 | 1_1:+48279261 | None:intergenic |
| CTTAGAACTAAAAGAAATGC+AGG | 0.539142 | 1_1:-48275598 | Msa0025270:CDS |
| TTATGAATGGTTTGAAACGA+GGG | 0.543995 | 1_1:+48279210 | None:intergenic |
| TCCGAGGTTGAAGGTTTCGC+CGG | 0.547453 | 1_1:-48279111 | Msa0025270:CDS |
| TGATAATCGTAGCGCCTCCA+TGG | 0.548967 | 1_1:+48279301 | None:intergenic |
| CCCGATGTCATTATGGGTCA+GGG | 0.549015 | 1_1:-48277720 | Msa0025270:CDS |
| CTACCAACTCCTTGCACAAG+CGG | 0.552453 | 1_1:+48277332 | None:intergenic |
| TTGTGCAAGGAGTTGGTAGA+TGG | 0.553314 | 1_1:-48277328 | Msa0025270:CDS |
| TTATGGGTCAGGGAACTGTC+GGG | 0.553513 | 1_1:-48277710 | Msa0025270:CDS |
| AGTTACCACTCCTGACATCA+AGG | 0.554442 | 1_1:-48278094 | Msa0025270:intron |
| TGCAAGTATTATGGACTCAA+GGG | 0.554844 | 1_1:-48276159 | Msa0025270:CDS |
| TCAGGTTCCAAGCAGCGAGA+TGG | 0.557536 | 1_1:-48274927 | Msa0025270:CDS |
| ATTCAATCTCTTGGCAGACA+TGG | 0.558202 | 1_1:+48278140 | None:intergenic |
| GACGGTGGTTACGGAGGAGG+AGG | 0.559083 | 1_1:+48279264 | None:intergenic |
| CATGCAATCTTTGTGCCTGT+GGG | 0.560166 | 1_1:-48277654 | Msa0025270:CDS |
| ATTATAGTCATACCCAAGTC+CGG | 0.560339 | 1_1:+48274883 | None:intergenic |
| ACGATCGTGCCACCGGACTT+GGG | 0.560800 | 1_1:-48274895 | Msa0025270:CDS |
| GGAAACTTTCCGCTTGTGCA+AGG | 0.561388 | 1_1:-48277341 | Msa0025270:CDS |
| GTATTCTCATTTAAGATCCG+TGG | 0.561595 | 1_1:-48278252 | Msa0025270:CDS |
| CTGGAAGAAGATTGTTCAAG+TGG | 0.562340 | 1_1:+48272929 | None:intergenic |
| GAATTCAACGATCGTGCCAC+CGG | 0.562341 | 1_1:-48274902 | Msa0025270:CDS |
| AGTGGAAATCTGTGGAGAGG+TGG | 0.565711 | 1_1:-48277848 | Msa0025270:CDS |
| GGAGAGGTGGGGTGCTACTG+TGG | 0.565931 | 1_1:-48277835 | Msa0025270:CDS |
| AGACTTTGATACTGCGGCGG+CGG | 0.567795 | 1_1:+48279181 | None:intergenic |
| CAGGTTGGAGGATTTGCAGA+TGG | 0.569395 | 1_1:-48277388 | Msa0025270:CDS |
| TCTGCTGTTAACTGTCATGC+CGG | 0.572842 | 1_1:-48276040 | Msa0025270:CDS |
| CTCCGGCGGCGGCTCCTCCG+AGG | 0.577523 | 1_1:-48279127 | Msa0025270:CDS |
| CCGACCTGATATTCAGAATG+AGG | 0.577734 | 1_1:-48275200 | Msa0025270:CDS |
| AGCACCAGGTCTTTCTGGAA+AGG | 0.579418 | 1_1:+48275162 | None:intergenic |
| GGGTCAGGGAACTGTCGGGA+TGG | 0.580900 | 1_1:-48277706 | Msa0025270:CDS |
| GGAACCGCTCCAACGTAACC+AGG | 0.581487 | 1_1:+48279071 | None:intergenic |
| AGGACACGTGGTGGTGATGA+AGG | 0.582103 | 1_1:-48279044 | Msa0025270:CDS |
| TCAGCTGGAAATCATGCTCA+AGG | 0.584823 | 1_1:-48278168 | Msa0025270:CDS |
| TGTGGTGCATTCTGTGACGG+TGG | 0.586258 | 1_1:+48279249 | None:intergenic |
| AGGAGCATATTGGAACCAGC+AGG | 0.586301 | 1_1:-48276213 | Msa0025270:CDS |
| AGCTTTGGCGCCAATTCAAG+AGG | 0.586347 | 1_1:+48278945 | None:intergenic |
| ACCTTTGCAGTGGAAATCTG+TGG | 0.590239 | 1_1:-48277856 | Msa0025270:intron |
| TATGATGGCTAAACTTCCAA+AGG | 0.590661 | 1_1:-48278220 | Msa0025270:CDS |
| GTTATGAATGGTTTGAAACG+AGG | 0.592217 | 1_1:+48279209 | None:intergenic |
| CAGTATCCACCTGGTTACGT+TGG | 0.593210 | 1_1:-48279080 | Msa0025270:CDS |
| TTCTGTGACGGTGGTTACGG+AGG | 0.596110 | 1_1:+48279258 | None:intergenic |
| GCAATCTTTGTGCCTGTGGG+AGG | 0.596806 | 1_1:-48277651 | Msa0025270:CDS |
| TTCAACAGACTTTGATACTG+CGG | 0.597441 | 1_1:+48279175 | None:intergenic |
| ACCCACTGATGCAAATGCAT+TGG | 0.597685 | 1_1:-48277449 | Msa0025270:CDS |
| GGTTCCAAGCAGCGAGATGG+AGG | 0.598270 | 1_1:-48274924 | Msa0025270:CDS |
| AATGTTATAGCAATAACCTC+CGG | 0.600808 | 1_1:-48276132 | Msa0025270:CDS |
| TGGAGGATTTGCAGATGGTG+TGG | 0.601430 | 1_1:-48277383 | Msa0025270:CDS |
| ATTTATCCTCTTCACGTAAG+CGG | 0.602234 | 1_1:+48277605 | None:intergenic |
| GATTGTGGAGTAAGTGCTAT+GGG | 0.606504 | 1_1:-48279020 | Msa0025270:CDS |
| ACTTCATCATGGCCAAAGAG+TGG | 0.606993 | 1_1:-48277419 | Msa0025270:CDS |
| TCCCTGACCCATAATGACAT+CGG | 0.610285 | 1_1:+48277719 | None:intergenic |
| CCTCATTCTGAATATCAGGT+CGG | 0.611117 | 1_1:+48275200 | None:intergenic |
| TGATTGTGGAGTAAGTGCTA+TGG | 0.611156 | 1_1:-48279021 | Msa0025270:CDS |
| CAAATACAGATATAGTTCCA+AGG | 0.611281 | 1_1:-48275874 | Msa0025270:CDS |
| TCCACCTGGTTACGTTGGAG+CGG | 0.612380 | 1_1:-48279075 | Msa0025270:CDS |
| GTAACTGAACTTGCTAATGT+CGG | 0.613762 | 1_1:-48276078 | Msa0025270:CDS |
| GTATTGCCGCTTACGTGAAG+AGG | 0.614397 | 1_1:-48277611 | Msa0025270:CDS |
| AATCAAAATGACCCAAACCA+TGG | 0.614626 | 1_1:-48279318 | Msa0025270:exon |
| CCATCATATTATAAGCTCCA+CGG | 0.615666 | 1_1:+48278235 | None:intergenic |
| CATCTGCAAATCCTCCAACC+TGG | 0.616040 | 1_1:+48277389 | None:intergenic |
| GAAAGATCATTTGCGTCACA+TGG | 0.617461 | 1_1:-48275520 | Msa0025270:intron |
| TGCAAATTCTAACCTGTGCA+CGG | 0.621586 | 1_1:+48275083 | None:intergenic |
| TCGATGCACAAATTGCATCA+CGG | 0.623238 | 1_1:+48277290 | None:intergenic |
| TTTACCTTTCCAGAAAGACC+TGG | 0.624311 | 1_1:-48275166 | Msa0025270:CDS |
| TCCAATTATTGAGTCTCCGG+CGG | 0.624802 | 1_1:-48279141 | Msa0025270:CDS |
| ATGAGACCACCACCTCCCAC+AGG | 0.625201 | 1_1:+48277639 | None:intergenic |
| TGGTTACGGAGGAGGAGGTG+AGG | 0.625554 | 1_1:+48279269 | None:intergenic |
| GATTCACTTCAGTATCCACC+TGG | 0.627666 | 1_1:-48279089 | Msa0025270:CDS |
| AGATGGTGTGGCTGTAAAAG+AGG | 0.629062 | 1_1:-48277371 | Msa0025270:CDS |
| TAGACTCCTTTAGTCCACGA+TGG | 0.634604 | 1_1:-48275126 | Msa0025270:CDS |
| GGCTGTAAAAGAGGTTGGCG+AGG | 0.636934 | 1_1:-48277362 | Msa0025270:CDS |
| GGTGTGGCTGTAAAAGAGGT+TGG | 0.638381 | 1_1:-48277367 | Msa0025270:CDS |
| TGGAAATCTGTGGAGAGGTG+GGG | 0.641456 | 1_1:-48277846 | Msa0025270:CDS |
| GCAAGTATTATGGACTCAAG+GGG | 0.645018 | 1_1:-48276158 | Msa0025270:CDS |
| GAATACCTTGATGTCAGGAG+TGG | 0.645242 | 1_1:+48278089 | None:intergenic |
| AAGAAGCGTGCTATAGAGGA+CGG | 0.645449 | 1_1:-48277771 | Msa0025270:CDS |
| GCGGTTCCTGACAGGACACG+TGG | 0.649476 | 1_1:-48279056 | Msa0025270:CDS |
| CGTGAAGAGGATAAATCCAG+AGG | 0.652583 | 1_1:-48277598 | Msa0025270:intron |
| GCTGTTAACTGTCATGCCGG+AGG | 0.655840 | 1_1:-48276037 | Msa0025270:CDS |
| ACAGGTGAAGATAATTGGGG+TGG | 0.664304 | 1_1:-48277473 | Msa0025270:intron |
| TAGTGTGGTGCATTCTGTGA+CGG | 0.664443 | 1_1:+48279246 | None:intergenic |
| AACAGACTTTGATACTGCGG+CGG | 0.668352 | 1_1:+48279178 | None:intergenic |
| TGCAGTGGAAATCTGTGGAG+AGG | 0.669367 | 1_1:-48277851 | Msa0025270:intron |
| ACATCGGGATGATCAAAAGG+AGG | 0.679406 | 1_1:+48277735 | None:intergenic |
