Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072700 | XP_003590411.2 | 97.414 | 580 | 13 | 1 | 1 | 578 | 26 | 605 | 0.0 | 1167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072700 | sp|Q9ZSS6|THD1_ARATH | 78.383 | 532 | 114 | 1 | 47 | 578 | 62 | 592 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072700 | G7I9D6 | 97.414 | 580 | 13 | 1 | 1 | 578 | 26 | 605 | 0.0 | 1167 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025270 | Msa0072700 | 0.924889 | 3.851554e-90 | -8.615850e-47 |
| Msa0072700 | Msa1416530 | 0.951626 | 1.373977e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072700 | MtrunA17_Chr1g0179661 | 94.521 | 584 | 24 | 2 | 1 | 576 | 26 | 609 | 0.0 | 1086 |
| Msa0072700 | MtrunA17_Chr8g0386671 | 29.677 | 310 | 199 | 5 | 88 | 387 | 24 | 324 | 3.05e-36 | 138 |
| Msa0072700 | MtrunA17_Chr7g0265651 | 29.221 | 308 | 203 | 6 | 88 | 387 | 18 | 318 | 1.35e-31 | 125 |
| Msa0072700 | MtrunA17_Chr1g0177211 | 29.139 | 302 | 189 | 6 | 97 | 388 | 29 | 315 | 4.83e-24 | 103 |
| Msa0072700 | MtrunA17_Chr7g0265841 | 32.022 | 178 | 116 | 4 | 213 | 387 | 45 | 220 | 3.05e-21 | 92.8 |
| Msa0072700 | MtrunA17_Chr4g0045771 | 29.319 | 191 | 113 | 6 | 112 | 287 | 72 | 255 | 4.77e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072700 | AT3G10050.1 | 78.383 | 532 | 114 | 1 | 47 | 578 | 62 | 592 | 0.0 | 827 |
| Msa0072700 | AT4G11640.1 | 31.250 | 304 | 190 | 4 | 97 | 390 | 29 | 323 | 5.62e-32 | 126 |
Find 185 sgRNAs with CRISPR-Local
Find 448 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAAGCACCAGGTCTTTC+TGG | 0.204169 | 1_2:+45727952 | None:intergenic |
| AGAAAGCTGTTGTTCTTTAC+AGG | 0.220056 | 1_2:-45728646 | Msa0072700:intron |
| TGTTCACAGGTGAAGATAAT+TGG | 0.222912 | 1_2:-45730273 | Msa0072700:intron |
| CATTACGACCATCAGAAATT+TGG | 0.259275 | 1_2:+45725885 | None:intergenic |
| TCATGGCCAAAGAGTGGTTT+TGG | 0.273388 | 1_2:-45730208 | Msa0072700:CDS |
| ATCGTAGCGCCTCCATTGTT+TGG | 0.282208 | 1_2:+45732153 | None:intergenic |
| GCAGGCGCTCTTGCTCTTGC+TGG | 0.290001 | 1_2:-45728990 | Msa0072700:CDS |
| TGATCATCCCGATGTCATTA+TGG | 0.291301 | 1_2:-45730522 | Msa0072700:CDS |
| GAAGCATACTGCAAGTATTA+TGG | 0.291652 | 1_2:-45728963 | Msa0072700:CDS |
| GGTGCTACTGTGGTCCTTAT+TGG | 0.302177 | 1_2:-45730620 | Msa0072700:CDS |
| TAAACTTCCAAAGGATGTTT+TGG | 0.314115 | 1_2:-45731060 | Msa0072700:CDS |
| GACTAGTATACTTACTTCTA+AGG | 0.323743 | 1_2:-45731830 | Msa0072700:CDS |
| CCTTTCTCCAAAACATCCTT+TGG | 0.326655 | 1_2:+45731053 | None:intergenic |
| GGAGGTGGTGGTCTCATTGC+TGG | 0.328700 | 1_2:-45730428 | Msa0072700:CDS |
| ACATTGTTGGACAATAAATA+TGG | 0.331590 | 1_2:-45725969 | Msa0072700:three_prime_UTR |
| CAGAAATTTGGTCAAGTAGA+AGG | 0.336101 | 1_2:+45725897 | None:intergenic |
| AAATGTATTAGTTGGAATTC+AGG | 0.343393 | 1_2:-45727740 | Msa0072700:CDS |
| AATGGTTTGAAACGAGGGTT+AGG | 0.357051 | 1_2:+45732054 | None:intergenic |
| GATCATCCCGATGTCATTAT+GGG | 0.362274 | 1_2:-45730521 | Msa0072700:CDS |
| GCCGCCGGAGACTCAATAAA+AGG | 0.363499 | 1_2:+45731979 | None:intergenic |
| GTTCACAGGTGAAGATAATT+GGG | 0.369464 | 1_2:-45730272 | Msa0072700:intron |
| CGTAATGGAAATCGAATATC+AGG | 0.370920 | 1_2:-45725869 | Msa0072700:three_prime_UTR |
| TGTTGAATCTCCTCTTGAAT+TGG | 0.375609 | 1_2:-45731794 | Msa0072700:CDS |
| TTCTAACCTGTGCACGGTAA+TGG | 0.384917 | 1_2:+45727884 | None:intergenic |
| CATGAACGGGACGCTTCATC+TGG | 0.385719 | 1_2:+45730468 | None:intergenic |
| AAAGACTTGGTGTTAATGTT+TGG | 0.390736 | 1_2:-45731756 | Msa0072700:CDS |
| AGTATCAAAGTCTGTTGAAA+TGG | 0.394374 | 1_2:-45732010 | Msa0072700:CDS |
| AACGATCGTGCCACCGGACT+TGG | 0.396780 | 1_2:-45727691 | Msa0072700:CDS |
| CCAAGTCTTTCAGAAAGCTT+TGG | 0.402419 | 1_2:+45731769 | None:intergenic |
| TGCAATTTGTGCATCGATAA+AGG | 0.407203 | 1_2:-45730079 | Msa0072700:intron |
| CGCGTTGCAATTCAATCTCT+TGG | 0.408559 | 1_2:+45730980 | None:intergenic |
| TCGTAGCGCCTCCATTGTTT+GGG | 0.409785 | 1_2:+45732154 | None:intergenic |
| TCCCGATGTCATTATGGGTC+AGG | 0.412631 | 1_2:-45730516 | Msa0072700:CDS |
| CATCGTAGGAATCTCCAATA+AGG | 0.416381 | 1_2:+45730606 | None:intergenic |
| AGAACCTCATTCTGAATATC+AGG | 0.417812 | 1_2:+45727991 | None:intergenic |
| TTGATGTCAGGAGTGGTAAC+TGG | 0.423089 | 1_2:+45730945 | None:intergenic |
| GCGGCGGTGGTTGTTATGAA+TGG | 0.423932 | 1_2:+45732036 | None:intergenic |
| CCTGGTCCAAAACCACTCTT+TGG | 0.424183 | 1_2:+45730202 | None:intergenic |
| CAAATTTCTGATGGTCGTAA+TGG | 0.424706 | 1_2:-45725884 | Msa0072700:three_prime_UTR |
| GGCGGCTCCTCCGAGGTTGA+AGG | 0.426236 | 1_2:-45731959 | Msa0072700:CDS |
| ACATGAATTTCGATAAACTT+AGG | 0.431536 | 1_2:-45728899 | Msa0072700:CDS |
| GGCACAAAGATTGCATGAAC+GGG | 0.443581 | 1_2:+45730455 | None:intergenic |
| GCATTAAAAGCTTGAAGAAA+AGG | 0.446362 | 1_2:+45727641 | None:intergenic |
| AATTCCTCCATCTCGCTGCT+TGG | 0.448041 | 1_2:+45727715 | None:intergenic |
| TGCTTCGGACAGGGTGAAGC+TGG | 0.448565 | 1_2:-45727766 | Msa0072700:intron |
| CTTTGATACTGCGGCGGCGG+TGG | 0.450776 | 1_2:+45732023 | None:intergenic |
| TTTGTGCCTGTGGGAGGTGG+TGG | 0.459179 | 1_2:-45730440 | Msa0072700:CDS |
| GCTGGAGCAAATGTATTAGT+TGG | 0.462032 | 1_2:-45727748 | Msa0072700:CDS |
| TGCTAAGAAGCGTGCTATAG+AGG | 0.465358 | 1_2:-45730570 | Msa0072700:CDS |
| CTTGTTAATATTCATAATTG+AGG | 0.465771 | 1_2:-45725753 | Msa0072700:three_prime_UTR |
| GCATTCTGTGACGGTGGTTA+CGG | 0.467805 | 1_2:+45732094 | None:intergenic |
| AAAAGAAATGCAGGAGAGAA+TGG | 0.468861 | 1_2:-45728384 | Msa0072700:CDS |
| ATCTTTGTGCCTGTGGGAGG+TGG | 0.470012 | 1_2:-45730443 | Msa0072700:CDS |
| TTGTTAATATTCATAATTGA+GGG | 0.471035 | 1_2:-45725752 | Msa0072700:three_prime_UTR |
| TAAATGAATACCTTGATGTC+AGG | 0.478406 | 1_2:+45730933 | None:intergenic |
| TCATAGGTTCTCTCAATTGG+AGG | 0.482490 | 1_2:-45726006 | Msa0072700:intron |
| CTCATTCTGAATATCAGGTC+GGG | 0.484844 | 1_2:+45727996 | None:intergenic |
| AAGAACAACAGCTTTCTCCT+TGG | 0.486008 | 1_2:+45728652 | None:intergenic |
| ATCGAAATTCATGTTTGCTC+CGG | 0.486984 | 1_2:+45728908 | None:intergenic |
| ACTGTCATGCCGGAGGAGCC+TGG | 0.487185 | 1_2:-45728825 | Msa0072700:CDS |
| CCCTGACCCATAATGACATC+GGG | 0.487914 | 1_2:+45730515 | None:intergenic |
| CGGAGGAGGAGGTGAGGTTG+TGG | 0.491684 | 1_2:+45732114 | None:intergenic |
| CAATCTCTCAGACGTTGACT+TGG | 0.492337 | 1_2:-45728339 | Msa0072700:CDS |
| CCAAAGCTTTCTGAAAGACT+TGG | 0.492496 | 1_2:-45731769 | Msa0072700:CDS |
| ATGACATCGGGATGATCAAA+AGG | 0.497200 | 1_2:+45730527 | None:intergenic |
| GGTGGATACTGAAGTGAATC+CGG | 0.500821 | 1_2:+45731931 | None:intergenic |
| AGCCAATGCATTTGCATCAG+TGG | 0.500969 | 1_2:+45730242 | None:intergenic |
| TTGAAACTGCCAGGCTCCTC+CGG | 0.501285 | 1_2:+45728816 | None:intergenic |
| CTACTTGACCAAATTTCTGA+TGG | 0.503098 | 1_2:-45725893 | Msa0072700:three_prime_UTR |
| TTTATTCCATTACCGTGCAC+AGG | 0.503763 | 1_2:-45727890 | Msa0072700:intron |
| CTTGTTGCAGGACATGTTTG+AGG | 0.504713 | 1_2:-45729036 | Msa0072700:intron |
| GCAAGAGCAAGAGCGCCTGC+TGG | 0.505562 | 1_2:+45728993 | None:intergenic |
| GCCAATGCATTTGCATCAGT+GGG | 0.508903 | 1_2:+45730243 | None:intergenic |
| TCACCACCACGTGTCCTGTC+AGG | 0.510048 | 1_2:+45731889 | None:intergenic |
| GATATTCCATCGTGGACTAA+AGG | 0.510605 | 1_2:+45727915 | None:intergenic |
| GTGAGGTTGTGGCTGTGTGG+TGG | 0.514283 | 1_2:+45732125 | None:intergenic |
| AACCTCGGAGGAGCCGCCGC+CGG | 0.515606 | 1_2:+45731964 | None:intergenic |
