AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0025860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025860 MtrunA17_Chr1g0180791 99.630 810 3 0 1 810 1 810 0.0 1654
Msa0025860 MtrunA17_Chr7g0264521 95.443 812 32 4 1 810 1 809 0.0 1568
Msa0025860 MtrunA17_Chr2g0327121 89.642 811 77 3 3 810 2 808 0.0 1498
Msa0025860 MtrunA17_Chr2g0327231 94.118 272 13 1 367 638 238 506 9.23e-179 523
Msa0025860 MtrunA17_Chr2g0327231 79.478 268 50 2 65 331 13 276 1.63e-143 432
Msa0025860 MtrunA17_Chr2g0327231 45.625 160 84 1 205 361 346 505 1.30e-41 159
Msa0025860 MtrunA17_Chr2g0327231 44.444 90 46 1 480 569 155 240 4.16e-18 88.6
Msa0025860 MtrunA17_Chr2g0277831 43.986 582 289 8 207 768 245 809 3.56e-154 470
Msa0025860 MtrunA17_Chr2g0277831 38.321 274 163 2 195 466 523 792 4.62e-49 186
Msa0025860 MtrunA17_Chr7g0255721 43.148 540 272 9 201 711 384 917 1.30e-141 442
Msa0025860 MtrunA17_Chr7g0255721 41.667 276 144 2 196 469 676 936 2.38e-60 221
Msa0025860 MtrunA17_Chr7g0255721 33.916 286 177 5 434 713 338 617 6.86e-37 149
Msa0025860 MtrunA17_Chr7g0255691 43.444 511 271 6 208 711 20 519 8.24e-135 412
Msa0025860 MtrunA17_Chr7g0255691 38.828 273 149 2 204 473 285 542 7.46e-52 190
Msa0025860 MtrunA17_Chr7g0255641 45.745 470 242 6 244 711 432 890 3.39e-134 422
Msa0025860 MtrunA17_Chr7g0255641 41.007 278 147 2 191 466 644 906 1.09e-59 219
Msa0025860 MtrunA17_Chr3g0086401 39.073 604 301 12 208 768 96 675 5.69e-127 395
Msa0025860 MtrunA17_Chr7g0255651 39.773 528 294 7 190 710 4 514 1.94e-121 378
Msa0025860 MtrunA17_Chr3g0086411 42.637 455 217 8 294 707 8 459 2.50e-108 341
Msa0025860 MtrunA17_Chr3g0086411 35.052 291 163 3 194 466 204 486 2.92e-45 170
Msa0025860 MtrunA17_Chr3g0086411 33.654 208 109 6 566 753 7 205 1.35e-20 96.3
Msa0025860 MtrunA17_Chr6g0459841 68.571 210 64 2 2 210 3 211 3.60e-89 298
Msa0025860 MtrunA17_Chr7g0255901 35.614 570 297 20 244 761 362 913 5.58e-86 293
Msa0025860 MtrunA17_Chr7g0255901 41.544 272 150 7 201 466 635 903 9.70e-49 186
Msa0025860 MtrunA17_Chr4g0043381 32.584 623 353 19 191 778 530 1120 1.18e-77 272
Msa0025860 MtrunA17_Chr6g0460061 74.375 160 40 1 51 210 1 159 7.27e-73 252
Msa0025860 MtrunA17_Chr4g0033451 37.221 403 230 9 203 584 378 778 1.23e-65 238
Msa0025860 MtrunA17_Chr4g0033451 37.395 238 134 5 477 705 379 610 9.33e-40 159
Msa0025860 MtrunA17_Chr3g0145011 46.522 230 119 2 477 704 138 365 6.25e-62 214
Msa0025860 MtrunA17_Chr3g0145011 44.304 237 129 2 205 438 139 375 1.13e-58 205
Msa0025860 MtrunA17_Chr3g0141901 45.652 230 121 2 477 704 135 362 3.29e-61 212
Msa0025860 MtrunA17_Chr3g0141901 43.882 237 130 2 205 438 136 372 5.01e-58 203
Msa0025860 MtrunA17_Chr4g0050561 35.905 337 202 7 379 705 52 384 3.77e-61 212
Msa0025860 MtrunA17_Chr4g0050561 44.915 236 126 2 207 438 158 393 5.05e-61 212
Msa0025860 MtrunA17_Chr8g0345461 43.154 241 137 0 464 704 151 391 7.92e-61 212
Msa0025860 MtrunA17_Chr8g0345461 39.689 257 149 4 204 457 164 417 7.09e-58 204
Msa0025860 MtrunA17_Chr7g0262801 47.137 227 117 1 207 430 189 415 3.88e-60 210
Msa0025860 MtrunA17_Chr7g0262801 41.453 234 137 0 472 705 181 414 5.32e-54 193
Msa0025860 MtrunA17_Chr1g0182711 46.696 227 118 1 207 430 190 416 4.97e-60 210
Msa0025860 MtrunA17_Chr1g0182711 41.453 234 137 0 472 705 182 415 2.30e-54 194
Msa0025860 MtrunA17_Chr7g0217421 43.154 241 134 2 476 714 35 274 5.05e-59 206
Msa0025860 MtrunA17_Chr7g0217421 44.033 243 130 4 205 442 39 280 4.32e-56 198
Msa0025860 MtrunA17_Chr1g0200081 43.154 241 136 1 464 704 161 400 1.20e-58 206
Msa0025860 MtrunA17_Chr1g0200081 39.300 257 149 5 204 457 174 426 1.59e-55 197
Msa0025860 MtrunA17_Chr1g0192151 41.702 235 137 0 472 706 161 395 2.30e-58 205
Msa0025860 MtrunA17_Chr1g0192151 41.702 235 134 2 207 438 169 403 3.91e-57 201
Msa0025860 MtrunA17_Chr4g0014731 41.702 235 137 0 472 706 162 396 2.68e-58 204
Msa0025860 MtrunA17_Chr4g0014731 35.974 303 178 4 152 438 102 404 5.20e-57 201
Msa0025860 MtrunA17_Chr4g0004121 38.816 304 163 7 469 763 233 522 3.01e-55 199
Msa0025860 MtrunA17_Chr4g0004121 42.373 236 124 4 205 431 242 474 4.62e-47 176
Msa0025860 MtrunA17_Chr4g0052411 46.696 227 117 3 205 428 229 454 1.14e-53 198
Msa0025860 MtrunA17_Chr4g0052411 41.991 231 131 2 476 704 225 454 1.92e-52 194
Msa0025860 MtrunA17_Chr2g0316851 44.105 229 122 2 206 428 595 823 1.36e-53 202
Msa0025860 MtrunA17_Chr2g0316851 36.596 235 138 4 480 707 596 826 8.06e-43 169
Msa0025860 MtrunA17_Chr3g0143721 40.329 243 141 3 474 714 243 483 2.75e-53 197
Msa0025860 MtrunA17_Chr3g0143721 43.802 242 131 4 205 443 249 488 1.12e-52 195
Msa0025860 MtrunA17_Chr3g0108321 42.308 234 125 3 440 665 115 346 2.99e-52 186
Msa0025860 MtrunA17_Chr3g0108321 49.153 177 87 1 204 377 158 334 7.64e-48 174
Msa0025860 MtrunA17_Chr2g0297281 45.815 227 119 3 205 428 286 511 4.06e-52 194
Msa0025860 MtrunA17_Chr2g0297281 41.991 231 131 2 476 704 282 511 1.46e-51 192
Msa0025860 MtrunA17_Chr6g0456351 43.220 236 131 2 205 438 317 551 2.85e-51 189
Msa0025860 MtrunA17_Chr6g0456351 38.211 246 138 4 480 715 319 560 7.09e-46 174
Msa0025860 MtrunA17_Chr4g0052271 39.167 240 141 4 466 704 107 342 5.17e-51 184
Msa0025860 MtrunA17_Chr4g0052271 34.457 267 168 5 205 467 119 382 9.38e-40 152
Msa0025860 MtrunA17_Chr3g0104211 43.802 242 129 4 200 435 299 539 1.20e-50 191
Msa0025860 MtrunA17_Chr3g0104211 33.607 366 214 9 387 740 228 576 3.64e-48 183
Msa0025860 MtrunA17_Chr2g0331161 39.544 263 148 3 186 438 389 650 2.59e-50 190
Msa0025860 MtrunA17_Chr2g0331161 40.870 230 135 1 477 706 414 642 6.34e-50 189
Msa0025860 MtrunA17_Chr5g0429571 43.028 251 130 5 203 441 311 560 7.22e-50 188
Msa0025860 MtrunA17_Chr5g0429571 37.091 275 161 5 477 740 312 585 9.18e-49 185
Msa0025860 MtrunA17_Chr8g0388371 40.476 252 134 5 205 442 404 653 9.96e-50 189
Msa0025860 MtrunA17_Chr8g0388371 40.598 234 130 3 480 705 406 638 7.83e-46 177
Msa0025860 MtrunA17_Chr7g0248361 42.982 228 126 3 480 704 194 420 4.54e-49 184
Msa0025860 MtrunA17_Chr7g0248361 40.773 233 129 4 203 428 190 420 1.63e-45 173
Msa0025860 MtrunA17_Chr1g0158881 40.486 247 141 3 464 709 314 555 5.85e-49 185
Msa0025860 MtrunA17_Chr1g0158881 42.601 223 126 2 207 429 331 551 3.49e-44 171
Msa0025860 MtrunA17_Chr2g0321241 42.478 226 122 6 472 695 126 345 2.39e-48 177
Msa0025860 MtrunA17_Chr2g0321241 37.607 234 138 6 205 434 132 361 1.22e-41 158
Msa0025860 MtrunA17_Chr4g0026631 42.035 226 123 6 472 695 121 340 2.54e-48 177
Msa0025860 MtrunA17_Chr4g0026631 38.034 234 137 6 205 434 127 356 5.92e-43 162
Msa0025860 MtrunA17_Chr7g0260601 42.000 250 135 5 187 428 221 468 4.77e-48 182
Msa0025860 MtrunA17_Chr7g0260601 42.105 228 128 3 480 704 242 468 9.05e-48 181
Msa0025860 MtrunA17_Chr6g0476861 41.667 228 129 3 480 704 199 425 8.41e-48 181
Msa0025860 MtrunA17_Chr6g0476861 41.564 243 135 4 192 428 184 425 2.02e-46 177
Msa0025860 MtrunA17_Chr5g0432631 42.672 232 132 1 207 438 231 461 8.96e-48 182
Msa0025860 MtrunA17_Chr5g0432631 37.959 245 144 3 477 717 228 468 4.25e-42 165
Msa0025860 MtrunA17_Chr5g0397121 34.733 262 165 4 478 737 513 770 1.77e-47 181
Msa0025860 MtrunA17_Chr5g0397121 41.667 228 128 3 205 429 513 738 4.96e-47 180
Msa0025860 MtrunA17_Chr4g0031821 42.795 229 125 4 480 704 322 548 2.60e-47 181
Msa0025860 MtrunA17_Chr4g0031821 42.149 242 131 4 194 428 309 548 6.13e-47 179
Msa0025860 MtrunA17_Chr8g0387641 39.916 238 138 3 204 438 520 755 3.18e-47 181
Msa0025860 MtrunA17_Chr8g0387641 34.201 269 163 6 477 735 520 784 6.42e-46 177
Msa0025860 MtrunA17_Chr8g0362771 42.553 235 133 2 205 438 237 470 3.83e-47 179
Msa0025860 MtrunA17_Chr8g0362771 38.525 244 145 3 456 699 217 455 1.02e-46 178
Msa0025860 MtrunA17_Chr1g0195741 37.037 297 169 8 479 769 939 1223 5.60e-47 181
Msa0025860 MtrunA17_Chr1g0195741 43.103 232 126 4 205 432 938 1167 7.28e-45 175
Msa0025860 MtrunA17_Chr1g0195731 37.417 302 172 8 479 774 935 1225 8.19e-47 181
Msa0025860 MtrunA17_Chr1g0195731 43.103 232 126 4 205 432 934 1163 1.38e-45 177
Msa0025860 MtrunA17_Chr3g0135721 42.241 232 133 1 207 438 226 456 8.63e-47 178
Msa0025860 MtrunA17_Chr3g0135721 39.035 228 125 3 477 699 223 441 1.85e-44 171
Msa0025860 MtrunA17_Chr3g0094871 39.407 236 137 3 480 710 13 247 2.57e-46 171
Msa0025860 MtrunA17_Chr3g0094871 34.177 316 164 7 205 514 11 288 9.04e-42 158
Msa0025860 MtrunA17_Chr4g0038101 39.916 238 136 4 480 714 723 956 7.81e-46 177
Msa0025860 MtrunA17_Chr4g0038101 39.655 232 134 4 205 432 721 950 2.10e-43 170
Msa0025860 MtrunA17_Chr3g0135761 42.174 230 132 1 209 438 226 454 1.47e-45 174
Msa0025860 MtrunA17_Chr3g0135761 38.158 228 127 3 477 699 221 439 6.19e-43 166
Msa0025860 MtrunA17_Chr1g0202371 42.174 230 127 4 205 431 397 623 2.69e-45 174
Msa0025860 MtrunA17_Chr1g0202371 37.607 234 137 5 479 709 398 625 2.39e-42 165
Msa0025860 MtrunA17_Chr6g0462581 42.105 228 126 4 205 429 500 724 2.86e-45 174
Msa0025860 MtrunA17_Chr6g0462581 33.770 305 189 6 478 774 500 799 5.05e-45 174
Msa0025860 MtrunA17_Chr3g0127401 40.000 235 131 5 200 429 77 306 3.45e-45 167
Msa0025860 MtrunA17_Chr3g0127401 37.447 235 133 5 477 705 80 306 5.66e-43 160
Msa0025860 MtrunA17_Chr7g0246111 42.489 233 128 4 200 429 207 436 4.38e-45 169
Msa0025860 MtrunA17_Chr7g0246111 37.768 233 136 5 476 705 210 436 1.90e-42 162
Msa0025860 MtrunA17_Chr3g0127431 33.451 284 177 6 480 758 86 362 1.36e-44 166