| GGCGAAACCTTCAACCTCGG+AGG | 0.692911 | 1_1:+48279113 | None:intergenic |
| ACCGCTCCAACGTAACCAGG+TGG | 0.696827 | 1_1:+48279074 | None:intergenic |
| TTCACAGGTGAAGATAATTG+GGG | 0.702347 | 1_1:-48277476 | Msa0025270:intron |
| CAAAATGACCCAAACCATGG+AGG | 0.704518 | 1_1:-48279315 | Msa0025270:exon |
| ATAGTCATACCCAAGTCCGG+TGG | 0.715971 | 1_1:+48274886 | None:intergenic |
| GGTTAGGGTGAAGAGTAGTG+TGG | 0.726653 | 1_1:+48279231 | None:intergenic |
| GTTCCTGACAGGACACGTGG+TGG | 0.729331 | 1_1:-48279053 | Msa0025270:CDS |
| CAAGTATTATGGACTCAAGG+GGG | 0.741660 | 1_1:-48276157 | Msa0025270:CDS |
| AATAAAGAGATATTCCATCG+TGG | 0.751711 | 1_1:+48275112 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATAAATAAAAAAT+TGG | + | chr1_1:48278307-48278326 | None:intergenic | 0.0% |
| !!! | AATTTTTTATTTATAAATTA+TGG | - | chr1_1:48278306-48278325 | Msa0025270:intron | 0.0% |
| !!! | ATTTTTTATTTATAAATTAT+GGG | - | chr1_1:48278307-48278326 | Msa0025270:intron | 0.0% |
| !!! | AGTTTTCAAAAAAAAAAAAA+AGG | - | chr1_1:48275770-48275789 | Msa0025270:intron | 10.0% |
| !! | TTATAAAAATTCAAAATGAA+GGG | + | chr1_1:48276814-48276833 | None:intergenic | 10.0% |
| !! | TTTATAAAAATTCAAAATGA+AGG | + | chr1_1:48276815-48276834 | None:intergenic | 10.0% |
| !! | GTAAAACATAATATATAAAT+GGG | + | chr1_1:48277520-48277539 | None:intergenic | 10.0% |
| !! | AGTAAAACATAATATATAAA+TGG | + | chr1_1:48277521-48277540 | None:intergenic | 10.0% |
| !!! | ATTTATATATTATGTTTTAC+TGG | - | chr1_1:48277520-48277539 | Msa0025270:intron | 10.0% |
| !!! | TATGTTTAAAATTTTGAATT+TGG | - | chr1_1:48277569-48277588 | Msa0025270:intron | 10.0% |
| !!! | TTTGAAATTTTCTTTAATTA+TGG | - | chr1_1:48277647-48277666 | Msa0025270:CDS | 10.0% |
| !! | ACAAAAAAATAAATTGAATT+TGG | - | chr1_1:48277748-48277767 | Msa0025270:CDS | 10.0% |
| !!! | TTTTGTATTTGTTTTAAAAA+TGG | + | chr1_1:48278519-48278538 | None:intergenic | 10.0% |
| !!! | AAACTTTTGAATTTTAAATT+TGG | - | chr1_1:48278642-48278661 | Msa0025270:intron | 10.0% |
| !! | ACTAAATTAATATTATAAGA+TGG | + | chr1_1:48278834-48278853 | None:intergenic | 10.0% |
| !!! | GTTAATTTTTTGTTTTGTTT+TGG | - | chr1_1:48273511-48273530 | Msa0025270:intron | 15.0% |
| !! | ATCAAAAAATGATAATAAAC+AGG | + | chr1_1:48276499-48276518 | None:intergenic | 15.0% |
| !!! | TATTTTATTATTCATTGTGT+TGG | - | chr1_1:48276643-48276662 | Msa0025270:intron | 15.0% |
| !!! | GTTATTATGTTTTATACTAT+CGG | - | chr1_1:48277545-48277564 | Msa0025270:intron | 15.0% |
| !! | ATAAAAATGTCTGATTAAAA+TGG | - | chr1_1:48277619-48277638 | Msa0025270:CDS | 15.0% |
| !! | TAAAAATGTCTGATTAAAAT+GGG | - | chr1_1:48277620-48277639 | Msa0025270:CDS | 15.0% |
| !!! | AAATTGAATTTGGATTTTTT+TGG | - | chr1_1:48277758-48277777 | Msa0025270:CDS | 15.0% |
| !!! | TTTTCGATATAAGAAATATT+TGG | + | chr1_1:48278218-48278237 | None:intergenic | 15.0% |
| !!! | AAATTTTTCTAAAAAACATC+TGG | + | chr1_1:48278379-48278398 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTCCAAAACAAA+TGG | - | chr1_1:48278477-48278496 | Msa0025270:intron | 15.0% |
| !! | ATAATAAAACATTCATTGTT+TGG | + | chr1_1:48278967-48278986 | None:intergenic | 15.0% |
| !! | TTGTTAATATTCATAATTGA+GGG | - | chr1_1:48279336-48279355 | Msa0025270:five_prime_UTR | 15.0% |
| !!! | TTATCATATTTTAATTCAAC+TGG | + | chr1_1:48279382-48279401 | None:intergenic | 15.0% |
| !! | AATTCATAAGTTCTTACTAA+CGG | - | chr1_1:48273663-48273682 | Msa0025270:intron | 20.0% |
| !! | TATTATTCATAAACTTGTCA+AGG | + | chr1_1:48273725-48273744 | None:intergenic | 20.0% |
| !! | AATTCAAAAATTGTGTGTAT+TGG | + | chr1_1:48273800-48273819 | None:intergenic | 20.0% |
| !!! | CACACAATTTTTGAATTTTT+TGG | - | chr1_1:48273803-48273822 | Msa0025270:intron | 20.0% |
| !!! | ATATGTTGTTTATGAAATTG+TGG | - | chr1_1:48273970-48273989 | Msa0025270:intron | 20.0% |
| !! | ATTACACAACAAAAAAAGTT+CGG | + | chr1_1:48275410-48275429 | None:intergenic | 20.0% |
| !! | AGAATTATTTAATGCTTCAT+TGG | - | chr1_1:48275433-48275452 | Msa0025270:intron | 20.0% |
| !!! | TTCATTGGTTTATATATACT+TGG | - | chr1_1:48275448-48275467 | Msa0025270:intron | 20.0% |
| !!! | AAAAAAAAATCTGGAGTTAA+CGG | + | chr1_1:48275580-48275599 | None:intergenic | 20.0% |
| !! | CCAGATAAAAAAAAAAAATC+TGG | + | chr1_1:48275589-48275608 | None:intergenic | 20.0% |
| !!! | CCAGATTTTTTTTTTTTATC+TGG | - | chr1_1:48275586-48275605 | Msa0025270:CDS | 20.0% |
| !! | TGGTACAATTATATGAATTT+GGG | - | chr1_1:48275800-48275819 | Msa0025270:intron | 20.0% |
| !!! | ATTTTACTCTGTACTTTTAA+AGG | - | chr1_1:48275828-48275847 | Msa0025270:intron | 20.0% |
| !! | TTTGTACATTAAATGGAAAT+TGG | - | chr1_1:48275986-48276005 | Msa0025270:intron | 20.0% |
| !!! | TAATAAAATATTATTGGCCT+TGG | + | chr1_1:48276633-48276652 | None:intergenic | 20.0% |
| !! | ATTTAGTACTTAACTTTGTT+TGG | + | chr1_1:48276867-48276886 | None:intergenic | 20.0% |
| !! | TTTCAAAACAAAGTTAAACT+TGG | + | chr1_1:48277050-48277069 | None:intergenic | 20.0% |
| !!! | TTTTGAAAACATTTTTCAGA+TGG | - | chr1_1:48277062-48277081 | Msa0025270:intron | 20.0% |
| !!! | TTTGAAAACATTTTTCAGAT+GGG | - | chr1_1:48277063-48277082 | Msa0025270:intron | 20.0% |
| !!! | AATACTGCATGTTTTTTTTT+TGG | - | chr1_1:48277252-48277271 | Msa0025270:intron | 20.0% |
| !!! | ATGCATTGATTGATTATTTT+AGG | - | chr1_1:48277462-48277481 | Msa0025270:CDS | 20.0% |
| !!! | TAGAGTTATGTTTATTTTAG+AGG | - | chr1_1:48277807-48277826 | Msa0025270:CDS | 20.0% |
| !! | TATTACATAACTTCAAAGAT+TGG | - | chr1_1:48277840-48277859 | Msa0025270:CDS | 20.0% |
| !! | ATTACATAACTTCAAAGATT+GGG | - | chr1_1:48277841-48277860 | Msa0025270:CDS | 20.0% |
| !! | CAAATTAGGTAAATAAAAAG+TGG | - | chr1_1:48278068-48278087 | Msa0025270:intron | 20.0% |
| !! | TCTTCAAAAGCTAATTAAAA+TGG | + | chr1_1:48278248-48278267 | None:intergenic | 20.0% |
| !! | AAAAATGGTTATCTAACATA+GGG | + | chr1_1:48278504-48278523 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTATCTAACAT+AGG | + | chr1_1:48278505-48278524 | None:intergenic | 20.0% |
| !!! | TTGTTAGGTTTTTGTTAAAA+TGG | + | chr1_1:48278926-48278945 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTGGTTTTTTAA+GGG | + | chr1_1:48278949-48278968 | None:intergenic | 20.0% |
| !! | CTTGTTAATATTCATAATTG+AGG | - | chr1_1:48279335-48279354 | Msa0025270:five_prime_UTR | 20.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr1_1:48273599-48273618 | None:intergenic | 25.0% |
