AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778490 MtrunA17_Chr7g0255781 91.892 37 3 0 37 73 169 205 3.36e-15 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778490 AT3G56480.1 78.378 37 8 0 37 73 168 204 7.59e-13 62.0
Msa0778490 AT2G40820.4 78.378 37 8 0 37 73 196 232 2.02e-12 60.8
Msa0778490 AT2G40820.2 78.378 37 8 0 37 73 171 207 2.07e-12 60.5
Msa0778490 AT2G40820.1 78.378 37 8 0 37 73 171 207 2.07e-12 60.5
Msa0778490 AT2G40820.3 78.378 37 8 0 37 73 183 219 2.14e-12 60.5
Msa0778490 AT2G40820.5 78.378 37 8 0 37 73 61 97 2.21e-12 60.5

Find 156 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGCAATTGGTTAAATTTC+TGG 0.078085 5_2:-58986859 None:intergenic
TTGGGGTTTATTTCAGAAAT+TGG 0.169000 5_2:+58985527 Msa0778490:five_prime_UTR
GGTACCAGTTTCATTGATTT+TGG 0.172670 5_2:+58986113 Msa0778490:five_prime_UTR
ATTTGGTGGATTTCATTTCT+TGG 0.177050 5_2:+58986991 Msa0778490:five_prime_UTR
CATTTCTTGGTTTGTGACTA+TGG 0.179582 5_2:+58987004 Msa0778490:five_prime_UTR
ATCTCATGCATGTTGGTTTC+TGG 0.193122 5_2:+58985557 Msa0778490:five_prime_UTR
ATGCAAGTAGCAAAATTTAT+AGG 0.229132 5_2:+58986625 Msa0778490:five_prime_UTR
ACACCATTGCATCCTCTATC+TGG 0.232305 5_2:+58989029 Msa0778490:three_prime_UTR
ATTGGTGCAGCTGCTTATTT+TGG 0.238579 5_2:+58991133 Msa0778490:three_prime_UTR
TGTTCATCACAACAAATATT+AGG 0.242080 5_2:+58985762 Msa0778490:five_prime_UTR
AGAAATCTGCTTCTTCCTTC+TGG 0.259872 5_2:+58992059 Msa0778490:three_prime_UTR
TAACAAAACCAGCGAAATTC+TGG 0.276169 5_2:-58991977 None:intergenic
TTCTTCTAGGACAATGAAAT+TGG 0.299980 5_2:+58989067 Msa0778490:three_prime_UTR
TTGGTTTCTGGTGTTGATTT+TGG 0.301252 5_2:+58985569 Msa0778490:five_prime_UTR
AGAGCAGTGGTGCTGGGAAT+TGG 0.301411 5_2:+58987650 Msa0778490:CDS
TTCAATTATGTCCTTTCATT+TGG 0.301840 5_2:+58986974 Msa0778490:five_prime_UTR
TGCAAGTAGCAAAATTTATA+GGG 0.306920 5_2:+58986626 Msa0778490:five_prime_UTR
TAGAGGATGCAATGGTGTTT+TGG 0.313250 5_2:-58989024 None:intergenic
CTTGCATGTGATTTATGTTT+GGG 0.314771 5_2:+58985713 Msa0778490:five_prime_UTR
TCATGTGTTGGAGATAATAT+TGG 0.315523 5_2:-58986897 None:intergenic
CCCACAGTGCATGTCTCAGC+TGG 0.318746 5_2:+58991669 Msa0778490:three_prime_UTR
GAGCAGTGGTGCTGGGAATT+GGG 0.318997 5_2:+58987651 Msa0778490:CDS
ACAACAATCTAAAATAATTC+TGG 0.328240 5_2:-58991919 None:intergenic
ATCAAAACAACTTATATTCA+TGG 0.333826 5_2:-58986198 None:intergenic
CACATCATATTCATTGCTTT+AGG 0.340171 5_2:-58986419 None:intergenic
TAACAAAATTCCGGACGTTT+TGG 0.341445 5_2:+58986092 Msa0778490:five_prime_UTR
GACATCAATGTATCATTTAA+CGG 0.342148 5_2:-58991874 None:intergenic
ACTTGCATGTGATTTATGTT+TGG 0.342392 5_2:+58985712 Msa0778490:five_prime_UTR
GGAAGCAGAACTTGAAGAAT+TGG 0.342673 5_2:+58991593 Msa0778490:three_prime_UTR
AGGCTTCTGAAGATGCTAAA+AGG 0.361461 5_2:+58987579 Msa0778490:intron