Msa0025860 MtrunA17_Chr3g0127431 37.917 240 139 5 198 432 78 312 2.88e-44 165
Msa0025860 MtrunA17_Chr4g0047411 29.913 458 286 14 196 634 169 610 4.10e-44 170
Msa0025860 MtrunA17_Chr4g0047411 39.738 229 119 5 504 714 202 429 2.96e-40 158
Msa0025860 MtrunA17_Chr6g0459541 32.432 333 176 9 470 775 34 344 6.11e-44 162
Msa0025860 MtrunA17_Chr6g0459541 33.221 298 152 10 205 467 42 327 2.93e-35 137
Msa0025860 MtrunA17_Chr1g0204031 41.558 231 126 6 204 429 556 782 7.35e-44 171
Msa0025860 MtrunA17_Chr1g0204031 38.261 230 134 5 479 705 558 782 9.22e-42 164
Msa0025860 MtrunA17_Chr1g0202381 38.298 235 137 5 478 709 468 697 1.11e-43 169
Msa0025860 MtrunA17_Chr1g0202381 40.870 230 129 5 204 429 467 693 6.63e-43 167
Msa0025860 MtrunA17_Chr3g0116131 42.601 223 122 4 205 423 902 1122 2.18e-43 170
Msa0025860 MtrunA17_Chr3g0116131 40.807 223 125 4 479 698 903 1121 3.08e-43 169
Msa0025860 MtrunA17_Chr5g0432641 41.810 232 131 2 209 437 195 425 4.59e-43 166
Msa0025860 MtrunA17_Chr5g0432641 37.004 227 139 2 482 708 195 417 3.73e-40 157
Msa0025860 MtrunA17_Chr6g0459561 34.653 303 172 7 476 775 380 659 7.46e-43 166
Msa0025860 MtrunA17_Chr6g0459561 36.934 287 155 11 192 466 369 641 2.08e-38 152
Msa0025860 MtrunA17_Chr3g0129971 39.759 249 137 6 205 443 296 541 7.79e-43 167
Msa0025860 MtrunA17_Chr3g0129971 41.350 237 132 5 478 708 296 531 4.75e-41 162
Msa0025860 MtrunA17_Chr6g0459551 31.915 329 168 10 476 772 100 404 2.13e-35 139
Msa0025860 MtrunA17_Chr6g0459551 31.438 299 157 9 192 449 89 380 6.34e-33 132
Msa0025860 MtrunA17_Chr3g0135781 38.919 185 107 3 456 640 35 213 3.02e-33 127
Msa0025860 MtrunA17_Chr3g0135781 44.025 159 88 1 205 363 55 212 2.67e-32 124
Msa0025860 MtrunA17_Chr8g0357301 36.017 236 136 5 228 451 492 724 1.26e-32 136
Msa0025860 MtrunA17_Chr8g0357301 33.913 230 134 4 484 704 479 699 1.41e-28 123
Msa0025860 MtrunA17_Chr2g0289231 35.808 229 131 5 204 422 296 518 8.51e-32 131
Msa0025860 MtrunA17_Chr2g0289231 32.129 249 146 7 479 713 298 537 2.52e-28 120
Msa0025860 MtrunA17_Chr6g0459531 29.773 309 164 9 470 775 59 317 5.75e-30 121
Msa0025860 MtrunA17_Chr6g0459531 29.630 270 148 8 192 449 54 293 2.25e-25 107
Msa0025860 MtrunA17_Chr1g0190401 33.023 215 139 3 473 683 672 885 3.35e-28 122
Msa0025860 MtrunA17_Chr1g0190401 29.524 315 190 9 219 524 691 982 2.62e-24 109
Msa0025860 MtrunA17_Chr1g0168321 42.236 161 88 3 548 704 196 355 1.03e-27 118
Msa0025860 MtrunA17_Chr1g0168321 33.047 233 110 5 203 428 162 355 9.84e-27 115
Msa0025860 MtrunA17_Chr2g0315971 24.030 541 331 20 135 649 154 640 9.96e-26 113
Msa0025860 MtrunA17_Chr5g0432391 38.854 157 96 0 282 438 80 236 2.41e-25 109
Msa0025860 MtrunA17_Chr5g0432391 30.653 199 128 3 546 740 74 266 3.07e-24 106
Msa0025860 MtrunA17_Chr4g0062081 52.564 78 36 1 209 285 11 88 1.66e-21 90.1
Msa0025860 MtrunA17_Chr4g0062081 46.154 78 41 1 482 558 11 88 7.75e-18 79.3
Msa0025860 MtrunA17_Chr2g0327221 87.234 47 6 0 724 770 1 47 4.15e-20 84.3
Msa0025860 MtrunA17_Chr5g0404291 29.858 211 115 8 509 694 382 584 5.70e-16 82.0
Msa0025860 MtrunA17_Chr5g0404291 30.049 203 112 7 241 418 387 584 6.59e-13 72.4
Msa0025860 MtrunA17_Chr3g0116941 29.268 205 125 6 480 667 160 361 2.96e-15 79.3
Msa0025860 MtrunA17_Chr6g0450161 28.774 212 119 8 509 695 357 561 5.12e-15 79.0
Msa0025860 MtrunA17_Chr6g0450161 30.872 149 98 4 241 388 362 506 2.52e-13 73.6
Msa0025860 MtrunA17_Chr4g0039781 31.288 163 104 5 506 667 360 515 4.16e-14 76.3
Msa0025860 MtrunA17_Chr4g0039781 30.667 150 97 6 241 388 368 512 4.48e-12 69.7
Msa0025860 MtrunA17_Chr3g0086421 42.529 87 45 2 207 290 236 320 2.43e-13 72.0
Msa0025860 MtrunA17_Chr3g0086421 38.372 86 50 2 480 563 236 320 9.83e-11 64.3
Msa0025860 MtrunA17_Chr8g0372701 29.940 167 104 5 488 649 232 390 5.85e-12 68.9
Msa0025860 MtrunA17_Chr2g0315921 28.916 249 137 13 135 374 159 376 1.45e-11 67.4
Msa0025860 MtrunA17_Chr2g0315911 27.976 168 108 5 487 649 213 372 3.43e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0025860 AT5G03340.1 93.508 801 47 3 1 798 1 799 0.0 1540
Msa0025860 AT3G53230.1 90.709 818 65 3 1 810 1 815 0.0 1508
Msa0025860 AT3G09840.1 92.232 811 60 3 1 810 1 809 0.0 1505
Msa0025860 AT3G01610.1 42.159 593 305 7 207 776 232 809 2.56e-147 453
Msa0025860 AT3G01610.1 36.054 294 160 4 479 753 231 515 5.02e-48 183
Msa0025860 AT3G01610.1 37.634 279 168 4 194 470 514 788 3.22e-42 166
Msa0025860 AT3G01610.2 42.159 593 305 7 207 776 232 809 2.99e-147 453
Msa0025860 AT3G01610.2 36.054 294 160 4 479 753 231 515 5.08e-48 183
Msa0025860 AT3G01610.2 37.634 279 168 4 194 470 514 788 3.53e-42 166
Msa0025860 AT2G03670.1 42.604 507 267 5 209 707 23 513 3.32e-136 417
Msa0025860 AT2G03670.1 40.210 286 152 2 191 472 269 539 2.29e-54 199
Msa0025860 AT2G03670.2 43.095 420 215 5 209 620 23 426 1.69e-108 339
Msa0025860 AT2G03670.2 36.000 225 131 4 482 698 23 242 1.99e-35 140
Msa0025860 AT2G03670.2 40.260 154 88 1 191 340 269 422 3.91e-25 109
Msa0025860 AT1G03000.1 33.972 574 315 17 244 768 379 937 1.31e-87 298
Msa0025860 AT1G03000.1 42.066 271 151 5 201 466 651 920 1.30e-52 198
Msa0025860 AT3G56690.1 46.970 264 139 1 447 710 690 952 6.76e-78 272
Msa0025860 AT3G56690.1 45.902 244 130 1 204 445 720 963 1.70e-60 222
Msa0025860 AT3G56690.1 45.536 224 120 2 210 432 387 609 4.79e-58 215
Msa0025860 AT3G56690.1 40.887 203 112 3 510 709 413 610 5.17e-39 156
Msa0025860 AT5G08470.3 34.630 514 287 12 234 722 576 1065 1.54e-73 261
Msa0025860 AT5G08470.3 42.544 228 131 0 205 432 832 1059 1.56e-49 189
Msa0025860 AT5G08470.1 34.630 514 287 12 234 722 585 1074 1.85e-73 261
Msa0025860 AT5G08470.1 42.544 228 131 0 205 432 841 1068 1.53e-49 189
Msa0025860 AT1G05910.1 44.643 280 144 5 203 474 376 652 1.36e-64 235
Msa0025860 AT1G05910.1 33.808 281 155 7 477 745 377 638 3.20e-39 157
Msa0025860 AT1G45000.1 46.522 230 119 2 477 704 135 362 2.93e-62 215
Msa0025860 AT1G45000.1 44.304 237 129 2 205 438 136 372 5.55e-58 203
Msa0025860 AT5G19990.2 36.446 332 198 7 382 705 2 328 3.90e-62 214
Msa0025860 AT5G19990.2 44.915 236 126 2 207 438 102 337 6.89e-62 213
Msa0025860 AT5G20000.1 36.499 337 200 7 379 705 54 386 8.10e-62 214
Msa0025860 AT5G20000.1 44.915 236 126 2 207 438 160 395 1.95e-61 213
Msa0025860 AT2G20140.1 48.018 227 115 1 207 430 187 413 9.25e-62 215
Msa0025860 AT2G20140.1 42.308 234 135 0 472 705 179 412 1.83e-55 197
Msa0025860 AT5G43010.1 46.087 230 120 2 477 704 135 362 9.97e-62 214
Msa0025860 AT5G43010.1 43.882 237 130 2 205 438 136 372 9.54e-58 203
Msa0025860 AT5G19990.1 35.988 339 203 7 377 705 52 386 1.41e-61 214
Msa0025860 AT5G19990.1 44.915 236 126 2 207 438 160 395 1.80e-61 214
Msa0025860 AT5G19990.3 35.988 339 203 7 377 705 52 386 1.41e-61 214
Msa0025860 AT5G19990.3 44.915 236 126 2 207 438 160 395 1.80e-61 214
Msa0025860 AT4G29040.1 47.577 227 116 2 207 430 187 413 1.31e-60 212
Msa0025860 AT4G29040.1 41.880 234 136 0 472 705 179 412 8.56e-55 196
Msa0025860 AT1G53750.1 43.154 241 137 0 464 704 151 391 1.37e-60 211
Msa0025860 AT1G53750.1 39.382 259 151 4 204 459 164 419 1.05e-57 203
Msa0025860 AT5G58290.1 39.792 289 160 4 440 716 108 394 7.85e-60 209
Msa0025860 AT5G58290.1 44.444 234 127 1 204 434 151 384 4.35e-58 204
Msa0025860 AT3G05530.1 42.553 235 135 0 472 706 162 396 4.15e-59 207
Msa0025860 AT3G05530.1 42.553 235 132 2 207 438 170 404 1.20e-57 203
Msa0025860 AT1G09100.1 42.128 235 136 0 472 706 161 395 5.03e-58 204
Msa0025860 AT1G09100.1 41.702 235 134 2 207 438 169 403 5.44e-56 199
Msa0025860 AT1G53780.1 43.333 240 136 0 464 703 323 562 1.21e-57 208
Msa0025860 AT1G53780.1 43.111 225 123 2 207 427 339 562 1.66e-54 199
Msa0025860 AT1G53780.4 43.333 240 136 0 464 703 323 562 1.21e-57 208
Msa0025860 AT1G53780.4 43.111 225 123 2 207 427 339 562 1.66e-54 199
Msa0025860 AT1G53780.3 43.333 240 136 0 464 703 322 561 1.21e-57 207
Msa0025860 AT1G53780.3 43.111 225 123 2 207 427 338 561 1.73e-54 199
Msa0025860 AT1G53780.2 43.333 240 136 0 464 703 344 583 1.42e-57 208
Msa0025860 AT1G53780.2 43.111 225 123 2 207 427 360 583 2.27e-54 199
Msa0025860 AT1G80350.1 38.944 303 164 6 469 763 227 516 1.09e-56 203
Msa0025860 AT1G80350.1 40.486 247 135 4 194 431 225 468 6.78e-46 172
Msa0025860 AT5G15250.1 41.949 236 134 2 476 709 217 451 5.49e-55 202
Msa0025860 AT5G15250.1 44.444 243 129 4 205 442 221 462 5.99e-53 196
Msa0025860 AT3G15120.1 40.942 276 151 3 206 469 717 992 1.29e-54 206
Msa0025860 AT3G15120.1 38.362 232 130 5 480 703 718 944 3.80e-42 167
Msa0025860 AT3G15120.2 40.942 276 151 3 206 469 727 1002 1.34e-54 206
Msa0025860 AT3G15120.2 38.362 232 130 5 480 703 728 954 3.71e-42 167
Msa0025860 AT5G42270.1 41.152 243 139 3 474 714 241 481 6.97e-54 199
Msa0025860 AT5G42270.1 42.975 242 133 4 205 443 247 486 2.53e-52 194
Msa0025860 AT2G30950.1 44.856 243 128 4 205 442 224 465 2.64e-53 197
Msa0025860 AT2G30950.1 41.991 231 131 2 476 704 220 449 3.16e-52 194
Msa0025860 AT2G30950.2 44.856 243 128 4 205 442 224 465 2.64e-53 197
Msa0025860 AT2G30950.2 41.991 231 131 2 476 704 220 449 3.16e-52 194
Msa0025860 AT2G30950.3 44.856 243 128 4 205 442 224 465 2.64e-53 197
Msa0025860 AT2G30950.3 41.991 231 131 2 476 704 220 449 3.16e-52 194
Msa0025860 AT2G30950.4 44.856 243 128 4 205 442 228 469 2.68e-53 197
Msa0025860 AT2G30950.4 41.991 231 131 2 476 704 224 453 3.32e-52 194
Msa0025860 AT1G50250.1 40.329 243 141 3 474 714 253 493 7.86e-53 196