| !!! | ATTTTTGAATTTTTTGGCAC+TGG | - | chr1_1:48273809-48273828 | Msa0025270:intron | 25.0% |
| !! | GAAATTGTGAATTTTGTGAT+AGG | - | chr1_1:48274015-48274034 | Msa0025270:intron | 25.0% |
| ! | TCTGCAAACAATAACAAATT+TGG | - | chr1_1:48275326-48275345 | Msa0025270:intron | 25.0% |
| !! | ACAAATTTGGAATTGATTGA+TGG | - | chr1_1:48275339-48275358 | Msa0025270:intron | 25.0% |
| !!! | TTTTTTACCTCTCTGTATTA+TGG | - | chr1_1:48275483-48275502 | Msa0025270:intron | 25.0% |
| !! | AAAAAAAATCTGGAGTTAAC+GGG | + | chr1_1:48275579-48275598 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGGATGCATG+TGG | - | chr1_1:48275780-48275799 | Msa0025270:intron | 25.0% |
| ! | GTGGTACAATTATATGAATT+TGG | - | chr1_1:48275799-48275818 | Msa0025270:intron | 25.0% |
| ! | AAAATAATTCCCAATTCTCA+CGG | + | chr1_1:48275946-48275965 | None:intergenic | 25.0% |
| ! | TTAATGTACAAAACATTCGA+AGG | + | chr1_1:48275978-48275997 | None:intergenic | 25.0% |
| !! | CGAATGTTTTGTACATTAAA+TGG | - | chr1_1:48275979-48275998 | Msa0025270:intron | 25.0% |
| ! | ACATGAATTTCGATAAACTT+AGG | - | chr1_1:48276185-48276204 | Msa0025270:CDS | 25.0% |
| !!! | TTTCAAACAGTTTTGTGAAT+TGG | - | chr1_1:48276285-48276304 | Msa0025270:intron | 25.0% |
| !!! | ACTGTTATTTTTTCCAAAAC+AGG | - | chr1_1:48276327-48276346 | Msa0025270:intron | 25.0% |
| !!! | CTGTTATTTTTTCCAAAACA+GGG | - | chr1_1:48276328-48276347 | Msa0025270:intron | 25.0% |
| !!! | TGCATTTCTTTTAGTTCTAA+GGG | + | chr1_1:48276692-48276711 | None:intergenic | 25.0% |
| ! | ACAAGACCATTAAATCAAAT+GGG | + | chr1_1:48276963-48276982 | None:intergenic | 25.0% |
| ! | ACGTGTTTAGTAAACATTAT+CGG | + | chr1_1:48276997-48277016 | None:intergenic | 25.0% |
| ! | AAATGTATTAGTTGGAATTC+AGG | - | chr1_1:48277344-48277363 | Msa0025270:CDS | 25.0% |
| ! | CACTTGTCATAAAAAATTAC+TGG | - | chr1_1:48277485-48277504 | Msa0025270:intron | 25.0% |
| ! | TTGTCATAAAAAATTACTGG+CGG | - | chr1_1:48277488-48277507 | Msa0025270:intron | 25.0% |
| ! | AATTTGGAAAATTGTGTTGA+GGG | - | chr1_1:48277585-48277604 | Msa0025270:intron | 25.0% |
| !!! | TTGGATTTTTTTGGTTGTTT+AGG | - | chr1_1:48277767-48277786 | Msa0025270:CDS | 25.0% |
| !!! | TGGATTTTTTTGGTTGTTTA+GGG | - | chr1_1:48277768-48277787 | Msa0025270:CDS | 25.0% |
| ! | CTTGGAGAAAAAAATTATGA+TGG | + | chr1_1:48278423-48278442 | None:intergenic | 25.0% |
| ! | CGAGTAATAAAGAAATTTGA+AGG | - | chr1_1:48278889-48278908 | Msa0025270:intron | 25.0% |
| !!! | GTTTGGTTTTTGGTTTTTTA+AGG | + | chr1_1:48278950-48278969 | None:intergenic | 25.0% |
| !!! | AACATTCATTGTTTGGTTTT+TGG | + | chr1_1:48278960-48278979 | None:intergenic | 25.0% |
| ! | TAAATGGAAATTAGATCGAA+TGG | + | chr1_1:48278997-48279016 | None:intergenic | 25.0% |
| !! | TTTAGAATGGATGGTATAAA+TGG | + | chr1_1:48279013-48279032 | None:intergenic | 25.0% |
| !!! | AACTTGTGAGTATTTTAGAA+TGG | + | chr1_1:48279026-48279045 | None:intergenic | 25.0% |
| ! | ACATTGTTGGACAATAAATA+TGG | - | chr1_1:48279119-48279138 | Msa0025270:CDS | 25.0% |
| ! | TTATGAATGGTTTGAAACGA+GGG | + | chr1_1:48273082-48273101 | None:intergenic | 30.0% |
| AGTATCAAAGTCTGTTGAAA+TGG | - | chr1_1:48273118-48273137 | Msa0025270:three_prime_UTR | 30.0% | |
| GACTAGTATACTTACTTCTA+AGG | - | chr1_1:48273298-48273317 | Msa0025270:intron | 30.0% | |
| !! | AAAGACTTGGTGTTAATGTT+TGG | - | chr1_1:48273372-48273391 | Msa0025270:intron | 30.0% |
| ! | GATTGATTGATGATACTTAC+AGG | + | chr1_1:48273419-48273438 | None:intergenic | 30.0% |
| ATTCAATATGTCTCTCATGT+CGG | - | chr1_1:48273542-48273561 | Msa0025270:intron | 30.0% | |
| ! | TAAACTTCCAAAGGATGTTT+TGG | - | chr1_1:48274078-48274097 | Msa0025270:intron | 30.0% |
| TAAATGAATACCTTGATGTC+AGG | + | chr1_1:48274208-48274227 | None:intergenic | 30.0% | |
| TAACTAAAACTCATCAAACG+TGG | + | chr1_1:48274261-48274280 | None:intergenic | 30.0% | |
| ! | GAAGCAAACAAAGTATTATC+TGG | + | chr1_1:48274353-48274372 | None:intergenic | 30.0% |
| !!! | GTTATTTTTTACCTTTGCAG+TGG | - | chr1_1:48274423-48274442 | Msa0025270:intron | 30.0% |
| ! | TTGACATTTTGAATGTTCAC+AGG | - | chr1_1:48274798-48274817 | Msa0025270:intron | 30.0% |
| CTAAATGCAAACTTTCACAA+GGG | + | chr1_1:48275044-48275063 | None:intergenic | 30.0% | |
| TCTAAATGCAAACTTTCACA+AGG | + | chr1_1:48275045-48275064 | None:intergenic | 30.0% | |
| ! | AAGTTTGCATTTAGAATCTC+TGG | - | chr1_1:48275050-48275069 | Msa0025270:intron | 30.0% |
| !!! | TATACTCATTGTTTTGATGC+TGG | - | chr1_1:48275192-48275211 | Msa0025270:CDS | 30.0% |
| AAACTGTCAAGAAAGATAGA+TGG | + | chr1_1:48275233-48275252 | None:intergenic | 30.0% | |
| TAAGTGCAGAGTAATCAAAT+TGG | - | chr1_1:48275270-48275289 | Msa0025270:intron | 30.0% | |
| ! | AATTTGGAATTGATTGATGG+AGG | - | chr1_1:48275342-48275361 | Msa0025270:intron | 30.0% |
| CAACAAAAAAAGTTCGGATT+TGG | + | chr1_1:48275404-48275423 | None:intergenic | 30.0% | |
| GGGTTAAATAGCAATGTAAT+TGG | + | chr1_1:48275559-48275578 | None:intergenic | 30.0% | |
| ATCATCCTGTTGTGATTTAA+TGG | + | chr1_1:48275614-48275633 | None:intergenic | 30.0% | |
| AATCACAACAGGATGATTAT+AGG | - | chr1_1:48275617-48275636 | Msa0025270:CDS | 30.0% | |
| AATGTTATAGCAATAACCTC+CGG | - | chr1_1:48276157-48276176 | Msa0025270:CDS | 30.0% | |
| ! | AACTATGAAAAACCCTGTTT+TGG | + | chr1_1:48276343-48276362 | None:intergenic | 30.0% |
| CAAATACAGATATAGTTCCA+AGG | - | chr1_1:48276415-48276434 | Msa0025270:intron | 30.0% | |
| GATAATAAACAGGAAAGACA+CGG | + | chr1_1:48276489-48276508 | None:intergenic | 30.0% | |
| !!! | CTGCATTTCTTTTAGTTCTA+AGG | + | chr1_1:48276693-48276712 | None:intergenic | 30.0% |
| CTTAGAACTAAAAGAAATGC+AGG | - | chr1_1:48276691-48276710 | Msa0025270:intron | 30.0% | |
| ! | TAGTACTTAACTTTGTTTGG+CGG | + | chr1_1:48276864-48276883 | None:intergenic | 30.0% |
| ATAAAGCCCATAATATGAGA+CGG | - | chr1_1:48276905-48276924 | Msa0025270:intron | 30.0% | |
| CAAGACCATTAAATCAAATG+GGG | + | chr1_1:48276962-48276981 | None:intergenic | 30.0% | |
| GACAAGACCATTAAATCAAA+TGG | + | chr1_1:48276964-48276983 | None:intergenic | 30.0% | |
| ACTTGGTCAAATACAAAAAC+AGG | + | chr1_1:48277033-48277052 | None:intergenic | 30.0% | |
| ! | AAAAATTTCATCAAAGCACC+AGG | + | chr1_1:48277144-48277163 | None:intergenic | 30.0% |
