Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026690 | sp|Q9SZE4|VP322_ARATH | 69.403 | 134 | 19 | 2 | 34 | 145 | 86 | 219 | 4.51e-51 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026690 | Msa0418070 | 0.816275 | 6.013733e-52 | -8.615850e-47 |
| Msa0026690 | Msa0778490 | 0.833271 | 5.868989e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026690 | MtrunA17_Chr6g0487521 | 75.188 | 133 | 12 | 1 | 34 | 145 | 88 | 220 | 3.52e-61 | 187 |
| Msa0026690 | MtrunA17_Chr8g0389481 | 64.662 | 133 | 24 | 3 | 34 | 145 | 92 | 222 | 4.10e-45 | 147 |
| Msa0026690 | MtrunA17_Chr8g0389471 | 59.091 | 132 | 34 | 1 | 34 | 145 | 90 | 221 | 1.11e-41 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026690 | AT4G29160.2 | 69.403 | 134 | 19 | 2 | 34 | 145 | 59 | 192 | 2.15e-52 | 164 |
| Msa0026690 | AT4G29160.1 | 69.403 | 134 | 19 | 2 | 34 | 145 | 86 | 219 | 4.58e-52 | 164 |
| Msa0026690 | AT4G29160.3 | 69.403 | 134 | 19 | 2 | 34 | 145 | 86 | 219 | 4.58e-52 | 164 |
| Msa0026690 | AT2G19830.1 | 66.406 | 128 | 26 | 3 | 34 | 145 | 68 | 194 | 7.11e-47 | 150 |
| Msa0026690 | AT2G19830.2 | 66.406 | 128 | 26 | 3 | 34 | 145 | 87 | 213 | 1.52e-46 | 150 |
Find 113 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGCAATTGGTTAAATTTC+TGG | 0.078085 | 1_1:+50638770 | None:intergenic |
| TTGGGGTTTATTTCAGAAAT+TGG | 0.169000 | 1_1:-50640102 | Msa0026690:five_prime_UTR |
| GGTACCAGTTTCATTGATTT+TGG | 0.172670 | 1_1:-50639516 | Msa0026690:five_prime_UTR |
| ATCTCATGCATGTTGGTTTC+TGG | 0.193122 | 1_1:-50640072 | Msa0026690:five_prime_UTR |
| CATTTCATGGTTTGTGACTA+TGG | 0.200124 | 1_1:-50638625 | Msa0026690:five_prime_UTR |
| ATGCAAGTAGCAAAATTTAT+AGG | 0.229132 | 1_1:-50639004 | Msa0026690:five_prime_UTR |
| TGTTCATCACAACAAATATT+AGG | 0.242080 | 1_1:-50639867 | Msa0026690:five_prime_UTR |
| CTTGCATGTGATTTATGTTT+TGG | 0.243015 | 1_1:-50639916 | Msa0026690:five_prime_UTR |
| ATTTGGTGGATTTCATTTCA+TGG | 0.251841 | 1_1:-50638638 | Msa0026690:five_prime_UTR |
| TTGGTTTCTGGTGTTGATTT+TGG | 0.301252 | 1_1:-50640060 | Msa0026690:five_prime_UTR |
| AGAGCAGTGGTGCTGGGAAT+TGG | 0.301411 | 1_1:-50637979 | Msa0026690:five_prime_UTR |
| TTCAATTATGTCCTTTCATT+TGG | 0.301840 | 1_1:-50638655 | Msa0026690:five_prime_UTR |
| TGCAAGTAGCAAAATTTATA+GGG | 0.306920 | 1_1:-50639003 | Msa0026690:five_prime_UTR |
| GCTGATAGCAGGCACCTTAA+TGG | 0.308786 | 1_1:+50638376 | None:intergenic |
| TCATGTGTTGGAGATAATAT+TGG | 0.315523 | 1_1:+50638732 | None:intergenic |
| CCCACAGTGCATGTCTCAGC+TGG | 0.318746 | 1_1:-50633956 | Msa0026690:CDS |
| GAGCAGTGGTGCTGGGAATT+GGG | 0.318997 | 1_1:-50637978 | Msa0026690:five_prime_UTR |
| ATCAAAACAACTTATATTCA+TGG | 0.333826 | 1_1:+50639431 | None:intergenic |
| CACATCATATTCATTGCTTT+AGG | 0.340171 | 1_1:+50639210 | None:intergenic |
| TAACAAAATTCCGGACGTTT+TGG | 0.341445 | 1_1:-50639537 | Msa0026690:five_prime_UTR |
| AGGCTTCTGAAGATGCTAAA+AGG | 0.361461 | 1_1:-50638050 | Msa0026690:five_prime_UTR |
| TAGAGTGAATAGATCCATTA+AGG | 0.364253 | 1_1:-50638390 | Msa0026690:intron |
| ATGGTTAGTTAACAAAATTC+CGG | 0.365200 | 1_1:-50639546 | Msa0026690:five_prime_UTR |
| TGCTCTAGCACTCTCGATTT+CGG | 0.373790 | 1_1:+50637996 | None:intergenic |
| TCCTCAGGAGTCGGCTTTGT+AGG | 0.381433 | 1_1:+50633911 | None:intergenic |
| GTTCATGCTCTACATCAAAT+AGG | 0.383482 | 1_1:-50639050 | Msa0026690:five_prime_UTR |
| GTTTGGTATCACTTAACAAT+AGG | 0.386577 | 1_1:-50639400 | Msa0026690:five_prime_UTR |
| TTTCAACTTAATGAATTTAG+TGG | 0.390978 | 1_1:+50639185 | None:intergenic |
| AGATGAATTGGCAGCTCTGC+AGG | 0.394946 | 1_1:-50633888 | Msa0026690:CDS |
| AATTATGTCCTTTCATTTGG+TGG | 0.399033 | 1_1:-50638652 | Msa0026690:five_prime_UTR |
| ATTAAGCAATGTACCTTACT+TGG | 0.401978 | 1_1:+50637630 | None:intergenic |
| TCGTCTACAGACTTCAAATC+TGG | 0.404710 | 1_1:+50639492 | None:intergenic |
| TGGACCAAAATCAATGAAAC+TGG | 0.410953 | 1_1:+50639512 | None:intergenic |
| GACTCCTGAGGAAGATGAAT+TGG | 0.412289 | 1_1:-50633900 | Msa0026690:CDS |
| AAATAAGCAGCTGCACCAAT+TGG | 0.420089 | 1_1:+50634495 | None:intergenic |
| CATTAGTGTAAGTGTAATCA+TGG | 0.422986 | 1_1:-50639701 | Msa0026690:five_prime_UTR |
| CATCATAAAAGCTAAAATAT+AGG | 0.425665 | 1_1:+50638869 | None:intergenic |
| ACAGTAGATGCGTTAAGAAC+AGG | 0.444660 | 1_1:-50634738 | Msa0026690:CDS |
| GAACGAGAGAAGGGAGGGAG+AGG | 0.446128 | 1_1:-50640272 | Msa0026690:five_prime_UTR |
| GAGTGCTAGAGCAGTGGTGC+TGG | 0.451158 | 1_1:-50637986 | Msa0026690:five_prime_UTR |
| TAATAGATGATAATGTTAGA+AGG | 0.453601 | 1_1:-50634780 | Msa0026690:intron |
| GGCAGCTCTGCAGGCTGTGA+TGG | 0.460096 | 1_1:-50633879 | Msa0026690:CDS |
| CAGAATTTGAGGGAGGGGAG+TGG | 0.461437 | 1_1:-50638564 | Msa0026690:five_prime_UTR |
| TACACAAGCTTCTAAACCAC+AGG | 0.464474 | 1_1:-50637929 | Msa0026690:five_prime_UTR |
| GGCAATTGATAGCAGAATTG+AGG | 0.470513 | 1_1:-50638814 | Msa0026690:five_prime_UTR |
| TTTCTTTATTGGTCATGTGT+TGG | 0.477666 | 1_1:+50638720 | None:intergenic |
| TTTGGTTCAATATGGTAATG+AGG | 0.482030 | 1_1:-50640042 | Msa0026690:five_prime_UTR |
| TGATGCAGATGGAAAGAAGA+AGG | 0.484697 | 1_1:-50639655 | Msa0026690:five_prime_UTR |
| GATGGAAAGAAGAAGGAAGA+AGG | 0.490833 | 1_1:-50639648 | Msa0026690:five_prime_UTR |
| CATGTGTTGGAGATAATATT+GGG | 0.500890 | 1_1:+50638733 | None:intergenic |
| ATGGAAAGAAGAAGGAAGAA+GGG | 0.501486 | 1_1:-50639647 | Msa0026690:five_prime_UTR |
| AAACAGAACGAGAGAAGGGA+GGG | 0.502519 | 1_1:-50640277 | Msa0026690:five_prime_UTR |
| TTCTGAAGATGCTAAAAGGT+TGG | 0.504212 | 1_1:-50638046 | Msa0026690:five_prime_UTR |
| TTAGGTGGTATAGGTACAAA+GGG | 0.506162 | 1_1:-50638229 | Msa0026690:intron |
