AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026620 MtrunA17_Chr1g0153441 98.037 968 19 0 1 968 1 968 0.0 1968
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026620 AT2G05170.1 76.778 956 196 6 1 954 1 932 0.0 1532

Find 251 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCACTGGTCTTGGGTTT+AGG 0.133976 1_1:-50472113 Msa0026620:CDS
AATCACTGGTCTTGGGTTTA+GGG 0.182284 1_1:-50472112 Msa0026620:CDS
CTTGATGAGCGAGCCATTCC+TGG 0.202754 1_1:+50467035 None:intergenic
GCGGATGTACTCAAATATTT+TGG 0.211743 1_1:-50470320 Msa0026620:CDS
CAGAGTTTGAAGGACAATTA+TGG 0.226264 1_1:+50470223 None:intergenic
GGTTCAATTTACTGCATAAA+AGG 0.236491 1_1:-50472207 Msa0026620:CDS
GATGAATCTGATTAATTTCC+GGG 0.239868 1_1:-50467131 Msa0026620:three_prime_UTR
TCTGAGGTTCTGAGAAAATA+TGG 0.241148 1_1:-50471466 Msa0026620:CDS
AGTTATAAGATAAATATTTA+AGG 0.243888 1_1:-50466876 Msa0026620:three_prime_UTR
CTTTCCTCAATCACTGGTCT+TGG 0.253805 1_1:-50472120 Msa0026620:CDS
TCTGTCATTGCTGAATATTT+TGG 0.257321 1_1:-50467308 Msa0026620:CDS
AGAAAAGTATCACTTCAATT+TGG 0.272835 1_1:+50466842 None:intergenic
GACAAATCAACTTTATCTAT+TGG 0.273921 1_1:-50471592 Msa0026620:CDS
CATTGCATGCTCATGGTAAT+TGG 0.275978 1_1:+50471138 None:intergenic
ACAAATCAACTTTATCTATT+GGG 0.277279 1_1:-50471591 Msa0026620:CDS
TCATCACCCTCATTCCCTTA+TGG 0.279998 1_1:-50470834 Msa0026620:CDS
ATCTATTGGGGAAAAGGATA+TGG 0.280398 1_1:-50471578 Msa0026620:CDS
GGATGAATCTGATTAATTTC+CGG 0.289826 1_1:-50467132 Msa0026620:three_prime_UTR
CCATCTTGTTCTTCTTCCTC+TGG 0.295883 1_1:+50473406 None:intergenic
CTGCAACTAAACGACAATTT+AGG 0.297889 1_1:+50473638 None:intergenic
CTTTGGAGTTCTTAACTTGC+TGG 0.300273 1_1:+50467339 None:intergenic
TCTAAGACAGACCTATATTC+TGG 0.301900 1_1:+50467410 None:intergenic
AGACTGGGTGATTCAGTTAA+AGG 0.309604 1_1:-50470362 Msa0026620:CDS
TGATCAAGGGTTTGCCTCCT+TGG 0.310759 1_1:+50472015 None:intergenic
CAGCAATAGTTCCATTGGTT+TGG 0.314895 1_1:+50470636 None:intergenic
CGTGAACAGGAGTTAATAAT+TGG 0.315708 1_1:-50471859 Msa0026620:intron
TAAATATTTAAGGCAATGTT+AGG 0.332104 1_1:-50466866 Msa0026620:three_prime_UTR
CTAAATTGTCGTTTAGTTGC+AGG 0.343394 1_1:-50473637 Msa0026620:five_prime_UTR
AGGTGAATCCTTGACCTTAT+TGG 0.343976 1_1:+50470793 None:intergenic
AGCAATAGTTCCATTGGTTT+GGG 0.348338 1_1:+50470637 None:intergenic
TATCACCCGTTTCAAGCTTC+AGG 0.352630 1_1:-50472166 Msa0026620:CDS
AAGGAGGGGATCCATCTCTT+TGG 0.360728 1_1:-50470343 Msa0026620:CDS
AGACAATTCAGATTCTCATT+AGG 0.370003 1_1:-50470949 Msa0026620:CDS
AGAGTTTGAAGGACAATTAT+GGG 0.373061 1_1:+50470224 None:intergenic
TTTCCTCAATCACTGGTCTT+GGG 0.374413 1_1:-50472119 Msa0026620:CDS
CCGAGTGTGCCCCAGAATAT+AGG 0.376144 1_1:-50467421 Msa0026620:CDS
GATTAATTGCCACAGTATAT+AGG 0.376809 1_1:+50471524 None:intergenic
AACTTTATCTATTGGGGAAA+AGG 0.376852 1_1:-50471584 Msa0026620:CDS
CGCAATATCCCAACACAATC+AGG 0.377225 1_1:+50472467 None:intergenic
CCTCACACTTTCAGTGATCA+AGG 0.379854 1_1:-50470186 Msa0026620:CDS
TTCTCATATGCTCTATGAAT+GGG 0.379887 1_1:-50471638 Msa0026620:CDS
TCATGATAGCTTCTCCTTGA+AGG 0.380546 1_1:-50466899 Msa0026620:three_prime_UTR
GAAAACAAGCTCACAGAACT+TGG 0.380752 1_1:+50472054 None:intergenic
CCAATAGCTATGAGTAGTAT+AGG 0.384546 1_1:+50472240 None:intergenic
CTACAACCTCACAAATTACT+TGG 0.388960 1_1:-50471329 Msa0026620:CDS
TTACCAGCAACGCAACTTCC+TGG 0.390746 1_1:-50472594 Msa0026620:intron
AAAAGTTGGTTTCTAAATGT+TGG 0.391120 1_1:-50467153 Msa0026620:three_prime_UTR
GGAAGGGGTAAAGTTGTAAC+TGG 0.392960 1_1:-50473331 Msa0026620:CDS
TCAGGCACAAAGCTGATTGC+TGG 0.394780 1_1:+50472540 None:intergenic
AAGATCTTGCTTGAAGATCT+TGG 0.395246 1_1:-50471076 Msa0026620:CDS
TTTATCTTATAACTCCTTCA+AGG 0.395675 1_1:+50466885 None:intergenic
TGAAAAGATGAAACTCTATA+AGG 0.401719 1_1:-50470444 Msa0026620:CDS
AGTGCACAGCAGGCAGGTCT+AGG 0.403112 1_1:+50467501 None:intergenic
CCTATACTACTCATAGCTAT+TGG 0.407396 1_1:-50472240 Msa0026620:CDS
AGGAGGGGATCCATCTCTTT+GGG 0.410282 1_1:-50470342 Msa0026620:CDS
TTGATGGACGTGGTCCTTGT+TGG 0.414039 1_1:-50471807 Msa0026620:CDS
CCTATATTCTGGGGCACACT+CGG 0.416345 1_1:+50467421 None:intergenic
GCTCAGTACATAAATACTAT+TGG 0.417530 1_1:-50471403 Msa0026620:CDS
TATCGCCAAGGCACCGCAAA+TGG 0.418739 1_1:+50467459 None:intergenic
TTAAAAGTGAAGACAGCATC+GGG 0.419487 1_1:-50471207 Msa0026620:CDS
AATGACAGAAAACCCATCTT+TGG 0.421553 1_1:+50467322 None:intergenic
GGAAAGAGGTTCAAGATCTT+AGG 0.422194 1_1:-50467574 Msa0026620:CDS
GAAAAGTTCCGAAAAGGAAA+AGG 0.428827 1_1:-50470609 Msa0026620:CDS
TCGACGTGGAAACAGCAATC+AGG 0.429305 1_1:-50471174 Msa0026620:CDS
TTAGAAGGATTTGAAGGTAC+TGG 0.430149 1_1:-50466954 Msa0026620:three_prime_UTR
CTGAGGTTCTGAGAAAATAT+GGG 0.432325 1_1:-50471465 Msa0026620:CDS
TCCACTTCGGATCTCAGATC+TGG 0.433777 1_1:-50467254 Msa0026620:CDS
GCTCAAATTGTTATTTGTCA+TGG 0.434682 1_1:+50466741 None:intergenic
GCAACTTCCTGGTAACGATT+GGG 0.436621 1_1:-50472583 Msa0026620:CDS
TTCCACCTGAAGCTTGAAAC+GGG 0.437573 1_1:+50472161 None:intergenic
AGAGCAAAATTCTAAGAGTC+AGG 0.439155 1_1:-50467372 Msa0026620:CDS
TCATTCCATTTGCGGTGCCT+TGG 0.440897 1_1:-50467464 Msa0026620:CDS
CTGATCAGCAATAGTTCCAT+TGG 0.444085 1_1:+50470631 None:intergenic
GGGATGACAATAAAGGAGTA+TGG 0.445490 1_1:-50471001 Msa0026620:CDS
CTCAAATTGTTATTTGTCAT+GGG 0.447325 1_1:+50466742 None:intergenic
AATTGCATGCTGCAAAAGAC+TGG 0.448531 1_1:-50470378 Msa0026620:CDS
CGCAACTTCCTGGTAACGAT+TGG 0.450703 1_1:-50472584 Msa0026620:CDS
CTAAGACAGACCTATATTCT+GGG 0.451299 1_1:+50467411 None:intergenic
TGGATATATACAACTCTAAG+AGG 0.457967 1_1:+50470747 None:intergenic
CGTCTTCCCCAATCGTTACC+AGG 0.459623 1_1:+50472576 None:intergenic
ACCCTTGATCAGATTGGATC+TGG 0.460259 1_1:-50472003 Msa0026620:CDS
TGATGGACGTGGTCCTTGTT+GGG 0.460881 1_1:-50471806 Msa0026620:CDS
CGCCAGATCCAATCTGATCA+AGG 0.461316 1_1:+50472001 None:intergenic
TGAAGGAAAGTTCAATTCGT+TGG 0.464411 1_1:+50470727 None:intergenic
GGTCAAGGATTCACCTGCTC+AGG 0.467389 1_1:-50470786 Msa0026620:CDS
TGGTAGTTATGAAGAGGCCT+TGG 0.468629 1_1:-50471056 Msa0026620:CDS
TTCTAGTCTTGAATCAAGTC+AGG 0.470104 1_1:-50471026 Msa0026620:CDS
CGGCGAGTCCTGATTGTGTT+GGG 0.472454 1_1:-50472475 Msa0026620:CDS
TTGTTAATCTCCACCTGAGC+AGG 0.474815 1_1:+50470773 None:intergenic
AAATGAATTCATTCAAAGAT+GGG 0.475672 1_1:-50470481 Msa0026620:CDS
GTTATTGCAGATCAAAGAAC+AGG 0.476400 1_1:-50471730 Msa0026620:CDS
GCATGCACTCATTCCATTTG+CGG 0.477204 1_1:-50467472 Msa0026620:CDS
AGGCAAACCCTTGATCAGAT+TGG 0.477845 1_1:-50472009 Msa0026620:CDS
CAAGTTAAGAACTCCAAAGA+TGG 0.478433 1_1:-50467335 Msa0026620:CDS
TCGAGTGTTGTTCGAGTGGA+AGG 0.478736 1_1:-50473348 Msa0026620:CDS
ACGATAACAAGCCGTACTAA+TGG 0.479354 1_1:+50467096 None:intergenic
TTGCAGGCAGCTTCTTCCAA+TGG 0.481144 1_1:-50473621 Msa0026620:five_prime_UTR
TCAGGCAGGGATGACAATAA+AGG 0.481244 1_1:-50471008 Msa0026620:CDS
TTTCTCATATGCTCTATGAA+TGG 0.483651 1_1:-50471639 Msa0026620:CDS
GAAATGAATTCATTCAAAGA+TGG 0.484480 1_1:-50470482 Msa0026620:CDS
CCGTCTTGAAAGGCGTGAAA+AGG 0.484924 1_1:-50470585 Msa0026620:CDS
CAGGCACAAAGCTGATTGCT+GGG 0.486277 1_1:+50472541 None:intergenic
GAGAAAAGAAATTGGTAGGA+TGG 0.487649 1_1:-50471774 Msa0026620:CDS
TCAAGGGTTTGCCTCCTTGG+TGG 0.489921 1_1:+50472018 None:intergenic
CATTGCTCGGAAGCTTGAGC+AGG 0.494654 1_1:-50470159 Msa0026620:CDS
TTTAATAGCCCACAGTGCTC+TGG 0.496214 1_1:-50471671 Msa0026620:CDS
TCGCGGCGGCGATGTATCAA+TGG 0.496274 1_1:-50473477 Msa0026620:exon
ATGCACATGAAGTGCACAGC+AGG 0.497823 1_1:+50467491 None:intergenic