| TCCGGCGAAACCTTCAACCT+CGG | 0.516696 | 1_2:+45731949 | None:intergenic |
| TTTCCGCTTGTGCAAGGAGT+TGG | 0.517649 | 1_2:-45730130 | Msa0072700:CDS |
| CAAAACTGTTTGAAACTGCC+AGG | 0.518258 | 1_2:+45728807 | None:intergenic |
| ATGGTTTGAAACGAGGGTTA+GGG | 0.519460 | 1_2:+45732055 | None:intergenic |
| TTGGCTTTGTCACTTCATCA+TGG | 0.519786 | 1_2:-45730225 | Msa0072700:CDS |
| CTGCAAGTATTATGGACTCA+AGG | 0.522899 | 1_2:-45728955 | Msa0072700:CDS |
| GGTGGTGATGAAGGTGATTG+TGG | 0.525787 | 1_2:-45731874 | Msa0072700:CDS |
| CCGTGGAGCTTATAATATGA+TGG | 0.527606 | 1_2:-45731084 | Msa0072700:CDS |
| ACGTTGGAGCGGTTCCTGAC+AGG | 0.531537 | 1_2:-45731903 | Msa0072700:CDS |
| GTGGAAATCTGTGGAGAGGT+GGG | 0.532704 | 1_2:-45730642 | Msa0072700:CDS |
| GAGGTGAGGTTGTGGCTGTG+TGG | 0.533066 | 1_2:+45732122 | None:intergenic |
| GAAATTCATGTTTGCTCCGG+AGG | 0.534000 | 1_2:+45728911 | None:intergenic |
| ATTATGGGTCAGGGAACTGT+CGG | 0.534240 | 1_2:-45730506 | Msa0072700:CDS |
| GGGGTTATATGCTCTTCAGC+TGG | 0.534738 | 1_2:-45731032 | Msa0072700:CDS |
| TGTGACGGTGGTTACGGAGG+AGG | 0.536430 | 1_2:+45732100 | None:intergenic |
| CTTAGAACTAAAAGAAATGC+AGG | 0.539142 | 1_2:-45728393 | Msa0072700:CDS |
| TTATGAATGGTTTGAAACGA+GGG | 0.543995 | 1_2:+45732049 | None:intergenic |
| TCATGCAATCTTTGTGCCTG+TGG | 0.545885 | 1_2:-45730450 | Msa0072700:CDS |
| TCCGAGGTTGAAGGTTTCGC+CGG | 0.547453 | 1_2:-45731950 | Msa0072700:CDS |
| CCCGATGTCATTATGGGTCA+GGG | 0.549015 | 1_2:-45730515 | Msa0072700:CDS |
| CTACCAACTCCTTGCACAAG+CGG | 0.552453 | 1_2:+45730127 | None:intergenic |
| TTGTGCAAGGAGTTGGTAGA+TGG | 0.553314 | 1_2:-45730123 | Msa0072700:CDS |
| TTATGGGTCAGGGAACTGTC+GGG | 0.553513 | 1_2:-45730505 | Msa0072700:CDS |
| AGTTACCACTCCTGACATCA+AGG | 0.554442 | 1_2:-45730943 | Msa0072700:intron |
| TGCAAGTATTATGGACTCAA+GGG | 0.554844 | 1_2:-45728954 | Msa0072700:CDS |
| TCAGGTTCCAAGCAGCGAGA+TGG | 0.557536 | 1_2:-45727722 | Msa0072700:CDS |
| ATTCAATCTCTTGGCAGACA+TGG | 0.558202 | 1_2:+45730989 | None:intergenic |
| GACGGTGGTTACGGAGGAGG+AGG | 0.559083 | 1_2:+45732103 | None:intergenic |
| ATTATAGTCATACCCAAGTC+CGG | 0.560339 | 1_2:+45727678 | None:intergenic |
| ACGATCGTGCCACCGGACTT+GGG | 0.560800 | 1_2:-45727690 | Msa0072700:CDS |
| GGAAACTTTCCGCTTGTGCA+AGG | 0.561388 | 1_2:-45730136 | Msa0072700:CDS |
| AGGCACAAAGATTGCATGAA+CGG | 0.561561 | 1_2:+45730454 | None:intergenic |
| CTGGAAGAAGATTGTTCAAG+TGG | 0.562340 | 1_2:+45725728 | None:intergenic |
| GAATTCAACGATCGTGCCAC+CGG | 0.562341 | 1_2:-45727697 | Msa0072700:CDS |
| AGTGGAAATCTGTGGAGAGG+TGG | 0.565711 | 1_2:-45730643 | Msa0072700:CDS |
| GGAGAGGTGGGGTGCTACTG+TGG | 0.565931 | 1_2:-45730630 | Msa0072700:CDS |
| AGACTTTGATACTGCGGCGG+CGG | 0.567795 | 1_2:+45732020 | None:intergenic |
| CAGGTTGGAGGATTTGCAGA+TGG | 0.569395 | 1_2:-45730183 | Msa0072700:CDS |
| TCTGCTGTTAACTGTCATGC+CGG | 0.572842 | 1_2:-45728835 | Msa0072700:CDS |
| CATGCAATCTTTGTGCCTGT+GGG | 0.573818 | 1_2:-45730449 | Msa0072700:CDS |
| CTCCGGCGGCGGCTCCTCCG+AGG | 0.577523 | 1_2:-45731966 | Msa0072700:CDS |
| CCGACCTGATATTCAGAATG+AGG | 0.577734 | 1_2:-45727995 | Msa0072700:CDS |
| AGCACCAGGTCTTTCTGGAA+AGG | 0.579418 | 1_2:+45727957 | None:intergenic |
| GGGTCAGGGAACTGTCGGGA+TGG | 0.580900 | 1_2:-45730501 | Msa0072700:CDS |
| AATCAAAATGACCCAAACAA+TGG | 0.581108 | 1_2:-45732165 | Msa0072700:five_prime_UTR |
| GGAACCGCTCCAACGTAACC+AGG | 0.581487 | 1_2:+45731910 | None:intergenic |
| AGGACACGTGGTGGTGATGA+AGG | 0.582103 | 1_2:-45731883 | Msa0072700:CDS |
| TCAGCTGGAAATCATGCTCA+AGG | 0.584823 | 1_2:-45731017 | Msa0072700:CDS |
| TGTGGTGCATTCTGTGACGG+TGG | 0.586258 | 1_2:+45732088 | None:intergenic |
| AGGAGCATATTGGAACCAGC+AGG | 0.586301 | 1_2:-45729008 | Msa0072700:CDS |
| AGCTTTGGCGCCAATTCAAG+AGG | 0.586347 | 1_2:+45731784 | None:intergenic |
| ACCTTTGCAGTGGAAATCTG+TGG | 0.590239 | 1_2:-45730651 | Msa0072700:intron |
| TATGATGGCTAAACTTCCAA+AGG | 0.590661 | 1_2:-45731069 | Msa0072700:CDS |
| GTTATGAATGGTTTGAAACG+AGG | 0.592217 | 1_2:+45732048 | None:intergenic |
| CAGTATCCACCTGGTTACGT+TGG | 0.593210 | 1_2:-45731919 | Msa0072700:CDS |
| TTCTGTGACGGTGGTTACGG+AGG | 0.596110 | 1_2:+45732097 | None:intergenic |
| GCAATCTTTGTGCCTGTGGG+AGG | 0.596806 | 1_2:-45730446 | Msa0072700:CDS |
| TTCAACAGACTTTGATACTG+CGG | 0.597441 | 1_2:+45732014 | None:intergenic |
| ACCCACTGATGCAAATGCAT+TGG | 0.597685 | 1_2:-45730244 | Msa0072700:CDS |
| AAGAAGCGTGCTATAGAGGA+TGG | 0.597872 | 1_2:-45730566 | Msa0072700:CDS |
| GGTTCCAAGCAGCGAGATGG+AGG | 0.598270 | 1_2:-45727719 | Msa0072700:CDS |
| AATGTTATAGCAATAACCTC+CGG | 0.600808 | 1_2:-45728927 | Msa0072700:CDS |
| TGGAGGATTTGCAGATGGTG+TGG | 0.601430 | 1_2:-45730178 | Msa0072700:CDS |
| ATTTATCCTCTTCACGTAAG+CGG | 0.602234 | 1_2:+45730400 | None:intergenic |
| ATATGCTTGTGCTTCATCGT+AGG | 0.606395 | 1_2:+45730592 | None:intergenic |
| GATTGTGGAGTAAGTGCTAT+GGG | 0.606504 | 1_2:-45731859 | Msa0072700:CDS |
| ACTTCATCATGGCCAAAGAG+TGG | 0.606993 | 1_2:-45730214 | Msa0072700:CDS |
| TCCCTGACCCATAATGACAT+CGG | 0.610285 | 1_2:+45730514 | None:intergenic |
| CCTCATTCTGAATATCAGGT+CGG | 0.611117 | 1_2:+45727995 | None:intergenic |
| TGATTGTGGAGTAAGTGCTA+TGG | 0.611156 | 1_2:-45731860 | Msa0072700:CDS |
| CAAATACAGATATAGTTCCA+AGG | 0.611281 | 1_2:-45728669 | Msa0072700:CDS |
| TCCACCTGGTTACGTTGGAG+CGG | 0.612380 | 1_2:-45731914 | Msa0072700:CDS |
| GTAACTGAACTTGCTAATGT+CGG | 0.613762 | 1_2:-45728873 | Msa0072700:CDS |
| GTATTGCCGCTTACGTGAAG+AGG | 0.614397 | 1_2:-45730406 | Msa0072700:CDS |
| CCATCATATTATAAGCTCCA+CGG | 0.615666 | 1_2:+45731084 | None:intergenic |
| CATCTGCAAATCCTCCAACC+TGG | 0.616040 | 1_2:+45730184 | None:intergenic |
| GAAAGATCATTTGCGTCACA+TGG | 0.617461 | 1_2:-45728315 | Msa0072700:intron |
| TGCAAATTCTAACCTGTGCA+CGG | 0.621586 | 1_2:+45727878 | None:intergenic |
| TCGATGCACAAATTGCATCA+CGG | 0.623238 | 1_2:+45730085 | None:intergenic |
| TTTACCTTTCCAGAAAGACC+TGG | 0.624311 | 1_2:-45727961 | Msa0072700:CDS |
| ATGAGACCACCACCTCCCAC+AGG | 0.625201 | 1_2:+45730434 | None:intergenic |
| TGGTTACGGAGGAGGAGGTG+AGG | 0.625554 | 1_2:+45732108 | None:intergenic |
| GATTCACTTCAGTATCCACC+TGG | 0.627666 | 1_2:-45731928 | Msa0072700:CDS |
| AGATGGTGTGGCTGTAAAAG+AGG | 0.629062 | 1_2:-45730166 | Msa0072700:CDS |
| CAAAATGACCCAAACAATGG+AGG | 0.629565 | 1_2:-45732162 | Msa0072700:five_prime_UTR |
| TAGACTCCTTTAGTCCACGA+TGG | 0.634604 | 1_2:-45727921 | Msa0072700:CDS |
| GGCTGTAAAAGAGGTTGGCG+AGG | 0.636934 | 1_2:-45730157 | Msa0072700:CDS |
| GGTGTGGCTGTAAAAGAGGT+TGG | 0.638381 | 1_2:-45730162 | Msa0072700:CDS |
| TGGAAATCTGTGGAGAGGTG+GGG | 0.641456 | 1_2:-45730641 | Msa0072700:CDS |
| GCAAGTATTATGGACTCAAG+GGG | 0.645018 | 1_2:-45728953 | Msa0072700:CDS |
| GAATACCTTGATGTCAGGAG+TGG | 0.645242 | 1_2:+45730938 | None:intergenic |
| GCGGTTCCTGACAGGACACG+TGG | 0.649476 | 1_2:-45731895 | Msa0072700:CDS |
| CGTGAAGAGGATAAATCCAG+AGG | 0.652583 | 1_2:-45730393 | Msa0072700:intron |
| GCTGTTAACTGTCATGCCGG+AGG | 0.655840 | 1_2:-45728832 | Msa0072700:CDS |
| ACAGGTGAAGATAATTGGGG+TGG | 0.664304 | 1_2:-45730268 | Msa0072700:intron |
| TAGTGTGGTGCATTCTGTGA+CGG | 0.664443 | 1_2:+45732085 | None:intergenic |
| AACAGACTTTGATACTGCGG+CGG | 0.668352 | 1_2:+45732017 | None:intergenic |
| TGCAGTGGAAATCTGTGGAG+AGG | 0.669367 | 1_2:-45730646 | Msa0072700:intron |
| ACATCGGGATGATCAAAAGG+AGG | 0.679406 | 1_2:+45730530 | None:intergenic |