| CCAGCTGAGACATGCACTGT+GGG | 0.507614 | 1_1:+50633956 | None:intergenic |
| CTGTCAGGATGTGGATGGAC+TGG | 0.508897 | 1_1:-50637697 | Msa0026690:intron |
| GGAGTCGGCTTTGTAGGAAC+AGG | 0.511221 | 1_1:+50633917 | None:intergenic |
| GTAATCATGGGATCTTAATA+CGG | 0.512460 | 1_1:-50639688 | Msa0026690:five_prime_UTR |
| GAGACATGCACTGTGGGAGC+AGG | 0.513136 | 1_1:+50633962 | None:intergenic |
| GAAGCATTGTCAGCTCCAAT+TGG | 0.513583 | 1_1:-50634510 | Msa0026690:CDS |
| TAGGATATGAAACTTTGAAC+GGG | 0.513709 | 1_1:-50639096 | Msa0026690:five_prime_UTR |
| CTGTTCATTTATCTCGTCCA+TGG | 0.520922 | 1_1:+50634557 | None:intergenic |
| GGGAATGCATTGTTCAAAGC+TGG | 0.521453 | 1_1:-50639627 | Msa0026690:intron |
| AGCAGTGGTGCTGGGAATTG+GGG | 0.521566 | 1_1:-50637977 | Msa0026690:five_prime_UTR |
| ATTGCTGCATCAGCCAAGTA+AGG | 0.523393 | 1_1:-50637643 | Msa0026690:intron |
| GAAACTGGTACCAAAACGTC+CGG | 0.523416 | 1_1:+50639527 | None:intergenic |
| TTTGTAGGAACAGGACGTGC+AGG | 0.524922 | 1_1:+50633926 | None:intergenic |
| TCTTACTGTCAGGATGTGGA+TGG | 0.524962 | 1_1:-50637702 | Msa0026690:intron |
| CCACAGTGCATGTCTCAGCT+GGG | 0.525773 | 1_1:-50633955 | Msa0026690:CDS |
| GCTGCCAATTCATCTTCCTC+AGG | 0.526016 | 1_1:+50633896 | None:intergenic |
| CGCATCTACTGTTTCCGTGG+TGG | 0.528888 | 1_1:+50634749 | None:intergenic |
| TTTAGGTGGTATAGGTACAA+AGG | 0.530695 | 1_1:-50638230 | Msa0026690:intron |
| AACAGGAGCAACTACTATGA+AGG | 0.534991 | 1_1:-50634721 | Msa0026690:CDS |
| TGATTGTGTAGGTATGAAGA+GGG | 0.537685 | 1_1:-50639738 | Msa0026690:five_prime_UTR |
| ACTTTGAACGGGAACTCCTC+AGG | 0.540622 | 1_1:-50639085 | Msa0026690:five_prime_UTR |
| TGTGGATGGACTGGTGGAAG+AGG | 0.543368 | 1_1:-50637688 | Msa0026690:CDS |
| AGAAGAAGAAAAGAAGCTGA+TGG | 0.547081 | 1_1:-50640249 | Msa0026690:five_prime_UTR |
| AATTCATCTTCCTCAGGAGT+CGG | 0.548839 | 1_1:+50633902 | None:intergenic |
| CACACAAGGGAGACATAGAA+AGG | 0.553462 | 1_1:+50638680 | None:intergenic |
| CAATATGGTAATGAGGAACA+AGG | 0.557967 | 1_1:-50640035 | Msa0026690:five_prime_UTR |
| AATGAAATCCACCAAATGAA+AGG | 0.559194 | 1_1:+50638644 | None:intergenic |
| TAACGCATCTACTGTTTCCG+TGG | 0.562190 | 1_1:+50634746 | None:intergenic |
| TTGATTGTGTAGGTATGAAG+AGG | 0.565183 | 1_1:-50639739 | Msa0026690:five_prime_UTR |
| ATCTAGAATCTCATGCATGT+TGG | 0.566933 | 1_1:-50640079 | Msa0026690:five_prime_UTR |
| GTCTAAACAATCTGAACCAA+AGG | 0.568231 | 1_1:-50638159 | Msa0026690:intron |
| AGTGCTAGAGCAGTGGTGCT+GGG | 0.572493 | 1_1:-50637985 | Msa0026690:five_prime_UTR |
| AAAACAGAACGAGAGAAGGG+AGG | 0.577096 | 1_1:-50640278 | Msa0026690:five_prime_UTR |
| AGAAGAAAAGAAGCTGATGG+AGG | 0.581048 | 1_1:-50640246 | Msa0026690:intron |
| AGGTACAAAGGGAATGATGA+TGG | 0.582511 | 1_1:-50638218 | Msa0026690:five_prime_UTR |
| GAAGAGAAGATTGATGCAGA+TGG | 0.586097 | 1_1:-50639666 | Msa0026690:five_prime_UTR |
| ATCTTAATATACATCATGCT+AGG | 0.590673 | 1_1:+50639264 | None:intergenic |
| TGAGAAGGAGAAATTTGAAG+AGG | 0.591853 | 1_1:-50638520 | Msa0026690:intron |
| AATTGTGCAATCAAATAGCA+TGG | 0.592368 | 1_1:+50637901 | None:intergenic |
| GATGGTACTGATCAAGTTAG+TGG | 0.592941 | 1_1:-50638200 | Msa0026690:five_prime_UTR |
| AAATCATGTGCAAAATGAGA+AGG | 0.599565 | 1_1:-50638535 | Msa0026690:five_prime_UTR |
| ATTAGTGTAAGTGTAATCAT+GGG | 0.602992 | 1_1:-50639700 | Msa0026690:five_prime_UTR |
| TCCTACAAAGCCGACTCCTG+AGG | 0.617868 | 1_1:-50633912 | Msa0026690:CDS |
| TTGATGTAGAGCATGAACTT+CGG | 0.620484 | 1_1:+50639055 | None:intergenic |
| TCAGGATGTGGATGGACTGG+TGG | 0.623988 | 1_1:-50637694 | Msa0026690:intron |
| AAATAGCATGGTAAAACCTG+TGG | 0.625905 | 1_1:+50637913 | None:intergenic |
| AGTGGTGCTGGGAATTGGGG+AGG | 0.632259 | 1_1:-50637974 | Msa0026690:five_prime_UTR |
| GTAGGATATGAAACTTTGAA+CGG | 0.633860 | 1_1:-50639097 | Msa0026690:five_prime_UTR |
| CCCAGCTGAGACATGCACTG+TGG | 0.640471 | 1_1:+50633955 | None:intergenic |
| GACATAATTGAATTCACACA+AGG | 0.645918 | 1_1:+50638666 | None:intergenic |
| TGATGATGTCGACAAGACCA+TGG | 0.653403 | 1_1:-50634574 | Msa0026690:CDS |
| ACTGGTGGAAGAGGTTCAAG+AGG | 0.653599 | 1_1:-50637679 | Msa0026690:CDS |
| GAACTTCGGCAACGTACCTG+AGG | 0.654438 | 1_1:+50639069 | None:intergenic |
| AATCGAGAGTGCTAGAGCAG+TGG | 0.666858 | 1_1:-50637992 | Msa0026690:five_prime_UTR |
| GGAGCAGGAGCTGTAAATGT+TGG | 0.671498 | 1_1:+50633977 | None:intergenic |
| AATATGGTAATGAGGAACAA+GGG | 0.673181 | 1_1:-50640034 | Msa0026690:five_prime_UTR |
| CAGTGCATGTCTCAGCTGGG+AGG | 0.674111 | 1_1:-50633952 | Msa0026690:CDS |
| AGAAGGTGCTAAAGCCACCA+CGG | 0.700426 | 1_1:-50634763 | Msa0026690:CDS |
| ACATAATTGAATTCACACAA+GGG | 0.726850 | 1_1:+50638667 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAAATAAAAACTTG+AGG | - | chr1_1:50635029-50635048 | Msa0026690:intron | 10.0% |
| !! | AATAAAAAATAAAAACTTGA+GGG | - | chr1_1:50635030-50635049 | Msa0026690:intron | 10.0% |
| !!! | AAATTATTTTTTGAACAAAA+TGG | + | chr1_1:50638973-50638992 | None:intergenic | 10.0% |
| !!! | GATGTATCATTTTTTTAAAA+TGG | - | chr1_1:50635299-50635318 | Msa0026690:intron | 15.0% |
| !!! | AATATTGGGAATTTATTTTA+AGG | + | chr1_1:50635405-50635424 | None:intergenic | 15.0% |
| !!! | TTATTTTCTGTTACTTTAAA+AGG | - | chr1_1:50635679-50635698 | Msa0026690:intron | 15.0% |
| !! | TATAAACTTAAAAATCATGA+GGG | + | chr1_1:50635816-50635835 | None:intergenic | 15.0% |
| !! | TTTCATTTATATATTCACAT+TGG | - | chr1_1:50636588-50636607 | Msa0026690:intron | 15.0% |
| !!! | ATTTTTTTACTTGATGATTT+TGG | - | chr1_1:50638594-50638613 | Msa0026690:five_prime_UTR | 15.0% |
| !!! | CTTTTCATTAAATTTTGTTT+TGG | - | chr1_1:50639881-50639900 | Msa0026690:five_prime_UTR | 15.0% |