TTTCAACTTCTCCATTAGTA+CGG 0.499735 1_1:-50467107 Msa0026620:three_prime_UTR
AAAATGCTGAGAAAATCAAC+AGG 0.501120 1_1:+50470860 None:intergenic
TTTCCACCTGAAGCTTGAAA+CGG 0.502073 1_1:+50472160 None:intergenic
TTCAGTATCACAGTCTAATG+AGG 0.507019 1_1:-50470708 Msa0026620:CDS
GCTAAATCAACATCATAAAG+TGG 0.508250 1_1:+50470518 None:intergenic
ATAGCTATTGGCTTGGACAA+TGG 0.511476 1_1:-50472228 Msa0026620:CDS
AGAAAATCCATAAGGGAATG+AGG 0.512488 1_1:+50470827 None:intergenic
CTATATTCTGGGGCACACTC+GGG 0.512624 1_1:+50467422 None:intergenic
GATCTGCAATAACACACAAA+AGG 0.515758 1_1:+50471740 None:intergenic
AGTAATCGCTTGCTATATGC+AGG 0.516062 1_1:-50470420 Msa0026620:CDS
ACCGTTTGCTTCTTCGATCG+AGG 0.516521 1_1:-50473295 Msa0026620:CDS
CTTGGAAAAGCTACATGAGA+AGG 0.516604 1_1:-50471311 Msa0026620:CDS
TGCAATGTATGTTGCAAAGA+AGG 0.517375 1_1:-50471122 Msa0026620:CDS
GAGGGAGAAAAGAAATTGGT+AGG 0.517648 1_1:-50471778 Msa0026620:CDS
TCTCTTTATTCAACAACTCA+AGG 0.517822 1_1:-50473230 Msa0026620:intron
ATGTATGTTGCAAAGAAGGC+TGG 0.518614 1_1:-50471118 Msa0026620:CDS
GACAAAAGAGGACGTTCAAA+TGG 0.519441 1_1:-50470908 Msa0026620:CDS
TCACTGAAAGTGTGAGGCAA+GGG 0.519511 1_1:+50470192 None:intergenic
CAAATCAACTTTATCTATTG+GGG 0.520833 1_1:-50471590 Msa0026620:CDS
TTAGAAGTGTAATATTATGA+CGG 0.523614 1_1:-50466809 Msa0026620:three_prime_UTR
TGATCAGAAAAGTTCCGAAA+AGG 0.523848 1_1:-50470615 Msa0026620:CDS
CAACATACATTGCATGCTCA+TGG 0.524740 1_1:+50471131 None:intergenic
TGAAAGAGAAAGAGAAGGAG+AGG 0.526239 1_1:-50473375 Msa0026620:CDS
ATCTTTAACCAGAGCACTGT+GGG 0.529432 1_1:+50471663 None:intergenic
AAACCCAAGACCAGTGATTG+AGG 0.533139 1_1:+50472116 None:intergenic
AGTCTTGAATCAAGTCAGGC+AGG 0.533537 1_1:-50471022 Msa0026620:CDS
CGACGTGGAAACAGCAATCA+GGG 0.533602 1_1:-50471173 Msa0026620:CDS
ATTATCAGCAAAACAAGCAA+TGG 0.533785 1_1:-50467278 Msa0026620:CDS
GCAATCAGCTTTGTGCCTGA+AGG 0.534105 1_1:-50472537 Msa0026620:CDS
AAAACTCTTTCCTCAATCAC+TGG 0.534770 1_1:-50472126 Msa0026620:CDS
AAAAGTTCCGAAAAGGAAAA+GGG 0.535509 1_1:-50470608 Msa0026620:CDS
TTGATGAGCGAGCCATTCCT+GGG 0.536043 1_1:+50467036 None:intergenic
AAAATAAGTGCCCAAACCAA+TGG 0.537419 1_1:-50470647 Msa0026620:CDS
CAAGGATTCACCTGCTCAGG+TGG 0.538482 1_1:-50470783 Msa0026620:CDS
AAAACAAGCTCACAGAACTT+GGG 0.538497 1_1:+50472055 None:intergenic
CATTAGGCTTTGCACAGACG+AGG 0.539579 1_1:-50470933 Msa0026620:CDS
AGTACATCCGCCCAAAGAGA+TGG 0.540263 1_1:+50470332 None:intergenic
AGGAAAAGGGCCGTCTTGAA+AGG 0.540276 1_1:-50470595 Msa0026620:CDS
CTGAGAAAATCAACAGGAGA+TGG 0.541673 1_1:+50470866 None:intergenic
AGTGTCATTACCATTGCCTC+AGG 0.543487 1_1:+50472425 None:intergenic
ACGGCGAGTCCTGATTGTGT+TGG 0.543998 1_1:-50472476 Msa0026620:CDS
CGTCTTGAAAGGCGTGAAAA+GGG 0.546551 1_1:-50470584 Msa0026620:CDS
AAGTTAAGAACTCCAAAGAT+GGG 0.547474 1_1:-50467334 Msa0026620:CDS
GCGGAAGTTCGAATTCTTCG+AGG 0.550459 1_1:-50473455 Msa0026620:CDS
GCAGGAATCAAAGGTGATTG+AGG 0.554065 1_1:-50470141 Msa0026620:CDS
AAGAGAACAGAAGAAGAATG+AGG 0.556997 1_1:+50473247 None:intergenic
GTGCACAGCAGGCAGGTCTA+GGG 0.558000 1_1:+50467502 None:intergenic
GGTCTTGGGTTTAGGGTGGA+CGG 0.558064 1_1:-50472105 Msa0026620:CDS
TAATCAGTTTCCTGAGGCAA+TGG 0.558713 1_1:-50472435 Msa0026620:intron
ACTACTCATAGCTATTGGCT+TGG 0.559612 1_1:-50472235 Msa0026620:CDS
GAGTGTTGTTCGAGTGGAAG+GGG 0.560346 1_1:-50473346 Msa0026620:CDS
AGAATCTGAATTGTCTCCGA+TGG 0.561215 1_1:+50470956 None:intergenic
GAAAATCCATAAGGGAATGA+GGG 0.566341 1_1:+50470828 None:intergenic
TACACATGCTTAAGAGTGCA+TGG 0.567883 1_1:-50470559 Msa0026620:CDS
CACTGGTCTTGGGTTTAGGG+TGG 0.569621 1_1:-50472109 Msa0026620:CDS
AGAAGGCTGGGAGACATGAA+TGG 0.570653 1_1:-50471105 Msa0026620:CDS
ATTAAAAGTGAAGACAGCAT+CGG 0.571136 1_1:-50471208 Msa0026620:CDS
AAAATTCTAAGAGTCAGGAC+AGG 0.572111 1_1:-50467367 Msa0026620:CDS
GAAGCTTGAGCAGGAATCAA+AGG 0.573976 1_1:-50470150 Msa0026620:CDS
CAACGTGAAAGAGAAAGAGA+AGG 0.574262 1_1:-50473380 Msa0026620:CDS
TGATCAAGGATTACATTGCT+CGG 0.575906 1_1:-50470172 Msa0026620:CDS
AAGACTAGAAATATATTCCA+AGG 0.575970 1_1:+50471039 None:intergenic
TCATCTAGCAGTAGCTTCTG+AGG 0.576618 1_1:-50467224 Msa0026620:exon
ATCACTGAAAGTGTGAGGCA+AGG 0.582038 1_1:+50470191 None:intergenic
GGATTTAAATCATGCAGATG+AGG 0.582596 1_1:-50466788 Msa0026620:three_prime_UTR
GGAGCGAAAAGCTGAAAGGA+AGG 0.586980 1_1:+50467187 None:intergenic
CACCCGTTTCAAGCTTCAGG+TGG 0.587503 1_1:-50472163 Msa0026620:CDS
TGTATGTTGCAAAGAAGGCT+GGG 0.587852 1_1:-50471117 Msa0026620:CDS
GTCTTGAATCAAGTCAGGCA+GGG 0.589046 1_1:-50471021 Msa0026620:CDS
ACATGAAGTGCACAGCAGGC+AGG 0.590221 1_1:+50467495 None:intergenic
AAAATATACCAATAAGGTCA+AGG 0.592033 1_1:-50470801 Msa0026620:CDS
TCCTCGATCGAAGAAGCAAA+CGG 0.594689 1_1:+50473294 None:intergenic
CACACAGGCAATGAGGAAAG+AGG 0.596991 1_1:-50467588 Msa0026620:CDS
TCTCCCTCAAAAGCCCAACA+AGG 0.597238 1_1:+50471793 None:intergenic
CAACTTCCTGGTAACGATTG+GGG 0.597577 1_1:-50472582 Msa0026620:CDS
GCGATTCACAATCGATCGAT+CGG 0.597885 1_1:+50473496 None:intergenic
TATGCAGGCGCATGATCACA+AGG 0.597985 1_1:-50470405 Msa0026620:CDS
AGATCTTGGTAGTTATGAAG+AGG 0.598131 1_1:-50471062 Msa0026620:CDS
TTGGAAAAGCTACATGAGAA+GGG 0.599303 1_1:-50471310 Msa0026620:CDS
ATTTACAACGTGATCGATCG+AGG 0.599460 1_1:+50473581 None:intergenic
GCAAGACTATGATGAGGCAA+TGG 0.600642 1_1:-50471425 Msa0026620:CDS
GAGTTTGAAGGACAATTATG+GGG 0.601929 1_1:+50470225 None:intergenic
TCCAGATCTGAGATCCGAAG+TGG 0.602743 1_1:+50467253 None:intergenic
AGTGGATGTTCTGTCTCTGA+AGG 0.602934 1_1:+50470536 None:intergenic
TTATATATATCACCCAGGAA+TGG 0.603664 1_1:-50467048 Msa0026620:three_prime_UTR
CGAGTGTTGTTCGAGTGGAA+GGG 0.604908 1_1:-50473347 Msa0026620:CDS
GCATAAAAGGAGATATTGCA+CGG 0.607070 1_1:-50472194 Msa0026620:CDS
TGGGTGATTCAGTTAAAGGA+GGG 0.607280 1_1:-50470358 Msa0026620:CDS
AACAAGCAATGGATCCACTT+CGG 0.607760 1_1:-50467267 Msa0026620:CDS
AAATTGGTAGGATGGTTTCG+TGG 0.608218 1_1:-50471766 Msa0026620:CDS
GCCAGATCCAATCTGATCAA+GGG 0.609973 1_1:+50472002 None:intergenic
TATATTCTGGGGCACACTCG+GGG 0.610780 1_1:+50467423 None:intergenic
TCTAATAGAGCACAAGCCAT+CGG 0.612609 1_1:-50470972 Msa0026620:CDS
CTGGGTGATTCAGTTAAAGG+AGG 0.613053 1_1:-50470359 Msa0026620:CDS
ATTTGAAGGTACTGGTTGTG+TGG 0.613346 1_1:-50466946 Msa0026620:three_prime_UTR
AAAATCGAGTGTTGTTCGAG+TGG 0.614642 1_1:-50473352 Msa0026620:CDS
ACAGACGAGGGTGACAAAAG+AGG 0.616703 1_1:-50470920 Msa0026620:CDS
AGATGCTGCGGCTACTTCTG+AGG 0.616834 1_1:-50471482 Msa0026620:CDS
GCTCATGGTAATTGGCAGAA+CGG 0.620726 1_1:+50471146 None:intergenic
GACTCAACAAGCAGATGCTG+CGG 0.622452 1_1:-50471494 Msa0026620:CDS
TAATGGAGAAGTTGAAAACC+CGG 0.622700 1_1:+50467113 None:intergenic
CTCTGTGCAGGAAGACACAC+AGG 0.626890 1_1:-50467603 Msa0026620:intron
TCATTAGACTGTGATACTGA+AGG 0.629024 1_1:+50470710 None:intergenic
GTTAATAATTGGTCGACCAG+AGG 0.633039 1_1:-50471848 Msa0026620:CDS
TCAGTATCACAGTCTAATGA+GGG 0.633103 1_1:-50470707 Msa0026620:CDS
TGCAAAATGCACAATTCCAG+AGG 0.634341 1_1:-50473422 Msa0026620:CDS
TAAGACAGACCTATATTCTG+GGG 0.635945 1_1:+50467412 None:intergenic
CCAGAGGAAGAAGAACAAGA+TGG 0.637391 1_1:-50473406 Msa0026620:CDS
AACATGTAAACTCAAGAACA+TGG 0.638417 1_1:+50467069 None:intergenic
AGTTTGAAGGACAATTATGG+GGG 0.640269 1_1:+50470226 None:intergenic
ATAGCTATGAGTAGTATAGG+AGG 0.640361 1_1:+50472243 None:intergenic
CCTTGATCACTGAAAGTGTG+AGG 0.642300 1_1:+50470186 None:intergenic
AGGCACAAAGCTGATTGCTG+GGG 0.643663 1_1:+50472542 None:intergenic