| AATAAAGAGATATTCCATCG+TGG | + | chr1_1:48277180-48277199 | None:intergenic | 30.0% | |
| GCATTAAAAGCTTGAAGAAA+AGG | + | chr1_1:48277446-48277465 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGTGTTG+AGG | - | chr1_1:48277584-48277603 | Msa0025270:intron | 30.0% | |
| ! | AACTACCACATTTTATACGA+TGG | - | chr1_1:48277920-48277939 | Msa0025270:intron | 30.0% |
| TTGTTCCATCGTATAAAATG+TGG | + | chr1_1:48277928-48277947 | None:intergenic | 30.0% | |
| TGCAAAGTAATACGAGAATT+AGG | - | chr1_1:48278116-48278135 | Msa0025270:CDS | 30.0% | |
| GCAAAGTAATACGAGAATTA+GGG | - | chr1_1:48278117-48278136 | Msa0025270:CDS | 30.0% | |
| TCAACTTGAAGAATATGAGA+TGG | + | chr1_1:48278865-48278884 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTAAGGGTTGTT+AGG | + | chr1_1:48278941-48278960 | None:intergenic | 30.0% |
| !!! | TGTGAGTATTTTAGAATGGA+TGG | + | chr1_1:48279022-48279041 | None:intergenic | 30.0% |
| ! | TTTTCATAGGTTCTCTCAAT+TGG | - | chr1_1:48279079-48279098 | Msa0025270:CDS | 30.0% |
| AATCAAAATGACCCAAACCA+TGG | - | chr1_1:48272971-48272990 | Msa0025270:three_prime_UTR | 35.0% | |
| ! | GTTATGAATGGTTTGAAACG+AGG | + | chr1_1:48273083-48273102 | None:intergenic | 35.0% |
| TTCAACAGACTTTGATACTG+CGG | + | chr1_1:48273117-48273136 | None:intergenic | 35.0% | |
| TGTTCCAATTATTGAGTCTC+CGG | - | chr1_1:48273145-48273164 | Msa0025270:three_prime_UTR | 35.0% | |
| TGTTGAATCTCCTCTTGAAT+TGG | - | chr1_1:48273334-48273353 | Msa0025270:intron | 35.0% | |
| ! | CTTGTTCTTGTTCTTGTTGT+TGG | - | chr1_1:48273454-48273473 | Msa0025270:intron | 35.0% |
| ACAAAGAATGCTGTAATTGC+AGG | - | chr1_1:48273862-48273881 | Msa0025270:intron | 35.0% | |
| CAAAGAATGCTGTAATTGCA+GGG | - | chr1_1:48273863-48273882 | Msa0025270:intron | 35.0% | |
| !! | TGTGTTGATCATTTTGCTTG+AGG | - | chr1_1:48273947-48273966 | Msa0025270:intron | 35.0% |
| ! | GTATTCTCATTTAAGATCCG+TGG | - | chr1_1:48274037-48274056 | Msa0025270:intron | 35.0% |
| CCATCATATTATAAGCTCCA+CGG | + | chr1_1:48274057-48274076 | None:intergenic | 35.0% | |
| TATGATGGCTAAACTTCCAA+AGG | - | chr1_1:48274069-48274088 | Msa0025270:intron | 35.0% | |
| !!! | CAAAGGATGTTTTGGAGAAA+GGG | - | chr1_1:48274086-48274105 | Msa0025270:intron | 35.0% |
| !!! | AAAGGATGTTTTGGAGAAAG+GGG | - | chr1_1:48274087-48274106 | Msa0025270:intron | 35.0% |
| CATCATAGGAATCTCCAATA+AGG | + | chr1_1:48274481-48274500 | None:intergenic | 35.0% | |
| ATATGCTTGTGCTTCATCAT+AGG | + | chr1_1:48274495-48274514 | None:intergenic | 35.0% | |
| ATTTATCCTCTTCACGTAAG+CGG | + | chr1_1:48274687-48274706 | None:intergenic | 35.0% | |
| TGTTCACAGGTGAAGATAAT+TGG | - | chr1_1:48274811-48274830 | Msa0025270:three_prime_UTR | 35.0% | |
| GTTCACAGGTGAAGATAATT+GGG | - | chr1_1:48274812-48274831 | Msa0025270:three_prime_UTR | 35.0% | |
| TTCACAGGTGAAGATAATTG+GGG | - | chr1_1:48274813-48274832 | Msa0025270:three_prime_UTR | 35.0% | |
| ! | TGCAATTTGTGCATCGATAA+AGG | - | chr1_1:48275005-48275024 | Msa0025270:intron | 35.0% |
| GAAGTAGTTGCCATAGATAA+TGG | + | chr1_1:48275109-48275128 | None:intergenic | 35.0% | |
| AATCTAGCCATAATACAGAG+AGG | + | chr1_1:48275493-48275512 | None:intergenic | 35.0% | |
| TATGGCTAGATTTAGTGAAG+CGG | - | chr1_1:48275501-48275520 | Msa0025270:intron | 35.0% | |
| CTCAAATAGAGCTTCTACAA+TGG | + | chr1_1:48275863-48275882 | None:intergenic | 35.0% | |
| ACAAACAAAACAGCTCCATT+CGG | + | chr1_1:48275921-48275940 | None:intergenic | 35.0% | |
| TTGTTTGTATCCGTGAGAAT+TGG | - | chr1_1:48275933-48275952 | Msa0025270:intron | 35.0% | |
| TGTTTGTATCCGTGAGAATT+GGG | - | chr1_1:48275934-48275953 | Msa0025270:intron | 35.0% | |
| ! | GATTATCTAGGACTTGACAT+TGG | - | chr1_1:48276020-48276039 | Msa0025270:CDS | 35.0% |
| AGGACATGTTTGAGGAAAAA+AGG | - | chr1_1:48276056-48276075 | Msa0025270:CDS | 35.0% | |
| ! | TGAGGAAAAAAGGAGCATAT+TGG | - | chr1_1:48276066-48276085 | Msa0025270:CDS | 35.0% |
| GAAGCATACTGCAAGTATTA+TGG | - | chr1_1:48276121-48276140 | Msa0025270:CDS | 35.0% | |
| TGCAAGTATTATGGACTCAA+GGG | - | chr1_1:48276130-48276149 | Msa0025270:CDS | 35.0% | |
| ATCGAAATTCATGTTTGCTC+CGG | + | chr1_1:48276179-48276198 | None:intergenic | 35.0% | |
| !! | GTAACTGAACTTGCTAATGT+CGG | - | chr1_1:48276211-48276230 | Msa0025270:CDS | 35.0% |
| AGAAAGCTGTTGTTCTTTAC+AGG | - | chr1_1:48276438-48276457 | Msa0025270:intron | 35.0% | |
| GATGTCAATATTCTAAGCAG+TGG | + | chr1_1:48276535-48276554 | None:intergenic | 35.0% | |
| AAAAGAAATGCAGGAGAGAA+TGG | - | chr1_1:48276700-48276719 | Msa0025270:intron | 35.0% | |
| TACTCTCCGTCTCATATTAT+GGG | + | chr1_1:48276914-48276933 | None:intergenic | 35.0% | |
| TTACTCTCCGTCTCATATTA+TGG | + | chr1_1:48276915-48276934 | None:intergenic | 35.0% | |
| AGAACCTCATTCTGAATATC+AGG | + | chr1_1:48277096-48277115 | None:intergenic | 35.0% | |
| !! | AACATGCAGTATTTGACTTG+AGG | + | chr1_1:48277245-48277264 | None:intergenic | 35.0% |
| ! | CATTAGATTGCATTGGTCAA+CGG | + | chr1_1:48277286-48277305 | None:intergenic | 35.0% |
| TACAAGCCATTAGATTGCAT+TGG | + | chr1_1:48277293-48277312 | None:intergenic | 35.0% | |
| ATTATAGTCATACCCAAGTC+CGG | + | chr1_1:48277409-48277428 | None:intergenic | 35.0% | |
| ACATAACTTCAAAGATTGGG+AGG | - | chr1_1:48277844-48277863 | Msa0025270:CDS | 35.0% | |
| TCAAAATGTGACATTGTTGG+AGG | + | chr1_1:48277893-48277912 | None:intergenic | 35.0% | |
| CTGTCAAAATGTGACATTGT+TGG | + | chr1_1:48277896-48277915 | None:intergenic | 35.0% | |
| !! | CAACAATGTCACATTTTGAC+AGG | - | chr1_1:48277894-48277913 | Msa0025270:intron | 35.0% |
| TGTTCTATGAAATGCAAGTG+AGG | - | chr1_1:48278039-48278058 | Msa0025270:intron | 35.0% | |
| GTTCTATGAAATGCAAGTGA+GGG | - | chr1_1:48278040-48278059 | Msa0025270:intron | 35.0% | |
| ! | AACATAGGGTCCATTTGTTT+TGG | + | chr1_1:48278490-48278509 | None:intergenic | 35.0% |
| TCGATCATTCATCTAACAAG+AGG | - | chr1_1:48278774-48278793 | Msa0025270:intron | 35.0% | |
| CGATCATTCATCTAACAAGA+GGG | - | chr1_1:48278775-48278794 | Msa0025270:intron | 35.0% | |
| ! | ACTTTTGTACGAGACATTGT+TGG | - | chr1_1:48279106-48279125 | Msa0025270:CDS | 35.0% |
| CAGAAATTTGGTCAAGTAGA+AGG | + | chr1_1:48279194-48279213 | None:intergenic | 35.0% | |
| CTACTTGACCAAATTTCTGA+TGG | - | chr1_1:48279195-48279214 | Msa0025270:CDS | 35.0% | |