| !! | TTGAAATAATAACATTAAAC+AGG | - | chr1_1:50639927-50639946 | Msa0026690:five_prime_UTR | 15.0% |
| !! | TGAAATAATAACATTAAACA+GGG | - | chr1_1:50639928-50639947 | Msa0026690:five_prime_UTR | 15.0% |
| !!! | TTGATGTTGAATTATTTTCT+GGG | - | chr1_1:50634192-50634211 | Msa0026690:intron | 20.0% |
| !!! | AATGATTTTATTTGATGCTA+TGG | - | chr1_1:50634584-50634603 | Msa0026690:intron | 20.0% |
| !! | ATCAAAACAACTTATATTCA+TGG | + | chr1_1:50634721-50634740 | None:intergenic | 20.0% |
| !!! | ATATAAGTTGTTTTGAAGTT+TGG | - | chr1_1:50634802-50634821 | Msa0026690:intron | 20.0% |
| !! | TTTCAACTTAATGAATTTAG+TGG | + | chr1_1:50634967-50634986 | None:intergenic | 20.0% |
| !!! | CAAATAGGTATTTTCTATAA+AGG | - | chr1_1:50635114-50635133 | Msa0026690:intron | 20.0% |
| !! | CATCATAAAAGCTAAAATAT+AGG | + | chr1_1:50635283-50635302 | None:intergenic | 20.0% |
| !!! | TAAAATGGTTTTTGAAGAAT+TGG | - | chr1_1:50635314-50635333 | Msa0026690:intron | 20.0% |
| !!! | CATAGAAAGATTTTCTTTAT+TGG | + | chr1_1:50635443-50635462 | None:intergenic | 20.0% |
| !!! | GTTACTATAGTTATCTTTTT+TGG | - | chr1_1:50635546-50635565 | Msa0026690:intron | 20.0% |
| !!! | ATTTCTTTTTTCAGAATTTG+AGG | - | chr1_1:50635574-50635593 | Msa0026690:intron | 20.0% |
| !!! | TTTCTTTTTTCAGAATTTGA+GGG | - | chr1_1:50635575-50635594 | Msa0026690:intron | 20.0% |
| !! | CTATAAACTTAAAAATCATG+AGG | + | chr1_1:50635817-50635836 | None:intergenic | 20.0% |
| !!! | TTAATTTTTGCAACTTGATA+TGG | - | chr1_1:50635857-50635876 | Msa0026690:intron | 20.0% |
| !! | TGAATATATAAATGAAAGAG+AGG | + | chr1_1:50636585-50636604 | None:intergenic | 20.0% |
| !!! | TCTTTTATATCTTCATTACT+TGG | - | chr1_1:50636691-50636710 | Msa0026690:intron | 20.0% |
| !! | CTAGCAATGAAAAATAAATA+TGG | - | chr1_1:50636762-50636781 | Msa0026690:intron | 20.0% |
| !! | ATCATCATCAAAATTGTTAA+TGG | - | chr1_1:50636853-50636872 | Msa0026690:intron | 20.0% |
| !! | ATATATGTTGAACTTTATGT+GGG | - | chr1_1:50637355-50637374 | Msa0026690:intron | 20.0% |
| !!! | AAATTCAAATTGTGTTGTTT+TGG | - | chr1_1:50637686-50637705 | Msa0026690:CDS | 20.0% |
| !!! | ATTTGTCTTATTTTTGTGTT+TGG | - | chr1_1:50637734-50637753 | Msa0026690:intron | 20.0% |
| !! | AAAATAACCAACGATATTAT+TGG | + | chr1_1:50637904-50637923 | None:intergenic | 20.0% |
| !!! | GTTATGGTAATTTGATTTTA+GGG | - | chr1_1:50637945-50637964 | Msa0026690:five_prime_UTR | 20.0% |
| !! | TAAAATTGATACAATGTTGT+TGG | - | chr1_1:50638151-50638170 | Msa0026690:intron | 20.0% |
| !! | TTGTTTCACAAATTAAAAAC+AGG | + | chr1_1:50638290-50638309 | None:intergenic | 20.0% |
| !! | TAATTTAAATCACCTGTTAT+TGG | + | chr1_1:50638758-50638777 | None:intergenic | 20.0% |
| !!! | TAATAGATGATAATGTTAGA+AGG | - | chr1_1:50639369-50639388 | Msa0026690:five_prime_UTR | 20.0% |
| !! | GTGATATATTTAATTGAGTT+TGG | - | chr1_1:50639528-50639547 | Msa0026690:five_prime_UTR | 20.0% |
| !!! | TTTTTGCTTATAATTAAGTC+TGG | + | chr1_1:50639766-50639785 | None:intergenic | 20.0% |
| !! | CTTGATGTTGAATTATTTTC+TGG | - | chr1_1:50634191-50634210 | Msa0026690:intron | 25.0% |
| !! | TTGCATGTGATTTATGTTTT+GGG | - | chr1_1:50634234-50634253 | Msa0026690:intron | 25.0% |
| ! | TGTTCATCACAACAAATATT+AGG | - | chr1_1:50634282-50634301 | Msa0026690:intron | 25.0% |
| !!! | TTTTGTGATTTTGATTGTGT+AGG | - | chr1_1:50634400-50634419 | Msa0026690:intron | 25.0% |
| ! | ATTAGTGTAAGTGTAATCAT+GGG | - | chr1_1:50634449-50634468 | Msa0026690:intron | 25.0% |
| !! | ATGGTTAGTTAACAAAATTC+CGG | - | chr1_1:50634603-50634622 | Msa0026690:intron | 25.0% |
| !!! | TAGGTATTTTTAAGTTGCTA+AGG | - | chr1_1:50634768-50634787 | Msa0026690:CDS | 25.0% |
| ! | ATCTTAATATACATCATGCT+AGG | + | chr1_1:50634888-50634907 | None:intergenic | 25.0% |
| ! | AAAAATAAAAACTTGAGGGT+AGG | - | chr1_1:50635034-50635053 | Msa0026690:intron | 25.0% |
| ! | ATGCAAGTAGCAAAATTTAT+AGG | - | chr1_1:50635145-50635164 | Msa0026690:intron | 25.0% |
| ! | TGCAAGTAGCAAAATTTATA+GGG | - | chr1_1:50635146-50635165 | Msa0026690:intron | 25.0% |
| ! | ACATAATTGAATTCACACAA+GGG | + | chr1_1:50635485-50635504 | None:intergenic | 25.0% |
| ! | TTCAATTATGTCCTTTCATT+TGG | - | chr1_1:50635494-50635513 | Msa0026690:intron | 25.0% |
| !!! | CTATAGTTATCTTTTTTGGT+AGG | - | chr1_1:50635550-50635569 | Msa0026690:intron | 25.0% |
| ! | ATTTGAAGAGGTAATTCTTA+TGG | - | chr1_1:50635641-50635660 | Msa0026690:intron | 25.0% |
| !! | CAAGCTTAAGTTGTTAATTT+GGG | - | chr1_1:50635880-50635899 | Msa0026690:intron | 25.0% |
| !!! | GTTACTTTGTATTGTGTTTT+AGG | - | chr1_1:50635902-50635921 | Msa0026690:intron | 25.0% |
| !!! | TGATTCCATTTTTGTTCTAT+AGG | - | chr1_1:50636079-50636098 | Msa0026690:intron | 25.0% |
| ! | TTGTAGATAACAGTAACAAA+TGG | + | chr1_1:50636556-50636575 | None:intergenic | 25.0% |
| ! | GAACAAAAACATAGATCATA+TGG | + | chr1_1:50637197-50637216 | None:intergenic | 25.0% |
| ! | CATATATGTTGAACTTTATG+TGG | - | chr1_1:50637354-50637373 | Msa0026690:intron | 25.0% |
| ! | ATGTAAATATTACTGTTTGC+AGG | - | chr1_1:50637456-50637475 | Msa0026690:intron | 25.0% |
| ! | TTTATGCAGTTATCTATTCA+AGG | - | chr1_1:50637500-50637519 | Msa0026690:intron | 25.0% |
| ! | GTATTCACTCTTAATATCAT+TGG | + | chr1_1:50637848-50637867 | None:intergenic | 25.0% |
| ! | AAGAAAACCAATAATATCGT+TGG | - | chr1_1:50637894-50637913 | Msa0026690:CDS | 25.0% |
| !!! | ATATCGTTGGTTATTTTTTG+AGG | - | chr1_1:50637907-50637926 | Msa0026690:exon | 25.0% |
| !!! | TATCGTTGGTTATTTTTTGA+GGG | - | chr1_1:50637908-50637927 | Msa0026690:exon | 25.0% |
| ! | TTTGAGGGAAATAATATTGT+TGG | - | chr1_1:50637923-50637942 | Msa0026690:five_prime_UTR | 25.0% |
| !! | GGAAATAATATTGTTGGTTA+TGG | - | chr1_1:50637929-50637948 | Msa0026690:five_prime_UTR | 25.0% |