Msa0025860 AT1G50250.1 42.975 242 133 4 205 443 259 498 5.11e-52 194
Msa0025860 AT1G06430.1 44.033 243 130 4 205 442 217 458 2.00e-52 194
Msa0025860 AT1G06430.1 41.558 231 132 2 476 704 213 442 2.97e-51 191
Msa0025860 AT1G06430.3 44.033 243 130 4 205 442 217 458 2.00e-52 194
Msa0025860 AT1G06430.3 41.558 231 132 2 476 704 213 442 2.97e-51 191
Msa0025860 AT1G06430.2 44.033 243 130 4 205 442 217 458 2.00e-52 194
Msa0025860 AT1G06430.2 41.558 231 132 2 476 704 213 442 2.97e-51 191
Msa0025860 AT2G34560.1 38.272 243 146 3 466 707 88 327 3.22e-52 187
Msa0025860 AT2G34560.1 34.328 268 168 5 205 467 100 364 8.69e-42 157
Msa0025860 AT2G34560.2 38.272 243 146 3 466 707 97 336 4.14e-52 187
Msa0025860 AT2G34560.2 34.328 268 168 5 205 467 109 373 7.84e-42 158
Msa0025860 AT5G15250.2 39.382 259 131 4 476 709 217 474 1.00e-51 189
Msa0025860 AT5G15250.2 40.602 266 129 5 205 442 221 485 1.13e-49 183
Msa0025860 AT3G47060.1 44.048 252 126 5 203 441 320 569 1.24e-51 194
Msa0025860 AT3G47060.1 37.091 275 161 5 477 740 321 594 5.59e-50 189
Msa0025860 AT5G08470.2 33.413 419 238 11 234 627 585 987 5.40e-51 194
Msa0025860 AT5G08470.2 42.484 153 86 1 205 355 841 993 3.96e-29 125
Msa0025860 AT5G58870.1 44.167 240 125 4 203 435 324 561 1.31e-50 191
Msa0025860 AT5G58870.1 38.197 233 140 3 477 706 325 556 1.92e-47 181
Msa0025860 AT3G02450.1 43.220 236 131 2 205 438 331 565 3.69e-50 187
Msa0025860 AT3G02450.1 36.397 272 157 5 462 723 317 582 9.78e-45 171
Msa0025860 AT3G16290.1 40.611 229 135 1 477 705 406 633 6.62e-50 189
Msa0025860 AT3G16290.1 40.161 249 138 3 191 429 386 633 2.35e-48 185
Msa0025860 AT4G23940.1 41.129 248 131 4 205 438 427 673 7.63e-50 190
Msa0025860 AT4G23940.1 40.343 233 130 3 482 706 431 662 2.95e-45 176
Msa0025860 AT5G53170.1 41.126 231 131 2 479 709 360 585 1.62e-49 187
Msa0025860 AT5G53170.1 43.498 223 124 2 207 429 361 581 8.13e-46 177
Msa0025860 AT1G07510.1 43.478 230 124 4 480 705 326 553 2.12e-48 184
Msa0025860 AT1G07510.1 40.078 257 145 5 194 442 313 568 4.80e-47 180
Msa0025860 AT2G45500.4 39.485 233 132 5 476 705 78 304 4.01e-48 174
Msa0025860 AT2G45500.4 40.773 233 132 4 200 429 75 304 4.07e-46 169
Msa0025860 AT2G45500.3 39.485 233 132 5 476 705 78 304 4.01e-48 174
Msa0025860 AT2G45500.3 40.773 233 132 4 200 429 75 304 4.07e-46 169
Msa0025860 AT4G28000.3 40.909 264 144 6 181 439 495 751 1.18e-47 182
Msa0025860 AT4G28000.3 35.563 284 168 7 479 752 518 796 1.26e-44 173
Msa0025860 AT4G28000.1 40.909 264 144 6 181 439 493 749 1.21e-47 182
Msa0025860 AT4G28000.1 35.439 285 169 7 479 753 516 795 1.45e-44 173
Msa0025860 AT4G28000.2 40.909 264 144 6 181 439 495 751 1.43e-47 182
Msa0025860 AT4G28000.2 35.439 285 169 7 479 753 518 797 1.62e-44 173
Msa0025860 AT4G02480.1 41.739 230 127 4 479 705 961 1186 4.14e-47 182
Msa0025860 AT4G02480.1 44.105 229 122 4 205 429 960 1186 8.61e-46 178
Msa0025860 AT2G45500.2 39.485 233 132 5 476 705 211 437 5.78e-47 175
Msa0025860 AT2G45500.2 40.773 233 132 4 200 429 208 437 6.37e-45 169
Msa0025860 AT2G45500.1 39.485 233 132 5 476 705 215 441 6.86e-47 175
Msa0025860 AT2G45500.1 40.773 233 132 4 200 429 212 441 7.99e-45 169
Msa0025860 AT1G02890.1 41.250 240 133 5 479 715 942 1176 7.81e-47 181
Msa0025860 AT1G02890.1 35.484 341 201 10 104 432 837 1170 6.31e-46 178
Msa0025860 AT2G45500.5 39.485 233 132 5 476 705 221 447 8.62e-47 174
Msa0025860 AT2G45500.5 40.773 233 132 4 200 429 218 447 7.78e-45 169
Msa0025860 AT2G27600.1 40.708 226 126 6 472 695 123 342 1.29e-46 172
Msa0025860 AT2G27600.1 36.325 234 141 6 205 434 129 358 3.80e-40 154
Msa0025860 AT4G27680.1 39.076 238 135 5 200 432 77 309 1.63e-46 171
Msa0025860 AT4G27680.1 37.500 248 143 6 483 726 86 325 2.36e-44 165
Msa0025860 AT1G50140.2 41.453 234 130 4 480 710 691 920 1.75e-46 179
Msa0025860 AT1G50140.2 41.921 229 127 4 205 429 689 915 1.01e-44 174
Msa0025860 AT1G50140.5 41.453 234 130 4 480 710 691 920 1.75e-46 179
Msa0025860 AT1G50140.5 41.921 229 127 4 205 429 689 915 1.01e-44 174
Msa0025860 AT1G50140.3 41.453 234 130 4 480 710 713 942 1.99e-46 179
Msa0025860 AT1G50140.3 41.921 229 127 4 205 429 711 937 1.12e-44 174
Msa0025860 AT1G50140.1 41.453 234 130 4 480 710 713 942 1.99e-46 179
Msa0025860 AT1G50140.1 41.921 229 127 4 205 429 711 937 1.12e-44 174
Msa0025860 AT1G50140.4 41.453 234 130 4 480 710 713 942 1.99e-46 179
Msa0025860 AT1G50140.4 41.921 229 127 4 205 429 711 937 1.12e-44 174
Msa0025860 AT2G26140.1 44.545 220 121 1 207 426 226 444 2.37e-46 177
Msa0025860 AT2G26140.1 38.938 226 134 2 477 702 223 444 1.53e-44 172
Msa0025860 AT2G29080.1 42.105 228 129 2 480 705 321 547 2.47e-46 178
Msa0025860 AT2G29080.1 41.152 243 135 4 194 430 308 548 5.85e-46 177
Msa0025860 AT1G64110.5 41.228 228 129 3 205 429 516 741 3.26e-46 178
Msa0025860 AT1G64110.5 34.082 267 166 5 477 737 515 777 6.54e-46 177
Msa0025860 AT1G64110.3 41.228 228 129 3 205 429 516 741 3.26e-46 178
Msa0025860 AT1G64110.3 34.082 267 166 5 477 737 515 777 6.54e-46 177
Msa0025860 AT1G64110.1 41.228 228 129 3 205 429 513 738 3.61e-46 178
Msa0025860 AT1G64110.1 34.082 267 166 5 477 737 512 774 6.31e-46 177
Msa0025860 AT1G64110.2 41.228 228 129 3 205 429 518 743 3.65e-46 178
Msa0025860 AT1G64110.2 34.082 267 166 5 477 737 517 779 7.32e-46 177
Msa0025860 AT1G64110.4 41.228 228 129 3 205 429 518 743 3.65e-46 178
Msa0025860 AT1G64110.4 34.082 267 166 5 477 737 517 779 7.32e-46 177
Msa0025860 AT5G53540.1 37.500 248 143 6 483 726 89 328 2.22e-45 168
Msa0025860 AT5G53540.1 32.298 322 190 7 204 504 83 397 4.16e-44 164
Msa0025860 AT5G52882.1 40.336 238 136 4 205 439 514 748 2.70e-45 175
Msa0025860 AT5G52882.1 37.551 245 142 6 478 716 514 753 1.11e-43 170
Msa0025860 AT4G04910.1 30.361 415 251 12 194 586 204 602 4.17e-45 174
Msa0025860 AT4G04910.1 39.091 220 120 4 504 710 239 457 2.86e-39 156
Msa0025860 AT4G24860.2 41.631 233 130 4 204 432 812 1042 5.48e-44 172
Msa0025860 AT4G24860.2 38.843 242 140 5 477 715 812 1048 2.29e-43 170
Msa0025860 AT4G24860.3 41.631 233 130 4 204 432 814 1044 5.49e-44 172
Msa0025860 AT4G24860.3 38.843 242 140 5 477 715 814 1050 2.53e-43 170
Msa0025860 AT3G19740.1 39.744 234 134 4 480 710 703 932 5.79e-44 172
Msa0025860 AT3G19740.1 41.048 229 129 4 205 429 701 927 1.25e-43 171
Msa0025860 AT4G24860.4 41.631 233 130 4 204 432 789 1019 5.86e-44 172
Msa0025860 AT4G24860.4 38.843 242 140 5 477 715 789 1025 2.35e-43 170
Msa0025860 AT4G24860.1 41.631 233 130 4 204 432 816 1046 5.96e-44 172
Msa0025860 AT4G24860.1 38.843 242 140 5 477 715 816 1052 2.72e-43 170
Msa0025860 AT3G27120.1 34.364 291 171 6 476 763 398 671 6.58e-44 169
Msa0025860 AT3G27120.1 36.299 281 165 8 192 466 387 659 3.56e-38 152
Msa0025860 AT5G64580.1 36.486 296 162 8 205 482 313 600 6.45e-43 168
Msa0025860 AT5G64580.1 37.687 268 155 5 474 730 309 575 4.51e-41 162
Msa0025860 AT1G62130.2 36.170 235 131 5 479 710 744 962 2.32e-36 148
Msa0025860 AT1G62130.2 35.918 245 136 7 205 445 743 970 6.33e-34 140
Msa0025860 AT1G62130.1 36.170 235 131 5 479 710 751 969 2.38e-36 148
Msa0025860 AT1G62130.1 35.918 245 136 7 205 445 750 977 6.44e-34 140
Msa0025860 AT1G02890.2 31.672 341 186 11 104 432 837 1142 2.07e-33 139
Msa0025860 AT1G02890.2 35.417 240 119 6 479 715 942 1148 1.13e-32 137
Msa0025860 AT1G45000.2 43.165 139 79 0 477 615 135 273 2.45e-33 132
Msa0025860 AT1G45000.2 45.652 138 72 2 205 339 136 273 1.91e-31 126
Msa0025860 AT1G79560.1 35.470 234 136 5 230 451 514 744 9.00e-33 137
Msa0025860 AT1G79560.1 30.745 322 191 8 397 705 418 720 4.72e-29 125
Msa0025860 AT1G79560.3 35.470 234 136 5 230 451 514 744 9.02e-33 137
Msa0025860 AT1G79560.3 30.745 322 191 8 397 705 418 720 5.11e-29 125
Msa0025860 AT1G79560.2 35.470 234 136 5 230 451 514 744 1.10e-32 136
Msa0025860 AT1G79560.2 30.745 322 191 8 397 705 418 720 5.71e-29 125
Msa0025860 AT4G04180.2 34.335 233 139 5 199 422 305 532 1.62e-31 131
Msa0025860 AT4G04180.2 33.913 230 133 7 479 698 312 532 5.79e-30 126
Msa0025860 AT4G04180.1 34.335 233 139 5 199 422 310 537 2.03e-31 130
Msa0025860 AT4G04180.1 33.913 230 133 7 479 698 317 537 6.68e-30 126
Msa0025860 AT3G04340.1 34.197 193 125 2 473 664 776 967 2.27e-27 120
Msa0025860 AT3G04340.1 33.163 196 123 4 219 407 795 989 2.44e-21 100
Msa0025860 AT2G18330.1 28.837 215 114 8 513 695 383 590 2.64e-14 77.4
Msa0025860 AT2G18330.1 30.675 163 108 4 241 402 384 542 8.13e-13 72.4
Msa0025860 AT4G36580.1 27.778 216 120 7 509 695 376 584 2.65e-14 77.4
Msa0025860 AT4G36580.1 31.469 143 93 4 241 382 381 519 6.68e-12 69.7
Msa0025860 AT5G17760.1 27.000 200 125 6 460 649 199 387 1.94e-13 74.3
Msa0025860 AT4G24710.3 30.220 182 103 7 507 667 201 379 4.65e-13 72.8
Msa0025860 AT4G24710.1 30.556 180 101 7 507 665 189 365 4.78e-13 72.8
Msa0025860 AT5G16930.1 31.333 150 96 6 241 388 397 541 1.57e-12 71.6
Msa0025860 AT5G16930.1 29.375 160 105 5 509 667 392 544 4.68e-12 70.1
Msa0025860 AT3G03060.1 30.201 149 99 4 241 388 385 529 4.00e-12 70.5
Msa0025860 AT3G03060.1 28.750 160 106 5 509 667 380 532 8.11e-12 69.3
Msa0025860 AT4G24710.4 32.168 143 75 6 507 628 201 342 4.36e-11 65.9
Msa0025860 AT4G24710.2 32.168 143 75 6 507 628 201 342 4.36e-11 65.9
Msa0025860 AT5G17740.1 27.011 174 108 4 487 649 217 382 4.72e-11 66.6
Msa0025860 AT5G17730.1 27.811 169 108 5 487 649 217 377 4.99e-11 66.2