| CATTACGACCATCAGAAATT+TGG | + | chr1_1:48279206-48279225 | None:intergenic | 35.0% | |
| CAAATTTCTGATGGTCGTAA+TGG | - | chr1_1:48279204-48279223 | Msa0025270:CDS | 35.0% | |
| ! | CGTAATGGAAATCGAATATC+AGG | - | chr1_1:48279219-48279238 | Msa0025270:CDS | 35.0% |
| ! | ATGGTTTGAAACGAGGGTTA+GGG | + | chr1_1:48273076-48273095 | None:intergenic | 40.0% |
| ! | AATGGTTTGAAACGAGGGTT+AGG | + | chr1_1:48273077-48273096 | None:intergenic | 40.0% |
| TGATTGTGGAGTAAGTGCTA+TGG | - | chr1_1:48273268-48273287 | Msa0025270:intron | 40.0% | |
| GATTGTGGAGTAAGTGCTAT+GGG | - | chr1_1:48273269-48273288 | Msa0025270:intron | 40.0% | |
| CCAAGTCTTTCAGAAAGCTT+TGG | + | chr1_1:48273362-48273381 | None:intergenic | 40.0% | |
| ! | CCAAAGCTTTCTGAAAGACT+TGG | - | chr1_1:48273359-48273378 | Msa0025270:intron | 40.0% |
| CCGTGGAGCTTATAATATGA+TGG | - | chr1_1:48274054-48274073 | Msa0025270:intron | 40.0% | |
| CCTTTCTCCAAAACATCCTT+TGG | + | chr1_1:48274088-48274107 | None:intergenic | 40.0% | |
| !!! | CCAAAGGATGTTTTGGAGAA+AGG | - | chr1_1:48274085-48274104 | Msa0025270:intron | 40.0% |
| ATTCAATCTCTTGGCAGACA+TGG | + | chr1_1:48274152-48274171 | None:intergenic | 40.0% | |
| GGTAACTGGCATTGCAATAA+CGG | + | chr1_1:48274182-48274201 | None:intergenic | 40.0% | |
| AATCACTCAAGTTTGAACCC+CGG | - | chr1_1:48274297-48274316 | Msa0025270:intron | 40.0% | |
| TAGCTAATGTTTGTCTCAGC+CGG | + | chr1_1:48274319-48274338 | None:intergenic | 40.0% | |
| ATGACATCGGGATGATCAAA+AGG | + | chr1_1:48274560-48274579 | None:intergenic | 40.0% | |
| TGATCATCCCGATGTCATTA+TGG | - | chr1_1:48274562-48274581 | Msa0025270:intron | 40.0% | |
| GATCATCCCGATGTCATTAT+GGG | - | chr1_1:48274563-48274582 | Msa0025270:intron | 40.0% | |
| ! | AATCCAGAGGTTTGTTTGCA+TGG | - | chr1_1:48274704-48274723 | Msa0025270:intron | 40.0% |
| GTGCAATGGAAAAACCTATC+AGG | + | chr1_1:48274736-48274755 | None:intergenic | 40.0% | |
| CAACTCTTCCAAGTGAACAA+AGG | + | chr1_1:48274762-48274781 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGTCACTTCATCA+TGG | - | chr1_1:48274859-48274878 | Msa0025270:CDS | 40.0% |
| TCGATGCACAAATTGCATCA+CGG | + | chr1_1:48275002-48275021 | None:intergenic | 40.0% | |
| GCAAACTTTCACAAGGGAAA+GGG | + | chr1_1:48275038-48275057 | None:intergenic | 40.0% | |
| TGCAAACTTTCACAAGGGAA+AGG | + | chr1_1:48275039-48275058 | None:intergenic | 40.0% | |
| ACACACACCACCATTATCTA+TGG | - | chr1_1:48275096-48275115 | Msa0025270:CDS | 40.0% | |
| ! | GTAGTTGCCATAGATAATGG+TGG | + | chr1_1:48275106-48275125 | None:intergenic | 40.0% |
| ATGGCTAGATTTAGTGAAGC+GGG | - | chr1_1:48275502-48275521 | Msa0025270:intron | 40.0% | |
| !! | TGGTGCCATTAAATCACAAC+AGG | - | chr1_1:48275606-48275625 | Msa0025270:CDS | 40.0% |
| ATTATAGGTTCGATTCCCCA+CGG | - | chr1_1:48275632-48275651 | Msa0025270:intron | 40.0% | |
| AGTCCATACAGAGAAAACTC+TGG | - | chr1_1:48275673-48275692 | Msa0025270:intron | 40.0% | |
| ! | AAGCCAGAGTTTTCTCTGTA+TGG | + | chr1_1:48275679-48275698 | None:intergenic | 40.0% |
| !! | GAAAGCACTGCAGATTATCT+AGG | - | chr1_1:48276008-48276027 | Msa0025270:CDS | 40.0% |
| ACATTGGTAAACCTTGTTGC+AGG | - | chr1_1:48276036-48276055 | Msa0025270:CDS | 40.0% | |
| CTGCAAGTATTATGGACTCA+AGG | - | chr1_1:48276129-48276148 | Msa0025270:CDS | 40.0% | |
| GCAAGTATTATGGACTCAAG+GGG | - | chr1_1:48276131-48276150 | Msa0025270:CDS | 40.0% | |
| CAAGTATTATGGACTCAAGG+GGG | - | chr1_1:48276132-48276151 | Msa0025270:CDS | 40.0% | |
| ! | CAAAACTGTTTGAAACTGCC+AGG | + | chr1_1:48276280-48276299 | None:intergenic | 40.0% |
| GAACTGAATTTCTTCTGACC+TGG | - | chr1_1:48276363-48276382 | Msa0025270:intron | 40.0% | |
| AAGAACAACAGCTTTCTCCT+TGG | + | chr1_1:48276435-48276454 | None:intergenic | 40.0% | |
| GACAACTAAGTGTTATGCCA+AGG | - | chr1_1:48276613-48276632 | Msa0025270:intron | 40.0% | |
| GAAAGATCATTTGCGTCACA+TGG | - | chr1_1:48276769-48276788 | Msa0025270:intron | 40.0% | |
| ! | CTTAACTTTGTTTGGCGGTT+GGG | + | chr1_1:48276859-48276878 | None:intergenic | 40.0% |
| ! | ACTTAACTTTGTTTGGCGGT+TGG | + | chr1_1:48276860-48276879 | None:intergenic | 40.0% |
| ! | AGCTGCCCCATTTGATTTAA+TGG | - | chr1_1:48276954-48276973 | Msa0025270:intron | 40.0% |
| CTCATTCTGAATATCAGGTC+GGG | + | chr1_1:48277091-48277110 | None:intergenic | 40.0% | |
| CCTCATTCTGAATATCAGGT+CGG | + | chr1_1:48277092-48277111 | None:intergenic | 40.0% | |
| TTTACCTTTCCAGAAAGACC+TGG | - | chr1_1:48277123-48277142 | Msa0025270:intron | 40.0% | |
| ! | GATATTCCATCGTGGACTAA+AGG | + | chr1_1:48277172-48277191 | None:intergenic | 40.0% |
| TTTATTCCATTACCGTGCAC+AGG | - | chr1_1:48277194-48277213 | Msa0025270:intron | 40.0% | |
| TGCAAATTCTAACCTGTGCA+CGG | + | chr1_1:48277209-48277228 | None:intergenic | 40.0% | |
| CGTTGACCAATGCAATCTAA+TGG | - | chr1_1:48277284-48277303 | Msa0025270:intron | 40.0% | |
| GCTGGAGCAAATGTATTAGT+TGG | - | chr1_1:48277336-48277355 | Msa0025270:CDS | 40.0% | |
| CAAAGATTGGGAGGAAGAAA+TGG | - | chr1_1:48277853-48277872 | Msa0025270:intron | 40.0% | |
| !! | CAATGTCACATTTTGACAGG+AGG | - | chr1_1:48277897-48277916 | Msa0025270:intron | 40.0% |
| TATGAAATGCAAGTGAGGGA+CGG | - | chr1_1:48278044-48278063 | Msa0025270:intron | 40.0% | |
| CTCAAGTGTAAGAGCTTTCT+TGG | + | chr1_1:48278441-48278460 | None:intergenic | 40.0% | |
| ! | TCCCTATGTTGATTGTGTCA+CGG | - | chr1_1:48278614-48278633 | Msa0025270:intron | 40.0% |
| GTGTATGCGAAAAGATATGC+CGG | - | chr1_1:48278664-48278683 | Msa0025270:intron | 40.0% | |
| CAAGTGACATCTAGAGAAAC+CGG | + | chr1_1:48278686-48278705 | None:intergenic | 40.0% | |
| TCATAGGTTCTCTCAATTGG+AGG | - | chr1_1:48279082-48279101 | Msa0025270:CDS | 40.0% | |
| CTGGAAGAAGATTGTTCAAG+TGG | + | chr1_1:48279363-48279382 | None:intergenic | 40.0% | |
| CAAAATGACCCAAACCATGG+AGG | - | chr1_1:48272974-48272993 | Msa0025270:three_prime_UTR | 45.0% | |
| TAGTGTGGTGCATTCTGTGA+CGG | + | chr1_1:48273046-48273065 | None:intergenic | 45.0% | |
| AACAGACTTTGATACTGCGG+CGG | + | chr1_1:48273114-48273133 | None:intergenic | 45.0% | |
| TCCAATTATTGAGTCTCCGG+CGG | - | chr1_1:48273148-48273167 | Msa0025270:three_prime_UTR | 45.0% | |
| GGTGGATACTGAAGTGAATC+CGG | + | chr1_1:48273200-48273219 | None:intergenic | 45.0% | |
| GATTCACTTCAGTATCCACC+TGG | - | chr1_1:48273200-48273219 | Msa0025270:three_prime_UTR | 45.0% | |