| !!! | GGTTATGGTAATTTGATTTT+AGG | - | chr1_1:50637944-50637963 | Msa0026690:five_prime_UTR | 25.0% |
| !! | TTTTACGTGTCTTCAAATTT+AGG | - | chr1_1:50638036-50638055 | Msa0026690:five_prime_UTR | 25.0% |
| ! | AAATCAAAACAGAAGTGATA+AGG | + | chr1_1:50638207-50638226 | None:intergenic | 25.0% |
| ! | TGTGAAACAATTCATAGATT+AGG | - | chr1_1:50638300-50638319 | Msa0026690:intron | 25.0% |
| ! | TATTCACCAGATTAATATGT+GGG | - | chr1_1:50638440-50638459 | Msa0026690:intron | 25.0% |
| ! | ATCTATTCCCTTAATTAATG+AGG | - | chr1_1:50638497-50638516 | Msa0026690:intron | 25.0% |
| !!! | CATTTTGATTAAAAGCTGAA+AGG | + | chr1_1:50638715-50638734 | None:intergenic | 25.0% |
| ! | GTATTACTTACTTTAGACAA+TGG | - | chr1_1:50639301-50639320 | Msa0026690:five_prime_UTR | 25.0% |
| !! | TACGTCAAAAAAGTATAATG+TGG | + | chr1_1:50639824-50639843 | None:intergenic | 25.0% |
| TTGGGGTTTATTTCAGAAAT+TGG | - | chr1_1:50634047-50634066 | Msa0026690:intron | 30.0% | |
| !!! | GTGTTGATTTTGGTTCAATA+TGG | - | chr1_1:50634099-50634118 | Msa0026690:intron | 30.0% |
| ! | TTTGGTTCAATATGGTAATG+AGG | - | chr1_1:50634107-50634126 | Msa0026690:intron | 30.0% |
| ! | AATATGGTAATGAGGAACAA+GGG | - | chr1_1:50634115-50634134 | Msa0026690:intron | 30.0% |
| ! | CTTGCATGTGATTTATGTTT+TGG | - | chr1_1:50634233-50634252 | Msa0026690:intron | 30.0% |
| !! | ATGTGATTTATGTTTTGGGT+TGG | - | chr1_1:50634238-50634257 | Msa0026690:intron | 30.0% |
| CATTAGTGTAAGTGTAATCA+TGG | - | chr1_1:50634448-50634467 | Msa0026690:intron | 30.0% | |
| GTAATCATGGGATCTTAATA+CGG | - | chr1_1:50634461-50634480 | Msa0026690:intron | 30.0% | |
| !!! | TGTTTTGATGTGCTAAAGTT+TGG | - | chr1_1:50634732-50634751 | Msa0026690:CDS | 30.0% |
| GTTTGGTATCACTTAACAAT+AGG | - | chr1_1:50634749-50634768 | Msa0026690:CDS | 30.0% | |
| CACATCATATTCATTGCTTT+AGG | + | chr1_1:50634942-50634961 | None:intergenic | 30.0% | |
| GTAGGATATGAAACTTTGAA+CGG | - | chr1_1:50635052-50635071 | Msa0026690:intron | 30.0% | |
| TAGGATATGAAACTTTGAAC+GGG | - | chr1_1:50635053-50635072 | Msa0026690:intron | 30.0% | |
| CATATTGCCGTAACAAAAAT+AGG | - | chr1_1:50635215-50635234 | Msa0026690:intron | 30.0% | |
| !!! | TGTCAAGCCTATTTTTGTTA+CGG | + | chr1_1:50635225-50635244 | None:intergenic | 30.0% |
| !!! | TTTATTTTAAGGCGAGCAAT+TGG | + | chr1_1:50635394-50635413 | None:intergenic | 30.0% |
| CATGTGTTGGAGATAATATT+GGG | + | chr1_1:50635419-50635438 | None:intergenic | 30.0% | |
| TCATGTGTTGGAGATAATAT+TGG | + | chr1_1:50635420-50635439 | None:intergenic | 30.0% | |
| TTTCTTTATTGGTCATGTGT+TGG | + | chr1_1:50635432-50635451 | None:intergenic | 30.0% | |
| GACATAATTGAATTCACACA+AGG | + | chr1_1:50635486-50635505 | None:intergenic | 30.0% | |
| AATTATGTCCTTTCATTTGG+TGG | - | chr1_1:50635497-50635516 | Msa0026690:intron | 30.0% | |
| AATGAAATCCACCAAATGAA+AGG | + | chr1_1:50635508-50635527 | None:intergenic | 30.0% | |
| !! | ATTTGGTGGATTTCATTTCA+TGG | - | chr1_1:50635511-50635530 | Msa0026690:intron | 30.0% |
| !!! | TTTTTTCAGAATTTGAGGGA+GGG | - | chr1_1:50635579-50635598 | Msa0026690:intron | 30.0% |
| AAATCATGTGCAAAATGAGA+AGG | - | chr1_1:50635614-50635633 | Msa0026690:intron | 30.0% | |
| TAGAGTGAATAGATCCATTA+AGG | - | chr1_1:50635759-50635778 | Msa0026690:intron | 30.0% | |
| ! | GCAAGCTTAAGTTGTTAATT+TGG | - | chr1_1:50635879-50635898 | Msa0026690:intron | 30.0% |
| !! | ACTTTGTATTGTGTTTTAGG+TGG | - | chr1_1:50635905-50635924 | Msa0026690:intron | 30.0% |
| !! | TATTGTGTTTTAGGTGGTAT+AGG | - | chr1_1:50635911-50635930 | Msa0026690:intron | 30.0% |
| ! | TATTGTTGTAGCACTTTTGA+TGG | - | chr1_1:50636046-50636065 | Msa0026690:intron | 30.0% |
| AGAAGCCTATAGAACAAAAA+TGG | + | chr1_1:50636087-50636106 | None:intergenic | 30.0% | |
| AATTGTGCAATCAAATAGCA+TGG | + | chr1_1:50636251-50636270 | None:intergenic | 30.0% | |
| AGTTAACGTAACATAATAGC+TGG | + | chr1_1:50636403-50636422 | None:intergenic | 30.0% | |
| ! | TTTTGTGTTTTCTTACTGTC+AGG | - | chr1_1:50636437-50636456 | Msa0026690:intron | 30.0% |
| ATTAAGCAATGTACCTTACT+TGG | + | chr1_1:50636522-50636541 | None:intergenic | 30.0% | |
| TCATTACTTGGACTATGAAT+AGG | - | chr1_1:50636703-50636722 | Msa0026690:intron | 30.0% | |
| CATTACTTGGACTATGAATA+GGG | - | chr1_1:50636704-50636723 | Msa0026690:intron | 30.0% | |
| TTGATTATTGTGTCTTTGTC+TGG | - | chr1_1:50636964-50636983 | Msa0026690:intron | 30.0% | |
| !! | AAATCTCTGGAATGTAAGAT+TGG | - | chr1_1:50637017-50637036 | Msa0026690:intron | 30.0% |
| TAACAGCAAGAATTAGACAT+TGG | + | chr1_1:50637089-50637108 | None:intergenic | 30.0% | |
| !! | GATCTATGTTTTTGTTCTTC+CGG | - | chr1_1:50637200-50637219 | Msa0026690:intron | 30.0% |
| TCTAGCATTATGCATTGTTT+GGG | - | chr1_1:50637241-50637260 | Msa0026690:intron | 30.0% | |
| ! | TTTTCTTGAAGCACAAAACT+GGG | + | chr1_1:50637275-50637294 | None:intergenic | 30.0% |
| ! | ATTTTCTTGAAGCACAAAAC+TGG | + | chr1_1:50637276-50637295 | None:intergenic | 30.0% |
| CTCTATACCATCATTTAATC+AGG | - | chr1_1:50637409-50637428 | Msa0026690:intron | 30.0% | |
| TACCATCATTTAATCAGGTT+TGG | - | chr1_1:50637414-50637433 | Msa0026690:intron | 30.0% | |
| TTCCAAACCTGATTAAATGA+TGG | + | chr1_1:50637419-50637438 | None:intergenic | 30.0% | |
| ! | AGCCAATACAATTTTCTTCT+AGG | - | chr1_1:50637575-50637594 | Msa0026690:intron | 30.0% |
| GTCCTAGAAGAAAATTGTAT+TGG | + | chr1_1:50637580-50637599 | None:intergenic | 30.0% | |
| !! | TTCTTCTAGGACAATGAAAT+TGG | - | chr1_1:50637588-50637607 | Msa0026690:intron | 30.0% |
| !! | ACAATGAAATTGGTAGTGAA+TGG | - | chr1_1:50637598-50637617 | Msa0026690:intron | 30.0% |