Find 232 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGGGTTCTCTCAACTCTTT+TGG 0.167865 1_1:+49500504 Msa0025860:three_prime_UTR
CCATTAGTCTTCTCCCTCTT+TGG 0.192457 1_1:-49498187 None:intergenic
CCTGAGAAATTTGAGAAGTT+TGG 0.210931 1_1:+49499055 Msa0025860:CDS
CTCTTGACTGCTGCAAAGTT+TGG 0.216514 1_1:-49500161 None:intergenic
CGATTTCAGTACGGCGATTC+TGG 0.227132 1_1:+49496206 Msa0025860:CDS
ACCTTATTCATTCTTATCTT+TGG 0.233235 1_1:-49496544 None:intergenic
ACAATTATTTGGTCAGCTTC+TGG 0.235003 1_1:+49500467 Msa0025860:three_prime_UTR
TGAAGTTTCTCCATGGTTTC+AGG 0.238671 1_1:-49496303 None:intergenic
AAACATTTGAAACAATTATT+TGG 0.249754 1_1:+49500456 Msa0025860:three_prime_UTR
CATTGCTCCGTAAAAGATAT+TGG 0.267563 1_1:+49500408 Msa0025860:three_prime_UTR
GTGAAGGAGAGCCTGTTAAA+AGG 0.279427 1_1:+49497810 Msa0025860:CDS
CAATGTCCTGATGTCAAATA+TGG 0.279869 1_1:+49496616 Msa0025860:CDS
AGGTTGTGAGAAACAATCTT+AGG 0.285333 1_1:+49496563 Msa0025860:CDS
CCAAACTTCTCAAATTTCTC+AGG 0.287062 1_1:-49499055 None:intergenic
AATCAAAAGGTACATAAATT+AGG 0.295583 1_1:-49500344 None:intergenic
ATGCTGGTGGTGCTGCTGAC+AGG 0.307840 1_1:+49499529 Msa0025860:CDS
CATCAATGGTTTCATCTTCT+AGG 0.308644 1_1:-49498634 None:intergenic
GAAGTTTGCTTGACATTCAT+TGG 0.319366 1_1:-49499152 None:intergenic
GATACTATTGAAGGGGTTAC+TGG 0.323515 1_1:+49496667 Msa0025860:CDS
GCCAAAGATAAGAATGAATA+AGG 0.323786 1_1:+49496543 Msa0025860:CDS
AATAAGCTAATATTAGAAAT+AGG 0.328952 1_1:-49500627 None:intergenic
TCAGTGCATCAGAGAGAAAA+TGG 0.329410 1_1:+49498601 Msa0025860:CDS
TTTGATCGGGAGATTGATAT+TGG 0.332722 1_1:+49498343 Msa0025860:CDS
AGGAAGAAGATGAAGAGAAT+TGG 0.335553 1_1:-49496035 None:intergenic
GAATCAACTGCTTACAGAAA+TGG 0.338525 1_1:+49499557 Msa0025860:CDS
GACCCTGCTCTTCGGAGGTT+TGG 0.338552 1_1:+49498316 Msa0025860:CDS
AAGAAAACTGTGTTTATCAT+TGG 0.338719 1_1:+49499594 Msa0025860:CDS
AGATGAAGAGAATTGGGAAT+TGG 0.339271 1_1:-49496028 None:intergenic
AACATATCTCCCTTCCTAAC+TGG 0.340000 1_1:-49497692 None:intergenic
CCACAATTATTCAAGTCTAT+TGG 0.341498 1_1:+49497935 Msa0025860:CDS
AAAGATATTGGTACATCATT+AGG 0.342060 1_1:+49500420 Msa0025860:three_prime_UTR
GATTACGAATCGGAGGATTC+AGG 0.348248 1_1:-49496072 None:intergenic
ATTGTTGAATTTATTCTTCA+AGG 0.348848 1_1:-49500584 None:intergenic
TTGCAGCAGTCAAGAGGGTT+TGG 0.349332 1_1:+49500168 Msa0025860:CDS
TTGCAGAGAGGTAGTAGTTC+AGG 0.356705 1_1:+49499504 Msa0025860:intron
AGAAAACTGTGTTTATCATT+GGG 0.358046 1_1:+49499595 Msa0025860:CDS
GATGGCTCAGATTCGGGAAT+TGG 0.362974 1_1:+49497892 Msa0025860:CDS
CAATTATTTGGTCAGCTTCT+GGG 0.366317 1_1:+49500468 Msa0025860:three_prime_UTR
TTATCCTCTTCCATAGCTTC+AGG 0.367349 1_1:-49500030 None:intergenic
AAGAGCAGGGTCGATGCTAT+TGG 0.367446 1_1:-49498305 None:intergenic
GATGAAGAGAATTGGGAATT+GGG 0.372200 1_1:-49496027 None:intergenic
TCAGCTTCTGGGACCATATA+TGG 0.372203 1_1:+49500479 Msa0025860:three_prime_UTR
CCATACAACAAAATCCCTTT+TGG 0.374010 1_1:-49497968 None:intergenic
CCGTGCGCATGTAATTGTTA+TGG 0.381381 1_1:+49498267 Msa0025860:CDS
ACATTCATTGGCAATAGCTT+TGG 0.385260 1_1:-49499140 None:intergenic
CGCTTTCCATATTTGACATC+AGG 0.387613 1_1:-49496622 None:intergenic
TTCCCAGCTCTTGACCCTCA+TGG 0.390536 1_1:+49498231 Msa0025860:CDS
AATATCTTCCCAGCTGCAAT+TGG 0.390700 1_1:-49498889 None:intergenic
AAAGCAGATGGCTCAGATTC+GGG 0.391221 1_1:+49497886 Msa0025860:CDS
TCTTGACTGCTGCAAAGTTT+GGG 0.392250 1_1:-49500160 None:intergenic
GGAAGAAGATGAAGAGAATT+GGG 0.399256 1_1:-49496034 None:intergenic
ATAAAGAATGTGAGAGGGTT+TGG 0.405113 1_1:-49495982 None:intergenic
CTCTTCATCTTCTTCCTCCA+TGG 0.406022 1_1:+49496041 Msa0025860:exon
CGTGCGCATGTAATTGTTAT+GGG 0.408023 1_1:+49498268 Msa0025860:CDS
CGAGCTGTTGCAAATGAAAC+TGG 0.410371 1_1:+49498022 Msa0025860:CDS
ATTGTTTCAAATGTTTAGAA+AGG 0.414115 1_1:-49500449 None:intergenic
AGAGAACCCGTGACCATATA+TGG 0.414197 1_1:-49500492 None:intergenic
CTACAATACTTACTGTTTCA+CGG 0.414643 1_1:-49498733 None:intergenic
GAAAGCAGATGGCTCAGATT+CGG 0.416171 1_1:+49497885 Msa0025860:CDS
CGTCCAGGTCGTAGTAGAGC+AGG 0.418938 1_1:-49499645 None:intergenic
CCAGCACTTGCAGTTGCAAA+AGG 0.423662 1_1:-49500249 None:intergenic
CAGCTCTTGACCCTCATGGA+TGG 0.429744 1_1:+49498235 Msa0025860:CDS
AATTGCAGCTGGGAAGATAT+TGG 0.431694 1_1:+49498891 Msa0025860:CDS
AGAGCAGGGTCGATGCTATT+GGG 0.432897 1_1:-49498304 None:intergenic
ATGTCAACATCCTTTGCAAT+GGG 0.437399 1_1:-49499747 None:intergenic
CCTGTGGATGATACTATTGA+AGG 0.437543 1_1:+49496658 Msa0025860:CDS
GTTCTGTTCTATGGTCCTCC+TGG 0.444694 1_1:+49499097 Msa0025860:CDS
TTCTATGGTCCTCCTGGTTG+TGG 0.449593 1_1:+49499103 Msa0025860:CDS
AGCTCTTGACCCTCATGGAT+GGG 0.452610 1_1:+49498236 Msa0025860:CDS
CTTCTCCCTCTTTGGAGCAA+TGG 0.454941 1_1:-49498179 None:intergenic
CTTCCAAACCTCCGAAGAGC+AGG 0.457920 1_1:-49498319 None:intergenic
GATGAGAAGTGTGGAATTCA+AGG 0.459086 1_1:+49497730 Msa0025860:CDS
ATTAAAGTCTTACCAGATCC+AGG 0.459464 1_1:-49497995 None:intergenic
GAGCTACTCACAATGTGGTT+TGG 0.459720 1_1:+49499193 Msa0025860:CDS
CTGCTCTTCGGAGGTTTGGA+AGG 0.463909 1_1:+49498320 Msa0025860:CDS
CATCCATGAGGGTCAAGAGC+TGG 0.467092 1_1:-49498234 None:intergenic
GTTTGGAATGTCACCTTCAA+AGG 0.467990 1_1:+49499072 Msa0025860:CDS
ACTGAAGCCTTGAGTGTACT+TGG 0.468487 1_1:-49499781 None:intergenic
GTCGGGAATCCTCGTCTGGA+AGG 0.469180 1_1:-49499692 None:intergenic
TCAAGACGTCCAACTTCATC+TGG 0.469206 1_1:-49498370 None:intergenic
AATTTCTCAGGGTGTTCCAC+TGG 0.471754 1_1:-49499043 None:intergenic
GGAGGTTTGGAAGGTTTGAT+CGG 0.472205 1_1:+49498329 Msa0025860:CDS
TGAAGATGACCTCTACAGTT+AGG 0.475290 1_1:+49500281 Msa0025860:CDS
GGCAGGACATTGAGAGAGAA+AGG 0.476041 1_1:+49499992 Msa0025860:intron
AATTGGTGGAACTGCCTTTG+AGG 0.476289 1_1:+49497909 Msa0025860:CDS
CAAACTTCTCAAATTTCTCA+GGG 0.479836 1_1:-49499054 None:intergenic
TCGAGGCATATCGTCCAGTT+AGG 0.479905 1_1:+49497678 Msa0025860:CDS
GAGGTTTGGAAGGTTTGATC+GGG 0.482378 1_1:+49498330 Msa0025860:CDS
CGGGAATCCTCGTCTGGAAG+GGG 0.484878 1_1:-49499690 None:intergenic
TCACAGAAAATCTCAGTGTC+AGG 0.485251 1_1:-49497791 None:intergenic
GCAAAGTTTGGGCAAAGGCT+TGG 0.485421 1_1:-49500149 None:intergenic
GTTAAGTATCTCAGCATCAA+TGG 0.488535 1_1:-49498648 None:intergenic
TGATGTCGGGAATCCTCGTC+TGG 0.489413 1_1:-49499696 None:intergenic
AGCTTTGAATATCTGATGTC+GGG 0.490617 1_1:-49499709 None:intergenic
TTGAAGTGCCCAATTGCAGC+TGG 0.490656 1_1:+49498880 Msa0025860:CDS
ATAGCATCGACCCTGCTCTT+CGG 0.492285 1_1:+49498308 Msa0025860:CDS
ATCAACTGATCCAGCCGTCC+AGG 0.492998 1_1:-49499660 None:intergenic
CTCATCAATGAAGATGATTG+AGG 0.493640 1_1:-49498149 None:intergenic
CGGTGATACAATTCTGATCA+AGG 0.494228 1_1:+49496335 Msa0025860:CDS
TGCTGGTGGTGCTGCTGACA+GGG 0.496100 1_1:+49499530 Msa0025860:CDS
CGCACTTCATCCTGAAACCA+TGG 0.497406 1_1:+49496293 Msa0025860:CDS
GAGGATCGTTTAGATGAGGT+TGG 0.497619 1_1:+49497839 Msa0025860:CDS
GAATGTGAGAGGGTTTGGTT+AGG 0.497729 1_1:-49495977 None:intergenic
GTCAACATCCTTTGCAATGG+GGG 0.502418 1_1:-49499745 None:intergenic
GGTTGTGAGAAACAATCTTA+GGG 0.503444 1_1:+49496564 Msa0025860:CDS
ATTGGTGTGAAGCCACCAAA+AGG 0.504550 1_1:+49497953 Msa0025860:CDS
CTGCTGCAAAGTTTGGGCAA+AGG 0.506510 1_1:-49500154 None:intergenic
ACTTGATTCTATTGCAACTC+AGG 0.507015 1_1:+49499291 Msa0025860:CDS
GGTAGTAGTTCAGGAGATGC+TGG 0.507175 1_1:+49499513 Msa0025860:CDS
AACCACATTGTGAGTAGCTC+GGG 0.507234 1_1:-49499190 None:intergenic
GAACATTTCAGTACCGCACT+TGG 0.508014 1_1:+49498689 Msa0025860:CDS
CCAAAGAGGGAGAAGACTAA+TGG 0.512008 1_1:+49498187 Msa0025860:CDS
GCAAACTTCATTAGTATCAA+AGG 0.512270 1_1:+49499166 Msa0025860:CDS
GAGAAACTTCAACTCTTTCG+CGG 0.515636 1_1:+49496315 Msa0025860:CDS
TCGGGAATCCTCGTCTGGAA+GGG 0.516469 1_1:-49499691 None:intergenic
TCATCAATGAAGATGATTGA+GGG 0.516809 1_1:-49498148 None:intergenic
AAGCGATAATCCTGAAGCTA+TGG 0.517073 1_1:+49500020 Msa0025860:CDS
AGAGCAGGGTCTATAATGTC+AGG 0.519523 1_1:-49499630 None:intergenic
TGAAGGAGAGCCTGTTAAAA+GGG 0.519670 1_1:+49497811 Msa0025860:CDS
ATCCATGAGGGTCAAGAGCT+GGG 0.519780 1_1:-49498233 None:intergenic
GGCATATCGTCCAGTTAGGA+AGG 0.520634 1_1:+49497682 Msa0025860:CDS
TCATCAACGACGAGACGGTT+CGG 0.521611 1_1:-49496243 None:intergenic
TGCAAAAGGGTCAGCTGCAG+CGG 0.521922 1_1:-49500235 None:intergenic
GCAACAACACAATACTCAGC+AGG 0.522065 1_1:-49497767 None:intergenic
AGATTTGCCGACAACAGTGC+TGG 0.524300 1_1:+49500201 Msa0025860:CDS
TTTGGAATGTCACCTTCAAA+GGG 0.524681 1_1:+49499073 Msa0025860:CDS
TTTGCAACTGCAAGTGCTGG+CGG 0.527145 1_1:+49500252 Msa0025860:CDS
CCAATAGACTTGAATAATTG+TGG 0.528305 1_1:-49497935 None:intergenic
GATGTCAACATCCTTTGCAA+TGG 0.530887 1_1:-49499748 None:intergenic
CTGTGGATGATACTATTGAA+GGG 0.532423 1_1:+49496659 Msa0025860:CDS
GCCAGCTTTGACATGATCTC+AGG 0.533324 1_1:-49498070 None:intergenic
GGCTCAGATTCGGGAATTGG+TGG 0.533657 1_1:+49497895 Msa0025860:CDS
TCTACTACGACCTGGACGGC+TGG 0.534075 1_1:+49499650 Msa0025860:CDS
TTATTAGGGTAAGAAAAGAA+AGG 0.535683 1_1:+49496480 Msa0025860:intron
GGCAATAGCTTTGGCCAAGA+GGG 0.537496 1_1:-49499131 None:intergenic
GGATTCAGGTTGGTTAGCCA+TGG 0.537678 1_1:-49496058 None:intergenic
TATAATGTCAGGTCGATTAG+TGG 0.537689 1_1:-49499619 None:intergenic
AGTGCCACCAGCACTGTTGT+CGG 0.538206 1_1:-49500208 None:intergenic
ATACTATTGAAGGGGTTACT+GGG 0.538555 1_1:+49496668 Msa0025860:CDS
AAATGTTAAGCGAGAACTCC+AGG 0.539350 1_1:+49498923 Msa0025860:CDS
TGGTTGTGGTAAAACCCTCT+TGG 0.543623 1_1:+49499117 Msa0025860:CDS
ATATCTTCCCAGCTGCAATT+GGG 0.543834 1_1:-49498888 None:intergenic
GATATGTTCCTTGTGAGAGG+GGG 0.547635 1_1:+49497707 Msa0025860:CDS