| GGCGAAACCTTCAACCTCGG+AGG | 0.692911 | 1_2:+45731952 | None:intergenic |
| ACCGCTCCAACGTAACCAGG+TGG | 0.696827 | 1_2:+45731913 | None:intergenic |
| TTCACAGGTGAAGATAATTG+GGG | 0.702347 | 1_2:-45730271 | Msa0072700:intron |
| ATAGTCATACCCAAGTCCGG+TGG | 0.715971 | 1_2:+45727681 | None:intergenic |
| GGTTAGGGTGAAGAGTAGTG+TGG | 0.726653 | 1_2:+45732070 | None:intergenic |
| GTTCCTGACAGGACACGTGG+TGG | 0.729331 | 1_2:-45731892 | Msa0072700:CDS |
| CAAGAGATTGAATTGCAACG+CGG | 0.735011 | 1_2:-45730979 | Msa0072700:CDS |
| CAAGTATTATGGACTCAAGG+GGG | 0.741660 | 1_2:-45728952 | Msa0072700:CDS |
| AATAAAGAGATATTCCATCG+TGG | 0.751711 | 1_2:+45727907 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATAAATAAAAAAT+TGG | + | chr1_2:45731153-45731172 | None:intergenic | 0.0% |
| !!! | AATTTTTTATTTATAAATTA+TGG | - | chr1_2:45731152-45731171 | Msa0072700:intron | 0.0% |
| !!! | ATTTTTTATTTATAAATTAT+GGG | - | chr1_2:45731153-45731172 | Msa0072700:intron | 0.0% |
| !! | TTATAATTATTATGAAATTG+TGG | - | chr1_2:45726799-45726818 | Msa0072700:intron | 10.0% |
| !!! | AGTTTTCAAAAAAAAAAAAA+AGG | - | chr1_2:45728621-45728640 | Msa0072700:intron | 10.0% |
| !! | TTATAAAAATTCAAAATGAA+GGG | + | chr1_2:45729665-45729684 | None:intergenic | 10.0% |
| !! | TTTATAAAAATTCAAAATGA+AGG | + | chr1_2:45729666-45729685 | None:intergenic | 10.0% |
| !! | GTAAAACATAATATATAAAT+GGG | + | chr1_2:45730371-45730390 | None:intergenic | 10.0% |
| !! | AGTAAAACATAATATATAAA+TGG | + | chr1_2:45730372-45730391 | None:intergenic | 10.0% |
| !!! | ATTTATATATTATGTTTTAC+TGG | - | chr1_2:45730371-45730390 | Msa0072700:intron | 10.0% |
| !!! | TATGTTTAAAATTTTGAATT+TGG | - | chr1_2:45730420-45730439 | Msa0072700:CDS | 10.0% |
| !!! | TTTGAAATTTTCTTTAATTA+TGG | - | chr1_2:45730498-45730517 | Msa0072700:CDS | 10.0% |
| !! | ACAAAAAAATAAATTGAATT+TGG | - | chr1_2:45730599-45730618 | Msa0072700:CDS | 10.0% |
| !!! | TTTTGTATTTGTTTTAAAAA+TGG | + | chr1_2:45731363-45731382 | None:intergenic | 10.0% |
| !!! | AAACTTTTGAATTTTAAATT+TGG | - | chr1_2:45731486-45731505 | Msa0072700:intron | 10.0% |
| !! | ACTAAATTAATATTATAAGA+TGG | + | chr1_2:45731681-45731700 | None:intergenic | 10.0% |
| !!! | GTTAATTTTTTGTTTTGTTT+TGG | - | chr1_2:45726312-45726331 | Msa0072700:intron | 15.0% |
| !!! | ATCAAAAATTGATAATAAAC+AGG | + | chr1_2:45729350-45729369 | None:intergenic | 15.0% |
| !!! | TATTTTATTATTCATTGTGT+TGG | - | chr1_2:45729494-45729513 | Msa0072700:intron | 15.0% |
| !!! | GTTATTATGTTTTATACTAT+CGG | - | chr1_2:45730396-45730415 | Msa0072700:CDS | 15.0% |
| !! | ATAAAAATGTCTGATTAAAA+TGG | - | chr1_2:45730470-45730489 | Msa0072700:CDS | 15.0% |
| !! | TAAAAATGTCTGATTAAAAT+GGG | - | chr1_2:45730471-45730490 | Msa0072700:CDS | 15.0% |
| !!! | AAATTGAATTTGGATTTTTT+TGG | - | chr1_2:45730609-45730628 | Msa0072700:CDS | 15.0% |
| !!! | AGAAAATCTTTTTTCTTTTA+AGG | + | chr1_2:45731192-45731211 | None:intergenic | 15.0% |
| !!! | AAATTTTTCTAAAAAACATC+TGG | + | chr1_2:45731225-45731244 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTCCAAAACAAA+TGG | - | chr1_2:45731321-45731340 | Msa0072700:intron | 15.0% |
| !! | ATAATAAAACATTCATTGTT+TGG | + | chr1_2:45731814-45731833 | None:intergenic | 15.0% |
| !! | TTGTTAATATTCATAATTGA+GGG | - | chr1_2:45732183-45732202 | Msa0072700:five_prime_UTR | 15.0% |
| !!! | TTATCATATTTTAATTCAAC+TGG | + | chr1_2:45732229-45732248 | None:intergenic | 15.0% |
| !! | TATTATTCATAAACTTGTCA+AGG | + | chr1_2:45726526-45726545 | None:intergenic | 20.0% |
| !! | AATTCAAAAATTGTGTGTAT+TGG | + | chr1_2:45726601-45726620 | None:intergenic | 20.0% |
| !!! | ATATGTTGTTTATGAAATTG+TGG | - | chr1_2:45726767-45726786 | Msa0072700:intron | 20.0% |
| !! | TCTTGTTGAAGAAATTAATA+TGG | - | chr1_2:45727231-45727250 | Msa0072700:intron | 20.0% |
| !! | ATTACACAACAAAAAAAGTT+CGG | + | chr1_2:45728261-45728280 | None:intergenic | 20.0% |
| !! | AGAATTATTTAATGCTTCAT+TGG | - | chr1_2:45728284-45728303 | Msa0072700:intron | 20.0% |
| !!! | TTCATTGGTTTATATATACT+TGG | - | chr1_2:45728299-45728318 | Msa0072700:intron | 20.0% |
| !!! | AAAAAAAAATCTGGAGTTAA+CGG | + | chr1_2:45728431-45728450 | None:intergenic | 20.0% |
| !! | CCAGATAAAAAAAAAAAATC+TGG | + | chr1_2:45728440-45728459 | None:intergenic | 20.0% |
| !!! | CCAGATTTTTTTTTTTTATC+TGG | - | chr1_2:45728437-45728456 | Msa0072700:intron | 20.0% |
| !! | TGGTACAATTATATGAATTT+GGG | - | chr1_2:45728651-45728670 | Msa0072700:CDS | 20.0% |
| !!! | ATTTTACTCTGTACTTTTAA+AGG | - | chr1_2:45728679-45728698 | Msa0072700:CDS | 20.0% |
| !! | TTTGTACATTAAATGGAAAT+TGG | - | chr1_2:45728837-45728856 | Msa0072700:CDS | 20.0% |
| !!! | TAATAAAATATTATTGGCCT+TGG | + | chr1_2:45729484-45729503 | None:intergenic | 20.0% |
| !! | ATTTAGTACTTAACTTTGTT+TGG | + | chr1_2:45729718-45729737 | None:intergenic | 20.0% |
| !! | TTTCAAAACAAAGTTAAACT+TGG | + | chr1_2:45729901-45729920 | None:intergenic | 20.0% |
| !!! | TTTTGAAAACATTTTTCAGA+TGG | - | chr1_2:45729913-45729932 | Msa0072700:intron | 20.0% |
| !!! | TTTGAAAACATTTTTCAGAT+GGG | - | chr1_2:45729914-45729933 | Msa0072700:intron | 20.0% |
| !!! | AATACTGCATGTTTTTTTTT+TGG | - | chr1_2:45730103-45730122 | Msa0072700:CDS | 20.0% |
| !!! | ATGCATTGATTGATTATTTT+AGG | - | chr1_2:45730313-45730332 | Msa0072700:intron | 20.0% |
| !!! | TAGAGTTATGTTTATTTTAG+AGG | - | chr1_2:45730658-45730677 | Msa0072700:intron | 20.0% |
| !! | TATTACATAACTTCAAAGAT+TGG | - | chr1_2:45730691-45730710 | Msa0072700:intron | 20.0% |
| !! | ATTACATAACTTCAAAGATT+GGG | - | chr1_2:45730692-45730711 | Msa0072700:intron | 20.0% |
| !! | CAAATTAGGTAAATAAAAAG+TGG | - | chr1_2:45730916-45730935 | Msa0072700:intron | 20.0% |
| !! | TCTTCAAAAGCTAATTAAAA+TGG | + | chr1_2:45731095-45731114 | None:intergenic | 20.0% |
| !! | AAAAATGGTTATCTAACATA+GGG | + | chr1_2:45731348-45731367 | None:intergenic | 20.0% |
| !! | TAAAAATGGTTATCTAACAT+AGG | + | chr1_2:45731349-45731368 | None:intergenic | 20.0% |
| !!! | TTGTTAGGTTTTTGTTAAAA+TGG | + | chr1_2:45731773-45731792 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTTGGTTTTTTAA+GGG | + | chr1_2:45731796-45731815 | None:intergenic | 20.0% |
| !! | CTTGTTAATATTCATAATTG+AGG | - | chr1_2:45732182-45732201 | Msa0072700:five_prime_UTR | 20.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr1_2:45726400-45726419 | None:intergenic | 25.0% |
| !! | CACACAATTTTTGAATTTTC+TGG | - | chr1_2:45726604-45726623 | Msa0072700:intron | 25.0% |
| !!! | TGATGAGTTTTAGTTAAGAT+TGG | - | chr1_2:45727064-45727083 | Msa0072700:intron | 25.0% |
| !!! | TTTTAACTCTTCGATTCTTA+AGG | + | chr1_2:45727180-45727199 | None:intergenic | 25.0% |
| !!! | GAAACAAACAAAGTATTTTC+TGG | + | chr1_2:45727203-45727222 | None:intergenic | 25.0% |
| ! | TCTGCAAACAATAACAAATT+TGG | - | chr1_2:45728177-45728196 | Msa0072700:intron | 25.0% |
| !! | ACAAATTTGGAATTGATTGA+TGG | - | chr1_2:45728190-45728209 | Msa0072700:intron | 25.0% |
| !!! | TTTTTTACCTCTCTGTATTA+TGG | - | chr1_2:45728334-45728353 | Msa0072700:CDS | 25.0% |
| !! | AAAAAAAATCTGGAGTTAAC+GGG | + | chr1_2:45728430-45728449 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAAGGATGCATG+TGG | - | chr1_2:45728631-45728650 | Msa0072700:intron | 25.0% |
| ! | GTGGTACAATTATATGAATT+TGG | - | chr1_2:45728650-45728669 | Msa0072700:CDS | 25.0% |
| ! | AAAATAATTCCCAATTCTCA+CGG | + | chr1_2:45728797-45728816 | None:intergenic | 25.0% |
