AlfalfaGEDB | Msa0026690

M. sativa cultivar zhongmu-4 / Msa0026690

KEGG: K12194
GO: -
PFAM: PF16712.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026690	sp\|Q9SZE4\|VP322_ARATH	69.403	134	19	2	34	145	86	219	4.51e-51	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026690	Msa0418070	0.816275	6.013733e-52	-8.615850e-47
Msa0026690	Msa0778490	0.833271	5.868989e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026690	MtrunA17_Chr6g0487521	75.188	133	12	1	34	145	88	220	3.52e-61	187
Msa0026690	MtrunA17_Chr8g0389481	64.662	133	24	3	34	145	92	222	4.10e-45	147
Msa0026690	MtrunA17_Chr8g0389471	59.091	132	34	1	34	145	90	221	1.11e-41	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0026690	AT4G29160.2	69.403	134	19	2	34	145	59	192	2.15e-52	164
Msa0026690	AT4G29160.1	69.403	134	19	2	34	145	86	219	4.58e-52	164
Msa0026690	AT4G29160.3	69.403	134	19	2	34	145	86	219	4.58e-52	164
Msa0026690	AT2G19830.1	66.406	128	26	3	34	145	68	194	7.11e-47	150
Msa0026690	AT2G19830.2	66.406	128	26	3	34	145	87	213	1.52e-46	150

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Find 113 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAACGAGAGAAGGG+AGG	0.577096	1_1:-50640278	Msa0026690:five_prime_UTR
AAACAGAACGAGAGAAGGGA+GGG	0.502519	1_1:-50640277	Msa0026690:five_prime_UTR
AAATAAGCAGCTGCACCAAT+TGG	0.420089	1_1:+50634495	None:intergenic
AAATAGCATGGTAAAACCTG+TGG	0.625905	1_1:+50637913	None:intergenic
AAATCATGTGCAAAATGAGA+AGG	0.599565	1_1:-50638535	Msa0026690:five_prime_UTR
AACAGGAGCAACTACTATGA+AGG	0.534991	1_1:-50634721	Msa0026690:CDS
AATATGGTAATGAGGAACAA+GGG	0.673181	1_1:-50640034	Msa0026690:five_prime_UTR
AATCGAGAGTGCTAGAGCAG+TGG	0.666858	1_1:-50637992	Msa0026690:five_prime_UTR
AATGAAATCCACCAAATGAA+AGG	0.559194	1_1:+50638644	None:intergenic
AATTATGTCCTTTCATTTGG+TGG	0.399033	1_1:-50638652	Msa0026690:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGGGTTTATTTCAGAAAT+TGG	-	chr1_1:50634047-50634066	Msa0026690:intron	30.0%
CATTAGTGTAAGTGTAATCA+TGG	-	chr1_1:50634448-50634467	Msa0026690:intron	30.0%
GTAATCATGGGATCTTAATA+CGG	-	chr1_1:50634461-50634480	Msa0026690:intron	30.0%
GTTTGGTATCACTTAACAAT+AGG	-	chr1_1:50634749-50634768	Msa0026690:CDS	30.0%
CACATCATATTCATTGCTTT+AGG	+	chr1_1:50634942-50634961	None:intergenic	30.0%
GTAGGATATGAAACTTTGAA+CGG	-	chr1_1:50635052-50635071	Msa0026690:intron	30.0%
TAGGATATGAAACTTTGAAC+GGG	-	chr1_1:50635053-50635072	Msa0026690:intron	30.0%
CATATTGCCGTAACAAAAAT+AGG	-	chr1_1:50635215-50635234	Msa0026690:intron	30.0%
CATGTGTTGGAGATAATATT+GGG	+	chr1_1:50635419-50635438	None:intergenic	30.0%
TCATGTGTTGGAGATAATAT+TGG	+	chr1_1:50635420-50635439	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	50633871	50640300	50633871	ID=Msa0026690;Name=Msa0026690
chr1_1	mRNA	50633871	50640300	50633871	ID=Msa0026690-mRNA-1;Parent=Msa0026690;Name=Msa0026690-mRNA-1;_AED=0.21;_eAED=0.21;_QI=1930\|0.77\|0.9\|1\|0.44\|0.5\|10\|0\|145
chr1_1	exon	50633871	50633999	50633871	ID=Msa0026690-mRNA-1:exon:14730;Parent=Msa0026690-mRNA-1
chr1_1	exon	50634488	50634602	50634488	ID=Msa0026690-mRNA-1:exon:14729;Parent=Msa0026690-mRNA-1
chr1_1	exon	50634705	50634796	50634705	ID=Msa0026690-mRNA-1:exon:14728;Parent=Msa0026690-mRNA-1
chr1_1	exon	50637644	50637712	50637644	ID=Msa0026690-mRNA-1:exon:14727;Parent=Msa0026690-mRNA-1
chr1_1	exon	50637889	50638070	50637889	ID=Msa0026690-mRNA-1:exon:14726;Parent=Msa0026690-mRNA-1
chr1_1	exon	50638160	50638247	50638160	ID=Msa0026690-mRNA-1:exon:14725;Parent=Msa0026690-mRNA-1
chr1_1	exon	50638391	50638418	50638391	ID=Msa0026690-mRNA-1:exon:14724;Parent=Msa0026690-mRNA-1
chr1_1	exon	50638521	50639607	50638521	ID=Msa0026690-mRNA-1:exon:14723;Parent=Msa0026690-mRNA-1
chr1_1	exon	50639628	50640152	50639628	ID=Msa0026690-mRNA-1:exon:14722;Parent=Msa0026690-mRNA-1
chr1_1	exon	50640248	50640300	50640248	ID=Msa0026690-mRNA-1:exon:14721;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50640248	50640300	50640248	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50639628	50640152	50639628	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50638521	50639607	50638521	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50638391	50638418	50638391	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50638160	50638247	50638160	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	five_prime_UTR	50637922	50638070	50637922	ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1
chr1_1	CDS	50637889	50637921	50637889	ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1
chr1_1	CDS	50637644	50637712	50637644	ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1
chr1_1	CDS	50634705	50634796	50634705	ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1
chr1_1	CDS	50634488	50634602	50634488	ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1
chr1_1	CDS	50633871	50633999	50633871	ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1

Gene Sequence

>Msa0026690

ATGCTATTTGATTGCACAATTATGATTGTACATGATGTGGATGGACTGGTGGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGTAAGATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAACAGTAGATGCGTTAAGAACAGGAGCAACTACTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTCGACAAGACCATGGACGAGATAAATGAACAGACTGAGAATATGAAGCAGATTCAAGAAGCATTGTCAGCTCCAATTGGTGCAGCTGCTTATTTTGACGAGCCAACATTTACAGCTCCTGCTCCCACAGTGCATGTCTCAGCTGGGAGGCAACCTGCACGTCCTGTTCCTACAAAGCCGACTCCTGAGGAAGATGAATTGGCAGCTCTGCAGGCTGTGATGGCACTTTGA

Protein sequence

>Msa0026690

MLFDCTIMIVHDVDGLVEEVQEARRIRLLHQPSKMIMLEGAKATTETVDALRTGATTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAAYFDEPTFTAPAPTVHVSAGRQPARPVPTKPTPEEDELAALQAVMAL*