GGATGGAGCGAAAAGCTGAA+AGG 0.645330 1_1:+50467183 None:intergenic
TGAGGTTCTGAGAAAATATG+GGG 0.647630 1_1:-50471464 Msa0026620:CDS
GGATATATACAACTCTAAGA+GGG 0.651731 1_1:+50470748 None:intergenic
TCTCATATGCTCTATGAATG+GGG 0.652495 1_1:-50471637 Msa0026620:CDS
GCAATCTGAAAGTACGAGCA+CGG 0.655504 1_1:-50472495 Msa0026620:CDS
CATTGCATGATCAACCACCA+AGG 0.657468 1_1:-50472032 Msa0026620:CDS
GAGCGAAAAGCTGAAAGGAA+GGG 0.657629 1_1:+50467188 None:intergenic
AGGAAGACACACAGGCAATG+AGG 0.657761 1_1:-50467595 Msa0026620:CDS
CATAAAAGGAGATATTGCAC+GGG 0.659347 1_1:-50472193 Msa0026620:CDS
GGAATCAAAGGTGATTGAGG+AGG 0.659787 1_1:-50470138 Msa0026620:CDS
ACATGTTATATATATCACCC+AGG 0.660615 1_1:-50467053 Msa0026620:three_prime_UTR
ATTAGGCTTTGCACAGACGA+GGG 0.662527 1_1:-50470932 Msa0026620:CDS
ATTCACTAATCAGTTTCCTG+AGG 0.669474 1_1:-50472441 Msa0026620:CDS
AAACAAGCTCACAGAACTTG+GGG 0.672747 1_1:+50472056 None:intergenic
ATTGCATGCTGCAAAAGACT+GGG 0.673354 1_1:-50470377 Msa0026620:CDS
CGGCGGCGATGTATCAATGG+CGG 0.677407 1_1:-50473474 Msa0026620:exon
CGGGGAACTTAAGTTCGACG+TGG 0.678311 1_1:-50471188 Msa0026620:CDS
AGGGGATCCATCTCTTTGGG+CGG 0.679575 1_1:-50470339 Msa0026620:CDS
CAGCAAGCAAGACTATGATG+AGG 0.681320 1_1:-50471431 Msa0026620:CDS
ATGCAGGCGCATGATCACAA+GGG 0.688495 1_1:-50470404 Msa0026620:CDS
GATCGATCGATTGTGAATCG+CGG 0.691976 1_1:-50473494 Msa0026620:five_prime_UTR
GGGTGATTCAGTTAAAGGAG+GGG 0.693595 1_1:-50470357 Msa0026620:CDS
CATCTTTAACCAGAGCACTG+TGG 0.696661 1_1:+50471662 None:intergenic
GTGATGAGTGAAGAAGCCAT+TGG 0.698495 1_1:+50473605 None:intergenic
GTTTGAAGGACAATTATGGG+GGG 0.705881 1_1:+50470227 None:intergenic
AAGATCTTAGGACAAATGCG+AGG 0.706313 1_1:-50467562 Msa0026620:CDS
GTAACAGTTCAATAGAAGTG+TGG 0.715654 1_1:+50471267 None:intergenic
CGATCGATTGTGAATCGCGG+CGG 0.717706 1_1:-50473491 Msa0026620:five_prime_UTR
TGCATGATCAACCACCAAGG+AGG 0.719899 1_1:-50472029 Msa0026620:CDS
TAAAAGTGAAGACAGCATCG+GGG 0.751960 1_1:-50471206 Msa0026620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTCAATTATGTATTT+TGG - chr1_1:50467218-50467237 Msa0026620:exon 10.0%
!!! TTTATTCAATTATGTATTTT+GGG - chr1_1:50467219-50467238 Msa0026620:exon 10.0%
!! AATATTTCTTAATATCATTA+TGG - chr1_1:50472054-50472073 Msa0026620:CDS 10.0%
!! AGTTATAAGATAAATATTTA+AGG - chr1_1:50473529-50473548 Msa0026620:five_prime_UTR 10.0%
!! TACATAATTGAATAAATTGA+AGG + chr1_1:50467215-50467234 None:intergenic 15.0%
!! TTATAAAAATAAGTAATGCT+AGG + chr1_1:50471701-50471720 None:intergenic 15.0%
!! AAATACAAATTATAAACATG+CGG + chr1_1:50472499-50472518 None:intergenic 15.0%
!!! GTTTATAATTTGTATTTGTA+TGG - chr1_1:50472502-50472521 Msa0026620:CDS 15.0%
!!! TTGTAAAGTTTGTTCTTTTT+TGG - chr1_1:50467244-50467263 Msa0026620:CDS 20.0%
!!! AGATTTTTAGGATTGAAATT+AGG - chr1_1:50467287-50467306 Msa0026620:CDS 20.0%
!! TGAAGAACTTATGAAAAAAA+AGG + chr1_1:50467533-50467552 None:intergenic 20.0%
!!! TTTCTTTTTAACCAACATAT+AGG + chr1_1:50467727-50467746 None:intergenic 20.0%
!! TTAGAGAAATTATATCTGTA+TGG - chr1_1:50468030-50468049 Msa0026620:intron 20.0%
!! AAATTATATCTGTATGGTAA+TGG - chr1_1:50468036-50468055 Msa0026620:intron 20.0%
!!! TTTTAATGATTTTGGAATTG+TGG - chr1_1:50468099-50468118 Msa0026620:intron 20.0%
!! ATAAAAATATATTGAGAGCA+AGG + chr1_1:50468475-50468494 None:intergenic 20.0%
!!! GTATATTTTTATGAAGTTGA+TGG - chr1_1:50468582-50468601 Msa0026620:intron 20.0%
!! ACAAATCAACTTTATCTATT+GGG - chr1_1:50468814-50468833 Msa0026620:intron 20.0%
!!! TTATGTGATACAAAAGTTTT+TGG - chr1_1:50469040-50469059 Msa0026620:intron 20.0%
!!! TTTTTCAACATCTTTCAATT+TGG + chr1_1:50469165-50469184 None:intergenic 20.0%
!!! TTTTTCAAGAAAATCCATAA+GGG + chr1_1:50469588-50469607 None:intergenic 20.0%
!!! ATTTTTCAAGAAAATCCATA+AGG + chr1_1:50469589-50469608 None:intergenic 20.0%
!! TCTTGAAAAATATACCAATA+AGG - chr1_1:50469598-50469617 Msa0026620:intron 20.0%
!! AAATGAATTCATTCAAAGAT+GGG - chr1_1:50469924-50469943 Msa0026620:intron 20.0%
!!! AAGTTTTGAATTACATTGAA+AGG - chr1_1:50470143-50470162 Msa0026620:CDS 20.0%
!!! AGTTTTGAATTACATTGAAA+GGG - chr1_1:50470144-50470163 Msa0026620:CDS 20.0%
!! AATATTAGGAAATGAGAAAA+CGG + chr1_1:50470415-50470434 None:intergenic 20.0%
!!! TTTTAGGAATTTACAAACAA+TGG - chr1_1:50470608-50470627 Msa0026620:CDS 20.0%
!! GATACAATGTTAAAAATGTA+TGG + chr1_1:50471330-50471349 None:intergenic 20.0%
!! AGTCATTTATGTACTAAAAA+AGG + chr1_1:50471847-50471866 None:intergenic 20.0%
!!! ATATTAGTTTACAGTATCAT+AGG - chr1_1:50472083-50472102 Msa0026620:CDS 20.0%
!! AATAAGGAGGAAAAAAAAAA+TGG + chr1_1:50472129-50472148 None:intergenic 20.0%
!!! TTTTTCCTCCTTATTTAATT+AGG - chr1_1:50472134-50472153 Msa0026620:CDS 20.0%
!! TAAATCCTAATTAAATAAGG+AGG + chr1_1:50472142-50472161 None:intergenic 20.0%
!! CTCTAAATCCTAATTAAATA+AGG + chr1_1:50472145-50472164 None:intergenic 20.0%
!! GATTTGTATATACAAAAGAT+TGG - chr1_1:50472594-50472613 Msa0026620:intron 20.0%
!!! TTCTAAAAAATTTGATACTC+CGG + chr1_1:50473437-50473456 None:intergenic 20.0%
!!! AATTTTTTAGAAGGATTTGA+AGG - chr1_1:50473445-50473464 Msa0026620:CDS 20.0%
!!! TAAATATTTAAGGCAATGTT+AGG - chr1_1:50473539-50473558 Msa0026620:five_prime_UTR 20.0%
!!! TTAGAAGTGTAATATTATGA+CGG - chr1_1:50473596-50473615 Msa0026620:five_prime_UTR 20.0%
!! TGCTTGATGAATAGATTTTT+AGG - chr1_1:50467275-50467294 Msa0026620:CDS 25.0%
! AGTAAACAACATATGAACAA+TGG + chr1_1:50467503-50467522 None:intergenic 25.0%
! TTGGATTAACAACTTATTTG+CGG + chr1_1:50467660-50467679 None:intergenic 25.0%
! AATAAGTTGTTAATCCAAAC+AGG - chr1_1:50467662-50467681 Msa0026620:intron 25.0%
! ATAAGTTGTTAATCCAAACA+GGG - chr1_1:50467663-50467682 Msa0026620:intron 25.0%
! GTTGGTTAAAAAGAAAAGAT+TGG - chr1_1:50467731-50467750 Msa0026620:intron 25.0%
!! CTCTAAAGATAAAGAGTAAA+AGG + chr1_1:50468016-50468035 None:intergenic 25.0%
! CCAAAATCATTAAAAAAGCT+TGG + chr1_1:50468094-50468113 None:intergenic 25.0%
!!! CCAAGCTTTTTTAATGATTT+TGG - chr1_1:50468091-50468110 Msa0026620:intron 25.0%
!! TACATCTTTTATTGTCTTAG+AGG - chr1_1:50468134-50468153 Msa0026620:intron 25.0%
! GACAAATCAACTTTATCTAT+TGG - chr1_1:50468813-50468832 Msa0026620:intron 25.0%
! CAAATCAACTTTATCTATTG+GGG - chr1_1:50468815-50468834 Msa0026620:intron 25.0%
!! AACTTTTGTATCACATAAGA+AGG + chr1_1:50469038-50469057 None:intergenic 25.0%
! AAGACTAGAAATATATTCCA+AGG + chr1_1:50469369-50469388 None:intergenic 25.0%
! AAAATATACCAATAAGGTCA+AGG - chr1_1:50469604-50469623 Msa0026620:intron 25.0%
! GAAATGAATTCATTCAAAGA+TGG - chr1_1:50469923-50469942 Msa0026620:intron 25.0%
! TGAAAAGATGAAACTCTATA+AGG - chr1_1:50469961-50469980 Msa0026620:intron 25.0%
!! CAAAACTTCTTTTACTTCTT+TGG + chr1_1:50470131-50470150 None:intergenic 25.0%
!!! GATATTTTTCAATAGCTTGT+CGG + chr1_1:50470294-50470313 None:intergenic 25.0%
! ACAAGCTATTGAAAAATATC+AGG - chr1_1:50470294-50470313 Msa0026620:CDS 25.0%
! CATAATGTGACAACAATATT+AGG + chr1_1:50470429-50470448 None:intergenic 25.0%
!!! TTCTAATGGATGTTTTTTGT+AGG + chr1_1:50470685-50470704 None:intergenic 25.0%
! ATCAATACTAGTGCAATTAA+TGG + chr1_1:50470791-50470810 None:intergenic 25.0%
!!! AAGTTTGTTTTCTGTTAGTT+AGG - chr1_1:50470978-50470997 Msa0026620:CDS 25.0%
!! CAAATATGAGAAAATGGTTT+TGG + chr1_1:50471091-50471110 None:intergenic 25.0%
! TGAACACAAATATGAGAAAA+TGG + chr1_1:50471097-50471116 None:intergenic 25.0%
! ATGAATGATCCAAAAACATA+TGG - chr1_1:50471228-50471247 Msa0026620:CDS 25.0%
! TCTTCAACATTTATCAATGT+TGG - chr1_1:50471257-50471276 Msa0026620:CDS 25.0%