| ! | TTAATGTACAAAACATTCGA+AGG | + | chr1_2:45728829-45728848 | None:intergenic | 25.0% |
| !! | CGAATGTTTTGTACATTAAA+TGG | - | chr1_2:45728830-45728849 | Msa0072700:CDS | 25.0% |
| ! | ACATGAATTTCGATAAACTT+AGG | - | chr1_2:45729036-45729055 | Msa0072700:intron | 25.0% |
| !!! | TTTCAAACAGTTTTGTGAAT+TGG | - | chr1_2:45729136-45729155 | Msa0072700:intron | 25.0% |
| !!! | ACTGTTATTTTTTCCAAAAC+AGG | - | chr1_2:45729178-45729197 | Msa0072700:intron | 25.0% |
| !!! | CTGTTATTTTTTCCAAAACA+GGG | - | chr1_2:45729179-45729198 | Msa0072700:intron | 25.0% |
| !!! | TGCATTTCTTTTAGTTCTAA+GGG | + | chr1_2:45729543-45729562 | None:intergenic | 25.0% |
| ! | ACAAGACCATTAAATCAAAT+GGG | + | chr1_2:45729814-45729833 | None:intergenic | 25.0% |
| ! | ACGTGTTTAGTAAACATTAT+CGG | + | chr1_2:45729848-45729867 | None:intergenic | 25.0% |
| ! | AAATGTATTAGTTGGAATTC+AGG | - | chr1_2:45730195-45730214 | Msa0072700:CDS | 25.0% |
| ! | CACTTGTCATAAAAAATTAC+TGG | - | chr1_2:45730336-45730355 | Msa0072700:intron | 25.0% |
| ! | TTGTCATAAAAAATTACTGG+CGG | - | chr1_2:45730339-45730358 | Msa0072700:intron | 25.0% |
| ! | AATTTGGAAAATTGTGTTGA+GGG | - | chr1_2:45730436-45730455 | Msa0072700:CDS | 25.0% |
| !!! | TTGGATTTTTTTGGTTGTTT+AGG | - | chr1_2:45730618-45730637 | Msa0072700:CDS | 25.0% |
| !!! | TGGATTTTTTTGGTTGTTTA+GGG | - | chr1_2:45730619-45730638 | Msa0072700:CDS | 25.0% |
| ! | CTTGGAGAAAAAAATTATGA+TGG | + | chr1_2:45731269-45731288 | None:intergenic | 25.0% |
| ! | CGAGTAATAAAGAAATTTGA+AGG | - | chr1_2:45731736-45731755 | Msa0072700:CDS | 25.0% |
| !!! | GTTTGGTTTTTGGTTTTTTA+AGG | + | chr1_2:45731797-45731816 | None:intergenic | 25.0% |
| !!! | AACATTCATTGTTTGGTTTT+TGG | + | chr1_2:45731807-45731826 | None:intergenic | 25.0% |
| ! | TAAATGGAAATTAGATCGAA+TGG | + | chr1_2:45731844-45731863 | None:intergenic | 25.0% |
| !! | TTTAGAATGGATGGTATAAA+TGG | + | chr1_2:45731860-45731879 | None:intergenic | 25.0% |
| !!! | AACTTGTGAGTATTTTAGAA+TGG | + | chr1_2:45731873-45731892 | None:intergenic | 25.0% |
| ! | ACATTGTTGGACAATAAATA+TGG | - | chr1_2:45731966-45731985 | Msa0072700:CDS | 25.0% |
| AATCAAAATGACCCAAACAA+TGG | - | chr1_2:45725770-45725789 | Msa0072700:three_prime_UTR | 30.0% | |
| ! | TTATGAATGGTTTGAAACGA+GGG | + | chr1_2:45725889-45725908 | None:intergenic | 30.0% |
| AGTATCAAAGTCTGTTGAAA+TGG | - | chr1_2:45725925-45725944 | Msa0072700:three_prime_UTR | 30.0% | |
| GACTAGTATACTTACTTCTA+AGG | - | chr1_2:45726105-45726124 | Msa0072700:intron | 30.0% | |
| !! | AAAGACTTGGTGTTAATGTT+TGG | - | chr1_2:45726179-45726198 | Msa0072700:intron | 30.0% |
| ! | TATGTTCTTGTTCTTGTTGT+TGG | - | chr1_2:45726255-45726274 | Msa0072700:intron | 30.0% |
| ATTCAATATGTCTCTCATGT+CGG | - | chr1_2:45726343-45726362 | Msa0072700:intron | 30.0% | |
| TCATGAAAAAACAGCTTATG+AGG | + | chr1_2:45726499-45726518 | None:intergenic | 30.0% | |
| !! | ATTTTTGAATTTTCTGGCAC+TGG | - | chr1_2:45726610-45726629 | Msa0072700:intron | 30.0% |
| ! | GAAATTGTGGATTTTGTGAT+AGG | - | chr1_2:45726812-45726831 | Msa0072700:intron | 30.0% |
| !! | GTATTTTCATTTAAGATCCG+TGG | - | chr1_2:45726834-45726853 | Msa0072700:intron | 30.0% |
| ! | TAAACTTCCAAAGGATGTTT+TGG | - | chr1_2:45726875-45726894 | Msa0072700:intron | 30.0% |
| TAAATGAATACCTTGATGTC+AGG | + | chr1_2:45727005-45727024 | None:intergenic | 30.0% | |
| TTCGATTCTTAAGGAAAATG+GGG | + | chr1_2:45727171-45727190 | None:intergenic | 30.0% | |
| CTTCGATTCTTAAGGAAAAT+GGG | + | chr1_2:45727172-45727191 | None:intergenic | 30.0% | |
| TCTTCGATTCTTAAGGAAAA+TGG | + | chr1_2:45727173-45727192 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTTACCTTTGCAG+TGG | - | chr1_2:45727274-45727293 | Msa0072700:intron | 30.0% |
| ! | TTGACATTTTGAATGTTCAC+AGG | - | chr1_2:45727649-45727668 | Msa0072700:CDS | 30.0% |
| CTAAATGCAAACTTTCACAA+GGG | + | chr1_2:45727895-45727914 | None:intergenic | 30.0% | |
| TCTAAATGCAAACTTTCACA+AGG | + | chr1_2:45727896-45727915 | None:intergenic | 30.0% | |
| ! | AAGTTTGCATTTAGAATCTC+TGG | - | chr1_2:45727901-45727920 | Msa0072700:CDS | 30.0% |
| !!! | TATACTCATTGTTTTGATGC+TGG | - | chr1_2:45728043-45728062 | Msa0072700:intron | 30.0% |
| AAACTGTCAAGAAAGATAGA+TGG | + | chr1_2:45728084-45728103 | None:intergenic | 30.0% | |
| TAAGTGCAGAGTAATCAAAT+TGG | - | chr1_2:45728121-45728140 | Msa0072700:intron | 30.0% | |
| ! | AATTTGGAATTGATTGATGG+AGG | - | chr1_2:45728193-45728212 | Msa0072700:intron | 30.0% |
| CAACAAAAAAAGTTCGGATT+TGG | + | chr1_2:45728255-45728274 | None:intergenic | 30.0% | |
| GGGTTAAATAGCAATGTAAT+TGG | + | chr1_2:45728410-45728429 | None:intergenic | 30.0% | |
| ATCATCCTGTTGTGATTTAA+TGG | + | chr1_2:45728465-45728484 | None:intergenic | 30.0% | |
| AATCACAACAGGATGATTAT+AGG | - | chr1_2:45728468-45728487 | Msa0072700:intron | 30.0% | |
| AATGTTATAGCAATAACCTC+CGG | - | chr1_2:45729008-45729027 | Msa0072700:CDS | 30.0% | |
| ! | AACTATGAAAAACCCTGTTT+TGG | + | chr1_2:45729194-45729213 | None:intergenic | 30.0% |
| CAAATACAGATATAGTTCCA+AGG | - | chr1_2:45729266-45729285 | Msa0072700:intron | 30.0% | |
| GATAATAAACAGGAAAGACA+CGG | + | chr1_2:45729340-45729359 | None:intergenic | 30.0% | |
| !!! | CTGCATTTCTTTTAGTTCTA+AGG | + | chr1_2:45729544-45729563 | None:intergenic | 30.0% |
| CTTAGAACTAAAAGAAATGC+AGG | - | chr1_2:45729542-45729561 | Msa0072700:intron | 30.0% | |
| ! | TAGTACTTAACTTTGTTTGG+CGG | + | chr1_2:45729715-45729734 | None:intergenic | 30.0% |
| ! | TATGGGCTTTATAAATAGCA+TGG | + | chr1_2:45729748-45729767 | None:intergenic | 30.0% |
| ATAAAGCCCATAATATGAGA+CGG | - | chr1_2:45729756-45729775 | Msa0072700:intron | 30.0% | |
| CAAGACCATTAAATCAAATG+GGG | + | chr1_2:45729813-45729832 | None:intergenic | 30.0% | |
| GACAAGACCATTAAATCAAA+TGG | + | chr1_2:45729815-45729834 | None:intergenic | 30.0% | |
| ACTTGGTCAAATACAAAAAC+AGG | + | chr1_2:45729884-45729903 | None:intergenic | 30.0% | |
| ! | AAAAATTTCATCAAAGCACC+AGG | + | chr1_2:45729995-45730014 | None:intergenic | 30.0% |
| AATAAAGAGATATTCCATCG+TGG | + | chr1_2:45730031-45730050 | None:intergenic | 30.0% | |
| GCATTAAAAGCTTGAAGAAA+AGG | + | chr1_2:45730297-45730316 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGTGTTG+AGG | - | chr1_2:45730435-45730454 | Msa0072700:CDS | 30.0% | |
| TTGTTCCATCGTATAAAATG+TGG | + | chr1_2:45730779-45730798 | None:intergenic | 30.0% | |
| TGCAAAGTAATACGAGAATT+AGG | - | chr1_2:45730964-45730983 | Msa0072700:CDS | 30.0% | |
| GCAAAGTAATACGAGAATTA+GGG | - | chr1_2:45730965-45730984 | Msa0072700:CDS | 30.0% | |
| TCAACTTGAAGAATATGAGA+TGG | + | chr1_2:45731712-45731731 | None:intergenic | 30.0% | |
| !!! | TTGGTTTTTTAAGGGTTGTT+AGG | + | chr1_2:45731788-45731807 | None:intergenic | 30.0% |
| !!! | TGTGAGTATTTTAGAATGGA+TGG | + | chr1_2:45731869-45731888 | None:intergenic | 30.0% |
| ! | TTTTCATAGGTTCTCTCAAT+TGG | - | chr1_2:45731926-45731945 | Msa0072700:CDS | 30.0% |
| ! | GTTATGAATGGTTTGAAACG+AGG | + | chr1_2:45725890-45725909 | None:intergenic | 35.0% |
| TTCAACAGACTTTGATACTG+CGG | + | chr1_2:45725924-45725943 | None:intergenic | 35.0% | |
| ! | TGTTCCTTTTATTGAGTCTC+CGG | - | chr1_2:45725952-45725971 | Msa0072700:three_prime_UTR | 35.0% |
| TGTTGAATCTCCTCTTGAAT+TGG | - | chr1_2:45726141-45726160 | Msa0072700:intron | 35.0% | |
| !! | GAGTTGATGATAGTACTTAC+AGG | + | chr1_2:45726226-45726245 | None:intergenic | 35.0% |
| !! | TGTGTTGATCATTTAGCTTG+AGG | - | chr1_2:45726744-45726763 | Msa0072700:intron | 35.0% |