ATGGTTAGTTAACAAAATTC+CGG 0.365200 5_2:+58986083 Msa0778490:five_prime_UTR
TTGATTATTGTGTCTTTGTC+TGG 0.366889 5_2:+58988443 Msa0778490:three_prime_UTR
TGCTCTAGCACTCTCGATTT+CGG 0.373790 5_2:-58987633 None:intergenic
ATTTCTCCACATCAGTCATT+AGG 0.377424 5_2:-58992042 None:intergenic
AAATAAGCAGCTGCACCAAT+TGG 0.381256 5_2:-58991130 None:intergenic
TCCTCAGGAGTCGGCTTTGT+AGG 0.381433 5_2:-58991714 None:intergenic
GTTCATGCTCTACATCAAAT+AGG 0.383482 5_2:+58986579 Msa0778490:five_prime_UTR
GTTTGGTATCACTTAACAAT+AGG 0.386577 5_2:+58986229 Msa0778490:five_prime_UTR
TTTCAACTTAATGAATTTAG+TGG 0.390978 5_2:-58986444 None:intergenic
AGATGAATTGGCAGCTCTGC+AGG 0.394946 5_2:+58991737 Msa0778490:three_prime_UTR
AATTATGTCCTTTCATTTGG+TGG 0.399033 5_2:+58986977 Msa0778490:five_prime_UTR
TTTATGCAGTTATCTATTCA+AGG 0.401802 5_2:+58988979 Msa0778490:three_prime_UTR
ATTAAGCAATGTACCTTACT+TGG 0.401978 5_2:-58987999 None:intergenic
TCGTCTACAGACTTCAAATC+TGG 0.404710 5_2:-58986137 None:intergenic
GTCCTAGAAGAAAATTGTAT+TGG 0.408585 5_2:-58989056 None:intergenic
TGGACCAAAATCAATGAAAC+TGG 0.410953 5_2:-58986117 None:intergenic
GACTCCTGAGGAAGATGAAT+TGG 0.412289 5_2:+58991725 Msa0778490:three_prime_UTR
CATTAGTGTAAGTGTAATCA+TGG 0.422986 5_2:+58985928 Msa0778490:five_prime_UTR
CATCATAAAAGCTAAAATAT+AGG 0.425665 5_2:-58986760 None:intergenic
ACGCAGCTCCTGCCATGGTC+AGG 0.431291 5_2:+58988373 Msa0778490:intron
ACAGTAGATGCGTTAAGAAC+AGG 0.444660 5_2:+58990887 Msa0778490:three_prime_UTR
GAACGAGAGAAGGGAGGGAG+AGG 0.446128 5_2:+58985357 Msa0778490:five_prime_UTR
GAGTGCTAGAGCAGTGGTGC+TGG 0.451158 5_2:+58987643 Msa0778490:CDS
TAATAGATGATAATGTTAGA+AGG 0.453601 5_2:+58990845 Msa0778490:intron
GAGAAAATAGCAAGTGTTGA+AGG 0.454409 5_2:-58992158 None:intergenic
AACAGAAGCCTGACCATGGC+AGG 0.456614 5_2:-58988381 None:intergenic
GGCAGCTCTGCAGGCTGTGA+TGG 0.460096 5_2:+58991746 Msa0778490:three_prime_UTR
CAGAATTTGAGGGAGGGGAG+TGG 0.461437 5_2:+58987065 Msa0778490:five_prime_UTR
AAATCTCTGGAATGTAAGAT+TGG 0.464316 5_2:+58988496 Msa0778490:three_prime_UTR
TACACAAGCTTCTAAACCAC+AGG 0.464474 5_2:+58987700 Msa0778490:three_prime_UTR
GGCAATTGATAGCAGAATTG+AGG 0.470513 5_2:+58986815 Msa0778490:five_prime_UTR
TTTCTTTATTGGTCATGTGT+TGG 0.477666 5_2:-58986909 None:intergenic
AGCTTAAGCCAGAATTTCGC+TGG 0.479708 5_2:+58991969 Msa0778490:three_prime_UTR
ACAATGAAATTGGTAGTGAA+TGG 0.480345 5_2:+58989077 Msa0778490:three_prime_UTR
AAATCTGTCGGTTGTGTCAC+GGG 0.480701 5_2:-58991794 None:intergenic
TTTGGTTCAATATGGTAATG+AGG 0.482030 5_2:+58985587 Msa0778490:five_prime_UTR
TGTGAAATTATTGAATAGAC+TGG 0.484250 5_2:+58992091 Msa0778490:three_prime_UTR
TGATGCAGATGGAAAGAAGA+AGG 0.484697 5_2:+58985974 Msa0778490:five_prime_UTR
GATGGAAAGAAGAAGGAAGA+AGG 0.490833 5_2:+58985981 Msa0778490:five_prime_UTR