| !!! | ATTGTGTTGTTTTGGTCATT+TGG | - | chr1_1:50637694-50637713 | Msa0026690:intron | 30.0% |
| ACTATGTATAAACCCAAATG+TGG | - | chr1_1:50638258-50638277 | Msa0026690:intron | 30.0% | |
| TTTGTGAAAAGAATTGTCCA+TGG | - | chr1_1:50638336-50638355 | Msa0026690:intron | 30.0% | |
| GTATTCACCAGATTAATATG+TGG | - | chr1_1:50638439-50638458 | Msa0026690:intron | 30.0% | |
| ATTCACCAGATTAATATGTG+GGG | - | chr1_1:50638441-50638460 | Msa0026690:intron | 30.0% | |
| TATTCCCTTAATTAATGAGG+TGG | - | chr1_1:50638500-50638519 | Msa0026690:intron | 30.0% | |
| AAGTCCACCTCATTAATTAA+GGG | + | chr1_1:50638507-50638526 | None:intergenic | 30.0% | |
| !! | AGTTTAAGTTGCTCTAAATG+GGG | + | chr1_1:50638563-50638582 | None:intergenic | 30.0% |
| !! | GAGTTTAAGTTGCTCTAAAT+GGG | + | chr1_1:50638564-50638583 | None:intergenic | 30.0% |
| !! | AGAGTTTAAGTTGCTCTAAA+TGG | + | chr1_1:50638565-50638584 | None:intergenic | 30.0% |
| TTTGGATGTACCAATTGATT+AGG | - | chr1_1:50638612-50638631 | Msa0026690:five_prime_UTR | 30.0% | |
| ATATAGAGAGCCTAATCAAT+TGG | + | chr1_1:50638625-50638644 | None:intergenic | 30.0% | |
| ATTAAAAGCTGAAAGGATAG+CGG | + | chr1_1:50638708-50638727 | None:intergenic | 30.0% | |
| GCATAAAAGTTTCCAATAAC+AGG | - | chr1_1:50638743-50638762 | Msa0026690:five_prime_UTR | 30.0% | |
| TTTATAACATAAGCTGCAGT+TGG | - | chr1_1:50639030-50639049 | Msa0026690:five_prime_UTR | 30.0% | |
| CAAGAAAGAAAGAATATACC+AGG | - | chr1_1:50639084-50639103 | Msa0026690:five_prime_UTR | 30.0% | |
| TAGAACCACTCTGATTAATA+GGG | + | chr1_1:50639118-50639137 | None:intergenic | 30.0% | |
| ATAGAACCACTCTGATTAAT+AGG | + | chr1_1:50639119-50639138 | None:intergenic | 30.0% | |
| ! | AGTTGAGAAATGTACTCTTT+TGG | - | chr1_1:50639143-50639162 | Msa0026690:five_prime_UTR | 30.0% |
| ! | TTTTTCCTTAATACCCAACT+TGG | + | chr1_1:50639265-50639284 | None:intergenic | 30.0% |
| ! | TAATCTTCTTTTTCCCCTTA+TGG | - | chr1_1:50639334-50639353 | Msa0026690:five_prime_UTR | 30.0% |
| TACAAAAATCACCACCATAA+GGG | + | chr1_1:50639351-50639370 | None:intergenic | 30.0% | |
| TTACAAAAATCACCACCATA+AGG | + | chr1_1:50639352-50639371 | None:intergenic | 30.0% | |
| !!! | TTGGTTCTGTTTCTTTTTAC+AGG | - | chr1_1:50639547-50639566 | Msa0026690:five_prime_UTR | 30.0% |
| TTGTTATGTCAGTTGAAAAC+AGG | - | chr1_1:50639709-50639728 | Msa0026690:five_prime_UTR | 30.0% | |
| ! | TTTGGAACATATTTCATCGA+AGG | - | chr1_1:50639899-50639918 | Msa0026690:five_prime_UTR | 30.0% |
| ! | ATTTTGTCTATATTGAGTCC+AGG | - | chr1_1:50639964-50639983 | Msa0026690:five_prime_UTR | 30.0% |
| ! | TTTTGTCTATATTGAGTCCA+GGG | - | chr1_1:50639965-50639984 | Msa0026690:five_prime_UTR | 30.0% |
| TTTCAGATTGAACACATGTT+TGG | + | chr1_1:50640025-50640044 | None:intergenic | 30.0% | |
| ! | ATGTGTTCAATCTGAAATGT+TGG | - | chr1_1:50640028-50640047 | Msa0026690:five_prime_UTR | 30.0% |
| AATAAATTCAGAATGCCACA+TGG | + | chr1_1:50640078-50640097 | None:intergenic | 30.0% | |
| AGAAGAAGAAAAGAAGCTGA+TGG | - | chr1_1:50633900-50633919 | Msa0026690:CDS | 35.0% | |
| AGGGAAATTACTAACATGCA+AGG | - | chr1_1:50633930-50633949 | Msa0026690:CDS | 35.0% | |
| ! | CTTTTCTCTATTCTGCTCTT+GGG | - | chr1_1:50634029-50634048 | Msa0026690:intron | 35.0% |
| ! | TTTTCTCTATTCTGCTCTTG+GGG | - | chr1_1:50634030-50634049 | Msa0026690:intron | 35.0% |
| ! | ATCTAGAATCTCATGCATGT+TGG | - | chr1_1:50634070-50634089 | Msa0026690:intron | 35.0% |
| !!! | TTGGTTTCTGGTGTTGATTT+TGG | - | chr1_1:50634089-50634108 | Msa0026690:intron | 35.0% |
| ! | CAATATGGTAATGAGGAACA+AGG | - | chr1_1:50634114-50634133 | Msa0026690:intron | 35.0% |
| !!! | TTGGGTTGGAATTTTGATTC+TGG | - | chr1_1:50634252-50634271 | Msa0026690:intron | 35.0% |
| TTGATTGTGTAGGTATGAAG+AGG | - | chr1_1:50634410-50634429 | Msa0026690:intron | 35.0% | |
| TGATTGTGTAGGTATGAAGA+GGG | - | chr1_1:50634411-50634430 | Msa0026690:intron | 35.0% | |
| ATGGAAAGAAGAAGGAAGAA+GGG | - | chr1_1:50634502-50634521 | Msa0026690:CDS | 35.0% | |
| ! | TAACAAAATTCCGGACGTTT+TGG | - | chr1_1:50634612-50634631 | Msa0026690:intron | 35.0% |
| !!! | GGTACCAGTTTCATTGATTT+TGG | - | chr1_1:50634633-50634652 | Msa0026690:intron | 35.0% |
| TGGACCAAAATCAATGAAAC+TGG | + | chr1_1:50634640-50634659 | None:intergenic | 35.0% | |
| !!! | TCTGTAGACGATTTTGAAGT+TGG | - | chr1_1:50634669-50634688 | Msa0026690:intron | 35.0% |
| !!! | CTGTAGACGATTTTGAAGTT+GGG | - | chr1_1:50634670-50634689 | Msa0026690:intron | 35.0% |
| !!! | TGTAGACGATTTTGAAGTTG+GGG | - | chr1_1:50634671-50634690 | Msa0026690:intron | 35.0% |
| TTGATGTAGAGCATGAACTT+CGG | + | chr1_1:50635097-50635116 | None:intergenic | 35.0% | |
| GTTCATGCTCTACATCAAAT+AGG | - | chr1_1:50635099-50635118 | Msa0026690:intron | 35.0% | |
| CGAGCAATTGGTTAAATTTC+TGG | + | chr1_1:50635382-50635401 | None:intergenic | 35.0% | |
| ! | CATTTCATGGTTTGTGACTA+TGG | - | chr1_1:50635524-50635543 | Msa0026690:intron | 35.0% |
| !!! | CTTTTTTCAGAATTTGAGGG+AGG | - | chr1_1:50635578-50635597 | Msa0026690:intron | 35.0% |
| !! | TTTTTCAGAATTTGAGGGAG+GGG | - | chr1_1:50635580-50635599 | Msa0026690:intron | 35.0% |
| ! | CTCATTTTGCACATGATTTG+AGG | + | chr1_1:50635613-50635632 | None:intergenic | 35.0% |
| TGAGAAGGAGAAATTTGAAG+AGG | - | chr1_1:50635629-50635648 | Msa0026690:intron | 35.0% | |
| AAACTTGACGTGTTCTTGAT+AGG | - | chr1_1:50635731-50635750 | Msa0026690:intron | 35.0% | |
| TTTAGGTGGTATAGGTACAA+AGG | - | chr1_1:50635919-50635938 | Msa0026690:intron | 35.0% | |
| TTAGGTGGTATAGGTACAAA+GGG | - | chr1_1:50635920-50635939 | Msa0026690:intron | 35.0% | |
| GTCTAAACAATCTGAACCAA+AGG | - | chr1_1:50635990-50636009 | Msa0026690:intron | 35.0% | |