| CCATCATATTATAAGCTCCA+CGG | + | chr1_2:45726854-45726873 | None:intergenic | 35.0% | |
| TATGATGGCTAAACTTCCAA+AGG | - | chr1_2:45726866-45726885 | Msa0072700:intron | 35.0% | |
| !!! | CAAAGGATGTTTTGGAGAAA+GGG | - | chr1_2:45726883-45726902 | Msa0072700:intron | 35.0% |
| !!! | AAAGGATGTTTTGGAGAAAG+GGG | - | chr1_2:45726884-45726903 | Msa0072700:intron | 35.0% |
| GTAAAATCTAGCTGATTGTC+AGG | + | chr1_2:45727117-45727136 | None:intergenic | 35.0% | |
| ATTTATCCTCTTCACGTAAG+CGG | + | chr1_2:45727538-45727557 | None:intergenic | 35.0% | |
| TGTTCACAGGTGAAGATAAT+TGG | - | chr1_2:45727662-45727681 | Msa0072700:CDS | 35.0% | |
| GTTCACAGGTGAAGATAATT+GGG | - | chr1_2:45727663-45727682 | Msa0072700:CDS | 35.0% | |
| TTCACAGGTGAAGATAATTG+GGG | - | chr1_2:45727664-45727683 | Msa0072700:CDS | 35.0% | |
| ! | TGCAATTTGTGCATCGATAA+AGG | - | chr1_2:45727856-45727875 | Msa0072700:intron | 35.0% |
| GAAGTAGTTGCCATAGATAA+TGG | + | chr1_2:45727960-45727979 | None:intergenic | 35.0% | |
| AATCTAGCCATAATACAGAG+AGG | + | chr1_2:45728344-45728363 | None:intergenic | 35.0% | |
| TATGGCTAGATTTAGTGAAG+CGG | - | chr1_2:45728352-45728371 | Msa0072700:CDS | 35.0% | |
| CTCAAATAGAGCTTCTACAA+TGG | + | chr1_2:45728714-45728733 | None:intergenic | 35.0% | |
| ACAAACAAAACAGCTCCATT+CGG | + | chr1_2:45728772-45728791 | None:intergenic | 35.0% | |
| TTGTTTGTATCCGTGAGAAT+TGG | - | chr1_2:45728784-45728803 | Msa0072700:intron | 35.0% | |
| TGTTTGTATCCGTGAGAATT+GGG | - | chr1_2:45728785-45728804 | Msa0072700:intron | 35.0% | |
| ! | GATTATCTAGGACTTGACAT+TGG | - | chr1_2:45728871-45728890 | Msa0072700:CDS | 35.0% |
| AGGACATGTTTGAGGAAAAA+AGG | - | chr1_2:45728907-45728926 | Msa0072700:CDS | 35.0% | |
| ! | TGAGGAAAAAAGGAGCATAT+TGG | - | chr1_2:45728917-45728936 | Msa0072700:CDS | 35.0% |
| GAAGCATACTGCAAGTATTA+TGG | - | chr1_2:45728972-45728991 | Msa0072700:CDS | 35.0% | |
| TGCAAGTATTATGGACTCAA+GGG | - | chr1_2:45728981-45729000 | Msa0072700:CDS | 35.0% | |
| ATCGAAATTCATGTTTGCTC+CGG | + | chr1_2:45729030-45729049 | None:intergenic | 35.0% | |
| !! | GTAACTGAACTTGCTAATGT+CGG | - | chr1_2:45729062-45729081 | Msa0072700:intron | 35.0% |
| AGAAAGCTGTTGTTCTTTAC+AGG | - | chr1_2:45729289-45729308 | Msa0072700:intron | 35.0% | |
| AAAAGAAATGCAGGAGAGAA+TGG | - | chr1_2:45729551-45729570 | Msa0072700:intron | 35.0% | |
| TACTCTCCGTCTCATATTAT+GGG | + | chr1_2:45729765-45729784 | None:intergenic | 35.0% | |
| TTACTCTCCGTCTCATATTA+TGG | + | chr1_2:45729766-45729785 | None:intergenic | 35.0% | |
| AGAACCTCATTCTGAATATC+AGG | + | chr1_2:45729947-45729966 | None:intergenic | 35.0% | |
| !! | AACATGCAGTATTTGACTTG+AGG | + | chr1_2:45730096-45730115 | None:intergenic | 35.0% |
| ! | CATTAGATTGCATTGGTCAA+CGG | + | chr1_2:45730137-45730156 | None:intergenic | 35.0% |
| TACAAGCCATTAGATTGCAT+TGG | + | chr1_2:45730144-45730163 | None:intergenic | 35.0% | |
| ATTATAGTCATACCCAAGTC+CGG | + | chr1_2:45730260-45730279 | None:intergenic | 35.0% | |
| ACATAACTTCAAAGATTGGG+AGG | - | chr1_2:45730695-45730714 | Msa0072700:intron | 35.0% | |
| TCAAAATGTGACATTGTTGG+AGG | + | chr1_2:45730744-45730763 | None:intergenic | 35.0% | |
| CTGTCAAAATGTGACATTGT+TGG | + | chr1_2:45730747-45730766 | None:intergenic | 35.0% | |
| !! | CAACAATGTCACATTTTGAC+AGG | - | chr1_2:45730745-45730764 | Msa0072700:intron | 35.0% |
| ! | AGCTACCACATTTTATACGA+TGG | - | chr1_2:45730771-45730790 | Msa0072700:intron | 35.0% |
| TGTTCTATGAAATGCAAGTG+AGG | - | chr1_2:45730887-45730906 | Msa0072700:intron | 35.0% | |
| GTTCTATGAAATGCAAGTGA+GGG | - | chr1_2:45730888-45730907 | Msa0072700:intron | 35.0% | |
| ! | AACATAGGGTCCATTTGTTT+TGG | + | chr1_2:45731334-45731353 | None:intergenic | 35.0% |
| TCGATCATTCATCTAACAAG+AGG | - | chr1_2:45731621-45731640 | Msa0072700:intron | 35.0% | |
| CGATCATTCATCTAACAAGA+GGG | - | chr1_2:45731622-45731641 | Msa0072700:intron | 35.0% | |
| ! | ACTTTTGTACGAGACATTGT+TGG | - | chr1_2:45731953-45731972 | Msa0072700:CDS | 35.0% |
| CAGAAATTTGGTCAAGTAGA+AGG | + | chr1_2:45732041-45732060 | None:intergenic | 35.0% | |
| CTACTTGACCAAATTTCTGA+TGG | - | chr1_2:45732042-45732061 | Msa0072700:CDS | 35.0% | |
| CATTACGACCATCAGAAATT+TGG | + | chr1_2:45732053-45732072 | None:intergenic | 35.0% | |
| CAAATTTCTGATGGTCGTAA+TGG | - | chr1_2:45732051-45732070 | Msa0072700:CDS | 35.0% | |
| ! | CGTAATGGAAATCGAATATC+AGG | - | chr1_2:45732066-45732085 | Msa0072700:CDS | 35.0% |
| CAAAATGACCCAAACAATGG+AGG | - | chr1_2:45725773-45725792 | Msa0072700:three_prime_UTR | 40.0% | |
| ! | ATGGTTTGAAACGAGGGTTA+GGG | + | chr1_2:45725883-45725902 | None:intergenic | 40.0% |
| ! | AATGGTTTGAAACGAGGGTT+AGG | + | chr1_2:45725884-45725903 | None:intergenic | 40.0% |
| TGATTGTGGAGTAAGTGCTA+TGG | - | chr1_2:45726075-45726094 | Msa0072700:intron | 40.0% | |
| GATTGTGGAGTAAGTGCTAT+GGG | - | chr1_2:45726076-45726095 | Msa0072700:intron | 40.0% | |
| CCAAGTCTTTCAGAAAGCTT+TGG | + | chr1_2:45726169-45726188 | None:intergenic | 40.0% | |
| ! | CCAAAGCTTTCTGAAAGACT+TGG | - | chr1_2:45726166-45726185 | Msa0072700:intron | 40.0% |
| CCGTGGAGCTTATAATATGA+TGG | - | chr1_2:45726851-45726870 | Msa0072700:intron | 40.0% | |
| CCTTTCTCCAAAACATCCTT+TGG | + | chr1_2:45726885-45726904 | None:intergenic | 40.0% | |
| !!! | CCAAAGGATGTTTTGGAGAA+AGG | - | chr1_2:45726882-45726901 | Msa0072700:intron | 40.0% |
| ATTCAATCTCTTGGCAGACA+TGG | + | chr1_2:45726949-45726968 | None:intergenic | 40.0% | |
| CAAGAGATTGAATTGCAACG+CGG | - | chr1_2:45726956-45726975 | Msa0072700:intron | 40.0% | |
| TGTCAGGAATCAAACTTGAG+TGG | + | chr1_2:45727101-45727120 | None:intergenic | 40.0% | |
| TAATCCGAATTTCGGTTACG+AGG | + | chr1_2:45727143-45727162 | None:intergenic | 40.0% | |
| GGGCTTAGTAATCCGAATTT+CGG | + | chr1_2:45727151-45727170 | None:intergenic | 40.0% | |
| CATCGTAGGAATCTCCAATA+AGG | + | chr1_2:45727332-45727351 | None:intergenic | 40.0% | |
| ATATGCTTGTGCTTCATCGT+AGG | + | chr1_2:45727346-45727365 | None:intergenic | 40.0% | |
| ATGACATCGGGATGATCAAA+AGG | + | chr1_2:45727411-45727430 | None:intergenic | 40.0% | |
| TGATCATCCCGATGTCATTA+TGG | - | chr1_2:45727413-45727432 | Msa0072700:intron | 40.0% | |
| GATCATCCCGATGTCATTAT+GGG | - | chr1_2:45727414-45727433 | Msa0072700:intron | 40.0% | |
| AGGCACAAAGATTGCATGAA+CGG | + | chr1_2:45727484-45727503 | None:intergenic | 40.0% | |
| ! | AATCCAGAGGTTTGTTTGCA+TGG | - | chr1_2:45727555-45727574 | Msa0072700:intron | 40.0% |
| GTGCAATGGAAAAACCTATC+AGG | + | chr1_2:45727587-45727606 | None:intergenic | 40.0% | |
| CAACTCTTCCAAGTGAACAA+AGG | + | chr1_2:45727613-45727632 | None:intergenic | 40.0% | |
| !! | TTGGCTTTGTCACTTCATCA+TGG | - | chr1_2:45727710-45727729 | Msa0072700:CDS | 40.0% |
| TCGATGCACAAATTGCATCA+CGG | + | chr1_2:45727853-45727872 | None:intergenic | 40.0% | |
| GCAAACTTTCACAAGGGAAA+GGG | + | chr1_2:45727889-45727908 | None:intergenic | 40.0% | |
| TGCAAACTTTCACAAGGGAA+AGG | + | chr1_2:45727890-45727909 | None:intergenic | 40.0% | |
| ACACACACCACCATTATCTA+TGG | - | chr1_2:45727947-45727966 | Msa0072700:CDS | 40.0% | |
| ! | GTAGTTGCCATAGATAATGG+TGG | + | chr1_2:45727957-45727976 | None:intergenic | 40.0% |
| ATGGCTAGATTTAGTGAAGC+GGG | - | chr1_2:45728353-45728372 | Msa0072700:CDS | 40.0% | |
| !! | TGGTGCCATTAAATCACAAC+AGG | - | chr1_2:45728457-45728476 | Msa0072700:intron | 40.0% |
| ATTATAGGTTCGATTCCCCA+CGG | - | chr1_2:45728483-45728502 | Msa0072700:intron | 40.0% | |