| TAAGCTGACGTCAGAGACTA+AGG | - | chr1_1:48273565-48273584 | Msa0025270:intron | 45.0% | |
| AAGCTGACGTCAGAGACTAA+GGG | - | chr1_1:48273566-48273585 | Msa0025270:intron | 45.0% | |
| ACGTCAGAGACTAAGGGTAA+GGG | - | chr1_1:48273572-48273591 | Msa0025270:intron | 45.0% | |
| TCAGCTGGAAATCATGCTCA+AGG | - | chr1_1:48274121-48274140 | Msa0025270:intron | 45.0% | |
| GGCGTTGCAATTCAATCTCT+TGG | + | chr1_1:48274161-48274180 | None:intergenic | 45.0% | |
| TTGATGTCAGGAGTGGTAAC+TGG | + | chr1_1:48274196-48274215 | None:intergenic | 45.0% | |
| AGTTACCACTCCTGACATCA+AGG | - | chr1_1:48274195-48274214 | Msa0025270:intron | 45.0% | |
| GAATACCTTGATGTCAGGAG+TGG | + | chr1_1:48274203-48274222 | None:intergenic | 45.0% | |
| AGCTAATGTTTGTCTCAGCC+GGG | + | chr1_1:48274318-48274337 | None:intergenic | 45.0% | |
| ACCTTTGCAGTGGAAATCTG+TGG | - | chr1_1:48274433-48274452 | Msa0025270:intron | 45.0% | |
| TCCACAGATTTCCACTGCAA+AGG | + | chr1_1:48274437-48274456 | None:intergenic | 45.0% | |
| ! | TGCTAAGAAGCGTGCTATAG+AGG | - | chr1_1:48274514-48274533 | Msa0025270:intron | 45.0% |
| ! | AAGAAGCGTGCTATAGAGGA+CGG | - | chr1_1:48274518-48274537 | Msa0025270:intron | 45.0% |
| ACATCGGGATGATCAAAAGG+AGG | + | chr1_1:48274557-48274576 | None:intergenic | 45.0% | |
| TCCCTGACCCATAATGACAT+CGG | + | chr1_1:48274573-48274592 | None:intergenic | 45.0% | |
| ATTATGGGTCAGGGAACTGT+CGG | - | chr1_1:48274578-48274597 | Msa0025270:intron | 45.0% | |
| GGCACAAAGATTGCATGAAC+TGG | + | chr1_1:48274632-48274651 | None:intergenic | 45.0% | |
| TCATGCAATCTTTGTGCCTG+TGG | - | chr1_1:48274634-48274653 | Msa0025270:intron | 45.0% | |
| CATGCAATCTTTGTGCCTGT+GGG | - | chr1_1:48274635-48274654 | Msa0025270:intron | 45.0% | |
| CGTGAAGAGGATAAATCCAG+AGG | - | chr1_1:48274691-48274710 | Msa0025270:intron | 45.0% | |
| ACACCATGCAAACAAACCTC+TGG | + | chr1_1:48274710-48274729 | None:intergenic | 45.0% | |
| !! | TTGCATGGTGTTGTCCTGAT+AGG | - | chr1_1:48274719-48274738 | Msa0025270:intron | 45.0% |
| ACAGGTGAAGATAATTGGGG+TGG | - | chr1_1:48274816-48274835 | Msa0025270:three_prime_UTR | 45.0% | |
| ACCCACTGATGCAAATGCAT+TGG | - | chr1_1:48274840-48274859 | Msa0025270:exon | 45.0% | |
| GCCAATGCATTTGCATCAGT+GGG | + | chr1_1:48274844-48274863 | None:intergenic | 45.0% | |
| AGCCAATGCATTTGCATCAG+TGG | + | chr1_1:48274845-48274864 | None:intergenic | 45.0% | |
| ACTTCATCATGGCCAAAGAG+TGG | - | chr1_1:48274870-48274889 | Msa0025270:CDS | 45.0% | |
| ! | TCATGGCCAAAGAGTGGTTT+TGG | - | chr1_1:48274876-48274895 | Msa0025270:CDS | 45.0% |
| AGATGGTGTGGCTGTAAAAG+AGG | - | chr1_1:48274918-48274937 | Msa0025270:CDS | 45.0% | |
| !! | TTGTGCAAGGAGTTGGTAGA+TGG | - | chr1_1:48274961-48274980 | Msa0025270:CDS | 45.0% |
| CTAGATTTAGTGAAGCGGGT+TGG | - | chr1_1:48275506-48275525 | Msa0025270:intron | 45.0% | |
| TAAGCTGTCATTCGTCCGAA+TGG | - | chr1_1:48275903-48275922 | Msa0025270:CDS | 45.0% | |
| CTCAAACATGTCCTGCAACA+AGG | + | chr1_1:48276050-48276069 | None:intergenic | 45.0% | |
| CTTGTTGCAGGACATGTTTG+AGG | - | chr1_1:48276048-48276067 | Msa0025270:CDS | 45.0% | |
| GAAATTCATGTTTGCTCCGG+AGG | + | chr1_1:48276176-48276195 | None:intergenic | 45.0% | |
| TCTGCTGTTAACTGTCATGC+CGG | - | chr1_1:48276249-48276268 | Msa0025270:intron | 45.0% | |
| TGAATTTCTTCTGACCTGGC+AGG | - | chr1_1:48276367-48276386 | Msa0025270:intron | 45.0% | |
| ! | ATTGTGTTGGTGTGCAGTGT+TGG | - | chr1_1:48276656-48276675 | Msa0025270:intron | 45.0% |
| ! | CAATCTCTCAGACGTTGACT+TGG | - | chr1_1:48276745-48276764 | Msa0025270:intron | 45.0% |
| CCGACCTGATATTCAGAATG+AGG | - | chr1_1:48277089-48277108 | Msa0025270:intron | 45.0% | |
| ! | ATCAAAGCACCAGGTCTTTC+TGG | + | chr1_1:48277135-48277154 | None:intergenic | 45.0% |
| TAGACTCCTTTAGTCCACGA+TGG | - | chr1_1:48277163-48277182 | Msa0025270:intron | 45.0% | |
| TTCTAACCTGTGCACGGTAA+TGG | + | chr1_1:48277203-48277222 | None:intergenic | 45.0% | |
| ! | ATGGCTTGTACTTGCTGCTT+CGG | - | chr1_1:48277303-48277322 | Msa0025270:CDS | 45.0% |
| AGATTGGGAGGAAGAAATGG+TGG | - | chr1_1:48277856-48277875 | Msa0025270:intron | 45.0% | |
| ! | GGAGGAAGAAATGGTGGAAA+CGG | - | chr1_1:48277862-48277881 | Msa0025270:intron | 45.0% |
| ! | AAGAAATGGTGGAAACGGAG+TGG | - | chr1_1:48277867-48277886 | Msa0025270:intron | 45.0% |
| AAGTGAGGGACGGACAAATT+AGG | - | chr1_1:48278054-48278073 | Msa0025270:intron | 45.0% | |
| CCCGTGACACAATCAACATA+GGG | + | chr1_1:48278618-48278637 | None:intergenic | 45.0% | |
| ! | CCCTATGTTGATTGTGTCAC+GGG | - | chr1_1:48278615-48278634 | Msa0025270:intron | 45.0% |
| TCCCGTGACACAATCAACAT+AGG | + | chr1_1:48278619-48278638 | None:intergenic | 45.0% | |
| CGGTTTCTCTAGATGTCACT+TGG | - | chr1_1:48278684-48278703 | Msa0025270:intron | 45.0% | |
| !!! | TTATTAATTGATTTTTTTTT+TGG | - | chr1_1:48273914-48273933 | Msa0025270:intron | 5.0% |
| !!! | TATTAATTGATTTTTTTTTT+GGG | - | chr1_1:48273915-48273934 | Msa0025270:intron | 5.0% |
| !! | AATGAATAATAAAATATTAT+TGG | + | chr1_1:48276639-48276658 | None:intergenic | 5.0% |
| !! | AGATTAAAATAAAAATAATT+TGG | + | chr1_1:48278582-48278601 | None:intergenic | 5.0% |
| !! | TTAGTTATTAAATATTAATT+TGG | - | chr1_1:48278799-48278818 | Msa0025270:intron | 5.0% |
| !!! | ATATATATATTTTTTTTCAT+AGG | - | chr1_1:48279066-48279085 | Msa0025270:CDS | 5.0% |
| TGATAATCGTAGCGCCTCCA+TGG | + | chr1_1:48272991-48273010 | None:intergenic | 50.0% | |
| GCATTCTGTGACGGTGGTTA+CGG | + | chr1_1:48273037-48273056 | None:intergenic | 50.0% | |
| GGTTAGGGTGAAGAGTAGTG+TGG | + | chr1_1:48273061-48273080 | None:intergenic | 50.0% | |
| AATTATTGAGTCTCCGGCGG+CGG | - | chr1_1:48273151-48273170 | Msa0025270:three_prime_UTR | 50.0% | |
| CAGTATCCACCTGGTTACGT+TGG | - | chr1_1:48273209-48273228 | Msa0025270:intron | 50.0% | |
| ! | GGTGGTGATGAAGGTGATTG+TGG | - | chr1_1:48273254-48273273 | Msa0025270:intron | 50.0% |
| ! | AGCTTTGGCGCCAATTCAAG+AGG | + | chr1_1:48273347-48273366 | None:intergenic | 50.0% |
| GACGTCAGAGACTAAGGGTA+AGG | - | chr1_1:48273571-48273590 | Msa0025270:intron | 50.0% | |
| ACTAAGGGTAAGGGTCCGTT+TGG | - | chr1_1:48273581-48273600 | Msa0025270:intron | 50.0% | |
| GGGGTTATATGCTCTTCAGC+TGG | - | chr1_1:48274106-48274125 | Msa0025270:intron | 50.0% | |