| TTAGTGGTGTTTAGTGGTTA+AGG | - | chr1_1:50636013-50636032 | Msa0026690:intron | 35.0% | |
| ! | TTCTGAAGATGCTAAAAGGT+TGG | - | chr1_1:50636103-50636122 | Msa0026690:intron | 35.0% |
| AAATAGCATGGTAAAACCTG+TGG | + | chr1_1:50636239-50636258 | None:intergenic | 35.0% | |
| !! | TCTAATTCTTGCTGTTACTG+AGG | - | chr1_1:50637092-50637111 | Msa0026690:intron | 35.0% |
| !! | ATGTTTTTGTTCTTCCGGAA+AGG | - | chr1_1:50637205-50637224 | Msa0026690:intron | 35.0% |
| CTCTAGCATTATGCATTGTT+TGG | - | chr1_1:50637240-50637259 | Msa0026690:intron | 35.0% | |
| CAAAGAGCTCTTTACTCTTT+AGG | + | chr1_1:50638095-50638114 | None:intergenic | 35.0% | |
| CAAGTCCACCTCATTAATTA+AGG | + | chr1_1:50638508-50638527 | None:intergenic | 35.0% | |
| ! | AATTAATGAGGTGGACTTGA+AGG | - | chr1_1:50638509-50638528 | Msa0026690:intron | 35.0% |
| CTCAACACAATTAATCAGAG+TGG | + | chr1_1:50638652-50638671 | None:intergenic | 35.0% | |
| TGTTCAACATCTTGATATGC+AGG | + | chr1_1:50638886-50638905 | None:intergenic | 35.0% | |
| GTACAATTCACATTCTTCGA+AGG | + | chr1_1:50638919-50638938 | None:intergenic | 35.0% | |
| AAGAAACTTCTGCATTGTGT+AGG | + | chr1_1:50639012-50639031 | None:intergenic | 35.0% | |
| ACAAAAATCACCACCATAAG+GGG | + | chr1_1:50639350-50639369 | None:intergenic | 35.0% | |
| TAAGTCTGGAGAGAATCAAA+AGG | + | chr1_1:50639752-50639771 | None:intergenic | 35.0% | |
| AACATTAAACAGGGTGAAGT+TGG | - | chr1_1:50639937-50639956 | Msa0026690:five_prime_UTR | 35.0% | |
| AGAAGAAAAGAAGCTGATGG+AGG | - | chr1_1:50633903-50633922 | Msa0026690:CDS | 40.0% | |
| GAGGGAAGAAATGAGGAAAA+TGG | + | chr1_1:50633999-50634018 | None:intergenic | 40.0% | |
| TTTCCTCATTTCTTCCCTCT+AGG | - | chr1_1:50634000-50634019 | Msa0026690:intron | 40.0% | |
| TTCCTCATTTCTTCCCTCTA+GGG | - | chr1_1:50634001-50634020 | Msa0026690:intron | 40.0% | |
| ! | GCTTTTCTCTATTCTGCTCT+TGG | - | chr1_1:50634028-50634047 | Msa0026690:intron | 40.0% |
| !! | ATCTCATGCATGTTGGTTTC+TGG | - | chr1_1:50634077-50634096 | Msa0026690:intron | 40.0% |
| ! | GAGCTAATGTCATGCTTTTC+AGG | - | chr1_1:50634142-50634161 | Msa0026690:intron | 40.0% |
| GAAGAGAAGATTGATGCAGA+TGG | - | chr1_1:50634483-50634502 | Msa0026690:intron | 40.0% | |
| TGATGCAGATGGAAAGAAGA+AGG | - | chr1_1:50634494-50634513 | Msa0026690:CDS | 40.0% | |
| GATGGAAAGAAGAAGGAAGA+AGG | - | chr1_1:50634501-50634520 | Msa0026690:CDS | 40.0% | |
| TCGTCTACAGACTTCAAATC+TGG | + | chr1_1:50634660-50634679 | None:intergenic | 40.0% | |
| !!! | GTAGACGATTTTGAAGTTGG+GGG | - | chr1_1:50634672-50634691 | Msa0026690:intron | 40.0% |
| ! | GGCAATTGATAGCAGAATTG+AGG | - | chr1_1:50635335-50635354 | Msa0026690:intron | 40.0% |
| AGGTACAAAGGGAATGATGA+TGG | - | chr1_1:50635931-50635950 | Msa0026690:intron | 40.0% | |
| !! | GATGGTACTGATCAAGTTAG+TGG | - | chr1_1:50635949-50635968 | Msa0026690:intron | 40.0% |
| CAATCTGAACCAAAGGTTAG+TGG | - | chr1_1:50635997-50636016 | Msa0026690:intron | 40.0% | |
| CACTAAACACCACTAACCTT+TGG | + | chr1_1:50636009-50636028 | None:intergenic | 40.0% | |
| CAAAGGTTAGTGGTGTTTAG+TGG | - | chr1_1:50636007-50636026 | Msa0026690:intron | 40.0% | |
| ! | AGGCTTCTGAAGATGCTAAA+AGG | - | chr1_1:50636099-50636118 | Msa0026690:intron | 40.0% |
| TACACAAGCTTCTAAACCAC+AGG | - | chr1_1:50636220-50636239 | Msa0026690:intron | 40.0% | |
| ! | GTTTTCTTACTGTCAGGATG+TGG | - | chr1_1:50636443-50636462 | Msa0026690:intron | 40.0% |
| TTTAACAGAAGCCTGACCAT+TGG | + | chr1_1:50636908-50636927 | None:intergenic | 40.0% | |
| TGTGCAAGTAGACAAATCTC+TGG | - | chr1_1:50637004-50637023 | Msa0026690:intron | 40.0% | |
| !! | TCTCTGGAATGTAAGATTGG+AGG | - | chr1_1:50637020-50637039 | Msa0026690:intron | 40.0% |
| AATGTAAGATTGGAGGTGAG+TGG | - | chr1_1:50637027-50637046 | Msa0026690:intron | 40.0% | |
| ATGTAAGATTGGAGGTGAGT+GGG | - | chr1_1:50637028-50637047 | Msa0026690:intron | 40.0% | |
| AGATACTATCCATCATCGCA+TGG | + | chr1_1:50637159-50637178 | None:intergenic | 40.0% | |
| AGAGCAAGACAAAACCTTTC+CGG | + | chr1_1:50637222-50637241 | None:intergenic | 40.0% | |
| !! | GCAGTTGCAGTTTGATTTGA+AGG | - | chr1_1:50637296-50637315 | Msa0026690:intron | 40.0% |
| ! | TAGAGGATGCAATGGTGTTT+TGG | + | chr1_1:50637548-50637567 | None:intergenic | 40.0% |
| GAATGGATCGTCTATAACTC+AGG | - | chr1_1:50637615-50637634 | Msa0026690:intron | 40.0% | |
| ! | GTCCATGGCTGATTTAATTG+AGG | - | chr1_1:50638351-50638370 | Msa0026690:intron | 40.0% |
| GAATACACTCATCCTTCTTG+AGG | + | chr1_1:50638425-50638444 | None:intergenic | 40.0% | |
| CTTCTCCCCACATATTAATC+TGG | + | chr1_1:50638449-50638468 | None:intergenic | 40.0% | |
| CAGATTAATATGTGGGGAGA+AGG | - | chr1_1:50638447-50638466 | Msa0026690:intron | 40.0% | |
| GGAGAAGGCTTCAAAAGTAA+CGG | - | chr1_1:50638462-50638481 | Msa0026690:intron | 40.0% | |
| GTGGACTTGAAGGAGAAATA+GGG | - | chr1_1:50638519-50638538 | Msa0026690:intron | 40.0% | |
| TTGAAGGAGAAATAGGGCAA+TGG | - | chr1_1:50638525-50638544 | Msa0026690:five_prime_UTR | 40.0% | |
| ATAGGGCAATGGAACAAAAC+AGG | - | chr1_1:50638536-50638555 | Msa0026690:five_prime_UTR | 40.0% | |
| CGGCAAAATGAATGGTTGAT+TGG | + | chr1_1:50638688-50638707 | None:intergenic | 40.0% | |
| ! | AAGGATAGCGGCAAAATGAA+TGG | + | chr1_1:50638696-50638715 | None:intergenic | 40.0% |
| CTGCATTGTGTAGGAGAATT+TGG | + | chr1_1:50639003-50639022 | None:intergenic | 40.0% | |
| ! | TTGGCAGCAGAAAGTACATA+AGG | + | chr1_1:50639246-50639265 | None:intergenic | 40.0% |
| ! | TCTTCTTTTTCCCCTTATGG+TGG | - | chr1_1:50639337-50639356 | Msa0026690:five_prime_UTR | 40.0% |
| ACAGTAGATGCGTTAAGAAC+AGG | - | chr1_1:50639411-50639430 | Msa0026690:five_prime_UTR | 40.0% | |
| AACAGGAGCAACTACTATGA+AGG | - | chr1_1:50639428-50639447 | Msa0026690:five_prime_UTR | 40.0% | |