AATAATTGTGGATGCCTCAA+AGG 0.548058 1_1:-49497923 None:intergenic
TCCTGAGATCATGTCAAAGC+TGG 0.550232 1_1:+49498069 Msa0025860:CDS
TAATCCTGAAGCTATGGAAG+AGG 0.550285 1_1:+49500026 Msa0025860:CDS
TGATTTAGAAAAGATTGCTA+AGG 0.550906 1_1:+49498523 Msa0025860:CDS
TACAGAAATGGACGGAATGT+CGG 0.552742 1_1:+49499569 Msa0025860:CDS
CAGCACTTGCAGTTGCAAAA+GGG 0.554347 1_1:-49500248 None:intergenic
GAAAACTGTGTTTATCATTG+GGG 0.557648 1_1:+49499596 Msa0025860:CDS
CAGCTTTGAATATCTGATGT+CGG 0.557757 1_1:-49499710 None:intergenic
GCCTGTTAAAAGGGAAGATG+AGG 0.557817 1_1:+49497820 Msa0025860:CDS
AGATGAAGTTGGACGTCTTG+AGG 0.558009 1_1:+49498372 Msa0025860:CDS
GAGATCATGTCAAAGCTGGC+TGG 0.559220 1_1:+49498073 Msa0025860:CDS
AAACCACATTGTGAGTAGCT+CGG 0.560700 1_1:-49499191 None:intergenic
ACTGTTTCACGGAGAGCAGA+AGG 0.564595 1_1:-49498722 None:intergenic
CCATAACAATTACATGCGCA+CGG 0.568519 1_1:-49498267 None:intergenic
TAGCATACTTGCAAGCGCGC+TGG 0.572912 1_1:-49499827 None:intergenic
TGCTGAGATACTTAACTCAA+TGG 0.573485 1_1:+49498655 Msa0025860:CDS
AACAATCTTAGGGTTAGACT+TGG 0.576162 1_1:+49496574 Msa0025860:CDS
CTGGGACCATATATGGTCAC+GGG 0.576187 1_1:+49500486 Msa0025860:three_prime_UTR
AAGTGAATAAAGAATGTGAG+AGG 0.584773 1_1:-49495988 None:intergenic
TTGGTGTGAAGCCACCAAAA+GGG 0.584782 1_1:+49497954 Msa0025860:CDS
CAAACTTTGCAGCAGTCAAG+AGG 0.585980 1_1:+49500162 Msa0025860:CDS
GCGAGTTCATATTCTTCCTG+TGG 0.586206 1_1:+49496642 Msa0025860:CDS
GTTGGTTATGATGATGTTGG+TGG 0.586235 1_1:+49497857 Msa0025860:CDS
TCTGGGACCATATATGGTCA+CGG 0.589674 1_1:+49500485 Msa0025860:three_prime_UTR
GGAGATATGTTCCTTGTGAG+AGG 0.590793 1_1:+49497704 Msa0025860:CDS
AGAGGATAATGAAGACGATG+AGG 0.590957 1_1:+49500044 Msa0025860:CDS
AACGAAGCGCGATTTCAGTA+CGG 0.592595 1_1:+49496197 Msa0025860:CDS
AGATATGTTCCTTGTGAGAG+GGG 0.593916 1_1:+49497706 Msa0025860:CDS
GAGGTTGGTTATGATGATGT+TGG 0.597279 1_1:+49497854 Msa0025860:CDS
AAAGAGTTGAAGTTTCTCCA+TGG 0.598637 1_1:-49496310 None:intergenic
TTCAGGTTGGTTAGCCATGG+AGG 0.600074 1_1:-49496055 None:intergenic
GACCCTGCTCTACTACGACC+TGG 0.600678 1_1:+49499642 Msa0025860:CDS
GAGATATGTTCCTTGTGAGA+GGG 0.602152 1_1:+49497705 Msa0025860:CDS
ATCAGCACCAACATAACCAT+GGG 0.603295 1_1:-49498549 None:intergenic
AGATGAGGATCGTTTAGATG+AGG 0.604669 1_1:+49497835 Msa0025860:CDS
GCATCGACCCTGCTCTTCGG+AGG 0.608582 1_1:+49498311 Msa0025860:CDS
TGTGGATGATACTATTGAAG+GGG 0.608629 1_1:+49496660 Msa0025860:CDS
CAGCTTCATCAACGACGAGA+CGG 0.608880 1_1:-49496248 None:intergenic
TTAAAGTCTTACCAGATCCA+GGG 0.612077 1_1:-49497994 None:intergenic
TGCAGCTGGGAAGATATTGG+TGG 0.612280 1_1:+49498894 Msa0025860:CDS
ATTGGTGTACCAGATGAAGT+TGG 0.615281 1_1:+49498361 Msa0025860:CDS
GGGAATCCTCGTCTGGAAGG+GGG 0.617154 1_1:-49499689 None:intergenic
GCAGACTGTTCAATATCCAG+TGG 0.617349 1_1:+49499027 Msa0025860:intron
AAGGAAACCCATGGTTATGT+TGG 0.618105 1_1:+49498542 Msa0025860:CDS
AGACTCCATTGCTCCAAAGA+GGG 0.619206 1_1:+49498174 Msa0025860:CDS
CATAACAATTACATGCGCAC+GGG 0.621798 1_1:-49498266 None:intergenic
ACGAATCGGAGGATTCAGGT+TGG 0.622076 1_1:-49496068 None:intergenic
TAGACTCCATTGCTCCAAAG+AGG 0.622591 1_1:+49498173 Msa0025860:CDS
GTCCAGGTCGTAGTAGAGCA+GGG 0.623019 1_1:-49499644 None:intergenic
GAGTGAAAGTAATCTGAGGA+AGG 0.624269 1_1:+49498099 Msa0025860:CDS
GCTCTTGCCAAGTACACTCA+AGG 0.625937 1_1:+49499774 Msa0025860:CDS
AAACTTTGCAGCAGTCAAGA+GGG 0.627316 1_1:+49500163 Msa0025860:CDS
CCTTCAATAGTATCATCCAC+AGG 0.627350 1_1:-49496658 None:intergenic
GGATTTAAGCCCATCCATGA+GGG 0.627404 1_1:-49498245 None:intergenic
TGGAATGTCACCTTCAAAGG+GGG 0.628082 1_1:+49499075 Msa0025860:CDS
TATAAGAGAAAACATCGAGA+AGG 0.629031 1_1:+49499848 Msa0025860:CDS
AAGATTGCTAAGGAAACCCA+TGG 0.630077 1_1:+49498533 Msa0025860:CDS
TGGCAATAGCTTTGGCCAAG+AGG 0.630157 1_1:-49499132 None:intergenic
AACTGTAGACCTAACTGTAG+AGG 0.630782 1_1:-49500290 None:intergenic
AGAAAGTGAGGCTAATGTGA+GGG 0.635263 1_1:+49499216 Msa0025860:CDS
TTCCAAACCTCCGAAGAGCA+GGG 0.636312 1_1:-49498318 None:intergenic
TCATCAAAGAAAAGAACACA+TGG 0.639306 1_1:-49499268 None:intergenic
GCATATCGTCCAGTTAGGAA+GGG 0.644679 1_1:+49497683 Msa0025860:CDS
AATCAGCACCAACATAACCA+TGG 0.646369 1_1:-49498550 None:intergenic
CTGCTCTACTACGACCTGGA+CGG 0.648155 1_1:+49499646 Msa0025860:CDS
AAGTACACTCAAGGCTTCAG+TGG 0.648697 1_1:+49499783 Msa0025860:CDS
AATGTGGTTTGGAGAAAGTG+AGG 0.650668 1_1:+49499204 Msa0025860:CDS
GGAAGAGGATTACGAATCGG+AGG 0.651891 1_1:-49496079 None:intergenic
AGTGAATAAAGAATGTGAGA+GGG 0.653126 1_1:-49495987 None:intergenic
TGAAGTGCCCAATTGCAGCT+GGG 0.653466 1_1:+49498881 Msa0025860:CDS
TTTGCCGACAACAGTGCTGG+TGG 0.655107 1_1:+49500204 Msa0025860:CDS
ATATGTTCCTTGTGAGAGGG+GGG 0.655286 1_1:+49497708 Msa0025860:CDS
TAAAGTCTTACCAGATCCAG+GGG 0.658292 1_1:-49497993 None:intergenic
GGGATTTAAGCCCATCCATG+AGG 0.663629 1_1:-49498246 None:intergenic
GAGAAAGTGAGGCTAATGTG+AGG 0.663629 1_1:+49499215 Msa0025860:CDS
CAACAACACAATACTCAGCA+GGG 0.666697 1_1:-49497766 None:intergenic
TGGTGGTGTTAGAAAGCAGA+TGG 0.677645 1_1:+49497874 Msa0025860:CDS
TGTCAACATCCTTTGCAATG+GGG 0.677894 1_1:-49499746 None:intergenic
GTGAGAGTGAAAGTAATCTG+AGG 0.683292 1_1:+49498095 Msa0025860:CDS
AGGACATTGAGAGAGAAAGG+AGG 0.691679 1_1:+49499995 Msa0025860:intron
TTGGAATGTCACCTTCAAAG+GGG 0.692077 1_1:+49499074 Msa0025860:CDS
CAACTGCTTACAGAAATGGA+CGG 0.693068 1_1:+49499561 Msa0025860:CDS
AGTAGTTCAGGAGATGCTGG+TGG 0.701928 1_1:+49499516 Msa0025860:CDS
GTCCCGAGCTACTCACAATG+TGG 0.708759 1_1:+49499188 Msa0025860:CDS
AGGATTGCTTGATCCAAGTG+CGG 0.712751 1_1:-49498702 None:intergenic
TGAGATACTTAACTCAATGG+CGG 0.713084 1_1:+49498658 Msa0025860:CDS
TAACTGGACGATATGCCTCG+AGG 0.731678 1_1:-49497676 None:intergenic
TGTTAAGCGAGAACTCCAGG+AGG 0.754733 1_1:+49498926 Msa0025860:CDS
AAAGTCTTACCAGATCCAGG+GGG 0.808828 1_1:-49497992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATAATATATTTTTTTGA+TGG + chr1_1:49497400-49497419 Msa0025860:intron 10.0%
!!! TTTTGTTTATTTTTTCAGTA+AGG + chr1_1:49496173-49496192 Msa0025860:intron 15.0%
!!! TTTGTTTATTTTTTCAGTAA+GGG + chr1_1:49496174-49496193 Msa0025860:intron 15.0%
!! AAAAACTGTTCAATAAAAAA+GGG - chr1_1:49496859-49496878 None:intergenic 15.0%
!!! TTTTCTATTATTTAATTTGC+AGG + chr1_1:49498499-49498518 Msa0025860:intron 15.0%
!!! TTTAATTTAAACAGTTAATG+AGG - chr1_1:49499466-49499485 None:intergenic 15.0%
!!! AAACATTTGAAACAATTATT+TGG + chr1_1:49500456-49500475 Msa0025860:three_prime_UTR 15.0%
!! AATAAGCTAATATTAGAAAT+AGG - chr1_1:49500630-49500649 None:intergenic 15.0%
!! AAATTGAATTGAGAAATTGA+AGG - chr1_1:49496124-49496143 None:intergenic 20.0%
!!! CTTTTTACAAAAGGATTTTA+GGG - chr1_1:49496403-49496422 None:intergenic 20.0%
!!! TCTTTTTACAAAAGGATTTT+AGG - chr1_1:49496404-49496423 None:intergenic 20.0%
!!! AAATCAGATCTTTTTACAAA+AGG - chr1_1:49496412-49496431 None:intergenic 20.0%
!!! TGATTCATTGTTGATTTATT+AGG + chr1_1:49496465-49496484 Msa0025860:intron 20.0%
!!! GATTCATTGTTGATTTATTA+GGG + chr1_1:49496466-49496485 Msa0025860:intron 20.0%
!! TATCCAAACAATAATCAAAA+CGG - chr1_1:49496802-49496821 None:intergenic 20.0%
!! GAAAAACTGTTCAATAAAAA+AGG - chr1_1:49496860-49496879 None:intergenic 20.0%
!!! TTGTATCATAGATGTATTTT+TGG + chr1_1:49497295-49497314 Msa0025860:intron 20.0%
!!! TTGATAAGATATTTTGACAA+TGG + chr1_1:49497332-49497351 Msa0025860:intron 20.0%
!! ATATTATCATGAATCAACAA+TGG - chr1_1:49497390-49497409 None:intergenic 20.0%
!! AAATGAATATCTATTCACAA+GGG - chr1_1:49497477-49497496 None:intergenic 20.0%
!! AAAATGAATATCTATTCACA+AGG - chr1_1:49497478-49497497 None:intergenic 20.0%
!!! TTTGTTCTGTCATTTTTTAT+TGG + chr1_1:49497572-49497591 Msa0025860:intron 20.0%
!! TAGATAAATAACACAACTTA+GGG - chr1_1:49498457-49498476 None:intergenic 20.0%
!! TTTATCTGATAATCTAATCA+TGG - chr1_1:49499333-49499352 None:intergenic 20.0%
!!! AATCAAAAGGTACATAAATT+AGG - chr1_1:49500347-49500366 None:intergenic 20.0%
!!! TACCTTTTGATTTGTTTTTA+TGG + chr1_1:49500355-49500374 Msa0025860:three_prime_UTR 20.0%
!! TTCCATAAAAACAAATCAAA+AGG - chr1_1:49500360-49500379 None:intergenic 20.0%
!! ATTGTTTCAAATGTTTAGAA+AGG - chr1_1:49500452-49500471 None:intergenic 20.0%
!! ATTGTTGAATTTATTCTTCA+AGG - chr1_1:49500587-49500606 None:intergenic 20.0%
!!! TTTTGAATTAGGGTTAGTTT+GGG - chr1_1:49496380-49496399 None:intergenic 25.0%
!!! GATTTTAGGGTTTTGAATTA+GGG - chr1_1:49496390-49496409 None:intergenic 25.0%
! TATGTGATTAGTATGTGATT+AGG + chr1_1:49496433-49496452 Msa0025860:intron 25.0%
! TTATTAGGGTAAGAAAAGAA+AGG + chr1_1:49496480-49496499 Msa0025860:intron 25.0%
! ACCTTATTCATTCTTATCTT+TGG - chr1_1:49496547-49496566 None:intergenic 25.0%
! ATCCAAACAATAATCAAAAC+GGG - chr1_1:49496801-49496820 None:intergenic 25.0%
!! AGCACAAAGCTAATTTTATT+TGG + chr1_1:49496931-49496950 Msa0025860:intron 25.0%
!!! ATTGTATCATAGCTTTGTTT+TGG + chr1_1:49497362-49497381 Msa0025860:intron 25.0%
!!! TTGTATCATAGCTTTGTTTT+GGG + chr1_1:49497363-49497382 Msa0025860:intron 25.0%
! TGTTCATTGAAGTTAAATGT+TGG + chr1_1:49497532-49497551 Msa0025860:intron 25.0%
! ATAAGCTGCAAAAGAAAAAA+AGG - chr1_1:49497654-49497673 None:intergenic 25.0%
!!! TCATATTTTTTGTATGGATG+CGG - chr1_1:49498402-49498421 None:intergenic 25.0%
!!! CAAGCTTCATATTTTTTGTA+TGG - chr1_1:49498408-49498427 None:intergenic 25.0%
! AGATAAATAACACAACTTAG+GGG - chr1_1:49498456-49498475 None:intergenic 25.0%
! CTAGATAAATAACACAACTT+AGG - chr1_1:49498458-49498477 None:intergenic 25.0%