! CTTCAACATTTATCAATGTT+GGG - chr1_1:50471258-50471277 Msa0026620:CDS 25.0%
!! GTATTTTCTATTTCACATAG+TGG - chr1_1:50471917-50471936 Msa0026620:intron 25.0%
!!! TATTTCACATAGTGGATTTT+TGG - chr1_1:50471925-50471944 Msa0026620:intron 25.0%
! GAAAAATGTACTATATGTGA+TGG + chr1_1:50472221-50472240 None:intergenic 25.0%
! ATTAAATATGAGCAGGAATT+TGG - chr1_1:50472285-50472304 Msa0026620:intron 25.0%
! TTGTGCTATAATATCTGTTA+CGG - chr1_1:50472445-50472464 Msa0026620:CDS 25.0%
! TGCTTTATAACATATTGTGA+TGG + chr1_1:50472474-50472493 None:intergenic 25.0%
!!! TATTTTTTCTGTAAACAGCA+CGG - chr1_1:50472755-50472774 Msa0026620:intron 25.0%
!!! ATTGCTGAATATTTTGGAAA+AGG - chr1_1:50473103-50473122 Msa0026620:intron 25.0%
!!! TTGCTGAATATTTTGGAAAA+GGG - chr1_1:50473104-50473123 Msa0026620:intron 25.0%
!!! AGAAACCAACTTTTTAGTAT+TGG + chr1_1:50473246-50473265 None:intergenic 25.0%
!! AAAAGTTGGTTTCTAAATGT+TGG - chr1_1:50473252-50473271 Msa0026620:CDS 25.0%
!!! GGAGTATCAAATTTTTTAGA+AGG - chr1_1:50473436-50473455 Msa0026620:CDS 25.0%
! TTTATCTTATAACTCCTTCA+AGG + chr1_1:50473523-50473542 None:intergenic 25.0%
!!! AGAAAAGTATCACTTCAATT+TGG + chr1_1:50473566-50473585 None:intergenic 25.0%
!!! CTCAAATTGTTATTTGTCAT+GGG + chr1_1:50473666-50473685 None:intergenic 25.0%
ATTCGATCAAAAAAATGCGA+AGG + chr1_1:50466876-50466895 None:intergenic 30.0%
TCTCTTTATTCAACAACTCA+AGG - chr1_1:50467175-50467194 Msa0026620:three_prime_UTR 30.0%
AATTAGGTAGTTGTAGAAAG+TGG - chr1_1:50467303-50467322 Msa0026620:CDS 30.0%
TAAGTTGTTAATCCAAACAG+GGG - chr1_1:50467664-50467683 Msa0026620:intron 30.0%
TATCTAAGTCAAAAACCTTC+AGG + chr1_1:50467886-50467905 None:intergenic 30.0%
GGTTCAATTTACTGCATAAA+AGG - chr1_1:50468198-50468217 Msa0026620:intron 30.0%
TCATAAAAATATACTGCCTC+TGG + chr1_1:50468576-50468595 None:intergenic 30.0%
!! TTTTGAGGGAGAAAAGAAAT+TGG - chr1_1:50468623-50468642 Msa0026620:intron 30.0%
TTTCTCATATGCTCTATGAA+TGG - chr1_1:50468766-50468785 Msa0026620:intron 30.0%
TTCTCATATGCTCTATGAAT+GGG - chr1_1:50468767-50468786 Msa0026620:intron 30.0%
AACTTTATCTATTGGGGAAA+AGG - chr1_1:50468821-50468840 Msa0026620:intron 30.0%
CAAGAAAAACCTATATACTG+TGG - chr1_1:50468872-50468891 Msa0026620:intron 30.0%
GATTAATTGCCACAGTATAT+AGG + chr1_1:50468884-50468903 None:intergenic 30.0%
GCTCAGTACATAAATACTAT+TGG - chr1_1:50469002-50469021 Msa0026620:intron 30.0%
ATTAAAAGTGAAGACAGCAT+CGG - chr1_1:50469197-50469216 Msa0026620:intron 30.0%
AGACAATTCAGATTCTCATT+AGG - chr1_1:50469456-50469475 Msa0026620:intron 30.0%
AAAATGCTGAGAAAATCAAC+AGG + chr1_1:50469548-50469567 None:intergenic 30.0%
! GGATATATACAACTCTAAGA+GGG + chr1_1:50469660-50469679 None:intergenic 30.0%
TGGATATATACAACTCTAAG+AGG + chr1_1:50469661-50469680 None:intergenic 30.0%
!!! TTTTTTCTGATGCTACGTTA+AGG + chr1_1:50469733-50469752 None:intergenic 30.0%
AAAAGTTCCGAAAAGGAAAA+GGG - chr1_1:50469797-50469816 Msa0026620:intron 30.0%
GCTAAATCAACATCATAAAG+TGG + chr1_1:50469890-50469909 None:intergenic 30.0%
AGAGTTTGAAGGACAATTAT+GGG + chr1_1:50470184-50470203 None:intergenic 30.0%
GCTATTGAAAAATATCAGGT+TGG - chr1_1:50470298-50470317 Msa0026620:CDS 30.0%
! GCTGAAGTTGTTTACATTTT+AGG - chr1_1:50470592-50470611 Msa0026620:CDS 30.0%
ATTTACAAACAATGGACCTA+TGG - chr1_1:50470616-50470635 Msa0026620:CDS 30.0%
AAAAAACATCCATTAGAAGC+AGG - chr1_1:50470687-50470706 Msa0026620:CDS 30.0%
!! CTAGTATTGATAGTAACACA+AGG - chr1_1:50470800-50470819 Msa0026620:CDS 30.0%
TGATAGTAACACAAGGATAT+TGG - chr1_1:50470807-50470826 Msa0026620:CDS 30.0%
GATAGTAACACAAGGATATT+GGG - chr1_1:50470808-50470827 Msa0026620:CDS 30.0%
!! ACGATTTGTTATAAGCAATG+AGG - chr1_1:50470932-50470951 Msa0026620:CDS 30.0%
TAAAAATTGCAGATGCAGAT+GGG + chr1_1:50471057-50471076 None:intergenic 30.0%
TTAAAAATTGCAGATGCAGA+TGG + chr1_1:50471058-50471077 None:intergenic 30.0%
! TTTACTATTTCTCTGTCTTG+AGG - chr1_1:50471125-50471144 Msa0026620:CDS 30.0%
GAAAACAGTTATAGCCTAAA+AGG - chr1_1:50471169-50471188 Msa0026620:CDS 30.0%
CTTTGTCTTTCAGATATAGA+GGG + chr1_1:50471307-50471326 None:intergenic 30.0%
! GTTTCTGCTAGTTGATATAA+CGG - chr1_1:50471610-50471629 Msa0026620:CDS 30.0%
! TAGTTGATATAACGGCAATA+GGG - chr1_1:50471618-50471637 Msa0026620:CDS 30.0%
GTTGAAAGATTTACGTGTTA+AGG + chr1_1:50471767-50471786 None:intergenic 30.0%
ACATACAAGTAAAAACGAAG+TGG + chr1_1:50471818-50471837 None:intergenic 30.0%
GACTTATTTCAATCACTATG+CGG - chr1_1:50471863-50471882 Msa0026620:intron 30.0%
TGAAATAGAAAATACCGTCA+CGG + chr1_1:50471912-50471931 None:intergenic 30.0%
!!! ATGCTATTTTCTGTAATCTG+CGG - chr1_1:50471952-50471971 Msa0026620:intron 30.0%
! ACATTTTTCTCTTCCCTAAA+CGG - chr1_1:50472232-50472251 Msa0026620:CDS 30.0%
! AAGATGCAGATTAGTGTTTT+GGG - chr1_1:50472565-50472584 Msa0026620:CDS 30.0%
!! ATTCTTTTTCATTATCGCCA+AGG + chr1_1:50472961-50472980 None:intergenic 30.0%
AAGTTAAGAACTCCAAAGAT+GGG - chr1_1:50473071-50473090 Msa0026620:intron 30.0%
! TCTGTCATTGCTGAATATTT+TGG - chr1_1:50473097-50473116 Msa0026620:intron 30.0%
ATTATCAGCAAAACAAGCAA+TGG - chr1_1:50473127-50473146 Msa0026620:intron 30.0%
TCCATCCAATACTAAAAAGT+TGG - chr1_1:50473238-50473257 Msa0026620:CDS 30.0%
!! ACCAACTTTTTAGTATTGGA+TGG + chr1_1:50473242-50473261 None:intergenic 30.0%
GGATGAATCTGATTAATTTC+CGG - chr1_1:50473273-50473292 Msa0026620:CDS 30.0%
GATGAATCTGATTAATTTCC+GGG - chr1_1:50473274-50473293 Msa0026620:CDS 30.0%
TTTCAACTTCTCCATTAGTA+CGG - chr1_1:50473298-50473317 Msa0026620:CDS 30.0%
AACATGTAAACTCAAGAACA+TGG + chr1_1:50473339-50473358 None:intergenic 30.0%
ACATGTTATATATATCACCC+AGG - chr1_1:50473352-50473371 Msa0026620:CDS 30.0%
TTATATATATCACCCAGGAA+TGG - chr1_1:50473357-50473376 Msa0026620:CDS 30.0%
ACACTACAACAAAAAGACAT+CGG + chr1_1:50473410-50473429 None:intergenic 30.0%
!! TTTTTGTTGTAGTGTTATGC+CGG - chr1_1:50473415-50473434 Msa0026620:CDS 30.0%
CTGCAACTAAACGACAATTT+AGG + chr1_1:50466770-50466789 None:intergenic 35.0%
! CTAAATTGTCGTTTAGTTGC+AGG - chr1_1:50466768-50466787 Msa0026620:three_prime_UTR 35.0%
!!! GTTGTAACTGGTTTTGATGA+TGG - chr1_1:50467086-50467105 Msa0026620:three_prime_UTR 35.0%
AAGAGAACAGAAGAAGAATG+AGG + chr1_1:50467161-50467180 None:intergenic 35.0%
CTCACAAAACTAATGCGAAT+AGG + chr1_1:50467447-50467466 None:intergenic 35.0%
!!! CTATTCGCATTAGTTTTGTG+AGG - chr1_1:50467445-50467464 Msa0026620:CDS 35.0%
!!! ATTAGTTTTGTGAGGCTGTT+TGG - chr1_1:50467453-50467472 Msa0026620:CDS 35.0%
!!! TTAGTTTTGTGAGGCTGTTT+GGG - chr1_1:50467454-50467473 Msa0026620:CDS 35.0%
!!! AAAGATTGGTGATGTTTTCC+AGG - chr1_1:50467745-50467764 Msa0026620:intron 35.0%
!!! AAGATTGGTGATGTTTTCCA+GGG - chr1_1:50467746-50467765 Msa0026620:intron 35.0%
ATTCACTAATCAGTTTCCTG+AGG - chr1_1:50467964-50467983 Msa0026620:intron 35.0%
!! CTGTATGGTAATGGTATGTT+TGG - chr1_1:50468045-50468064 Msa0026620:intron 35.0%
ATAGCTATGAGTAGTATAGG+AGG + chr1_1:50468165-50468184 None:intergenic 35.0%
CCAATAGCTATGAGTAGTAT+AGG + chr1_1:50468168-50468187 None:intergenic 35.0%
CCTATACTACTCATAGCTAT+TGG - chr1_1:50468165-50468184 Msa0026620:intron 35.0%
GCATAAAAGGAGATATTGCA+CGG - chr1_1:50468211-50468230 Msa0026620:intron 35.0%
CATAAAAGGAGATATTGCAC+GGG - chr1_1:50468212-50468231 Msa0026620:intron 35.0%
!! AGGAAAGAGTTTTGTCTGAA+TGG + chr1_1:50468272-50468291 None:intergenic 35.0%
AAAACTCTTTCCTCAATCAC+TGG - chr1_1:50468279-50468298 Msa0026620:intron 35.0%
AAAACAAGCTCACAGAACTT+GGG + chr1_1:50468353-50468372 None:intergenic 35.0%
AACAAAGGTTGCATACAGAA+CGG + chr1_1:50468452-50468471 None:intergenic 35.0%