| AGTCCATACAGAGAAAACTC+TGG | - | chr1_2:45728524-45728543 | Msa0072700:intron | 40.0% | |
| ! | AAGCCAGAGTTTTCTCTGTA+TGG | + | chr1_2:45728530-45728549 | None:intergenic | 40.0% |
| GAAGCTCTATTTGAGTACAC+AGG | - | chr1_2:45728719-45728738 | Msa0072700:intron | 40.0% | |
| !! | GAAAGCACTGCAGATTATCT+AGG | - | chr1_2:45728859-45728878 | Msa0072700:CDS | 40.0% |
| ACATTGGTAAACCTTGTTGC+AGG | - | chr1_2:45728887-45728906 | Msa0072700:CDS | 40.0% | |
| CTGCAAGTATTATGGACTCA+AGG | - | chr1_2:45728980-45728999 | Msa0072700:CDS | 40.0% | |
| GCAAGTATTATGGACTCAAG+GGG | - | chr1_2:45728982-45729001 | Msa0072700:CDS | 40.0% | |
| CAAGTATTATGGACTCAAGG+GGG | - | chr1_2:45728983-45729002 | Msa0072700:CDS | 40.0% | |
| ! | CAAAACTGTTTGAAACTGCC+AGG | + | chr1_2:45729131-45729150 | None:intergenic | 40.0% |
| GAACTGAATTTCTTCTGACC+TGG | - | chr1_2:45729214-45729233 | Msa0072700:intron | 40.0% | |
| AAGAACAACAGCTTTCTCCT+TGG | + | chr1_2:45729286-45729305 | None:intergenic | 40.0% | |
| GATGTCAATATTCTGAGCAG+TGG | + | chr1_2:45729386-45729405 | None:intergenic | 40.0% | |
| GACAACTAAGTGTTATGCCA+AGG | - | chr1_2:45729464-45729483 | Msa0072700:intron | 40.0% | |
| GAAAGATCATTTGCGTCACA+TGG | - | chr1_2:45729620-45729639 | Msa0072700:intron | 40.0% | |
| ! | CTTAACTTTGTTTGGCGGTT+GGG | + | chr1_2:45729710-45729729 | None:intergenic | 40.0% |
| ! | ACTTAACTTTGTTTGGCGGT+TGG | + | chr1_2:45729711-45729730 | None:intergenic | 40.0% |
| ! | AGCTGCCCCATTTGATTTAA+TGG | - | chr1_2:45729805-45729824 | Msa0072700:intron | 40.0% |
| CTCATTCTGAATATCAGGTC+GGG | + | chr1_2:45729942-45729961 | None:intergenic | 40.0% | |
| CCTCATTCTGAATATCAGGT+CGG | + | chr1_2:45729943-45729962 | None:intergenic | 40.0% | |
| TTTACCTTTCCAGAAAGACC+TGG | - | chr1_2:45729974-45729993 | Msa0072700:intron | 40.0% | |
| ! | GATATTCCATCGTGGACTAA+AGG | + | chr1_2:45730023-45730042 | None:intergenic | 40.0% |
| TTTATTCCATTACCGTGCAC+AGG | - | chr1_2:45730045-45730064 | Msa0072700:intron | 40.0% | |
| TGCAAATTCTAACCTGTGCA+CGG | + | chr1_2:45730060-45730079 | None:intergenic | 40.0% | |
| CGTTGACCAATGCAATCTAA+TGG | - | chr1_2:45730135-45730154 | Msa0072700:CDS | 40.0% | |
| GCTGGAGCAAATGTATTAGT+TGG | - | chr1_2:45730187-45730206 | Msa0072700:CDS | 40.0% | |
| CAAAGATTGGGAGGAAGAAA+TGG | - | chr1_2:45730704-45730723 | Msa0072700:intron | 40.0% | |
| !! | CAATGTCACATTTTGACAGG+AGG | - | chr1_2:45730748-45730767 | Msa0072700:intron | 40.0% |
| TATGAAATGCAAGTGAGGGA+CGG | - | chr1_2:45730892-45730911 | Msa0072700:intron | 40.0% | |
| CTCAAGTGTAAGAGCTTTCT+TGG | + | chr1_2:45731287-45731306 | None:intergenic | 40.0% | |
| ! | TCCCTATGTTGATTGTGTCA+CGG | - | chr1_2:45731458-45731477 | Msa0072700:intron | 40.0% |
| GTGTATGCGAAAAGATATGC+CGG | - | chr1_2:45731508-45731527 | Msa0072700:intron | 40.0% | |
| CAAGTGACATCTAGAGAAAC+CGG | + | chr1_2:45731530-45731549 | None:intergenic | 40.0% | |
| TCATAGGTTCTCTCAATTGG+AGG | - | chr1_2:45731929-45731948 | Msa0072700:CDS | 40.0% | |
| CTGGAAGAAGATTGTTCAAG+TGG | + | chr1_2:45732210-45732229 | None:intergenic | 40.0% | |
| TAGTGTGGTGCATTCTGTGA+CGG | + | chr1_2:45725853-45725872 | None:intergenic | 45.0% | |
| AACAGACTTTGATACTGCGG+CGG | + | chr1_2:45725921-45725940 | None:intergenic | 45.0% | |
| ! | TCCTTTTATTGAGTCTCCGG+CGG | - | chr1_2:45725955-45725974 | Msa0072700:three_prime_UTR | 45.0% |
| GGTGGATACTGAAGTGAATC+CGG | + | chr1_2:45726007-45726026 | None:intergenic | 45.0% | |
| GATTCACTTCAGTATCCACC+TGG | - | chr1_2:45726007-45726026 | Msa0072700:intron | 45.0% | |
| TAAGCTGACGTCAGAGACTA+AGG | - | chr1_2:45726366-45726385 | Msa0072700:intron | 45.0% | |
| AAGCTGACGTCAGAGACTAA+GGG | - | chr1_2:45726367-45726386 | Msa0072700:intron | 45.0% | |
| ACGTCAGAGACTAAGGGTAA+GGG | - | chr1_2:45726373-45726392 | Msa0072700:intron | 45.0% | |
| TCAGCTGGAAATCATGCTCA+AGG | - | chr1_2:45726918-45726937 | Msa0072700:intron | 45.0% | |
| CGCGTTGCAATTCAATCTCT+TGG | + | chr1_2:45726958-45726977 | None:intergenic | 45.0% | |
| TTGATGTCAGGAGTGGTAAC+TGG | + | chr1_2:45726993-45727012 | None:intergenic | 45.0% | |
| AGTTACCACTCCTGACATCA+AGG | - | chr1_2:45726992-45727011 | Msa0072700:intron | 45.0% | |
| GAATACCTTGATGTCAGGAG+TGG | + | chr1_2:45727000-45727019 | None:intergenic | 45.0% | |
| CCTACCTCGTAACCGAAATT+CGG | - | chr1_2:45727136-45727155 | Msa0072700:intron | 45.0% | |
| ACCTTTGCAGTGGAAATCTG+TGG | - | chr1_2:45727284-45727303 | Msa0072700:intron | 45.0% | |
| TCCACAGATTTCCACTGCAA+AGG | + | chr1_2:45727288-45727307 | None:intergenic | 45.0% | |
| ! | TGCTAAGAAGCGTGCTATAG+AGG | - | chr1_2:45727365-45727384 | Msa0072700:intron | 45.0% |
| ! | AAGAAGCGTGCTATAGAGGA+TGG | - | chr1_2:45727369-45727388 | Msa0072700:intron | 45.0% |
| ACATCGGGATGATCAAAAGG+AGG | + | chr1_2:45727408-45727427 | None:intergenic | 45.0% | |
| TCCCTGACCCATAATGACAT+CGG | + | chr1_2:45727424-45727443 | None:intergenic | 45.0% | |
| ATTATGGGTCAGGGAACTGT+CGG | - | chr1_2:45727429-45727448 | Msa0072700:intron | 45.0% | |
| GGCACAAAGATTGCATGAAC+GGG | + | chr1_2:45727483-45727502 | None:intergenic | 45.0% | |
| TCATGCAATCTTTGTGCCTG+TGG | - | chr1_2:45727485-45727504 | Msa0072700:intron | 45.0% | |
| CATGCAATCTTTGTGCCTGT+GGG | - | chr1_2:45727486-45727505 | Msa0072700:intron | 45.0% | |
| CGTGAAGAGGATAAATCCAG+AGG | - | chr1_2:45727542-45727561 | Msa0072700:intron | 45.0% | |
| ACACCATGCAAACAAACCTC+TGG | + | chr1_2:45727561-45727580 | None:intergenic | 45.0% | |
| !! | TTGCATGGTGTTGTCCTGAT+AGG | - | chr1_2:45727570-45727589 | Msa0072700:intron | 45.0% |
| ACAGGTGAAGATAATTGGGG+TGG | - | chr1_2:45727667-45727686 | Msa0072700:CDS | 45.0% | |
| ACCCACTGATGCAAATGCAT+TGG | - | chr1_2:45727691-45727710 | Msa0072700:CDS | 45.0% | |
| GCCAATGCATTTGCATCAGT+GGG | + | chr1_2:45727695-45727714 | None:intergenic | 45.0% | |
| AGCCAATGCATTTGCATCAG+TGG | + | chr1_2:45727696-45727715 | None:intergenic | 45.0% | |
| ACTTCATCATGGCCAAAGAG+TGG | - | chr1_2:45727721-45727740 | Msa0072700:CDS | 45.0% | |
| ! | TCATGGCCAAAGAGTGGTTT+TGG | - | chr1_2:45727727-45727746 | Msa0072700:CDS | 45.0% |
| AGATGGTGTGGCTGTAAAAG+AGG | - | chr1_2:45727769-45727788 | Msa0072700:intron | 45.0% | |
| !! | TTGTGCAAGGAGTTGGTAGA+TGG | - | chr1_2:45727812-45727831 | Msa0072700:intron | 45.0% |
| CTAGATTTAGTGAAGCGGGT+TGG | - | chr1_2:45728357-45728376 | Msa0072700:CDS | 45.0% | |
| TAAGCTGTCATTCGTCCGAA+TGG | - | chr1_2:45728754-45728773 | Msa0072700:intron | 45.0% | |
| CTCAAACATGTCCTGCAACA+AGG | + | chr1_2:45728901-45728920 | None:intergenic | 45.0% | |
| CTTGTTGCAGGACATGTTTG+AGG | - | chr1_2:45728899-45728918 | Msa0072700:CDS | 45.0% | |
| GAAATTCATGTTTGCTCCGG+AGG | + | chr1_2:45729027-45729046 | None:intergenic | 45.0% | |
| TCTGCTGTTAACTGTCATGC+CGG | - | chr1_2:45729100-45729119 | Msa0072700:intron | 45.0% | |
| TGAATTTCTTCTGACCTGGC+AGG | - | chr1_2:45729218-45729237 | Msa0072700:intron | 45.0% | |
| ! | ATTGTGTTGGTGTGCAGTGT+TGG | - | chr1_2:45729507-45729526 | Msa0072700:intron | 45.0% |
| ! | CAATCTCTCAGACGTTGACT+TGG | - | chr1_2:45729596-45729615 | Msa0072700:intron | 45.0% |
| CCGACCTGATATTCAGAATG+AGG | - | chr1_2:45729940-45729959 | Msa0072700:intron | 45.0% | |
| ! | ATCAAAGCACCAGGTCTTTC+TGG | + | chr1_2:45729986-45730005 | None:intergenic | 45.0% |
| TAGACTCCTTTAGTCCACGA+TGG | - | chr1_2:45730014-45730033 | Msa0072700:intron | 45.0% | |