! TGATTTAGAAAAGATTGCTA+AGG + chr1_1:49498523-49498542 Msa0025860:CDS 25.0%
! CATAAAAGATTATTGAGCAA+TGG - chr1_1:49498810-49498829 None:intergenic 25.0%
! AAGAAAACTGTGTTTATCAT+TGG + chr1_1:49499594-49499613 Msa0025860:CDS 25.0%
! AGAAAACTGTGTTTATCATT+GGG + chr1_1:49499595-49499614 Msa0025860:CDS 25.0%
! ATAGTGTACATAAGTCAAAA+GGG - chr1_1:49499904-49499923 None:intergenic 25.0%
! AATAGTGTACATAAGTCAAA+AGG - chr1_1:49499905-49499924 None:intergenic 25.0%
!! TTCTGTAGAACTTTTCTAAT+TGG + chr1_1:49499928-49499947 Msa0025860:intron 25.0%
!!! TGATTTGTTTTTATGGAATC+TGG + chr1_1:49500362-49500381 Msa0025860:three_prime_UTR 25.0%
!! TGATGTACCAATATCTTTTA+CGG - chr1_1:49500418-49500437 None:intergenic 25.0%
! AAAGATATTGGTACATCATT+AGG + chr1_1:49500420-49500439 Msa0025860:three_prime_UTR 25.0%
! TTAGGTTTTTATAGTGTGGT+GGG - chr1_1:49495962-49495981 None:intergenic 30.0%
! TTGGTTAGGTTTTTATAGTG+TGG - chr1_1:49495966-49495985 None:intergenic 30.0%
AGTGAATAAAGAATGTGAGA+GGG - chr1_1:49495990-49496009 None:intergenic 30.0%
AAGTGAATAAAGAATGTGAG+AGG - chr1_1:49495991-49496010 None:intergenic 30.0%
!!! GTTTTGAATTAGGGTTAGTT+TGG - chr1_1:49496381-49496400 None:intergenic 30.0%
!!! GGATTTTAGGGTTTTGAATT+AGG - chr1_1:49496391-49496410 None:intergenic 30.0%
GCCAAAGATAAGAATGAATA+AGG + chr1_1:49496543-49496562 Msa0025860:CDS 30.0%
! ATAAGGTTAGTTAGACTGTT+TGG - chr1_1:49497202-49497221 None:intergenic 30.0%
AACAACAGTATTCTTTACGA+AGG - chr1_1:49497434-49497453 None:intergenic 30.0%
CCAATAGACTTGAATAATTG+TGG - chr1_1:49497938-49497957 None:intergenic 30.0%
CCACAATTATTCAAGTCTAT+TGG + chr1_1:49497935-49497954 Msa0025860:CDS 30.0%
! GCTTTCTTTTTCTGTATCAA+TGG + chr1_1:49498046-49498065 Msa0025860:CDS 30.0%
TCATCAATGAAGATGATTGA+GGG - chr1_1:49498151-49498170 None:intergenic 30.0%
GATAAATAACACAACTTAGG+GGG - chr1_1:49498455-49498474 None:intergenic 30.0%
CTACAATACTTACTGTTTCA+CGG - chr1_1:49498736-49498755 None:intergenic 30.0%
AAAGATTATTGAGCAATGGA+GGG - chr1_1:49498806-49498825 None:intergenic 30.0%
AAAAGATTATTGAGCAATGG+AGG - chr1_1:49498807-49498826 None:intergenic 30.0%
AAAGATGGAGTTACAAAGTT+TGG - chr1_1:49498843-49498862 None:intergenic 30.0%
CAAACTTCTCAAATTTCTCA+GGG - chr1_1:49499057-49499076 None:intergenic 30.0%
GCAAACTTCATTAGTATCAA+AGG + chr1_1:49499166-49499185 Msa0025860:CDS 30.0%
TCATCAAAGAAAAGAACACA+TGG - chr1_1:49499271-49499290 None:intergenic 30.0%
CTCATGAAGAGGAAATTTAT+CGG + chr1_1:49499386-49499405 Msa0025860:intron 30.0%
AAACAATTACAGGAGCTTAA+AGG - chr1_1:49499443-49499462 None:intergenic 30.0%
GTTAATGAGGAAACAATTAC+AGG - chr1_1:49499453-49499472 None:intergenic 30.0%
GAAAACTGTGTTTATCATTG+GGG + chr1_1:49499596-49499615 Msa0025860:CDS 30.0%
TATAAGAGAAAACATCGAGA+AGG + chr1_1:49499848-49499867 Msa0025860:CDS 30.0%
AAAAGGGAATGAGAGAAAAA+AGG - chr1_1:49499888-49499907 None:intergenic 30.0%
!!! CAGTTTGCTGTCTTTTATTT+TGG + chr1_1:49500308-49500327 Msa0025860:three_prime_UTR 30.0%
! GTTAGGTTTTTATAGTGTGG+TGG - chr1_1:49495963-49495982 None:intergenic 35.0%
ATAAAGAATGTGAGAGGGTT+TGG - chr1_1:49495985-49496004 None:intergenic 35.0%
GATGAAGAGAATTGGGAATT+GGG - chr1_1:49496030-49496049 None:intergenic 35.0%
AGATGAAGAGAATTGGGAAT+TGG - chr1_1:49496031-49496050 None:intergenic 35.0%
GGAAGAAGATGAAGAGAATT+GGG - chr1_1:49496037-49496056 None:intergenic 35.0%
AGGAAGAAGATGAAGAGAAT+TGG - chr1_1:49496038-49496057 None:intergenic 35.0%
AAAGAGTTGAAGTTTCTCCA+TGG - chr1_1:49496313-49496332 None:intergenic 35.0%
AGGTTGTGAGAAACAATCTT+AGG + chr1_1:49496563-49496582 Msa0025860:CDS 35.0%
GGTTGTGAGAAACAATCTTA+GGG + chr1_1:49496564-49496583 Msa0025860:CDS 35.0%
AACAATCTTAGGGTTAGACT+TGG + chr1_1:49496574-49496593 Msa0025860:CDS 35.0%
CAATGTCCTGATGTCAAATA+TGG + chr1_1:49496616-49496635 Msa0025860:CDS 35.0%
CTGTGGATGATACTATTGAA+GGG + chr1_1:49496659-49496678 Msa0025860:CDS 35.0%
TGTGGATGATACTATTGAAG+GGG + chr1_1:49496660-49496679 Msa0025860:CDS 35.0%
ATACTATTGAAGGGGTTACT+GGG + chr1_1:49496668-49496687 Msa0025860:CDS 35.0%
!!! GACCCGTTTTGATTATTGTT+TGG + chr1_1:49496796-49496815 Msa0025860:intron 35.0%
AAGATTAAAGACAAGCGCTT+GGG - chr1_1:49496972-49496991 None:intergenic 35.0%
AAAGATTAAAGACAAGCGCT+TGG - chr1_1:49496973-49496992 None:intergenic 35.0%
TGAGCTAACTAACTGACATA+AGG - chr1_1:49497219-49497238 None:intergenic 35.0%
AAGGGTCAATCTACAGAAAA+GGG - chr1_1:49497459-49497478 None:intergenic 35.0%
AATAATTGTGGATGCCTCAA+AGG - chr1_1:49497926-49497945 None:intergenic 35.0%
! TACAACAAAATCCCTTTTGG+TGG - chr1_1:49497968-49497987 None:intergenic 35.0%
! CCATACAACAAAATCCCTTT+TGG - chr1_1:49497971-49497990 None:intergenic 35.0%
!! CCAAAAGGGATTTTGTTGTA+TGG + chr1_1:49497968-49497987 Msa0025860:CDS 35.0%
TTAAAGTCTTACCAGATCCA+GGG - chr1_1:49497997-49498016 None:intergenic 35.0%
ATTAAAGTCTTACCAGATCC+AGG - chr1_1:49497998-49498017 None:intergenic 35.0%
CTCATCAATGAAGATGATTG+AGG - chr1_1:49498152-49498171 None:intergenic 35.0%
TTTGATCGGGAGATTGATAT+TGG + chr1_1:49498343-49498362 Msa0025860:CDS 35.0%
CATCAATGGTTTCATCTTCT+AGG - chr1_1:49498637-49498656 None:intergenic 35.0%
GTTAAGTATCTCAGCATCAA+TGG - chr1_1:49498651-49498670 None:intergenic 35.0%
TGCTGAGATACTTAACTCAA+TGG + chr1_1:49498655-49498674 Msa0025860:CDS 35.0%
TGAGATACTTAACTCAATGG+CGG + chr1_1:49498658-49498677 Msa0025860:CDS 35.0%
TGTTTCTTATCATCAGCTTC+TGG + chr1_1:49498981-49499000 Msa0025860:intron 35.0%
GTTTCTTATCATCAGCTTCT+GGG + chr1_1:49498982-49499001 Msa0025860:intron 35.0%
CCAAACTTCTCAAATTTCTC+AGG - chr1_1:49499058-49499077 None:intergenic 35.0%
CCTGAGAAATTTGAGAAGTT+TGG + chr1_1:49499055-49499074 Msa0025860:CDS 35.0%
! TTTGGAATGTCACCTTCAAA+GGG + chr1_1:49499073-49499092 Msa0025860:CDS 35.0%
ACATTCATTGGCAATAGCTT+TGG - chr1_1:49499143-49499162 None:intergenic 35.0%
! GAAGTTTGCTTGACATTCAT+TGG - chr1_1:49499155-49499174 None:intergenic 35.0%
! GAAATTTTTGACAAAGCTCG+TGG + chr1_1:49499238-49499257 Msa0025860:CDS 35.0%
ACTTGATTCTATTGCAACTC+AGG + chr1_1:49499291-49499310 Msa0025860:CDS 35.0%
AATCTAATCATGGCTCGATA+TGG - chr1_1:49499323-49499342 None:intergenic 35.0%
GAATCAACTGCTTACAGAAA+TGG + chr1_1:49499557-49499576 Msa0025860:CDS 35.0%
TATAATGTCAGGTCGATTAG+TGG - chr1_1:49499622-49499641 None:intergenic 35.0%
!! AGCTTTGAATATCTGATGTC+GGG - chr1_1:49499712-49499731 None:intergenic 35.0%
!! CAGCTTTGAATATCTGATGT+CGG - chr1_1:49499713-49499732 None:intergenic 35.0%
ATGTCAACATCCTTTGCAAT+GGG - chr1_1:49499750-49499769 None:intergenic 35.0%
!! AACATCGAGAAGGTACATTT+TGG + chr1_1:49499858-49499877 Msa0025860:intron 35.0%
!! ACATCGAGAAGGTACATTTT+GGG + chr1_1:49499859-49499878 Msa0025860:intron 35.0%
CATTGCTCCGTAAAAGATAT+TGG + chr1_1:49500408-49500427 Msa0025860:three_prime_UTR 35.0%
ACAATTATTTGGTCAGCTTC+TGG + chr1_1:49500467-49500486 Msa0025860:three_prime_UTR 35.0%
CAATTATTTGGTCAGCTTCT+GGG + chr1_1:49500468-49500487 Msa0025860:three_prime_UTR 35.0%
AGTGGAAGAGGATTACGAAT+CGG - chr1_1:49496085-49496104 None:intergenic 40.0%
GGAATTGAGATCTGAGAAAG+TGG - chr1_1:49496103-49496122 None:intergenic 40.0%
TGAAGTTTCTCCATGGTTTC+AGG - chr1_1:49496306-49496325 None:intergenic 40.0%
GAGAAACTTCAACTCTTTCG+CGG + chr1_1:49496315-49496334 Msa0025860:CDS 40.0%
CGGTGATACAATTCTGATCA+AGG + chr1_1:49496335-49496354 Msa0025860:CDS 40.0%
CGCTTTCCATATTTGACATC+AGG - chr1_1:49496625-49496644 None:intergenic 40.0%
CCTTCAATAGTATCATCCAC+AGG - chr1_1:49496661-49496680 None:intergenic 40.0%
CCTGTGGATGATACTATTGA+AGG + chr1_1:49496658-49496677 Msa0025860:CDS 40.0%
GATACTATTGAAGGGGTTAC+TGG + chr1_1:49496667-49496686 Msa0025860:CDS 40.0%
!!! CTTTTTTCAAGCCTCGTCTA+GGG - chr1_1:49497262-49497281 None:intergenic 40.0%
!!! TCTTTTTTCAAGCCTCGTCT+AGG - chr1_1:49497263-49497282 None:intergenic 40.0%
CAAGGGTCAATCTACAGAAA+AGG - chr1_1:49497460-49497479 None:intergenic 40.0%
! TTTTGCAGCTTATTTCCTCG+AGG + chr1_1:49497661-49497680 Msa0025860:intron 40.0%
AACATATCTCCCTTCCTAAC+TGG - chr1_1:49497695-49497714 None:intergenic 40.0%
GAGATATGTTCCTTGTGAGA+GGG + chr1_1:49497705-49497724 Msa0025860:CDS 40.0%
AGATATGTTCCTTGTGAGAG+GGG + chr1_1:49497706-49497725 Msa0025860:CDS 40.0%
! GATGAGAAGTGTGGAATTCA+AGG + chr1_1:49497730-49497749 Msa0025860:CDS 40.0%
CAACAACACAATACTCAGCA+GGG - chr1_1:49497769-49497788 None:intergenic 40.0%
TCACAGAAAATCTCAGTGTC+AGG - chr1_1:49497794-49497813 None:intergenic 40.0%
! GACACTGAGATTTTCTGTGA+AGG + chr1_1:49497794-49497813 Msa0025860:CDS 40.0%
TGAAGGAGAGCCTGTTAAAA+GGG + chr1_1:49497811-49497830 Msa0025860:CDS 40.0%
! TCCTCATCTTCCCTTTTAAC+AGG - chr1_1:49497824-49497843 None:intergenic 40.0%
AGATGAGGATCGTTTAGATG+AGG + chr1_1:49497835-49497854 Msa0025860:CDS 40.0%
! GAGGTTGGTTATGATGATGT+TGG + chr1_1:49497854-49497873 Msa0025860:CDS 40.0%
! GTTGGTTATGATGATGTTGG+TGG + chr1_1:49497857-49497876 Msa0025860:CDS 40.0%
TAAAGTCTTACCAGATCCAG+GGG - chr1_1:49497996-49498015 None:intergenic 40.0%
GTGAGAGTGAAAGTAATCTG+AGG + chr1_1:49498095-49498114 Msa0025860:CDS 40.0%
GAGTGAAAGTAATCTGAGGA+AGG + chr1_1:49498099-49498118 Msa0025860:CDS 40.0%
CATAACAATTACATGCGCAC+GGG - chr1_1:49498269-49498288 None:intergenic 40.0%
CCATAACAATTACATGCGCA+CGG - chr1_1:49498270-49498289 None:intergenic 40.0%
CGTGCGCATGTAATTGTTAT+GGG + chr1_1:49498268-49498287 Msa0025860:CDS 40.0%
ATTGGTGTACCAGATGAAGT+TGG + chr1_1:49498361-49498380 Msa0025860:CDS 40.0%
AAGATTGCTAAGGAAACCCA+TGG + chr1_1:49498533-49498552 Msa0025860:CDS 40.0%