ATATTGAGAGCAAGGAACAA+AGG + chr1_1:50468467-50468486 None:intergenic 35.0%
GAAACATTTAGCATTCAGCA+AGG + chr1_1:50468516-50468535 None:intergenic 35.0%
TTCTGTATGTTAACGTGAAC+AGG - chr1_1:50468533-50468552 Msa0026620:intron 35.0%
CGTGAACAGGAGTTAATAAT+TGG - chr1_1:50468546-50468565 Msa0026620:intron 35.0%
!!! TTTTATGAAGTTGATGGACG+TGG - chr1_1:50468588-50468607 Msa0026620:intron 35.0%
GAGAAAAGAAATTGGTAGGA+TGG - chr1_1:50468631-50468650 Msa0026620:intron 35.0%
GATCTGCAATAACACACAAA+AGG + chr1_1:50468668-50468687 None:intergenic 35.0%
GTTATTGCAGATCAAAGAAC+AGG - chr1_1:50468675-50468694 Msa0026620:intron 35.0%
TCTCATATGCTCTATGAATG+GGG - chr1_1:50468768-50468787 Msa0026620:intron 35.0%
ATCTATTGGGGAAAAGGATA+TGG - chr1_1:50468827-50468846 Msa0026620:intron 35.0%
!! TCTGAGGTTCTGAGAAAATA+TGG - chr1_1:50468939-50468958 Msa0026620:intron 35.0%
!! CTGAGGTTCTGAGAAAATAT+GGG - chr1_1:50468940-50468959 Msa0026620:intron 35.0%
!! TGAGGTTCTGAGAAAATATG+GGG - chr1_1:50468941-50468960 Msa0026620:intron 35.0%
CTACAACCTCACAAATTACT+TGG - chr1_1:50469076-50469095 Msa0026620:intron 35.0%
!! GCTTTTCCAAGTAATTTGTG+AGG + chr1_1:50469085-50469104 None:intergenic 35.0%
TTGGAAAAGCTACATGAGAA+GGG - chr1_1:50469095-50469114 Msa0026620:intron 35.0%
GTAACAGTTCAATAGAAGTG+TGG + chr1_1:50469141-50469160 None:intergenic 35.0%
TTAAAAGTGAAGACAGCATC+GGG - chr1_1:50469198-50469217 Msa0026620:intron 35.0%
TGCAATGTATGTTGCAAAGA+AGG - chr1_1:50469283-50469302 Msa0026620:intron 35.0%
AAGATCTTGCTTGAAGATCT+TGG - chr1_1:50469329-50469348 Msa0026620:intron 35.0%
! AGATCTTGGTAGTTATGAAG+AGG - chr1_1:50469343-50469362 Msa0026620:intron 35.0%
!! TTCTAGTCTTGAATCAAGTC+AGG - chr1_1:50469379-50469398 Msa0026620:intron 35.0%
GAAAATCCATAAGGGAATGA+GGG + chr1_1:50469580-50469599 None:intergenic 35.0%
AGAAAATCCATAAGGGAATG+AGG + chr1_1:50469581-50469600 None:intergenic 35.0%
TGAAGGAAAGTTCAATTCGT+TGG + chr1_1:50469681-50469700 None:intergenic 35.0%
TCATTAGACTGTGATACTGA+AGG + chr1_1:50469698-50469717 None:intergenic 35.0%
TTCAGTATCACAGTCTAATG+AGG - chr1_1:50469697-50469716 Msa0026620:intron 35.0%
TCAGTATCACAGTCTAATGA+GGG - chr1_1:50469698-50469717 Msa0026620:intron 35.0%
AAAATAAGTGCCCAAACCAA+TGG - chr1_1:50469758-50469777 Msa0026620:intron 35.0%
!! AGCAATAGTTCCATTGGTTT+GGG + chr1_1:50469771-50469790 None:intergenic 35.0%
TGATCAGAAAAGTTCCGAAA+AGG - chr1_1:50469790-50469809 Msa0026620:intron 35.0%
GAAAAGTTCCGAAAAGGAAA+AGG - chr1_1:50469796-50469815 Msa0026620:intron 35.0%
! GCGGATGTACTCAAATATTT+TGG - chr1_1:50470085-50470104 Msa0026620:intron 35.0%
!!! CTCAAATATTTTGGTGAGCT+TGG - chr1_1:50470094-50470113 Msa0026620:intron 35.0%
AGTTTGAAGGACAATTATGG+GGG + chr1_1:50470182-50470201 None:intergenic 35.0%
GAGTTTGAAGGACAATTATG+GGG + chr1_1:50470183-50470202 None:intergenic 35.0%
CAGAGTTTGAAGGACAATTA+TGG + chr1_1:50470185-50470204 None:intergenic 35.0%
!!! GGTTTTTTGACAGAGTTTGA+AGG + chr1_1:50470195-50470214 None:intergenic 35.0%
TGATCAAGGATTACATTGCT+CGG - chr1_1:50470233-50470252 Msa0026620:CDS 35.0%
ACGGCTATTTGTATATGCAA+TGG + chr1_1:50470396-50470415 None:intergenic 35.0%
!! AACCATAGTCTTATCCACTT+CGG + chr1_1:50470494-50470513 None:intergenic 35.0%
TGCTATCAGTGTCTATTATG+TGG + chr1_1:50470551-50470570 None:intergenic 35.0%
ATTCATGAACCTGCTTCTAA+TGG + chr1_1:50470699-50470718 None:intergenic 35.0%
TTATAGCCTAAAAGGACTAG+AGG - chr1_1:50471177-50471196 Msa0026620:CDS 35.0%
! AATATGCCTCTAGTCCTTTT+AGG + chr1_1:50471186-50471205 None:intergenic 35.0%
! AGACACTAGCCATATGTTTT+TGG + chr1_1:50471240-50471259 None:intergenic 35.0%
GCTTTGTCTTTCAGATATAG+AGG + chr1_1:50471308-50471327 None:intergenic 35.0%
! TTACATGTGGACTAAAAGCA+AGG + chr1_1:50471382-50471401 None:intergenic 35.0%
GAACAAGACTAGATTACATG+TGG + chr1_1:50471395-50471414 None:intergenic 35.0%
!! TCCTTTTAGTAAGCTTTAGC+TGG - chr1_1:50471443-50471462 Msa0026620:CDS 35.0%
TCCAGCTAAAGCTTACTAAA+AGG + chr1_1:50471447-50471466 None:intergenic 35.0%
! CTAGTTGATATAACGGCAAT+AGG - chr1_1:50471617-50471636 Msa0026620:CDS 35.0%
TTACGTGTTAAGGTGCATAT+AGG + chr1_1:50471757-50471776 None:intergenic 35.0%
GAAATAGAAAATACCGTCAC+GGG + chr1_1:50471911-50471930 None:intergenic 35.0%
!! ATTCTAGTTCTTAGAAACCG+TGG + chr1_1:50472026-50472045 None:intergenic 35.0%
AGTATCATAGGTGATCTCTT+AGG - chr1_1:50472095-50472114 Msa0026620:CDS 35.0%
GTATCATAGGTGATCTCTTA+GGG - chr1_1:50472096-50472115 Msa0026620:CDS 35.0%
TATCATAGGTGATCTCTTAG+GGG - chr1_1:50472097-50472116 Msa0026620:CDS 35.0%
TCTTTGTAACTCAAGCAACA+TGG - chr1_1:50472192-50472211 Msa0026620:CDS 35.0%
! AGAGTATCAGAAACCGTTTA+GGG + chr1_1:50472248-50472267 None:intergenic 35.0%
!! AAGAGTATCAGAAACCGTTT+AGG + chr1_1:50472249-50472268 None:intergenic 35.0%
TAAACGGTTTCTGATACTCT+TGG - chr1_1:50472248-50472267 Msa0026620:CDS 35.0%
CCTGCTCATATTTAATTACG+AGG + chr1_1:50472281-50472300 None:intergenic 35.0%
CCTCGTAATTAAATATGAGC+AGG - chr1_1:50472278-50472297 Msa0026620:intron 35.0%
TGAGCAGAGAATGTAGATAT+TGG - chr1_1:50472312-50472331 Msa0026620:intron 35.0%
!! AAATTAGAGCATTGACCGTT+AGG - chr1_1:50472386-50472405 Msa0026620:intron 35.0%
AAAAGACCACAATCACCTAA+CGG + chr1_1:50472404-50472423 None:intergenic 35.0%
GCAGGAACTAAAAGAGATAT+AGG + chr1_1:50472543-50472562 None:intergenic 35.0%
! GAAGATGCAGATTAGTGTTT+TGG - chr1_1:50472564-50472583 Msa0026620:CDS 35.0%
TAAGACAGACCTATATTCTG+GGG + chr1_1:50472996-50473015 None:intergenic 35.0%
CTAAGACAGACCTATATTCT+GGG + chr1_1:50472997-50473016 None:intergenic 35.0%
! TCTAAGACAGACCTATATTC+TGG + chr1_1:50472998-50473017 None:intergenic 35.0%
! AGAGCAAAATTCTAAGAGTC+AGG - chr1_1:50473033-50473052 Msa0026620:intron 35.0%
! AAAATTCTAAGAGTCAGGAC+AGG - chr1_1:50473038-50473057 Msa0026620:intron 35.0%
CAAGTTAAGAACTCCAAAGA+TGG - chr1_1:50473070-50473089 Msa0026620:intron 35.0%
AATGACAGAAAACCCATCTT+TGG + chr1_1:50473086-50473105 None:intergenic 35.0%
TAATGGAGAAGTTGAAAACC+CGG + chr1_1:50473295-50473314 None:intergenic 35.0%
CAACAAAAAGACATCGGAAT+CGG + chr1_1:50473404-50473423 None:intergenic 35.0%
! TTAGAAGGATTTGAAGGTAC+TGG - chr1_1:50473451-50473470 Msa0026620:CDS 35.0%
GGATTTAAATCATGCAGATG+AGG - chr1_1:50473617-50473636 Msa0026620:five_prime_UTR 35.0%
ATTTACAACGTGATCGATCG+AGG + chr1_1:50466827-50466846 None:intergenic 40.0%
TGCAAAATGCACAATTCCAG+AGG - chr1_1:50466983-50467002 Msa0026620:three_prime_UTR 40.0%
CAACGTGAAAGAGAAAGAGA+AGG - chr1_1:50467025-50467044 Msa0026620:three_prime_UTR 40.0%
TGAAAGAGAAAGAGAAGGAG+AGG - chr1_1:50467030-50467049 Msa0026620:three_prime_UTR 40.0%
! AAAATCGAGTGTTGTTCGAG+TGG - chr1_1:50467053-50467072 Msa0026620:three_prime_UTR 40.0%
CAACATCATGAAGAATGCCA+TGG - chr1_1:50467379-50467398 Msa0026620:CDS 40.0%
AATGCCATGGTTTAGTACCA+TGG - chr1_1:50467392-50467411 Msa0026620:CDS 40.0%
ATGCCATGGTTTAGTACCAT+GGG - chr1_1:50467393-50467412 Msa0026620:CDS 40.0%
TTTAGTACCATGGGTCTGTT+CGG - chr1_1:50467402-50467421 Msa0026620:CDS 40.0%
!!! AGATTGGTGATGTTTTCCAG+GGG - chr1_1:50467747-50467766 Msa0026620:intron 40.0%
TAATCAGTTTCCTGAGGCAA+TGG - chr1_1:50467970-50467989 Msa0026620:intron 40.0%
! ACTACTCATAGCTATTGGCT+TGG - chr1_1:50468170-50468189 Msa0026620:intron 40.0%
!! ATAGCTATTGGCTTGGACAA+TGG - chr1_1:50468177-50468196 Msa0026620:intron 40.0%
TTTCCACCTGAAGCTTGAAA+CGG + chr1_1:50468248-50468267 None:intergenic 40.0%
!! TTTCCTCAATCACTGGTCTT+GGG - chr1_1:50468286-50468305 Msa0026620:intron 40.0%