| CAACTCGATCGTTAAAGACT+TGG | + | chr1_1:50639495-50639514 | None:intergenic | 40.0% | |
| CTGTTCATTTATCTCGTCCA+TGG | + | chr1_1:50639595-50639614 | None:intergenic | 40.0% | |
| AAATAAGCAGCTGCACCAAT+TGG | + | chr1_1:50639657-50639676 | None:intergenic | 40.0% | |
| TTCGTATATTAGCACTACCC+TGG | + | chr1_1:50639985-50640004 | None:intergenic | 40.0% | |
| !! | CTGAAATGTTGGTGCTACAT+TGG | - | chr1_1:50640039-50640058 | Msa0026690:five_prime_UTR | 40.0% |
| !! | GGTTTTAATGCATGTCCATG+TGG | - | chr1_1:50640060-50640079 | Msa0026690:five_prime_UTR | 40.0% |
| !!! | TTGTTGTTTTCAGCACGAAC+TGG | - | chr1_1:50640096-50640115 | Msa0026690:five_prime_UTR | 40.0% |
| GGAAGCAGAACTTGAAGAAT+TGG | - | chr1_1:50640117-50640136 | Msa0026690:five_prime_UTR | 40.0% | |
| AGAATTGGAGAATGCTGAGT+TGG | - | chr1_1:50640132-50640151 | Msa0026690:five_prime_UTR | 40.0% | |
| AATTCATCTTCCTCAGGAGT+CGG | + | chr1_1:50640250-50640269 | None:intergenic | 40.0% | |
| AAAACAGAACGAGAGAAGGG+AGG | - | chr1_1:50633871-50633890 | Msa0026690:CDS | 45.0% | |
| AAACAGAACGAGAGAAGGGA+GGG | - | chr1_1:50633872-50633891 | Msa0026690:CDS | 45.0% | |
| AAGAAGCTGATGGAGGAAGA+AGG | - | chr1_1:50633910-50633929 | Msa0026690:CDS | 45.0% | |
| AGAAGCTGATGGAGGAAGAA+GGG | - | chr1_1:50633911-50633930 | Msa0026690:CDS | 45.0% | |
| ATGAGGAAAATGGAGCTTGC+TGG | + | chr1_1:50633989-50634008 | None:intergenic | 45.0% | |
| GGGAATGCATTGTTCAAAGC+TGG | - | chr1_1:50634522-50634541 | Msa0026690:CDS | 45.0% | |
| GAAACTGGTACCAAAACGTC+CGG | + | chr1_1:50634625-50634644 | None:intergenic | 45.0% | |
| CACACAAGGGAGACATAGAA+AGG | + | chr1_1:50635472-50635491 | None:intergenic | 45.0% | |
| TGCTATCAGCAACAAGCTTG+CGG | - | chr1_1:50635786-50635805 | Msa0026690:intron | 45.0% | |
| TGCTCTAGCACTCTCGATTT+CGG | + | chr1_1:50636156-50636175 | None:intergenic | 45.0% | |
| TCTTACTGTCAGGATGTGGA+TGG | - | chr1_1:50636447-50636466 | Msa0026690:intron | 45.0% | |
| ATTGCTGCATCAGCCAAGTA+AGG | - | chr1_1:50636506-50636525 | Msa0026690:intron | 45.0% | |
| TGTAAGATTGGAGGTGAGTG+GGG | - | chr1_1:50637029-50637048 | Msa0026690:intron | 45.0% | |
| ! | AATGCTTTTGCAAAGCACGC+AGG | - | chr1_1:50637052-50637071 | Msa0026690:intron | 45.0% |
| !! | TTCTTGCTGTTACTGAGGAG+AGG | - | chr1_1:50637097-50637116 | Msa0026690:intron | 45.0% |
| !! | TCTTGCTGTTACTGAGGAGA+GGG | - | chr1_1:50637098-50637117 | Msa0026690:intron | 45.0% |
| TCGCATGGTCAACGAACAAA+TGG | + | chr1_1:50637144-50637163 | None:intergenic | 45.0% | |
| !! | GGATGCAATGGTGTTTTGGA+AGG | + | chr1_1:50637544-50637563 | None:intergenic | 45.0% |
| ACACCATTGCATCCTCTATC+TGG | - | chr1_1:50637550-50637569 | Msa0026690:intron | 45.0% | |
| CACCATTGCATCCTCTATCT+GGG | - | chr1_1:50637551-50637570 | Msa0026690:intron | 45.0% | |
| TACCCAGATAGAGGATGCAA+TGG | + | chr1_1:50637556-50637575 | None:intergenic | 45.0% | |
| !! | TGTATTGGCTACCCAGATAG+AGG | + | chr1_1:50637565-50637584 | None:intergenic | 45.0% |
| AACAGGCAGCTTCCACATTT+GGG | + | chr1_1:50638273-50638292 | None:intergenic | 45.0% | |
| AAACAGGCAGCTTCCACATT+TGG | + | chr1_1:50638274-50638293 | None:intergenic | 45.0% | |
| CGCCTCAATTAAATCAGCCA+TGG | + | chr1_1:50638356-50638375 | None:intergenic | 45.0% | |
| ! | TGGCTGATTTAATTGAGGCG+TGG | - | chr1_1:50638356-50638375 | Msa0026690:intron | 45.0% |
| TCTTGAGGAAACAAACTGCG+CGG | + | chr1_1:50638410-50638429 | None:intergenic | 45.0% | |
| ! | CGCAGTTTGTTTCCTCAAGA+AGG | - | chr1_1:50638410-50638429 | Msa0026690:intron | 45.0% |
| ! | GGTGGACTTGAAGGAGAAAT+AGG | - | chr1_1:50638518-50638537 | Msa0026690:intron | 45.0% |
| ATTAATAGGGCAGTCTCACC+TGG | + | chr1_1:50639105-50639124 | None:intergenic | 45.0% | |
| GACTGCCCTATTAATCAGAG+TGG | - | chr1_1:50639110-50639129 | Msa0026690:five_prime_UTR | 45.0% | |
| TGTACTTTCTGCTGCCAAGT+TGG | - | chr1_1:50639248-50639267 | Msa0026690:five_prime_UTR | 45.0% | |
| GTACTTTCTGCTGCCAAGTT+GGG | - | chr1_1:50639249-50639268 | Msa0026690:five_prime_UTR | 45.0% | |
| ! | TGCTGCCAAGTTGGGTATTA+AGG | - | chr1_1:50639257-50639276 | Msa0026690:five_prime_UTR | 45.0% |
| TAACGCATCTACTGTTTCCG+TGG | + | chr1_1:50639406-50639425 | None:intergenic | 45.0% | |
| ! | TGATGATGTCGACAAGACCA+TGG | - | chr1_1:50639575-50639594 | Msa0026690:five_prime_UTR | 45.0% |
| !! | GAAGCATTGTCAGCTCCAAT+TGG | - | chr1_1:50639639-50639658 | Msa0026690:five_prime_UTR | 45.0% |
| !!! | TGCAGCTGCTTATTTTGACG+AGG | - | chr1_1:50639662-50639681 | Msa0026690:five_prime_UTR | 45.0% |
| GACTCCTGAGGAAGATGAAT+TGG | - | chr1_1:50640249-50640268 | Msa0026690:five_prime_UTR | 45.0% | |
| !!! | TTTTAAATATCATATTATAA+CGG | + | chr1_1:50635714-50635733 | None:intergenic | 5.0% |
| TTGAAGTTGGGGGCAGAAGT+AGG | - | chr1_1:50634682-50634701 | Msa0026690:intron | 50.0% | |
| ACTTTGAACGGGAACTCCTC+AGG | - | chr1_1:50635064-50635083 | Msa0026690:intron | 50.0% | |
| GCTGATAGCAGGCACCTTAA+TGG | + | chr1_1:50635776-50635795 | None:intergenic | 50.0% | |
| !! | GCAAGCTTGTTGCTGATAGC+AGG | + | chr1_1:50635787-50635806 | None:intergenic | 50.0% |
| !! | AATCGAGAGTGCTAGAGCAG+TGG | - | chr1_1:50636157-50636176 | Msa0026690:intron | 50.0% |
| ACTGGTGGAAGAGGTTCAAG+AGG | - | chr1_1:50636470-50636489 | Msa0026690:intron | 50.0% | |
| GTGCTCTCAGTTAGCTGATG+AGG | + | chr1_1:50636939-50636958 | None:intergenic | 50.0% | |
| GTTCGTTGACCATGCGATGA+TGG | - | chr1_1:50637147-50637166 | Msa0026690:intron | 50.0% | |
| !! | AGAAGGTGCTAAAGCCACCA+CGG | - | chr1_1:50639386-50639405 | Msa0026690:five_prime_UTR | 50.0% |
| GGAGCAGGAGCTGTAAATGT+TGG | + | chr1_1:50640175-50640194 | None:intergenic | 50.0% | |