AAGGAAACCCATGGTTATGT+TGG + chr1_1:49498542-49498561 Msa0025860:CDS 40.0%
ATCAGCACCAACATAACCAT+GGG - chr1_1:49498552-49498571 None:intergenic 40.0%
AATCAGCACCAACATAACCA+TGG - chr1_1:49498553-49498572 None:intergenic 40.0%
TCAGTGCATCAGAGAGAAAA+TGG + chr1_1:49498601-49498620 Msa0025860:CDS 40.0%
TCCATCTTTGCTAATGAACC+AGG + chr1_1:49498854-49498873 Msa0025860:intron 40.0%
ACCTGGTTCATTAGCAAAGA+TGG - chr1_1:49498858-49498877 None:intergenic 40.0%
ATATCTTCCCAGCTGCAATT+GGG - chr1_1:49498891-49498910 None:intergenic 40.0%
AATATCTTCCCAGCTGCAAT+TGG - chr1_1:49498892-49498911 None:intergenic 40.0%
AATTGCAGCTGGGAAGATAT+TGG + chr1_1:49498891-49498910 Msa0025860:CDS 40.0%
AAATGTTAAGCGAGAACTCC+AGG + chr1_1:49498923-49498942 Msa0025860:CDS 40.0%
! GTTTGGAATGTCACCTTCAA+AGG + chr1_1:49499072-49499091 Msa0025860:CDS 40.0%
TTGGAATGTCACCTTCAAAG+GGG + chr1_1:49499074-49499093 Msa0025860:CDS 40.0%
AAACCACATTGTGAGTAGCT+CGG - chr1_1:49499194-49499213 None:intergenic 40.0%
! AATGTGGTTTGGAGAAAGTG+AGG + chr1_1:49499204-49499223 Msa0025860:CDS 40.0%
AGAAAGTGAGGCTAATGTGA+GGG + chr1_1:49499216-49499235 Msa0025860:CDS 40.0%
GCACACTAATTAGCACTCTA+TGG - chr1_1:49499421-49499440 None:intergenic 40.0%
TACTACCTCTCTGCAAGATA+AGG - chr1_1:49499500-49499519 None:intergenic 40.0%
CAACTGCTTACAGAAATGGA+CGG + chr1_1:49499561-49499580 Msa0025860:CDS 40.0%
TACAGAAATGGACGGAATGT+CGG + chr1_1:49499569-49499588 Msa0025860:CDS 40.0%
TGTCAACATCCTTTGCAATG+GGG - chr1_1:49499749-49499768 None:intergenic 40.0%
GATGTCAACATCCTTTGCAA+TGG - chr1_1:49499751-49499770 None:intergenic 40.0%
!! CATCGAGAAGGTACATTTTG+GGG + chr1_1:49499860-49499879 Msa0025860:intron 40.0%
! TTTTCTCCCTAACTTCTCTG+TGG + chr1_1:49499971-49499990 Msa0025860:intron 40.0%
AAGCGATAATCCTGAAGCTA+TGG + chr1_1:49500020-49500039 Msa0025860:CDS 40.0%
TAATCCTGAAGCTATGGAAG+AGG + chr1_1:49500026-49500045 Msa0025860:CDS 40.0%
TTATCCTCTTCCATAGCTTC+AGG - chr1_1:49500033-49500052 None:intergenic 40.0%
AGAGGATAATGAAGACGATG+AGG + chr1_1:49500044-49500063 Msa0025860:CDS 40.0%
TCTTGACTGCTGCAAAGTTT+GGG - chr1_1:49500163-49500182 None:intergenic 40.0%
AAACTTTGCAGCAGTCAAGA+GGG + chr1_1:49500163-49500182 Msa0025860:CDS 40.0%
TGAAGATGACCTCTACAGTT+AGG + chr1_1:49500281-49500300 Msa0025860:CDS 40.0%
AACTGTAGACCTAACTGTAG+AGG - chr1_1:49500293-49500312 None:intergenic 40.0%
! GAATGTGAGAGGGTTTGGTT+AGG - chr1_1:49495980-49495999 None:intergenic 45.0%
CTCTTCATCTTCTTCCTCCA+TGG + chr1_1:49496041-49496060 Msa0025860:exon 45.0%
GATTACGAATCGGAGGATTC+AGG - chr1_1:49496075-49496094 None:intergenic 45.0%
GAGATCTGAGAAAGTGGAAG+AGG - chr1_1:49496097-49496116 None:intergenic 45.0%
AACGAAGCGCGATTTCAGTA+CGG + chr1_1:49496197-49496216 Msa0025860:CDS 45.0%
GCGAGTTCATATTCTTCCTG+TGG + chr1_1:49496642-49496661 Msa0025860:CDS 45.0%
GCATATCGTCCAGTTAGGAA+GGG + chr1_1:49497683-49497702 Msa0025860:CDS 45.0%
GGAGATATGTTCCTTGTGAG+AGG + chr1_1:49497704-49497723 Msa0025860:CDS 45.0%
GATATGTTCCTTGTGAGAGG+GGG + chr1_1:49497707-49497726 Msa0025860:CDS 45.0%
ATATGTTCCTTGTGAGAGGG+GGG + chr1_1:49497708-49497727 Msa0025860:CDS 45.0%
GCAACAACACAATACTCAGC+AGG - chr1_1:49497770-49497789 None:intergenic 45.0%
GTGAAGGAGAGCCTGTTAAA+AGG + chr1_1:49497810-49497829 Msa0025860:CDS 45.0%
GCCTGTTAAAAGGGAAGATG+AGG + chr1_1:49497820-49497839 Msa0025860:CDS 45.0%
GAGGATCGTTTAGATGAGGT+TGG + chr1_1:49497839-49497858 Msa0025860:CDS 45.0%
! TGGTGGTGTTAGAAAGCAGA+TGG + chr1_1:49497874-49497893 Msa0025860:CDS 45.0%
GAAAGCAGATGGCTCAGATT+CGG + chr1_1:49497885-49497904 Msa0025860:CDS 45.0%
AAAGCAGATGGCTCAGATTC+GGG + chr1_1:49497886-49497905 Msa0025860:CDS 45.0%
AATTGGTGGAACTGCCTTTG+AGG + chr1_1:49497909-49497928 Msa0025860:CDS 45.0%
ATTGGTGTGAAGCCACCAAA+AGG + chr1_1:49497953-49497972 Msa0025860:CDS 45.0%
TTGGTGTGAAGCCACCAAAA+GGG + chr1_1:49497954-49497973 Msa0025860:CDS 45.0%
!! ATTTTGTTGTATGGACCCCC+TGG + chr1_1:49497977-49497996 Msa0025860:CDS 45.0%
AAAGTCTTACCAGATCCAGG+GGG - chr1_1:49497995-49498014 None:intergenic 45.0%
CGAGCTGTTGCAAATGAAAC+TGG + chr1_1:49498022-49498041 Msa0025860:CDS 45.0%
TCCTGAGATCATGTCAAAGC+TGG + chr1_1:49498069-49498088 Msa0025860:CDS 45.0%
TAGACTCCATTGCTCCAAAG+AGG + chr1_1:49498173-49498192 Msa0025860:CDS 45.0%
AGACTCCATTGCTCCAAAGA+GGG + chr1_1:49498174-49498193 Msa0025860:CDS 45.0%
!! CCATTAGTCTTCTCCCTCTT+TGG - chr1_1:49498190-49498209 None:intergenic 45.0%
CCAAAGAGGGAGAAGACTAA+TGG + chr1_1:49498187-49498206 Msa0025860:CDS 45.0%
GGATTTAAGCCCATCCATGA+GGG - chr1_1:49498248-49498267 None:intergenic 45.0%
CCGTGCGCATGTAATTGTTA+TGG + chr1_1:49498267-49498286 Msa0025860:CDS 45.0%
GGAGGTTTGGAAGGTTTGAT+CGG + chr1_1:49498329-49498348 Msa0025860:CDS 45.0%
GAGGTTTGGAAGGTTTGATC+GGG + chr1_1:49498330-49498349 Msa0025860:CDS 45.0%
TCAAGACGTCCAACTTCATC+TGG - chr1_1:49498373-49498392 None:intergenic 45.0%
AGATGAAGTTGGACGTCTTG+AGG + chr1_1:49498372-49498391 Msa0025860:CDS 45.0%
GAACATTTCAGTACCGCACT+TGG + chr1_1:49498689-49498708 Msa0025860:CDS 45.0%
AGGATTGCTTGATCCAAGTG+CGG - chr1_1:49498705-49498724 None:intergenic 45.0%
AATTGGGCACTTCAACAACC+TGG - chr1_1:49498875-49498894 None:intergenic 45.0%
GCAGACTGTTCAATATCCAG+TGG + chr1_1:49499027-49499046 Msa0025860:intron 45.0%
! AATTTCTCAGGGTGTTCCAC+TGG - chr1_1:49499046-49499065 None:intergenic 45.0%
TGGAATGTCACCTTCAAAGG+GGG + chr1_1:49499075-49499094 Msa0025860:CDS 45.0%
TAGAACAGAACCCCCTTTGA+AGG - chr1_1:49499088-49499107 None:intergenic 45.0%
TCAAAGGGGGTTCTGTTCTA+TGG + chr1_1:49499088-49499107 Msa0025860:CDS 45.0%
! AAGAGGGTTTTACCACAACC+AGG - chr1_1:49499118-49499137 None:intergenic 45.0%
TGGTTGTGGTAAAACCCTCT+TGG + chr1_1:49499117-49499136 Msa0025860:CDS 45.0%
AACCACATTGTGAGTAGCTC+GGG - chr1_1:49499193-49499212 None:intergenic 45.0%
GAGCTACTCACAATGTGGTT+TGG + chr1_1:49499193-49499212 Msa0025860:CDS 45.0%
GAGAAAGTGAGGCTAATGTG+AGG + chr1_1:49499215-49499234 Msa0025860:CDS 45.0%
ATGTGCTTGTGCTCATGAAG+AGG + chr1_1:49499375-49499394 Msa0025860:intron 45.0%
TTGCAGAGAGGTAGTAGTTC+AGG + chr1_1:49499504-49499523 Msa0025860:intron 45.0%
AGAGCAGGGTCTATAATGTC+AGG - chr1_1:49499633-49499652 None:intergenic 45.0%
! TGCAATGGGGGATTTTCTCA+AGG - chr1_1:49499736-49499755 None:intergenic 45.0%
GAGAAAATCCCCCATTGCAA+AGG + chr1_1:49499737-49499756 Msa0025860:CDS 45.0%
GTCAACATCCTTTGCAATGG+GGG - chr1_1:49499748-49499767 None:intergenic 45.0%
ACTGAAGCCTTGAGTGTACT+TGG - chr1_1:49499784-49499803 None:intergenic 45.0%
AAGTACACTCAAGGCTTCAG+TGG + chr1_1:49499783-49499802 Msa0025860:CDS 45.0%
AGGACATTGAGAGAGAAAGG+AGG + chr1_1:49499995-49500014 Msa0025860:intron 45.0%
CTCTTGACTGCTGCAAAGTT+TGG - chr1_1:49500164-49500183 None:intergenic 45.0%
CAAACTTTGCAGCAGTCAAG+AGG + chr1_1:49500162-49500181 Msa0025860:CDS 45.0%
CAGCACTTGCAGTTGCAAAA+GGG - chr1_1:49500251-49500270 None:intergenic 45.0%
!! TCAGCTTCTGGGACCATATA+TGG + chr1_1:49500479-49500498 Msa0025860:three_prime_UTR 45.0%
! TCTGGGACCATATATGGTCA+CGG + chr1_1:49500485-49500504 Msa0025860:three_prime_UTR 45.0%
AGAGAACCCGTGACCATATA+TGG - chr1_1:49500495-49500514 None:intergenic 45.0%
! ACGGGTTCTCTCAACTCTTT+TGG + chr1_1:49500504-49500523 Msa0025860:three_prime_UTR 45.0%
! CGGGTTCTCTCAACTCTTTT+GGG + chr1_1:49500505-49500524 Msa0025860:three_prime_UTR 45.0%
! GGGTTCTCTCAACTCTTTTG+GGG + chr1_1:49500506-49500525 Msa0025860:three_prime_UTR 45.0%
!! TTCAGGTTGGTTAGCCATGG+AGG - chr1_1:49496058-49496077 None:intergenic 50.0%
!! GGATTCAGGTTGGTTAGCCA+TGG - chr1_1:49496061-49496080 None:intergenic 50.0%
ACGAATCGGAGGATTCAGGT+TGG - chr1_1:49496071-49496090 None:intergenic 50.0%
GGAAGAGGATTACGAATCGG+AGG - chr1_1:49496082-49496101 None:intergenic 50.0%
CGATTTCAGTACGGCGATTC+TGG + chr1_1:49496206-49496225 Msa0025860:CDS 50.0%
TCATCAACGACGAGACGGTT+CGG - chr1_1:49496246-49496265 None:intergenic 50.0%
CAGCTTCATCAACGACGAGA+CGG - chr1_1:49496251-49496270 None:intergenic 50.0%
CGCACTTCATCCTGAAACCA+TGG + chr1_1:49496293-49496312 Msa0025860:CDS 50.0%
! CGTCTAGGGCTTGTTTGGAT+TGG - chr1_1:49497248-49497267 None:intergenic 50.0%
ATCCAAACAAGCCCTAGACG+AGG + chr1_1:49497248-49497267 Msa0025860:intron 50.0%
TAACTGGACGATATGCCTCG+AGG - chr1_1:49497679-49497698 None:intergenic 50.0%
TCGAGGCATATCGTCCAGTT+AGG + chr1_1:49497678-49497697 Msa0025860:CDS 50.0%
GGCATATCGTCCAGTTAGGA+AGG + chr1_1:49497682-49497701 Msa0025860:CDS 50.0%
GATGGCTCAGATTCGGGAAT+TGG + chr1_1:49497892-49497911 Msa0025860:CDS 50.0%
! GCCAGCTTTGACATGATCTC+AGG - chr1_1:49498073-49498092 None:intergenic 50.0%
GAGATCATGTCAAAGCTGGC+TGG + chr1_1:49498073-49498092 Msa0025860:CDS 50.0%
!! CTTCTCCCTCTTTGGAGCAA+TGG - chr1_1:49498182-49498201 None:intergenic 50.0%
ATCCATGAGGGTCAAGAGCT+GGG - chr1_1:49498236-49498255 None:intergenic 50.0%
AGCTCTTGACCCTCATGGAT+GGG + chr1_1:49498236-49498255 Msa0025860:CDS 50.0%
GGGATTTAAGCCCATCCATG+AGG - chr1_1:49498249-49498268 None:intergenic 50.0%
AGAGCAGGGTCGATGCTATT+GGG - chr1_1:49498307-49498326 None:intergenic 50.0%
AAGAGCAGGGTCGATGCTAT+TGG - chr1_1:49498308-49498327 None:intergenic 50.0%
!! ATAGCATCGACCCTGCTCTT+CGG + chr1_1:49498308-49498327 Msa0025860:CDS 50.0%
TTCCAAACCTCCGAAGAGCA+GGG - chr1_1:49498321-49498340 None:intergenic 50.0%
ACTGTTTCACGGAGAGCAGA+AGG - chr1_1:49498725-49498744 None:intergenic 50.0%
! TTGAAGTGCCCAATTGCAGC+TGG + chr1_1:49498880-49498899 Msa0025860:CDS 50.0%
! TGAAGTGCCCAATTGCAGCT+GGG + chr1_1:49498881-49498900 Msa0025860:CDS 50.0%