| TTCTAACCTGTGCACGGTAA+TGG | + | chr1_2:45730054-45730073 | None:intergenic | 45.0% | |
| ! | ATGGCTTGTACTTGCTGCTT+CGG | - | chr1_2:45730154-45730173 | Msa0072700:CDS | 45.0% |
| AGATTGGGAGGAAGAAATGG+TGG | - | chr1_2:45730707-45730726 | Msa0072700:intron | 45.0% | |
| ! | GGAGGAAGAAATGGTGGAAA+CGG | - | chr1_2:45730713-45730732 | Msa0072700:intron | 45.0% |
| ! | AAGAAATGGTGGAAACGGAG+TGG | - | chr1_2:45730718-45730737 | Msa0072700:intron | 45.0% |
| AAGTGAGGGACGGACAAATT+AGG | - | chr1_2:45730902-45730921 | Msa0072700:intron | 45.0% | |
| CCCGTGACACAATCAACATA+GGG | + | chr1_2:45731462-45731481 | None:intergenic | 45.0% | |
| ! | CCCTATGTTGATTGTGTCAC+GGG | - | chr1_2:45731459-45731478 | Msa0072700:intron | 45.0% |
| TCCCGTGACACAATCAACAT+AGG | + | chr1_2:45731463-45731482 | None:intergenic | 45.0% | |
| CGGTTTCTCTAGATGTCACT+TGG | - | chr1_2:45731528-45731547 | Msa0072700:intron | 45.0% | |
| !!! | ATTTTTATTAATTTGTTTTT+TGG | - | chr1_2:45726711-45726730 | Msa0072700:intron | 5.0% |
| !!! | TTTTTATTAATTTGTTTTTT+GGG | - | chr1_2:45726712-45726731 | Msa0072700:intron | 5.0% |
| !! | AATGAATAATAAAATATTAT+TGG | + | chr1_2:45729490-45729509 | None:intergenic | 5.0% |
| !! | AGATTAAAATAAAAATAATT+TGG | + | chr1_2:45731426-45731445 | None:intergenic | 5.0% |
| !! | TTAGTTATTAAATATTAATT+TGG | - | chr1_2:45731646-45731665 | Msa0072700:intron | 5.0% |
| !!! | ATATATATATTTTTTTTCAT+AGG | - | chr1_2:45731913-45731932 | Msa0072700:CDS | 5.0% |
| TCGTAGCGCCTCCATTGTTT+GGG | + | chr1_2:45725784-45725803 | None:intergenic | 50.0% | |
| ATCGTAGCGCCTCCATTGTT+TGG | + | chr1_2:45725785-45725804 | None:intergenic | 50.0% | |
| GCATTCTGTGACGGTGGTTA+CGG | + | chr1_2:45725844-45725863 | None:intergenic | 50.0% | |
| GGTTAGGGTGAAGAGTAGTG+TGG | + | chr1_2:45725868-45725887 | None:intergenic | 50.0% | |
| ! | TTTTATTGAGTCTCCGGCGG+CGG | - | chr1_2:45725958-45725977 | Msa0072700:three_prime_UTR | 50.0% |
| CAGTATCCACCTGGTTACGT+TGG | - | chr1_2:45726016-45726035 | Msa0072700:intron | 50.0% | |
| ! | GGTGGTGATGAAGGTGATTG+TGG | - | chr1_2:45726061-45726080 | Msa0072700:intron | 50.0% |
| ! | AGCTTTGGCGCCAATTCAAG+AGG | + | chr1_2:45726154-45726173 | None:intergenic | 50.0% |
| GACGTCAGAGACTAAGGGTA+AGG | - | chr1_2:45726372-45726391 | Msa0072700:intron | 50.0% | |
| ACTAAGGGTAAGGGTCCGTT+TGG | - | chr1_2:45726382-45726401 | Msa0072700:intron | 50.0% | |
| GGGGTTATATGCTCTTCAGC+TGG | - | chr1_2:45726903-45726922 | Msa0072700:intron | 50.0% | |
| CCGAATTTCGGTTACGAGGT+AGG | + | chr1_2:45727139-45727158 | None:intergenic | 50.0% | |
| TGCAGTGGAAATCTGTGGAG+AGG | - | chr1_2:45727289-45727308 | Msa0072700:intron | 50.0% | |
| AGTGGAAATCTGTGGAGAGG+TGG | - | chr1_2:45727292-45727311 | Msa0072700:intron | 50.0% | |
| GTGGAAATCTGTGGAGAGGT+GGG | - | chr1_2:45727293-45727312 | Msa0072700:intron | 50.0% | |
| TGGAAATCTGTGGAGAGGTG+GGG | - | chr1_2:45727294-45727313 | Msa0072700:intron | 50.0% | |
| !! | GGTGCTACTGTGGTCCTTAT+TGG | - | chr1_2:45727315-45727334 | Msa0072700:intron | 50.0% |
| TCCCGATGTCATTATGGGTC+AGG | - | chr1_2:45727419-45727438 | Msa0072700:intron | 50.0% | |
| CCCTGACCCATAATGACATC+GGG | + | chr1_2:45727423-45727442 | None:intergenic | 50.0% | |
| CCCGATGTCATTATGGGTCA+GGG | - | chr1_2:45727420-45727439 | Msa0072700:intron | 50.0% | |
| TTATGGGTCAGGGAACTGTC+GGG | - | chr1_2:45727430-45727449 | Msa0072700:intron | 50.0% | |
| ! | GTATTGCCGCTTACGTGAAG+AGG | - | chr1_2:45727529-45727548 | Msa0072700:intron | 50.0% |
| ! | GTGAACAAAGGCACGTGCAA+TGG | + | chr1_2:45727601-45727620 | None:intergenic | 50.0% |
| TGCACGTGCCTTTGTTCACT+TGG | - | chr1_2:45727602-45727621 | Msa0072700:three_prime_UTR | 50.0% | |
| CCTGGTCCAAAACCACTCTT+TGG | + | chr1_2:45727736-45727755 | None:intergenic | 50.0% | |
| !!! | CCAAAGAGTGGTTTTGGACC+AGG | - | chr1_2:45727733-45727752 | Msa0072700:CDS | 50.0% |
| !!! | AGAGTGGTTTTGGACCAGGT+TGG | - | chr1_2:45727737-45727756 | Msa0072700:CDS | 50.0% |
| CATCTGCAAATCCTCCAACC+TGG | + | chr1_2:45727754-45727773 | None:intergenic | 50.0% | |
| ! | CAGGTTGGAGGATTTGCAGA+TGG | - | chr1_2:45727752-45727771 | Msa0072700:CDS | 50.0% |
| TGGAGGATTTGCAGATGGTG+TGG | - | chr1_2:45727757-45727776 | Msa0072700:CDS | 50.0% | |
| GGTGTGGCTGTAAAAGAGGT+TGG | - | chr1_2:45727773-45727792 | Msa0072700:intron | 50.0% | |
| GGAAACTTTCCGCTTGTGCA+AGG | - | chr1_2:45727799-45727818 | Msa0072700:intron | 50.0% | |
| TTTCCGCTTGTGCAAGGAGT+TGG | - | chr1_2:45727805-45727824 | Msa0072700:intron | 50.0% | |
| CTACCAACTCCTTGCACAAG+CGG | + | chr1_2:45727811-45727830 | None:intergenic | 50.0% | |
| !! | ATTCCCCACGGTGCTGATTT+CGG | - | chr1_2:45728495-45728514 | Msa0072700:intron | 50.0% |
| ! | GCTTTTAACCAACCCTCGCA+AGG | - | chr1_2:45728546-45728565 | Msa0072700:intron | 50.0% |
| TTTAACCAACCCTCGCAAGG+TGG | - | chr1_2:45728549-45728568 | Msa0072700:intron | 50.0% | |
| !! | ATTGGACCCCTCGGATTAGT+CGG | - | chr1_2:45728580-45728599 | Msa0072700:intron | 50.0% |
| CAAGAACCGACTAATCCGAG+GGG | + | chr1_2:45728589-45728608 | None:intergenic | 50.0% | |
| GCAAGAACCGACTAATCCGA+GGG | + | chr1_2:45728590-45728609 | None:intergenic | 50.0% | |
| ! | AGGAGCATATTGGAACCAGC+AGG | - | chr1_2:45728927-45728946 | Msa0072700:CDS | 50.0% |
| ATTTCTTCTGACCTGGCAGG+TGG | - | chr1_2:45729221-45729240 | Msa0072700:intron | 50.0% | |
| TTTCTTCTGACCTGGCAGGT+GGG | - | chr1_2:45729222-45729241 | Msa0072700:intron | 50.0% | |
| ! | AGCACCAGGTCTTTCTGGAA+AGG | + | chr1_2:45729981-45730000 | None:intergenic | 50.0% |
| ! | TTGTACTTGCTGCTTCGGAC+AGG | - | chr1_2:45730159-45730178 | Msa0072700:CDS | 50.0% |
| ! | TGTACTTGCTGCTTCGGACA+GGG | - | chr1_2:45730160-45730179 | Msa0072700:CDS | 50.0% |
| AATTCCTCCATCTCGCTGCT+TGG | + | chr1_2:45730223-45730242 | None:intergenic | 50.0% | |
| GAATTCAACGATCGTGCCAC+CGG | - | chr1_2:45730238-45730257 | Msa0072700:CDS | 50.0% | |
| ATAGTCATACCCAAGTCCGG+TGG | + | chr1_2:45730257-45730276 | None:intergenic | 50.0% | |
| TTCTGTGACGGTGGTTACGG+AGG | + | chr1_2:45725841-45725860 | None:intergenic | 55.0% | |
| TGTGGTGCATTCTGTGACGG+TGG | + | chr1_2:45725850-45725869 | None:intergenic | 55.0% | |
| GCGGCGGTGGTTGTTATGAA+TGG | + | chr1_2:45725902-45725921 | None:intergenic | 55.0% | |
| AGACTTTGATACTGCGGCGG+CGG | + | chr1_2:45725918-45725937 | None:intergenic | 55.0% | |
| GCCGCCGGAGACTCAATAAA+AGG | + | chr1_2:45725959-45725978 | None:intergenic | 55.0% | |
| TCCGAGGTTGAAGGTTTCGC+CGG | - | chr1_2:45725985-45726004 | Msa0072700:three_prime_UTR | 55.0% | |
| TCCGGCGAAACCTTCAACCT+CGG | + | chr1_2:45725989-45726008 | None:intergenic | 55.0% | |
| TCCACCTGGTTACGTTGGAG+CGG | - | chr1_2:45726021-45726040 | Msa0072700:intron | 55.0% | |
| ! | AGGACACGTGGTGGTGATGA+AGG | - | chr1_2:45726052-45726071 | Msa0072700:intron | 55.0% |
| CATGAACGGGACGCTTCATC+TGG | + | chr1_2:45727470-45727489 | None:intergenic | 55.0% | |
| GCAATCTTTGTGCCTGTGGG+AGG | - | chr1_2:45727489-45727508 | Msa0072700:intron | 55.0% | |
| ATCTTTGTGCCTGTGGGAGG+TGG | - | chr1_2:45727492-45727511 | Msa0072700:intron | 55.0% | |
| !!! | GTGGTTTTGGACCAGGTTGG+AGG | - | chr1_2:45727740-45727759 | Msa0072700:CDS | 55.0% |
| GGCTGTAAAAGAGGTTGGCG+AGG | - | chr1_2:45727778-45727797 | Msa0072700:intron | 55.0% | |
| ! | AATGGTGGTGTGTGTGCGTG+TGG | + | chr1_2:45727942-45727961 | None:intergenic | 55.0% |
| CGCAAGAACCGACTAATCCG+AGG | + | chr1_2:45728591-45728610 | None:intergenic | 55.0% | |