| GCTAATGTTTGTCTCAGCCG+GGG | + | chr1_1:48274317-48274336 | None:intergenic | 50.0% | |
| TGCAGTGGAAATCTGTGGAG+AGG | - | chr1_1:48274438-48274457 | Msa0025270:intron | 50.0% | |
| AGTGGAAATCTGTGGAGAGG+TGG | - | chr1_1:48274441-48274460 | Msa0025270:intron | 50.0% | |
| GTGGAAATCTGTGGAGAGGT+GGG | - | chr1_1:48274442-48274461 | Msa0025270:intron | 50.0% | |
| TGGAAATCTGTGGAGAGGTG+GGG | - | chr1_1:48274443-48274462 | Msa0025270:intron | 50.0% | |
| !! | GGTGCTACTGTGGTCCTTAT+TGG | - | chr1_1:48274464-48274483 | Msa0025270:intron | 50.0% |
| TCCCGATGTCATTATGGGTC+AGG | - | chr1_1:48274568-48274587 | Msa0025270:intron | 50.0% | |
| CCCTGACCCATAATGACATC+GGG | + | chr1_1:48274572-48274591 | None:intergenic | 50.0% | |
| CCCGATGTCATTATGGGTCA+GGG | - | chr1_1:48274569-48274588 | Msa0025270:intron | 50.0% | |
| TTATGGGTCAGGGAACTGTC+GGG | - | chr1_1:48274579-48274598 | Msa0025270:intron | 50.0% | |
| CATGAACTGGACGCTTCATC+TGG | + | chr1_1:48274619-48274638 | None:intergenic | 50.0% | |
| ! | GTATTGCCGCTTACGTGAAG+AGG | - | chr1_1:48274678-48274697 | Msa0025270:intron | 50.0% |
| ! | GTGAACAAAGGCACGTGCAA+TGG | + | chr1_1:48274750-48274769 | None:intergenic | 50.0% |
| TGCACGTGCCTTTGTTCACT+TGG | - | chr1_1:48274751-48274770 | Msa0025270:intron | 50.0% | |
| CCTGGTCCAAAACCACTCTT+TGG | + | chr1_1:48274885-48274904 | None:intergenic | 50.0% | |
| !!! | CCAAAGAGTGGTTTTGGACC+AGG | - | chr1_1:48274882-48274901 | Msa0025270:CDS | 50.0% |
| !!! | AGAGTGGTTTTGGACCAGGT+TGG | - | chr1_1:48274886-48274905 | Msa0025270:CDS | 50.0% |
| CATCTGCAAATCCTCCAACC+TGG | + | chr1_1:48274903-48274922 | None:intergenic | 50.0% | |
| ! | CAGGTTGGAGGATTTGCAGA+TGG | - | chr1_1:48274901-48274920 | Msa0025270:CDS | 50.0% |
| TGGAGGATTTGCAGATGGTG+TGG | - | chr1_1:48274906-48274925 | Msa0025270:CDS | 50.0% | |
| GGTGTGGCTGTAAAAGAGGT+TGG | - | chr1_1:48274922-48274941 | Msa0025270:CDS | 50.0% | |
| GGAAACTTTCCGCTTGTGCA+AGG | - | chr1_1:48274948-48274967 | Msa0025270:CDS | 50.0% | |
| TTTCCGCTTGTGCAAGGAGT+TGG | - | chr1_1:48274954-48274973 | Msa0025270:CDS | 50.0% | |
| CTACCAACTCCTTGCACAAG+CGG | + | chr1_1:48274960-48274979 | None:intergenic | 50.0% | |
| !! | ATTCCCCACGGTGCTGATTT+CGG | - | chr1_1:48275644-48275663 | Msa0025270:intron | 50.0% |
| ! | GCTTTTAACCAACCCTCGCA+AGG | - | chr1_1:48275695-48275714 | Msa0025270:intron | 50.0% |
| TTTAACCAACCCTCGCAAGG+TGG | - | chr1_1:48275698-48275717 | Msa0025270:intron | 50.0% | |
| !! | ATTGGACCCCTCGGATTAGT+CGG | - | chr1_1:48275729-48275748 | Msa0025270:intron | 50.0% |
| CAAGAACCGACTAATCCGAG+GGG | + | chr1_1:48275738-48275757 | None:intergenic | 50.0% | |
| GCAAGAACCGACTAATCCGA+GGG | + | chr1_1:48275739-48275758 | None:intergenic | 50.0% | |
| ! | AGGAGCATATTGGAACCAGC+AGG | - | chr1_1:48276076-48276095 | Msa0025270:CDS | 50.0% |
| ATTTCTTCTGACCTGGCAGG+TGG | - | chr1_1:48276370-48276389 | Msa0025270:intron | 50.0% | |
| TTTCTTCTGACCTGGCAGGT+GGG | - | chr1_1:48276371-48276390 | Msa0025270:intron | 50.0% | |
| TGGCGGTTGGGAATAGTGAA+GGG | + | chr1_1:48276847-48276866 | None:intergenic | 50.0% | |
| TTGGCGGTTGGGAATAGTGA+AGG | + | chr1_1:48276848-48276867 | None:intergenic | 50.0% | |
| ! | AGCACCAGGTCTTTCTGGAA+AGG | + | chr1_1:48277130-48277149 | None:intergenic | 50.0% |
| ! | TTGTACTTGCTGCTTCGGAC+AGG | - | chr1_1:48277308-48277327 | Msa0025270:CDS | 50.0% |
| ! | TGTACTTGCTGCTTCGGACA+GGG | - | chr1_1:48277309-48277328 | Msa0025270:CDS | 50.0% |
| AATTCCTCCATCTCGCTGCT+TGG | + | chr1_1:48277372-48277391 | None:intergenic | 50.0% | |
| GAATTCAACGATCGTGCCAC+CGG | - | chr1_1:48277387-48277406 | Msa0025270:CDS | 50.0% | |
| ATAGTCATACCCAAGTCCGG+TGG | + | chr1_1:48277406-48277425 | None:intergenic | 50.0% | |
| TCGTAGCGCCTCCATGGTTT+GGG | + | chr1_1:48272985-48273004 | None:intergenic | 55.0% | |
| ATCGTAGCGCCTCCATGGTT+TGG | + | chr1_1:48272986-48273005 | None:intergenic | 55.0% | |
| TTCTGTGACGGTGGTTACGG+AGG | + | chr1_1:48273034-48273053 | None:intergenic | 55.0% | |
| TGTGGTGCATTCTGTGACGG+TGG | + | chr1_1:48273043-48273062 | None:intergenic | 55.0% | |
| GCGGCGGTGGTTGTTATGAA+TGG | + | chr1_1:48273095-48273114 | None:intergenic | 55.0% | |
| AGACTTTGATACTGCGGCGG+CGG | + | chr1_1:48273111-48273130 | None:intergenic | 55.0% | |
| GCCGCCGGAGACTCAATAAT+TGG | + | chr1_1:48273152-48273171 | None:intergenic | 55.0% | |
| TCCGAGGTTGAAGGTTTCGC+CGG | - | chr1_1:48273178-48273197 | Msa0025270:three_prime_UTR | 55.0% | |
| TCCGGCGAAACCTTCAACCT+CGG | + | chr1_1:48273182-48273201 | None:intergenic | 55.0% | |
| TCCACCTGGTTACGTTGGAG+CGG | - | chr1_1:48273214-48273233 | Msa0025270:intron | 55.0% | |
| ! | AGGACACGTGGTGGTGATGA+AGG | - | chr1_1:48273245-48273264 | Msa0025270:intron | 55.0% |
| GCAATCTTTGTGCCTGTGGG+AGG | - | chr1_1:48274638-48274657 | Msa0025270:intron | 55.0% | |
| ATCTTTGTGCCTGTGGGAGG+TGG | - | chr1_1:48274641-48274660 | Msa0025270:intron | 55.0% | |
| !!! | GTGGTTTTGGACCAGGTTGG+AGG | - | chr1_1:48274889-48274908 | Msa0025270:CDS | 55.0% |
| GGCTGTAAAAGAGGTTGGCG+AGG | - | chr1_1:48274927-48274946 | Msa0025270:CDS | 55.0% | |
| ! | AATGGTGGTGTGTGTGCGTG+TGG | + | chr1_1:48275091-48275110 | None:intergenic | 55.0% |
| CGCAAGAACCGACTAATCCG+AGG | + | chr1_1:48275740-48275759 | None:intergenic | 55.0% | |
| GCTGTTAACTGTCATGCCGG+AGG | - | chr1_1:48276252-48276271 | Msa0025270:intron | 55.0% | |
| TTGAAACTGCCAGGCTCCTC+CGG | + | chr1_1:48276271-48276290 | None:intergenic | 55.0% | |
| TTCTTCTGACCTGGCAGGTG+GGG | - | chr1_1:48276372-48276391 | Msa0025270:intron | 55.0% | |
| TCAGGTTCCAAGCAGCGAGA+TGG | - | chr1_1:48277362-48277381 | Msa0025270:CDS | 55.0% | |
| TGGTTACGGAGGAGGAGGTG+AGG | + | chr1_1:48273023-48273042 | None:intergenic | 60.0% | |
| TGTGACGGTGGTTACGGAGG+AGG | + | chr1_1:48273031-48273050 | None:intergenic | 60.0% | |
| GGCGAAACCTTCAACCTCGG+AGG | + | chr1_1:48273179-48273198 | None:intergenic | 60.0% | |
| ACCGCTCCAACGTAACCAGG+TGG | + | chr1_1:48273218-48273237 | None:intergenic | 60.0% | |
| GGAACCGCTCCAACGTAACC+AGG | + | chr1_1:48273221-48273240 | None:intergenic | 60.0% | |
| ACGTTGGAGCGGTTCCTGAC+AGG | - | chr1_1:48273225-48273244 | Msa0025270:intron | 60.0% | |
| GTTCCTGACAGGACACGTGG+TGG | - | chr1_1:48273236-48273255 | Msa0025270:intron | 60.0% | |