| TTTGTAGGAACAGGACGTGC+AGG | + | chr1_1:50640226-50640245 | None:intergenic | 50.0% | |
| GCTGCCAATTCATCTTCCTC+AGG | + | chr1_1:50640256-50640275 | None:intergenic | 50.0% | |
| AGATGAATTGGCAGCTCTGC+AGG | - | chr1_1:50640261-50640280 | Msa0026690:five_prime_UTR | 50.0% | |
| CGCCCTAGAGGGAAGAAATG+AGG | + | chr1_1:50634006-50634025 | None:intergenic | 55.0% | |
| GAGAAAAGCTGCGCCCTAGA+GGG | + | chr1_1:50634017-50634036 | None:intergenic | 55.0% | |
| AGAGAAAAGCTGCGCCCTAG+AGG | + | chr1_1:50634018-50634037 | None:intergenic | 55.0% | |
| GAACTTCGGCAACGTACCTG+AGG | + | chr1_1:50635083-50635102 | None:intergenic | 55.0% | |
| CAGAATTTGAGGGAGGGGAG+TGG | - | chr1_1:50635585-50635604 | Msa0026690:intron | 55.0% | |
| AGTGCTAGAGCAGTGGTGCT+GGG | - | chr1_1:50636164-50636183 | Msa0026690:intron | 55.0% | |
| ! | AGAGCAGTGGTGCTGGGAAT+TGG | - | chr1_1:50636170-50636189 | Msa0026690:intron | 55.0% |
| ! | GAGCAGTGGTGCTGGGAATT+GGG | - | chr1_1:50636171-50636190 | Msa0026690:intron | 55.0% |
| ! | AGCAGTGGTGCTGGGAATTG+GGG | - | chr1_1:50636172-50636191 | Msa0026690:intron | 55.0% |
| CTGTCAGGATGTGGATGGAC+TGG | - | chr1_1:50636452-50636471 | Msa0026690:intron | 55.0% | |
| !! | TCAGGATGTGGATGGACTGG+TGG | - | chr1_1:50636455-50636474 | Msa0026690:intron | 55.0% |
| !! | TGTGGATGGACTGGTGGAAG+AGG | - | chr1_1:50636461-50636480 | Msa0026690:intron | 55.0% |
| TTCAACGCAGCTCCTGCCAA+TGG | - | chr1_1:50636889-50636908 | Msa0026690:intron | 55.0% | |
| ACAGAAGCCTGACCATTGGC+AGG | + | chr1_1:50636904-50636923 | None:intergenic | 55.0% | |
| GAGGAAACAAACTGCGCGGA+CGG | + | chr1_1:50638406-50638425 | None:intergenic | 55.0% | |
| CGCATCTACTGTTTCCGTGG+TGG | + | chr1_1:50639403-50639422 | None:intergenic | 55.0% | |
| CCAGCTGAGACATGCACTGT+GGG | + | chr1_1:50640196-50640215 | None:intergenic | 55.0% | |
| CCACAGTGCATGTCTCAGCT+GGG | - | chr1_1:50640194-50640213 | Msa0026690:intron | 55.0% | |
| ! | GGAGTCGGCTTTGTAGGAAC+AGG | + | chr1_1:50640235-50640254 | None:intergenic | 55.0% |
| ! | TCCTACAAAGCCGACTCCTG+AGG | - | chr1_1:50640237-50640256 | Msa0026690:intron | 55.0% |
| ! | TCCTCAGGAGTCGGCTTTGT+AGG | + | chr1_1:50640241-50640260 | None:intergenic | 55.0% |
| GAACGAGAGAAGGGAGGGAG+AGG | - | chr1_1:50633877-50633896 | Msa0026690:CDS | 60.0% | |
| GAGTGCTAGAGCAGTGGTGC+TGG | - | chr1_1:50636163-50636182 | Msa0026690:intron | 60.0% | |
| ! | AGTGGTGCTGGGAATTGGGG+AGG | - | chr1_1:50636175-50636194 | Msa0026690:intron | 60.0% |
| GAGACATGCACTGTGGGAGC+AGG | + | chr1_1:50640190-50640209 | None:intergenic | 60.0% | |
| CCCACAGTGCATGTCTCAGC+TGG | - | chr1_1:50640193-50640212 | Msa0026690:intron | 60.0% | |
| CCCAGCTGAGACATGCACTG+TGG | + | chr1_1:50640197-50640216 | None:intergenic | 60.0% | |
| CAGTGCATGTCTCAGCTGGG+AGG | - | chr1_1:50640197-50640216 | Msa0026690:intron | 60.0% | |
| CGCAGCTCCTGCCAATGGTC+AGG | - | chr1_1:50636894-50636913 | Msa0026690:intron | 65.0% | |
| GGCAGCTCTGCAGGCTGTGA+TGG | - | chr1_1:50640270-50640289 | Msa0026690:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50633871 | 50640300 | 50633871 | ID=Msa0026690;Name=Msa0026690 |
| chr1_1 | mRNA | 50633871 | 50640300 | 50633871 | ID=Msa0026690-mRNA-1;Parent=Msa0026690;Name=Msa0026690-mRNA-1;_AED=0.21;_eAED=0.21;_QI=1930|0.77|0.9|1|0.44|0.5|10|0|145 |
| chr1_1 | exon | 50633871 | 50633999 | 50633871 | ID=Msa0026690-mRNA-1:exon:14730;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50634488 | 50634602 | 50634488 | ID=Msa0026690-mRNA-1:exon:14729;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50634705 | 50634796 | 50634705 | ID=Msa0026690-mRNA-1:exon:14728;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50637644 | 50637712 | 50637644 | ID=Msa0026690-mRNA-1:exon:14727;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50637889 | 50638070 | 50637889 | ID=Msa0026690-mRNA-1:exon:14726;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50638160 | 50638247 | 50638160 | ID=Msa0026690-mRNA-1:exon:14725;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50638391 | 50638418 | 50638391 | ID=Msa0026690-mRNA-1:exon:14724;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50638521 | 50639607 | 50638521 | ID=Msa0026690-mRNA-1:exon:14723;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50639628 | 50640152 | 50639628 | ID=Msa0026690-mRNA-1:exon:14722;Parent=Msa0026690-mRNA-1 |
| chr1_1 | exon | 50640248 | 50640300 | 50640248 | ID=Msa0026690-mRNA-1:exon:14721;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50640248 | 50640300 | 50640248 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50639628 | 50640152 | 50639628 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50638521 | 50639607 | 50638521 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50638391 | 50638418 | 50638391 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50638160 | 50638247 | 50638160 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | five_prime_UTR | 50637922 | 50638070 | 50637922 | ID=Msa0026690-mRNA-1:five_prime_utr;Parent=Msa0026690-mRNA-1 |
| chr1_1 | CDS | 50637889 | 50637921 | 50637889 | ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1 |
| chr1_1 | CDS | 50637644 | 50637712 | 50637644 | ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1 |
| chr1_1 | CDS | 50634705 | 50634796 | 50634705 | ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1 |
| chr1_1 | CDS | 50634488 | 50634602 | 50634488 | ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1 |
| chr1_1 | CDS | 50633871 | 50633999 | 50633871 | ID=Msa0026690-mRNA-1:cds;Parent=Msa0026690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