TGCAGCTGGGAAGATATTGG+TGG + chr1_1:49498894-49498913 Msa0025860:CDS 50.0%
TGTTAAGCGAGAACTCCAGG+AGG + chr1_1:49498926-49498945 Msa0025860:CDS 50.0%
CAAGAGCTTGAGTTACCTCC+TGG - chr1_1:49498944-49498963 None:intergenic 50.0%
GTTCTGTTCTATGGTCCTCC+TGG + chr1_1:49499097-49499116 Msa0025860:CDS 50.0%
TTCTATGGTCCTCCTGGTTG+TGG + chr1_1:49499103-49499122 Msa0025860:CDS 50.0%
! AGGGTTTTACCACAACCAGG+AGG - chr1_1:49499115-49499134 None:intergenic 50.0%
!! GGCAATAGCTTTGGCCAAGA+GGG - chr1_1:49499134-49499153 None:intergenic 50.0%
!! TGGCAATAGCTTTGGCCAAG+AGG - chr1_1:49499135-49499154 None:intergenic 50.0%
GTGTGCCTTATCTTGCAGAG+AGG + chr1_1:49499492-49499511 Msa0025860:intron 50.0%
GGTAGTAGTTCAGGAGATGC+TGG + chr1_1:49499513-49499532 Msa0025860:CDS 50.0%
AGTAGTTCAGGAGATGCTGG+TGG + chr1_1:49499516-49499535 Msa0025860:CDS 50.0%
TTATATCCCCCTTCCAGACG+AGG + chr1_1:49499683-49499702 Msa0025860:CDS 50.0%
GCTCTTGCCAAGTACACTCA+AGG + chr1_1:49499774-49499793 Msa0025860:CDS 50.0%
GTCCTGCCACAGAGAAGTTA+GGG - chr1_1:49499980-49499999 None:intergenic 50.0%
TGTCCTGCCACAGAGAAGTT+AGG - chr1_1:49499981-49500000 None:intergenic 50.0%
GGCAGGACATTGAGAGAGAA+AGG + chr1_1:49499992-49500011 Msa0025860:intron 50.0%
GCAAAGTTTGGGCAAAGGCT+TGG - chr1_1:49500152-49500171 None:intergenic 50.0%
CTGCTGCAAAGTTTGGGCAA+AGG - chr1_1:49500157-49500176 None:intergenic 50.0%
TTGCAGCAGTCAAGAGGGTT+TGG + chr1_1:49500168-49500187 Msa0025860:CDS 50.0%
AGATTTGCCGACAACAGTGC+TGG + chr1_1:49500201-49500220 Msa0025860:CDS 50.0%
CCAGCACTTGCAGTTGCAAA+AGG - chr1_1:49500252-49500271 None:intergenic 50.0%
! CCTTTTGCAACTGCAAGTGC+TGG + chr1_1:49500249-49500268 Msa0025860:CDS 50.0%
!! TTTGCAACTGCAAGTGCTGG+CGG + chr1_1:49500252-49500271 Msa0025860:CDS 50.0%
CTGGGACCATATATGGTCAC+GGG + chr1_1:49500486-49500505 Msa0025860:three_prime_UTR 50.0%
! AGCCTCGTCTAGGGCTTGTT+TGG - chr1_1:49497253-49497272 None:intergenic 55.0%
TTCTCATCCCCCCTCTCACA+AGG - chr1_1:49497718-49497737 None:intergenic 55.0%
GGCTCAGATTCGGGAATTGG+TGG + chr1_1:49497895-49497914 Msa0025860:CDS 55.0%
TTGTATGGACCCCCTGGATC+TGG + chr1_1:49497983-49498002 Msa0025860:CDS 55.0%
TTCCCAGCTCTTGACCCTCA+TGG + chr1_1:49498231-49498250 Msa0025860:CDS 55.0%
CATCCATGAGGGTCAAGAGC+TGG - chr1_1:49498237-49498256 None:intergenic 55.0%
CAGCTCTTGACCCTCATGGA+TGG + chr1_1:49498235-49498254 Msa0025860:CDS 55.0%
CTTCCAAACCTCCGAAGAGC+AGG - chr1_1:49498322-49498341 None:intergenic 55.0%
CTGCTCTTCGGAGGTTTGGA+AGG + chr1_1:49498320-49498339 Msa0025860:CDS 55.0%
GTCCCGAGCTACTCACAATG+TGG + chr1_1:49499188-49499207 Msa0025860:CDS 55.0%
GTCCAGGTCGTAGTAGAGCA+GGG - chr1_1:49499647-49499666 None:intergenic 55.0%
CTGCTCTACTACGACCTGGA+CGG + chr1_1:49499646-49499665 Msa0025860:CDS 55.0%
ATCAACTGATCCAGCCGTCC+AGG - chr1_1:49499663-49499682 None:intergenic 55.0%
TCGGGAATCCTCGTCTGGAA+GGG - chr1_1:49499694-49499713 None:intergenic 55.0%
TGATGTCGGGAATCCTCGTC+TGG - chr1_1:49499699-49499718 None:intergenic 55.0%
TAGCATACTTGCAAGCGCGC+TGG - chr1_1:49499830-49499849 None:intergenic 55.0%
CTCCCTAACTTCTCTGTGGC+AGG + chr1_1:49499975-49499994 Msa0025860:intron 55.0%
! TTTGCCGACAACAGTGCTGG+TGG + chr1_1:49500204-49500223 Msa0025860:CDS 55.0%
AGTGCCACCAGCACTGTTGT+CGG - chr1_1:49500211-49500230 None:intergenic 55.0%
TGCAAAAGGGTCAGCTGCAG+CGG - chr1_1:49500238-49500257 None:intergenic 55.0%
GAGAGGGGGGATGAGAAGTG+TGG + chr1_1:49497721-49497740 Msa0025860:CDS 60.0%
GACCCTGCTCTTCGGAGGTT+TGG + chr1_1:49498316-49498335 Msa0025860:CDS 60.0%
!! ATGCTGGTGGTGCTGCTGAC+AGG + chr1_1:49499529-49499548 Msa0025860:CDS 60.0%
!! TGCTGGTGGTGCTGCTGACA+GGG + chr1_1:49499530-49499549 Msa0025860:CDS 60.0%
GACCCTGCTCTACTACGACC+TGG + chr1_1:49499642-49499661 Msa0025860:CDS 60.0%
CGTCCAGGTCGTAGTAGAGC+AGG - chr1_1:49499648-49499667 None:intergenic 60.0%
TCTACTACGACCTGGACGGC+TGG + chr1_1:49499650-49499669 Msa0025860:CDS 60.0%
GGGAATCCTCGTCTGGAAGG+GGG - chr1_1:49499692-49499711 None:intergenic 60.0%
CGGGAATCCTCGTCTGGAAG+GGG - chr1_1:49499693-49499712 None:intergenic 60.0%
GTCGGGAATCCTCGTCTGGA+AGG - chr1_1:49499695-49499714 None:intergenic 60.0%
! GCATCGACCCTGCTCTTCGG+AGG + chr1_1:49498311-49498330 Msa0025860:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 49495930 49500667 49495930 ID=Msa0025860;Name=Msa0025860
chr1_1 mRNA 49495930 49500667 49495930 ID=Msa0025860-mRNA-1;Parent=Msa0025860;Name=Msa0025860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|1|1|9|365|810
chr1_1 exon 49495930 49496088 49495930 ID=Msa0025860-mRNA-1:exon:14249;Parent=Msa0025860-mRNA-1
chr1_1 exon 49496191 49496356 49496191 ID=Msa0025860-mRNA-1:exon:14250;Parent=Msa0025860-mRNA-1
chr1_1 exon 49496487 49496715 49496487 ID=Msa0025860-mRNA-1:exon:14251;Parent=Msa0025860-mRNA-1
chr1_1 exon 49497669 49498435 49497669 ID=Msa0025860-mRNA-1:exon:14252;Parent=Msa0025860-mRNA-1
chr1_1 exon 49498521 49498742 49498521 ID=Msa0025860-mRNA-1:exon:14253;Parent=Msa0025860-mRNA-1
chr1_1 exon 49498876 49498947 49498876 ID=Msa0025860-mRNA-1:exon:14254;Parent=Msa0025860-mRNA-1
chr1_1 exon 49499031 49499312 49499031 ID=Msa0025860-mRNA-1:exon:14255;Parent=Msa0025860-mRNA-1
chr1_1 exon 49499510 49499869 49499510 ID=Msa0025860-mRNA-1:exon:14256;Parent=Msa0025860-mRNA-1
chr1_1 exon 49499997 49500667 49499997 ID=Msa0025860-mRNA-1:exon:14257;Parent=Msa0025860-mRNA-1
chr1_1 five_prime_UTR 49495930 49496059 49495930 ID=Msa0025860-mRNA-1:five_prime_utr;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49496060 49496088 49496060 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49496191 49496356 49496191 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49496487 49496715 49496487 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49497669 49498435 49497669 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49498521 49498742 49498521 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49498876 49498947 49498876 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49499031 49499312 49499031 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49499510 49499869 49499510 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 CDS 49499997 49500302 49499997 ID=Msa0025860-mRNA-1:cds;Parent=Msa0025860-mRNA-1
chr1_1 three_prime_UTR 49500303 49500667 49500303 ID=Msa0025860-mRNA-1:three_prime_utr;Parent=Msa0025860-mRNA-1
Gene Sequence

>Msa0025860

ATGGCTAACCAACCTGAATCCTCCGATTCTAAGGGAACGAAGCGCGATTTCAGTACGGCGATTCTGGAACGCAAAAAGTCACCGAACCGTCTCGTCGTTGATGAAGCTGTCAACGATGACAACTCAGTTGTCGCACTTCATCCTGAAACCATGGAGAAACTTCAACTCTTTCGCGGTGATACAATTCTGATCAAGGGTAAGAAAAGAAAGGATACGATTTGTATTGCACTTGCTGATGAAACATGTGAAGAGCCAAAGATAAGAATGAATAAGGTTGTGAGAAACAATCTTAGGGTTAGACTTGGTGATGTTGTTTCTGTTCATCAATGTCCTGATGTCAAATATGGAAAGCGAGTTCATATTCTTCCTGTGGATGATACTATTGAAGGGGTTACTGGGAATCTCTTTGATGCTTACTTAAAACCTTATTTCCTCGAGGCATATCGTCCAGTTAGGAAGGGAGATATGTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAATTCAAGGTTATCGAGTGTGACCCTGCTGAGTATTGTGTTGTTGCACCTGACACTGAGATTTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGGATCGTTTAGATGAGGTTGGTTATGATGATGTTGGTGGTGTTAGAAAGCAGATGGCTCAGATTCGGGAATTGGTGGAACTGCCTTTGAGGCATCCACAATTATTCAAGTCTATTGGTGTGAAGCCACCAAAAGGGATTTTGTTGTATGGACCCCCTGGATCTGGTAAGACTTTAATTGCACGAGCTGTTGCAAATGAAACTGGTGCTTTCTTTTTCTGTATCAATGGTCCTGAGATCATGTCAAAGCTGGCTGGTGAGAGTGAAAGTAATCTGAGGAAGGCATTCGAAGAAGCTGAGAAGAATGCACCCTCAATCATCTTCATTGATGAGATAGACTCCATTGCTCCAAAGAGGGAGAAGACTAATGGTGAAGTTGAGCGAAGAATTGTTTCCCAGCTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCGCATGTAATTGTTATGGGAGCAACAAATCGTCCCAATAGCATCGACCCTGCTCTTCGGAGGTTTGGAAGGTTTGATCGGGAGATTGATATTGGTGTACCAGATGAAGTTGGACGTCTTGAGGTTCTCCGCATCCATACAAAAAATATGAAGCTTGCAGAAGATGTTGATTTAGAAAAGATTGCTAAGGAAACCCATGGTTATGTTGGTGCTGATTTAGCTGCTTTGTGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGATGTGATTGACCTAGAAGATGAAACCATTGATGCTGAGATACTTAACTCAATGGCGGTCACAAATGAACATTTCAGTACCGCACTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTTGTTGAAGTGCCCAATTGCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGCGAGAACTCCAGGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTGTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTCTTGGCCAAAGCTATTGCCAATGAATGTCAAGCAAACTTCATTAGTATCAAAGGTCCCGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGGGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTTCTTTTCTTTGATGAACTTGATTCTATTGCAACTCAGAGAGGTAGTAGTTCAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAATCAACTGCTTACAGAAATGGACGGAATGTCGGCAAAGAAAACTGTGTTTATCATTGGGGCCACTAATCGACCTGACATTATAGACCCTGCTCTACTACGACCTGGACGGCTGGATCAGTTGATTTATATCCCCCTTCCAGACGAGGATTCCCGACATCAGATATTCAAAGCTGCCTTGAGAAAATCCCCCATTGCAAAGGATGTTGACATCAGAGCTCTTGCCAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGCGCTTGCAAGTATGCTATAAGAGAAAACATCGAGAAGGACATTGAGAGAGAAAGGAGGAGAAGCGATAATCCTGAAGCTATGGAAGAGGATAATGAAGACGATGAGGTAGCTGAAATCAAAGCAGCACATTTTGAAGAATCGATGAAGTATGCACGAAGAAGTGTTAGTGACGCTGACATTCGCAAGTACCAAGCCTTTGCCCAAACTTTGCAGCAGTCAAGAGGGTTTGGATCTGAATTCAGATTTGCCGACAACAGTGCTGGTGGCACTACTGCCGCTGCAGCTGACCCTTTTGCAACTGCAAGTGCTGGCGGAGCTGATGAAGATGACCTCTACAGTTAG
Protein sequence

>Msa0025860

MANQPESSDSKGTKRDFSTAILERKKSPNRLVVDEAVNDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCVVAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAALRKSPIAKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSDNPEAMEEDNEDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFADNSAGGTTAAAADPFATASAGGADEDDLYS*