| TCACCACCACGTGTCCTGTC+AGG | + | chr1_1:48273242-48273261 | None:intergenic | 60.0% | |
| TTTGTGCCTGTGGGAGGTGG+TGG | - | chr1_1:48274644-48274663 | Msa0025270:intron | 60.0% | |
| ATGAGACCACCACCTCCCAC+AGG | + | chr1_1:48274653-48274672 | None:intergenic | 60.0% | |
| ! | GGAGGTGGTGGTCTCATTGC+TGG | - | chr1_1:48274656-48274675 | Msa0025270:intron | 60.0% |
| !! | AAGCGGGTTGGAGAGAGAGC+TGG | - | chr1_1:48275518-48275537 | Msa0025270:intron | 60.0% |
| !! | AGCGGGTTGGAGAGAGAGCT+GGG | - | chr1_1:48275519-48275538 | Msa0025270:intron | 60.0% |
| GTTGGAGAGAGAGCTGGGAG+TGG | - | chr1_1:48275524-48275543 | Msa0025270:CDS | 60.0% | |
| GAGAGAGAGCTGGGAGTGGT+AGG | - | chr1_1:48275528-48275547 | Msa0025270:CDS | 60.0% | |
| CCACCGAAATCAGCACCGTG+GGG | + | chr1_1:48275650-48275669 | None:intergenic | 60.0% | |
| CCCACCGAAATCAGCACCGT+GGG | + | chr1_1:48275651-48275670 | None:intergenic | 60.0% | |
| !! | CCCACGGTGCTGATTTCGGT+GGG | - | chr1_1:48275648-48275667 | Msa0025270:intron | 60.0% |
| ACCCACCGAAATCAGCACCG+TGG | + | chr1_1:48275652-48275671 | None:intergenic | 60.0% | |
| ATTCATCTGCCCCACCTGCC+AGG | + | chr1_1:48276384-48276403 | None:intergenic | 60.0% | |
| TGCTTCGGACAGGGTGAAGC+TGG | - | chr1_1:48277318-48277337 | Msa0025270:CDS | 60.0% | |
| GGTTCCAAGCAGCGAGATGG+AGG | - | chr1_1:48277365-48277384 | Msa0025270:CDS | 60.0% | |
| AACGATCGTGCCACCGGACT+TGG | - | chr1_1:48277393-48277412 | Msa0025270:CDS | 60.0% | |
| ACGATCGTGCCACCGGACTT+GGG | - | chr1_1:48277394-48277413 | Msa0025270:CDS | 60.0% | |
| CGGAGGAGGAGGTGAGGTTG+TGG | + | chr1_1:48273017-48273036 | None:intergenic | 65.0% | |
| GACGGTGGTTACGGAGGAGG+AGG | + | chr1_1:48273028-48273047 | None:intergenic | 65.0% | |
| CTTTGATACTGCGGCGGCGG+TGG | + | chr1_1:48273108-48273127 | None:intergenic | 65.0% | |
| GCGGTTCCTGACAGGACACG+TGG | - | chr1_1:48273233-48273252 | Msa0025270:intron | 65.0% | |
| !! | GGAGAGGTGGGGTGCTACTG+TGG | - | chr1_1:48274454-48274473 | Msa0025270:intron | 65.0% |
| GGGTCAGGGAACTGTCGGGA+TGG | - | chr1_1:48274583-48274602 | Msa0025270:intron | 65.0% | |
| !! | CCCCACGGTGCTGATTTCGG+TGG | - | chr1_1:48275647-48275666 | Msa0025270:intron | 65.0% |
| ACCAACCCTCGCAAGGTGGC+CGG | - | chr1_1:48275702-48275721 | Msa0025270:intron | 65.0% | |
| TCCGAGGGGTCCAATCCCAC+CGG | + | chr1_1:48275724-48275743 | None:intergenic | 65.0% | |
| !! | GCAAGAGCAAGAGCGCCTGC+TGG | + | chr1_1:48276094-48276113 | None:intergenic | 65.0% |
| GCAGGCGCTCTTGCTCTTGC+TGG | - | chr1_1:48276094-48276113 | Msa0025270:CDS | 65.0% | |
| ACTGTCATGCCGGAGGAGCC+TGG | - | chr1_1:48276259-48276278 | Msa0025270:intron | 65.0% | |
| GGCGGCTCCTCCGAGGTTGA+AGG | - | chr1_1:48273169-48273188 | Msa0025270:three_prime_UTR | 70.0% | |
| ACCGGCCACCTTGCGAGGGT+TGG | + | chr1_1:48275706-48275725 | None:intergenic | 70.0% | |
| AACCCTCGCAAGGTGGCCGG+TGG | - | chr1_1:48275705-48275724 | Msa0025270:intron | 70.0% | |
| ACCCTCGCAAGGTGGCCGGT+GGG | - | chr1_1:48275706-48275725 | Msa0025270:intron | 70.0% | |
| TCCCACCGGCCACCTTGCGA+GGG | + | chr1_1:48275710-48275729 | None:intergenic | 70.0% | |
| ATCCCACCGGCCACCTTGCG+AGG | + | chr1_1:48275711-48275730 | None:intergenic | 70.0% | |
| CGCAAGGTGGCCGGTGGGAT+TGG | - | chr1_1:48275711-48275730 | Msa0025270:intron | 70.0% | |
| GCCGGTGGGATTGGACCCCT+CGG | - | chr1_1:48275720-48275739 | Msa0025270:intron | 70.0% | |
| AACCTCGGAGGAGCCGCCGC+CGG | + | chr1_1:48273167-48273186 | None:intergenic | 75.0% | |
| ! | CTCCGGCGGCGGCTCCTCCG+AGG | - | chr1_1:48273162-48273181 | Msa0025270:three_prime_UTR | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 48272903 | 48279408 | 48272903 | ID=Msa0025270;Name=Msa0025270 |
| chr1_1 | mRNA | 48272903 | 48279408 | 48272903 | ID=Msa0025270-mRNA-1;Parent=Msa0025270;Name=Msa0025270-mRNA-1;_AED=0.13;_eAED=0.13;_QI=75|1|1|1|0.88|0.8|10|360|603 |
| chr1_1 | exon | 48272903 | 48273223 | 48272903 | ID=Msa0025270-mRNA-1:exon:13856;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48274802 | 48274981 | 48274802 | ID=Msa0025270-mRNA-1:exon:13855;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48275096 | 48275230 | 48275096 | ID=Msa0025270-mRNA-1:exon:13854;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48275521 | 48275638 | 48275521 | ID=Msa0025270-mRNA-1:exon:13853;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48275852 | 48275922 | 48275852 | ID=Msa0025270-mRNA-1:exon:13852;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48276005 | 48276253 | 48276005 | ID=Msa0025270-mRNA-1:exon:13851;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48277285 | 48277491 | 48277285 | ID=Msa0025270-mRNA-1:exon:13850;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48277599 | 48277868 | 48277599 | ID=Msa0025270-mRNA-1:exon:13849;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48278095 | 48278274 | 48278095 | ID=Msa0025270-mRNA-1:exon:13848;Parent=Msa0025270-mRNA-1 |
| chr1_1 | exon | 48278893 | 48279408 | 48278893 | ID=Msa0025270-mRNA-1:exon:13847;Parent=Msa0025270-mRNA-1 |
| chr1_1 | five_prime_UTR | 48279334 | 48279408 | 48279334 | ID=Msa0025270-mRNA-1:five_prime_utr;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48278893 | 48279333 | 48278893 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48278095 | 48278274 | 48278095 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48277599 | 48277868 | 48277599 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48277285 | 48277491 | 48277285 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48276005 | 48276253 | 48276005 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48275852 | 48275922 | 48275852 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48275521 | 48275638 | 48275521 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48275096 | 48275230 | 48275096 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | CDS | 48274841 | 48274981 | 48274841 | ID=Msa0025270-mRNA-1:cds;Parent=Msa0025270-mRNA-1 |
| chr1_1 | three_prime_UTR | 48274802 | 48274840 | 48274802 | ID=Msa0025270-mRNA-1:three_prime_utr;Parent=Msa0025270-mRNA-1 |
| chr1_1 | three_prime_UTR | 48272903 | 48273223 | 48272903 | ID=Msa0025270-mRNA-1:three_prime_utr;Parent=Msa0025270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