!! AATCACTGGTCTTGGGTTTA+GGG - chr1_1:50468293-50468312 Msa0026620:intron 40.0%
AAACAAGCTCACAGAACTTG+GGG + chr1_1:50468352-50468371 None:intergenic 40.0%
GAAAACAAGCTCACAGAACT+TGG + chr1_1:50468354-50468373 None:intergenic 40.0%
GTTAATAATTGGTCGACCAG+AGG - chr1_1:50468557-50468576 Msa0026620:intron 40.0%
GAGGGAGAAAAGAAATTGGT+AGG - chr1_1:50468627-50468646 Msa0026620:intron 40.0%
AAATTGGTAGGATGGTTTCG+TGG - chr1_1:50468639-50468658 Msa0026620:intron 40.0%
!! ATCTTTAACCAGAGCACTGT+GGG + chr1_1:50468745-50468764 None:intergenic 40.0%
CTTGGAAAAGCTACATGAGA+AGG - chr1_1:50469094-50469113 Msa0026620:intron 40.0%
TAAAAGTGAAGACAGCATCG+GGG - chr1_1:50469199-50469218 Msa0026620:intron 40.0%
CATTGCATGCTCATGGTAAT+TGG + chr1_1:50469270-50469289 None:intergenic 40.0%
CAACATACATTGCATGCTCA+TGG + chr1_1:50469277-50469296 None:intergenic 40.0%
ATGTATGTTGCAAAGAAGGC+TGG - chr1_1:50469287-50469306 Msa0026620:intron 40.0%
TGTATGTTGCAAAGAAGGCT+GGG - chr1_1:50469288-50469307 Msa0026620:intron 40.0%
GGGATGACAATAAAGGAGTA+TGG - chr1_1:50469404-50469423 Msa0026620:intron 40.0%
TCTAATAGAGCACAAGCCAT+CGG - chr1_1:50469433-50469452 Msa0026620:intron 40.0%
AGAATCTGAATTGTCTCCGA+TGG + chr1_1:50469452-50469471 None:intergenic 40.0%
GACAAAAGAGGACGTTCAAA+TGG - chr1_1:50469497-50469516 Msa0026620:intron 40.0%
CTGAGAAAATCAACAGGAGA+TGG + chr1_1:50469542-50469561 None:intergenic 40.0%
AGGTGAATCCTTGACCTTAT+TGG + chr1_1:50469615-50469634 None:intergenic 40.0%
! CAGCAATAGTTCCATTGGTT+TGG + chr1_1:50469772-50469791 None:intergenic 40.0%
CTGATCAGCAATAGTTCCAT+TGG + chr1_1:50469777-50469796 None:intergenic 40.0%
! TACACATGCTTAAGAGTGCA+TGG - chr1_1:50469846-50469865 Msa0026620:intron 40.0%
!! AGTAATCGCTTGCTATATGC+AGG - chr1_1:50469985-50470004 Msa0026620:intron 40.0%
AATTGCATGCTGCAAAAGAC+TGG - chr1_1:50470027-50470046 Msa0026620:intron 40.0%
ATTGCATGCTGCAAAAGACT+GGG - chr1_1:50470028-50470047 Msa0026620:intron 40.0%
AGACTGGGTGATTCAGTTAA+AGG - chr1_1:50470043-50470062 Msa0026620:intron 40.0%
TGGGTGATTCAGTTAAAGGA+GGG - chr1_1:50470047-50470066 Msa0026620:intron 40.0%
GTTTGAAGGACAATTATGGG+GGG + chr1_1:50470181-50470200 None:intergenic 40.0%
ACATAGACCTTCAACACCTT+CGG + chr1_1:50470847-50470866 None:intergenic 40.0%
ACGAAGTAATACTGCTGATG+TGG - chr1_1:50470877-50470896 Msa0026620:CDS 40.0%
TTATAAGCAATGAGGCTAGC+TGG - chr1_1:50470940-50470959 Msa0026620:CDS 40.0%
TCTTGAGGTCTGCATCAATT+GGG - chr1_1:50471140-50471159 Msa0026620:CDS 40.0%
CTATCCTAGTTTCGCTGTTA+GGG - chr1_1:50471567-50471586 Msa0026620:CDS 40.0%
TTTCGCTGTTAGGGCAATAA+CGG - chr1_1:50471576-50471595 Msa0026620:CDS 40.0%
CAAACACAACTCCACAAAAC+CGG + chr1_1:50471993-50472012 None:intergenic 40.0%
AGTTCTTAGAAACCGTGGTT+GGG + chr1_1:50472021-50472040 None:intergenic 40.0%
TAGTTCTTAGAAACCGTGGT+TGG + chr1_1:50472022-50472041 None:intergenic 40.0%
! GTGGTCTTTTAATGTGAAGC+AGG - chr1_1:50472414-50472433 Msa0026620:intron 40.0%
TACCACTGCAAACTCACATT+AGG + chr1_1:50472712-50472731 None:intergenic 40.0%
! TTTTCTGTAAACAGCACGGA+AGG - chr1_1:50472759-50472778 Msa0026620:intron 40.0%
AAAGTATGTTGTCTCTGTGC+AGG - chr1_1:50472790-50472809 Msa0026620:intron 40.0%
GGAAAGAGGTTCAAGATCTT+AGG - chr1_1:50472831-50472850 Msa0026620:intron 40.0%
AAGATCTTAGGACAAATGCG+AGG - chr1_1:50472843-50472862 Msa0026620:intron 40.0%
!! CTTTGGAGTTCTTAACTTGC+TGG + chr1_1:50473069-50473088 None:intergenic 40.0%
AACAAGCAATGGATCCACTT+CGG - chr1_1:50473138-50473157 Msa0026620:intron 40.0%
ACGATAACAAGCCGTACTAA+TGG + chr1_1:50473312-50473331 None:intergenic 40.0%
!! ATTTGAAGGTACTGGTTGTG+TGG - chr1_1:50473459-50473478 Msa0026620:CDS 40.0%
TCATGATAGCTTCTCCTTGA+AGG - chr1_1:50473506-50473525 Msa0026620:five_prime_UTR 40.0%
GTGATGAGTGAAGAAGCCAT+TGG + chr1_1:50466803-50466822 None:intergenic 45.0%
GCGATTCACAATCGATCGAT+CGG + chr1_1:50466912-50466931 None:intergenic 45.0%
GATCGATCGATTGTGAATCG+CGG - chr1_1:50466911-50466930 Msa0026620:three_prime_UTR 45.0%
CCATCTTGTTCTTCTTCCTC+TGG + chr1_1:50467002-50467021 None:intergenic 45.0%
CCAGAGGAAGAAGAACAAGA+TGG - chr1_1:50466999-50467018 Msa0026620:three_prime_UTR 45.0%
GGAAGGGGTAAAGTTGTAAC+TGG - chr1_1:50467074-50467093 Msa0026620:three_prime_UTR 45.0%
TCCTCGATCGAAGAAGCAAA+CGG + chr1_1:50467114-50467133 None:intergenic 45.0%
AGACCCATGGTACTAAACCA+TGG + chr1_1:50467399-50467418 None:intergenic 45.0%
ACATACATATGGCCCCTGTT+TGG + chr1_1:50467679-50467698 None:intergenic 45.0%
CACACACGCACACATACATA+TGG + chr1_1:50467690-50467709 None:intergenic 45.0%
TGAGTTCAAATCAAGACCCC+TGG + chr1_1:50467766-50467785 None:intergenic 45.0%
! GCAACTTCCTGGTAACGATT+GGG - chr1_1:50467822-50467841 Msa0026620:intron 45.0%
! CAACTTCCTGGTAACGATTG+GGG - chr1_1:50467823-50467842 Msa0026620:intron 45.0%
! GCAATCTGAAAGTACGAGCA+CGG - chr1_1:50467910-50467929 Msa0026620:intron 45.0%
CGCAATATCCCAACACAATC+AGG + chr1_1:50467941-50467960 None:intergenic 45.0%
! AGTGTCATTACCATTGCCTC+AGG + chr1_1:50467983-50468002 None:intergenic 45.0%
TATCACCCGTTTCAAGCTTC+AGG - chr1_1:50468239-50468258 Msa0026620:intron 45.0%
TTCCACCTGAAGCTTGAAAC+GGG + chr1_1:50468247-50468266 None:intergenic 45.0%
! CTTTCCTCAATCACTGGTCT+TGG - chr1_1:50468285-50468304 Msa0026620:intron 45.0%
AAACCCAAGACCAGTGATTG+AGG + chr1_1:50468292-50468311 None:intergenic 45.0%
!! CAATCACTGGTCTTGGGTTT+AGG - chr1_1:50468292-50468311 Msa0026620:intron 45.0%
CATTGCATGATCAACCACCA+AGG - chr1_1:50468373-50468392 Msa0026620:intron 45.0%
AGGCAAACCCTTGATCAGAT+TGG - chr1_1:50468396-50468415 Msa0026620:intron 45.0%
ACCCTTGATCAGATTGGATC+TGG - chr1_1:50468402-50468421 Msa0026620:intron 45.0%
GCCAGATCCAATCTGATCAA+GGG + chr1_1:50468406-50468425 None:intergenic 45.0%
TTTAATAGCCCACAGTGCTC+TGG - chr1_1:50468734-50468753 Msa0026620:intron 45.0%
!! CATCTTTAACCAGAGCACTG+TGG + chr1_1:50468746-50468765 None:intergenic 45.0%
CAGCAAGCAAGACTATGATG+AGG - chr1_1:50468974-50468993 Msa0026620:intron 45.0%
GCAAGACTATGATGAGGCAA+TGG - chr1_1:50468980-50468999 Msa0026620:intron 45.0%
GCTCATGGTAATTGGCAGAA+CGG + chr1_1:50469262-50469281 None:intergenic 45.0%
TGGTAGTTATGAAGAGGCCT+TGG - chr1_1:50469349-50469368 Msa0026620:intron 45.0%
AGTCTTGAATCAAGTCAGGC+AGG - chr1_1:50469383-50469402 Msa0026620:intron 45.0%
GTCTTGAATCAAGTCAGGCA+GGG - chr1_1:50469384-50469403 Msa0026620:intron 45.0%
TCAGGCAGGGATGACAATAA+AGG - chr1_1:50469397-50469416 Msa0026620:intron 45.0%
ATTAGGCTTTGCACAGACGA+GGG - chr1_1:50469473-50469492 Msa0026620:intron 45.0%
TCATCACCCTCATTCCCTTA+TGG - chr1_1:50469571-50469590 Msa0026620:intron 45.0%
TTGTTAATCTCCACCTGAGC+AGG + chr1_1:50469635-50469654 None:intergenic 45.0%
! AAGACGGCCCTTTTCCTTTT+CGG + chr1_1:50469807-50469826 None:intergenic 45.0%
! CCTTTTCACGCCTTTCAAGA+CGG + chr1_1:50469823-50469842 None:intergenic 45.0%
! CGTCTTGAAAGGCGTGAAAA+GGG - chr1_1:50469821-50469840 Msa0026620:intron 45.0%
AGTGGATGTTCTGTCTCTGA+AGG + chr1_1:50469872-50469891 None:intergenic 45.0%
CTGGGTGATTCAGTTAAAGG+AGG - chr1_1:50470046-50470065 Msa0026620:intron 45.0%
GGGTGATTCAGTTAAAGGAG+GGG - chr1_1:50470048-50470067 Msa0026620:intron 45.0%
! TCACTGAAAGTGTGAGGCAA+GGG + chr1_1:50470216-50470235 None:intergenic 45.0%
! ATCACTGAAAGTGTGAGGCA+AGG + chr1_1:50470217-50470236 None:intergenic 45.0%
! CCTTGATCACTGAAAGTGTG+AGG + chr1_1:50470222-50470241 None:intergenic 45.0%
CCTCACACTTTCAGTGATCA+AGG - chr1_1:50470219-50470238 Msa0026620:CDS 45.0%
GAAGCTTGAGCAGGAATCAA+AGG - chr1_1:50470255-50470274 Msa0026620:CDS 45.0%