| GCTGTTAACTGTCATGCCGG+AGG | - | chr1_2:45729103-45729122 | Msa0072700:intron | 55.0% | |
| TTGAAACTGCCAGGCTCCTC+CGG | + | chr1_2:45729122-45729141 | None:intergenic | 55.0% | |
| TTCTTCTGACCTGGCAGGTG+GGG | - | chr1_2:45729223-45729242 | Msa0072700:intron | 55.0% | |
| TCAGGTTCCAAGCAGCGAGA+TGG | - | chr1_2:45730213-45730232 | Msa0072700:CDS | 55.0% | |
| GTGAGGTTGTGGCTGTGTGG+TGG | + | chr1_2:45725813-45725832 | None:intergenic | 60.0% | |
| GAGGTGAGGTTGTGGCTGTG+TGG | + | chr1_2:45725816-45725835 | None:intergenic | 60.0% | |
| TGGTTACGGAGGAGGAGGTG+AGG | + | chr1_2:45725830-45725849 | None:intergenic | 60.0% | |
| TGTGACGGTGGTTACGGAGG+AGG | + | chr1_2:45725838-45725857 | None:intergenic | 60.0% | |
| GGCGAAACCTTCAACCTCGG+AGG | + | chr1_2:45725986-45726005 | None:intergenic | 60.0% | |
| ACCGCTCCAACGTAACCAGG+TGG | + | chr1_2:45726025-45726044 | None:intergenic | 60.0% | |
| GGAACCGCTCCAACGTAACC+AGG | + | chr1_2:45726028-45726047 | None:intergenic | 60.0% | |
| ACGTTGGAGCGGTTCCTGAC+AGG | - | chr1_2:45726032-45726051 | Msa0072700:intron | 60.0% | |
| GTTCCTGACAGGACACGTGG+TGG | - | chr1_2:45726043-45726062 | Msa0072700:intron | 60.0% | |
| TCACCACCACGTGTCCTGTC+AGG | + | chr1_2:45726049-45726068 | None:intergenic | 60.0% | |
| TTTGTGCCTGTGGGAGGTGG+TGG | - | chr1_2:45727495-45727514 | Msa0072700:intron | 60.0% | |
| ATGAGACCACCACCTCCCAC+AGG | + | chr1_2:45727504-45727523 | None:intergenic | 60.0% | |
| ! | GGAGGTGGTGGTCTCATTGC+TGG | - | chr1_2:45727507-45727526 | Msa0072700:intron | 60.0% |
| !! | AAGCGGGTTGGAGAGAGAGC+TGG | - | chr1_2:45728369-45728388 | Msa0072700:CDS | 60.0% |
| !! | AGCGGGTTGGAGAGAGAGCT+GGG | - | chr1_2:45728370-45728389 | Msa0072700:CDS | 60.0% |
| GTTGGAGAGAGAGCTGGGAG+TGG | - | chr1_2:45728375-45728394 | Msa0072700:CDS | 60.0% | |
| GAGAGAGAGCTGGGAGTGGT+AGG | - | chr1_2:45728379-45728398 | Msa0072700:CDS | 60.0% | |
| CCACCGAAATCAGCACCGTG+GGG | + | chr1_2:45728501-45728520 | None:intergenic | 60.0% | |
| CCCACCGAAATCAGCACCGT+GGG | + | chr1_2:45728502-45728521 | None:intergenic | 60.0% | |
| !! | CCCACGGTGCTGATTTCGGT+GGG | - | chr1_2:45728499-45728518 | Msa0072700:intron | 60.0% |
| ACCCACCGAAATCAGCACCG+TGG | + | chr1_2:45728503-45728522 | None:intergenic | 60.0% | |
| ATTCATCTGCCCCACCTGCC+AGG | + | chr1_2:45729235-45729254 | None:intergenic | 60.0% | |
| TGCTTCGGACAGGGTGAAGC+TGG | - | chr1_2:45730169-45730188 | Msa0072700:CDS | 60.0% | |
| GGTTCCAAGCAGCGAGATGG+AGG | - | chr1_2:45730216-45730235 | Msa0072700:CDS | 60.0% | |
| AACGATCGTGCCACCGGACT+TGG | - | chr1_2:45730244-45730263 | Msa0072700:CDS | 60.0% | |
| ACGATCGTGCCACCGGACTT+GGG | - | chr1_2:45730245-45730264 | Msa0072700:CDS | 60.0% | |
| CGGAGGAGGAGGTGAGGTTG+TGG | + | chr1_2:45725824-45725843 | None:intergenic | 65.0% | |
| GACGGTGGTTACGGAGGAGG+AGG | + | chr1_2:45725835-45725854 | None:intergenic | 65.0% | |
| CTTTGATACTGCGGCGGCGG+TGG | + | chr1_2:45725915-45725934 | None:intergenic | 65.0% | |
| GCGGTTCCTGACAGGACACG+TGG | - | chr1_2:45726040-45726059 | Msa0072700:intron | 65.0% | |
| !! | GGAGAGGTGGGGTGCTACTG+TGG | - | chr1_2:45727305-45727324 | Msa0072700:intron | 65.0% |
| GGGTCAGGGAACTGTCGGGA+TGG | - | chr1_2:45727434-45727453 | Msa0072700:intron | 65.0% | |
| !! | CCCCACGGTGCTGATTTCGG+TGG | - | chr1_2:45728498-45728517 | Msa0072700:intron | 65.0% |
| ACCAACCCTCGCAAGGTGGC+CGG | - | chr1_2:45728553-45728572 | Msa0072700:intron | 65.0% | |
| TCCGAGGGGTCCAATCCCAC+CGG | + | chr1_2:45728575-45728594 | None:intergenic | 65.0% | |
| !! | GCAAGAGCAAGAGCGCCTGC+TGG | + | chr1_2:45728945-45728964 | None:intergenic | 65.0% |
| GCAGGCGCTCTTGCTCTTGC+TGG | - | chr1_2:45728945-45728964 | Msa0072700:CDS | 65.0% | |
| ACTGTCATGCCGGAGGAGCC+TGG | - | chr1_2:45729110-45729129 | Msa0072700:intron | 65.0% | |
| GGCGGCTCCTCCGAGGTTGA+AGG | - | chr1_2:45725976-45725995 | Msa0072700:three_prime_UTR | 70.0% | |
| ACCGGCCACCTTGCGAGGGT+TGG | + | chr1_2:45728557-45728576 | None:intergenic | 70.0% | |
| AACCCTCGCAAGGTGGCCGG+TGG | - | chr1_2:45728556-45728575 | Msa0072700:intron | 70.0% | |
| ACCCTCGCAAGGTGGCCGGT+GGG | - | chr1_2:45728557-45728576 | Msa0072700:intron | 70.0% | |
| TCCCACCGGCCACCTTGCGA+GGG | + | chr1_2:45728561-45728580 | None:intergenic | 70.0% | |
| ATCCCACCGGCCACCTTGCG+AGG | + | chr1_2:45728562-45728581 | None:intergenic | 70.0% | |
| CGCAAGGTGGCCGGTGGGAT+TGG | - | chr1_2:45728562-45728581 | Msa0072700:intron | 70.0% | |
| GCCGGTGGGATTGGACCCCT+CGG | - | chr1_2:45728571-45728590 | Msa0072700:intron | 70.0% | |
| AACCTCGGAGGAGCCGCCGC+CGG | + | chr1_2:45725974-45725993 | None:intergenic | 75.0% | |
| ! | CTCCGGCGGCGGCTCCTCCG+AGG | - | chr1_2:45725969-45725988 | Msa0072700:three_prime_UTR | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45725702 | 45732255 | 45725702 | ID=Msa0072700;Name=Msa0072700 |
| chr1_2 | mRNA | 45725702 | 45732255 | 45725702 | ID=Msa0072700-mRNA-1;Parent=Msa0072700;Name=Msa0072700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|1|1|1|0.88|0.8|10|360|578 |
| chr1_2 | exon | 45725702 | 45726022 | 45725702 | ID=Msa0072700-mRNA-1:exon:13884;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45727597 | 45727776 | 45727597 | ID=Msa0072700-mRNA-1:exon:13883;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45727891 | 45728025 | 45727891 | ID=Msa0072700-mRNA-1:exon:13882;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45728316 | 45728433 | 45728316 | ID=Msa0072700-mRNA-1:exon:13881;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45728647 | 45728717 | 45728647 | ID=Msa0072700-mRNA-1:exon:13880;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45728800 | 45729048 | 45728800 | ID=Msa0072700-mRNA-1:exon:13879;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45730080 | 45730286 | 45730080 | ID=Msa0072700-mRNA-1:exon:13878;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45730394 | 45730663 | 45730394 | ID=Msa0072700-mRNA-1:exon:13877;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45730944 | 45731123 | 45730944 | ID=Msa0072700-mRNA-1:exon:13876;Parent=Msa0072700-mRNA-1 |
| chr1_2 | exon | 45731732 | 45732255 | 45731732 | ID=Msa0072700-mRNA-1:exon:13875;Parent=Msa0072700-mRNA-1 |
| chr1_2 | five_prime_UTR | 45732098 | 45732255 | 45732098 | ID=Msa0072700-mRNA-1:five_prime_utr;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45731732 | 45732097 | 45731732 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45730944 | 45731123 | 45730944 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45730394 | 45730663 | 45730394 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45730080 | 45730286 | 45730080 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45728800 | 45729048 | 45728800 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45728647 | 45728717 | 45728647 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45728316 | 45728433 | 45728316 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45727891 | 45728025 | 45727891 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | CDS | 45727636 | 45727776 | 45727636 | ID=Msa0072700-mRNA-1:cds;Parent=Msa0072700-mRNA-1 |
| chr1_2 | three_prime_UTR | 45727597 | 45727635 | 45727597 | ID=Msa0072700-mRNA-1:three_prime_utr;Parent=Msa0072700-mRNA-1 |
| chr1_2 | three_prime_UTR | 45725702 | 45726022 | 45725702 | ID=Msa0072700-mRNA-1:three_prime_utr;Parent=Msa0072700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