GCAGGAATCAAAGGTGATTG+AGG - chr1_1:50470264-50470283 Msa0026620:CDS 45.0%
GGAATCAAAGGTGATTGAGG+AGG - chr1_1:50470267-50470286 Msa0026620:CDS 45.0%
!! CCACTTCGGTGTCTATTGTA+TGG + chr1_1:50470480-50470499 None:intergenic 45.0%
CCATACAATAGACACCGAAG+TGG - chr1_1:50470477-50470496 Msa0026620:CDS 45.0%
CACCGAAGTGGATAAGACTA+TGG - chr1_1:50470489-50470508 Msa0026620:CDS 45.0%
CTGTGCACACATAGAACCAT+AGG + chr1_1:50470635-50470654 None:intergenic 45.0%
GGAACGATGCTTACTTGAAG+CGG - chr1_1:50470761-50470780 Msa0026620:CDS 45.0%
TGGTAGTAGAGTAGCGTGAT+GGG - chr1_1:50470897-50470916 Msa0026620:CDS 45.0%
GCAGAGAATTGCAATCTCTC+TGG - chr1_1:50471000-50471019 Msa0026620:CDS 45.0%
GTCTTGAGGTCTGCATCAAT+TGG - chr1_1:50471139-50471158 Msa0026620:CDS 45.0%
GCTATCCTAGTTTCGCTGTT+AGG - chr1_1:50471566-50471585 Msa0026620:CDS 45.0%
ATTGCCCTAACAGCGAAACT+AGG + chr1_1:50471574-50471593 None:intergenic 45.0%
TTAGAAACCGTGGTTGGGTT+GGG + chr1_1:50472016-50472035 None:intergenic 45.0%
TGCTTGAACTCTCTGAGCAA+AGG - chr1_1:50472344-50472363 Msa0026620:intron 45.0%
CATTGACCGTTAGGTGATTG+TGG - chr1_1:50472395-50472414 Msa0026620:intron 45.0%
CACTAATCTGCATCTTCAGC+AGG + chr1_1:50472561-50472580 None:intergenic 45.0%
CTGCAAACTCACATTAGGCA+AGG + chr1_1:50472707-50472726 None:intergenic 45.0%
TGCCTAATGTGAGTTTGCAG+TGG - chr1_1:50472707-50472726 Msa0026620:intron 45.0%
GCATGCACTCATTCCATTTG+CGG - chr1_1:50472933-50472952 Msa0026620:intron 45.0%
TCATCTAGCAGTAGCTTCTG+AGG - chr1_1:50473181-50473200 Msa0026620:intron 45.0%
GAGCGAAAAGCTGAAAGGAA+GGG + chr1_1:50473220-50473239 None:intergenic 45.0%
TTGCAGGCAGCTTCTTCCAA+TGG - chr1_1:50466784-50466803 Msa0026620:three_prime_UTR 50.0%
GCGGAAGTTCGAATTCTTCG+AGG - chr1_1:50466950-50466969 Msa0026620:three_prime_UTR 50.0%
! TCGAGTGTTGTTCGAGTGGA+AGG - chr1_1:50467057-50467076 Msa0026620:three_prime_UTR 50.0%
! CGAGTGTTGTTCGAGTGGAA+GGG - chr1_1:50467058-50467077 Msa0026620:three_prime_UTR 50.0%
! GAGTGTTGTTCGAGTGGAAG+GGG - chr1_1:50467059-50467078 Msa0026620:three_prime_UTR 50.0%
ACCGTTTGCTTCTTCGATCG+AGG - chr1_1:50467110-50467129 Msa0026620:three_prime_UTR 50.0%
AGTCAATCCGAACAGACCCA+TGG + chr1_1:50467412-50467431 None:intergenic 50.0%
GCACATGGGTGCCTATATGT+TGG - chr1_1:50467713-50467732 Msa0026620:intron 50.0%
TTACCAGCAACGCAACTTCC+TGG - chr1_1:50467811-50467830 Msa0026620:intron 50.0%
TTACCAGGAAGTTGCGTTGC+TGG + chr1_1:50467817-50467836 None:intergenic 50.0%
! CGCAACTTCCTGGTAACGAT+TGG - chr1_1:50467821-50467840 Msa0026620:intron 50.0%
AGGCACAAAGCTGATTGCTG+GGG + chr1_1:50467866-50467885 None:intergenic 50.0%
CAGGCACAAAGCTGATTGCT+GGG + chr1_1:50467867-50467886 None:intergenic 50.0%
TCAGGCACAAAGCTGATTGC+TGG + chr1_1:50467868-50467887 None:intergenic 50.0%
! GCAATCAGCTTTGTGCCTGA+AGG - chr1_1:50467868-50467887 Msa0026620:intron 50.0%
TGCATGATCAACCACCAAGG+AGG - chr1_1:50468376-50468395 Msa0026620:intron 50.0%
TGATCAAGGGTTTGCCTCCT+TGG + chr1_1:50468393-50468412 None:intergenic 50.0%
CGCCAGATCCAATCTGATCA+AGG + chr1_1:50468407-50468426 None:intergenic 50.0%
! TTGATGGACGTGGTCCTTGT+TGG - chr1_1:50468598-50468617 Msa0026620:intron 50.0%
! TGATGGACGTGGTCCTTGTT+GGG - chr1_1:50468599-50468618 Msa0026620:intron 50.0%
! TGGTCCTTGTTGGGCTTTTG+AGG - chr1_1:50468608-50468627 Msa0026620:intron 50.0%
! GGTCCTTGTTGGGCTTTTGA+GGG - chr1_1:50468609-50468628 Msa0026620:intron 50.0%
TCTCCCTCAAAAGCCCAACA+AGG + chr1_1:50468615-50468634 None:intergenic 50.0%
GACTCAACAAGCAGATGCTG+CGG - chr1_1:50468911-50468930 Msa0026620:intron 50.0%
TCGACGTGGAAACAGCAATC+AGG - chr1_1:50469231-50469250 Msa0026620:intron 50.0%
CGACGTGGAAACAGCAATCA+GGG - chr1_1:50469232-50469251 Msa0026620:intron 50.0%
AGAAGGCTGGGAGACATGAA+TGG - chr1_1:50469300-50469319 Msa0026620:intron 50.0%
CATTAGGCTTTGCACAGACG+AGG - chr1_1:50469472-50469491 Msa0026620:intron 50.0%
ACAGACGAGGGTGACAAAAG+AGG - chr1_1:50469485-50469504 Msa0026620:intron 50.0%
AGGAAAAGGGCCGTCTTGAA+AGG - chr1_1:50469810-50469829 Msa0026620:intron 50.0%
! CCGTCTTGAAAGGCGTGAAA+AGG - chr1_1:50469820-50469839 Msa0026620:intron 50.0%
TATGCAGGCGCATGATCACA+AGG - chr1_1:50470000-50470019 Msa0026620:intron 50.0%
ATGCAGGCGCATGATCACAA+GGG - chr1_1:50470001-50470020 Msa0026620:intron 50.0%
AAGGAGGGGATCCATCTCTT+TGG - chr1_1:50470062-50470081 Msa0026620:intron 50.0%
AGGAGGGGATCCATCTCTTT+GGG - chr1_1:50470063-50470082 Msa0026620:intron 50.0%
AGTACATCCGCCCAAAGAGA+TGG + chr1_1:50470076-50470095 None:intergenic 50.0%
! CAAGTAAGCATCGTTCCTGC+TGG + chr1_1:50470758-50470777 None:intergenic 50.0%
AGGATATTGGGTCAGCAGAG+TGG - chr1_1:50470820-50470839 Msa0026620:CDS 50.0%
GGATATTGGGTCAGCAGAGT+GGG - chr1_1:50470821-50470840 Msa0026620:CDS 50.0%
GTGGTAGTAGAGTAGCGTGA+TGG - chr1_1:50470896-50470915 Msa0026620:CDS 50.0%
!! GTAGAGTAGCGTGATGGGTT+TGG - chr1_1:50470902-50470921 Msa0026620:CDS 50.0%
! AATGAGGCTAGCTGGAGAGA+GGG - chr1_1:50470948-50470967 Msa0026620:CDS 50.0%
TTTCCGCTATTTGCCCGTGA+CGG - chr1_1:50471895-50471914 Msa0026620:intron 50.0%
ATACCGTCACGGGCAAATAG+CGG + chr1_1:50471901-50471920 None:intergenic 50.0%
CTTAGAAACCGTGGTTGGGT+TGG + chr1_1:50472017-50472036 None:intergenic 50.0%
CATAGGTGATCTCTTAGGGG+TGG - chr1_1:50472100-50472119 Msa0026620:CDS 50.0%
AGGAAGACACACAGGCAATG+AGG - chr1_1:50472810-50472829 Msa0026620:intron 50.0%
CACACAGGCAATGAGGAAAG+AGG - chr1_1:50472817-50472836 Msa0026620:intron 50.0%
ATGCACATGAAGTGCACAGC+AGG + chr1_1:50472917-50472936 None:intergenic 50.0%
TCATTCCATTTGCGGTGCCT+TGG - chr1_1:50472941-50472960 Msa0026620:intron 50.0%
!! TATATTCTGGGGCACACTCG+GGG + chr1_1:50472985-50473004 None:intergenic 50.0%
!! CTATATTCTGGGGCACACTC+GGG + chr1_1:50472986-50473005 None:intergenic 50.0%
!! CCTATATTCTGGGGCACACT+CGG + chr1_1:50472987-50473006 None:intergenic 50.0%
TCCACTTCGGATCTCAGATC+TGG - chr1_1:50473151-50473170 Msa0026620:intron 50.0%
! TCCAGATCTGAGATCCGAAG+TGG + chr1_1:50473155-50473174 None:intergenic 50.0%
GGAGCGAAAAGCTGAAAGGA+AGG + chr1_1:50473221-50473240 None:intergenic 50.0%
GGATGGAGCGAAAAGCTGAA+AGG + chr1_1:50473225-50473244 None:intergenic 50.0%
TTGATGAGCGAGCCATTCCT+GGG + chr1_1:50473372-50473391 None:intergenic 50.0%
CGATCGATTGTGAATCGCGG+CGG - chr1_1:50466914-50466933 Msa0026620:three_prime_UTR 55.0%
CGTCTTCCCCAATCGTTACC+AGG + chr1_1:50467832-50467851 None:intergenic 55.0%
ACGGCGAGTCCTGATTGTGT+TGG - chr1_1:50467929-50467948 Msa0026620:intron 55.0%
CGGCGAGTCCTGATTGTGTT+GGG - chr1_1:50467930-50467949 Msa0026620:intron 55.0%
CACCCGTTTCAAGCTTCAGG+TGG - chr1_1:50468242-50468261 Msa0026620:intron 55.0%
!! CACTGGTCTTGGGTTTAGGG+TGG - chr1_1:50468296-50468315 Msa0026620:intron 55.0%
! GGTCTTGGGTTTAGGGTGGA+CGG - chr1_1:50468300-50468319 Msa0026620:intron 55.0%
TCAAGGGTTTGCCTCCTTGG+TGG + chr1_1:50468390-50468409 None:intergenic 55.0%
AGATGCTGCGGCTACTTCTG+AGG - chr1_1:50468923-50468942 Msa0026620:intron 55.0%
CGGGGAACTTAAGTTCGACG+TGG - chr1_1:50469217-50469236 Msa0026620:intron 55.0%
GGTCAAGGATTCACCTGCTC+AGG - chr1_1:50469619-50469638 Msa0026620:intron 55.0%
CAAGGATTCACCTGCTCAGG+TGG - chr1_1:50469622-50469641 Msa0026620:intron 55.0%
AGGGGATCCATCTCTTTGGG+CGG - chr1_1:50470066-50470085 Msa0026620:intron 55.0%
CATTGCTCGGAAGCTTGAGC+AGG - chr1_1:50470246-50470265 Msa0026620:CDS 55.0%
! CAATGAGGCTAGCTGGAGAG+AGG - chr1_1:50470947-50470966 Msa0026620:CDS 55.0%
!! ATCTCTCTGGAGCTCAGCTC+TGG - chr1_1:50471013-50471032 Msa0026620:CDS 55.0%
!! TCTCTCTGGAGCTCAGCTCT+GGG - chr1_1:50471014-50471033 Msa0026620:CDS 55.0%
!! AGCTCAGCTCTGGGGTGATT+GGG - chr1_1:50471023-50471042 Msa0026620:CDS 55.0%
GCTCTAGCGCTGTAGCATAG+CGG - chr1_1:50471512-50471531 Msa0026620:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr1_1:50471979-50471998 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr1_1:50471979-50471998 Msa0026620:CDS 55.0%
!! CTCCACAAAACCGGCTTGTG+AGG + chr1_1:50471984-50472003 None:intergenic 55.0%
GTGTTTGCCCAACCCAACCA+CGG - chr1_1:50472006-50472025 Msa0026620:CDS 55.0%
CTCTGTGCAGGAAGACACAC+AGG - chr1_1:50472802-50472821 Msa0026620:intron 55.0%
ACATGAAGTGCACAGCAGGC+AGG + chr1_1:50472913-50472932 None:intergenic 55.0%
!! TATCGCCAAGGCACCGCAAA+TGG + chr1_1:50472949-50472968 None:intergenic 55.0%
CCGAGTGTGCCCCAGAATAT+AGG - chr1_1:50472984-50473003 Msa0026620:intron 55.0%
CTTGATGAGCGAGCCATTCC+TGG + chr1_1:50473373-50473392 None:intergenic 55.0%
TCGCGGCGGCGATGTATCAA+TGG - chr1_1:50466928-50466947 Msa0026620:three_prime_UTR 60.0%
CGGCGGCGATGTATCAATGG+CGG - chr1_1:50466931-50466950 Msa0026620:three_prime_UTR 60.0%
TGTGCGTGTGTGCGAGCACA+TGG - chr1_1:50467698-50467717 Msa0026620:intron 60.0%
GTGCGTGTGTGCGAGCACAT+GGG - chr1_1:50467699-50467718 Msa0026620:intron 60.0%
!! GAGTGGGCCGAAGGTGTTGA+AGG - chr1_1:50470837-50470856 Msa0026620:CDS 60.0%
!! CTCTCTGGAGCTCAGCTCTG+GGG - chr1_1:50471015-50471034 Msa0026620:CDS 60.0%
!! GAGCTCAGCTCTGGGGTGAT+TGG - chr1_1:50471022-50471041 Msa0026620:CDS 60.0%
GTGCACAGCAGGCAGGTCTA+GGG + chr1_1:50472906-50472925 None:intergenic 60.0%
AGTGCACAGCAGGCAGGTCT+AGG + chr1_1:50472907-50472926 None:intergenic 60.0%
GCGGTCCTCACCTCACAAGC+CGG - chr1_1:50471971-50471990 Msa0026620:intron 65.0%
GGGTCAGCAGAGTGGGCCGA+AGG - chr1_1:50470828-50470847 Msa0026620:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50466742 50473685 50466742 ID=Msa0026620;Name=Msa0026620
chr1_1 mRNA 50466742 50473685 50466742 ID=Msa0026620-mRNA-1;Parent=Msa0026620;Name=Msa0026620-mRNA-1;_AED=0.22;_eAED=0.22;_QI=197|1|1|1|1|1|5|484|968
chr1_1 exon 50466742 50467615 50466742 ID=Msa0026620-mRNA-1:exon:14666;Parent=Msa0026620-mRNA-1
chr1_1 exon 50470112 50471872 50470112 ID=Msa0026620-mRNA-1:exon:14665;Parent=Msa0026620-mRNA-1
chr1_1 exon 50471972 50472295 50471972 ID=Msa0026620-mRNA-1:exon:14664;Parent=Msa0026620-mRNA-1
chr1_1 exon 50472436 50472609 50472436 ID=Msa0026620-mRNA-1:exon:14663;Parent=Msa0026620-mRNA-1
chr1_1 exon 50473231 50473685 50473231 ID=Msa0026620-mRNA-1:exon:14662;Parent=Msa0026620-mRNA-1
chr1_1 five_prime_UTR 50473489 50473685 50473489 ID=Msa0026620-mRNA-1:five_prime_utr;Parent=Msa0026620-mRNA-1
chr1_1 CDS 50473231 50473488 50473231 ID=Msa0026620-mRNA-1:cds;Parent=Msa0026620-mRNA-1
chr1_1 CDS 50472436 50472609 50472436 ID=Msa0026620-mRNA-1:cds;Parent=Msa0026620-mRNA-1
chr1_1 CDS 50471972 50472295 50471972 ID=Msa0026620-mRNA-1:cds;Parent=Msa0026620-mRNA-1
chr1_1 CDS 50470112 50471872 50470112 ID=Msa0026620-mRNA-1:cds;Parent=Msa0026620-mRNA-1
chr1_1 CDS 50467226 50467615 50467226 ID=Msa0026620-mRNA-1:cds;Parent=Msa0026620-mRNA-1
chr1_1 three_prime_UTR 50466742 50467225 50466742 ID=Msa0026620-mRNA-1:three_prime_utr;Parent=Msa0026620-mRNA-1
Gene Sequence

>Msa0026620

ATGTATCAATGGCGGAAGTTCGAATTCTTCGAGGAGAAGTACGTTGCAAAATGCACAATTCCAGAGGAAGAAGAACAAGATGGCAACAACGTGAAAGAGAAAGAGAAGGAGAGGAAAATCGAGTGTTGTTCGAGTGGAAGGGGTAAAGTTGTAACTGGTTTTGATGATGGAACCGTTTGCTTCTTCGATCGAGGACTCAAGTTCAATTATTCTTTTCAACCTCATTCTTCTTCTGTTCTCTTTATTCAACAACTCAAGCAACGCAACTTCCTGGTAACGATTGGGGAAGACGAACAACTTACTCCCCAGCAATCAGCTTTGTGCCTGAAGGTTTTTGACTTAGATAAGATGCAATCTGAAAGTACGAGCACGGCGAGTCCTGATTGTGTTGGGATATTGCGTATATTCACTAATCAGTTTCCTGAGGCAATGATTACATCTTTTATTGTCTTAGAGGAAGTGCCTCCTATACTACTCATAGCTATTGGCTTGGACAATGGTTCAATTTACTGCATAAAAGGAGATATTGCACGGGAGCGTATCACCCGTTTCAAGCTTCAGGTGGAAAACCATTCAGACAAAACTCTTTCCTCAATCACTGGTCTTGGGTTTAGGGTGGACGGTCAATCACTTCAGTTGTTTGCAGTAACCCCAAGTTCTGTGAGCTTGTTTTCATTGCATGATCAACCACCAAGGAGGCAAACCCTTGATCAGATTGGATCTGGCGTGAACAGTGTTACAATGAGTGACCGTTCTGAGTTAATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGACGTGGTCCTTGTTGGGCTTTTGAGGGAGAAAAGAAATTGGTAGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACTTGAAGAATCGTTTAATAGCCCACAGTGCTCTGGTTAAAGATGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGACAGACAAATCAACTTTATCTATTGGGGAAAAGGATATGGAAAGCAAATTAGACATGTTATTCAAGAAAAACCTATATACTGTGGCAATTAATCTTGTTCAGACTCAACAAGCAGATGCTGCGGCTACTTCTGAGGTTCTGAGAAAATATGGGGATCATCTATACAGCAAGCAAGACTATGATGAGGCAATGGCTCAGTACATAAATACTATTGGTCAACTTGAACCTTCTTATGTGATACAAAAGTTTTTGGATGCTCAGAGAATCTACAACCTCACAAATTACTTGGAAAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTGAACTGTTACACCAAATTGAAAGATGTTGAAAAACTAAACTTGTTTATTAAAAGTGAAGACAGCATCGGGGAACTTAAGTTCGACGTGGAAACAGCAATCAGGGTTTGCCGTTCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCTGGGAGACATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGTTATGAAGAGGCCTTGGAATATATTTCTAGTCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGTAAAATTCTAATAGAGCACAAGCCATCGGAGACAATTCAGATTCTCATTAGGCTTTGCACAGACGAGGGTGACAAAAGAGGACGTTCAAATGGTGTGTATGTGTCTATGTTGCCATCTCCTGTTGATTTTCTCAGCATTTTCGTTCATCACCCTCATTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGATTCACCTGCTCAGGTGGAGATTAACAATACCCTCTTAGAGTTGTATATATCCAACGAATTGAACTTTCCTTCAGTATCACAGTCTAATGAGGGTGCAGATTACCTTAACGTAGCATCAGAAAAAACTTCAAAAATAAGTGCCCAAACCAATGGAACTATTGCTGATCAGAAAAGTTCCGAAAAGGAAAAGGGCCGTCTTGAAAGGCGTGAAAAGGGTCTACACATGCTTAAGAGTGCATGGCCTTCAGAGACAGAACATCCACTTTATGATGTTGATTTAGCTATTATACTGTGTGAAATGAATTCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAGGAAGTAATCGCTTGCTATATGCAGGCGCATGATCACAAGGGATTAATTGCATGCTGCAAAAGACTGGGTGATTCAGTTAAAGGAGGGGATCCATCTCTTTGGGCGGATGTACTCAAATATTTTGGTGAGCTTGGAGAAGATTGCTCCAAAGAAGTAAAAGAAGTTTTGAATTACATTGAAAGGGATAATATTTTACCCCCCATAATTGTCCTTCAAACTCTGTCAAAAAACCCTTGCCTCACACTTTCAGTGATCAAGGATTACATTGCTCGGAAGCTTGAGCAGGAATCAAAGGTGATTGAGGAGGACCGACAAGCTATTGAAAAATATCAGGAAGACACACAGGCAATGAGGAAAGAGGTTCAAGATCTTAGGACAAATGCGAGGATTTTTCAGCTTAGCAAGTGCACAGCATGCACTTTCACCCTAGACCTGCCTGCTGTGCACTTCATGTGCATGCACTCATTCCATTTGCGGTGCCTTGGCGATAATGAAAAAGAATGCCCCGAGTGTGCCCCAGAATATAGGTCTGTCTTAGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGAGTCAGGACAGGTTTTTCCAGCAAGTTAAGAACTCCAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATTATCAGCAAAACAAGCAATGGATCCACTTCGGATCTCAGATCTGGAAATGCATCATCTAGCAGTAGCTTCTGA
Protein sequence

>Msa0026620

MYQWRKFEFFEEKYVAKCTIPEEEEQDGNNVKEKEKERKIECCSSGRGKVVTGFDDGTVCFFDRGLKFNYSFQPHSSSVLFIQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQSESTSTASPDCVGILRIFTNQFPEAMITSFIVLEEVPPILLIAIGLDNGSIYCIKGDIARERITRFKLQVENHSDKTLSSITGLGFRVDGQSLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVTMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLVGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKDVSHMLYEWGNIILIMTDKSTLSIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATSEVLRKYGDHLYSKQDYDEAMAQYINTIGQLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSEDSIGELKFDVETAIRVCRSANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPSETIQILIRLCTDEGDKRGRSNGVYVSMLPSPVDFLSIFVHHPHSLMDFLEKYTNKVKDSPAQVEINNTLLELYISNELNFPSVSQSNEGADYLNVASEKTSKISAQTNGTIADQKSSEKEKGRLERREKGLHMLKSAWPSETEHPLYDVDLAIILCEMNSFKDGLLYLYEKMKLYKEVIACYMQAHDHKGLIACCKRLGDSVKGGDPSLWADVLKYFGELGEDCSKEVKEVLNYIERDNILPPIIVLQTLSKNPCLTLSVIKDYIARKLEQESKVIEEDRQAIEKYQEDTQAMRKEVQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKSQDRFFQQVKNSKDGFSVIAEYFGKGIISKTSNGSTSDLRSGNASSSSSF*