CATGTGTTGGAGATAATATT+GGG 0.500890 5_2:-58986896 None:intergenic
ATGGAAAGAAGAAGGAAGAA+GGG 0.501486 5_2:+58985982 Msa0778490:five_prime_UTR
GAATGGATCGTCTATAACTC+AGG 0.502272 5_2:+58989094 Msa0778490:three_prime_UTR
AAACAGAACGAGAGAAGGGA+GGG 0.502519 5_2:+58985352 Msa0778490:five_prime_UTR
TTCTGAAGATGCTAAAAGGT+TGG 0.504212 5_2:+58987583 Msa0778490:CDS
TTAGGTGGTATAGGTACAAA+GGG 0.506162 5_2:+58987400 Msa0778490:intron
CCAGCTGAGACATGCACTGT+GGG 0.507614 5_2:-58991669 None:intergenic
CTGTCAGGATGTGGATGGAC+TGG 0.508897 5_2:+58987932 Msa0778490:intron
GGAGTCGGCTTTGTAGGAAC+AGG 0.511221 5_2:-58991708 None:intergenic
GTAATCATGGGATCTTAATA+CGG 0.512460 5_2:+58985941 Msa0778490:five_prime_UTR
GAGACATGCACTGTGGGAGC+AGG 0.513136 5_2:-58991663 None:intergenic
GAAGCATTGTCAGCTCCAAT+TGG 0.513583 5_2:+58991115 Msa0778490:three_prime_UTR
TAGGATATGAAACTTTGAAC+GGG 0.513709 5_2:+58986533 Msa0778490:five_prime_UTR
ATGTAAGATTGGAGGTGAGT+GGG 0.516033 5_2:+58988507 Msa0778490:three_prime_UTR
AGAATTGGAGAATGCTGAGT+TGG 0.518601 5_2:+58991608 Msa0778490:three_prime_UTR
TGTGCAAGTAGACAAATCTC+TGG 0.519810 5_2:+58988483 Msa0778490:three_prime_UTR
TGTATTGGCTACCCAGATAG+AGG 0.520594 5_2:-58989041 None:intergenic
GGGAATGCATTGTTCAAAGC+TGG 0.521453 5_2:+58986002 Msa0778490:five_prime_UTR
AGCAGTGGTGCTGGGAATTG+GGG 0.521566 5_2:+58987652 Msa0778490:CDS
TGATGATGTCGACAAGATCA+TGG 0.522293 5_2:+58991051 Msa0778490:three_prime_UTR
ATTGCTGCATCAGCCAAGTA+AGG 0.523393 5_2:+58987986 Msa0778490:three_prime_UTR
GAAACTGGTACCAAAACGTC+CGG 0.523416 5_2:-58986102 None:intergenic
TTTGTAGGAACAGGACGTGC+AGG 0.524922 5_2:-58991699 None:intergenic
TCTTACTGTCAGGATGTGGA+TGG 0.524962 5_2:+58987927 Msa0778490:intron
AGAAAATAGCAAGTGTTGAA+GGG 0.525281 5_2:-58992157 None:intergenic
CCACAGTGCATGTCTCAGCT+GGG 0.525773 5_2:+58991670 Msa0778490:three_prime_UTR
GCTGCCAATTCATCTTCCTC+AGG 0.526016 5_2:-58991729 None:intergenic
CGCATCTACTGTTTCCGTGG+TGG 0.528888 5_2:-58990876 None:intergenic
TTTAGGTGGTATAGGTACAA+AGG 0.530695 5_2:+58987399 Msa0778490:intron
ATGTGATTTATGTTTGGGGT+TGG 0.530927 5_2:+58985718 Msa0778490:five_prime_UTR
AACAGGAGCAACTACTATGA+AGG 0.534991 5_2:+58990904 Msa0778490:three_prime_UTR
CACCATTGCATCCTCTATCT+GGG 0.536277 5_2:+58989030 Msa0778490:three_prime_UTR
TGATTGTGTAGGTATGAAGA+GGG 0.537685 5_2:+58985891 Msa0778490:five_prime_UTR
GGCTGTGATGGCACTTTGAG+CGG 0.540484 5_2:+58991758 Msa0778490:three_prime_UTR
ACTTTGAACGGGAACTCCTC+AGG 0.540622 5_2:+58986544 Msa0778490:five_prime_UTR
AGAAGAAGAAAAGAAGTCGA+TGG 0.542743 5_2:+58985380 Msa0778490:five_prime_UTR
TGTGGATGGACTGGTGGAAG+AGG 0.543368 5_2:+58987941 Msa0778490:three_prime_UTR
CAAATCTGTCGGTTGTGTCA+CGG 0.546560 5_2:-58991795 None:intergenic
TCTCTGGAATGTAAGATTGG+AGG 0.547219 5_2:+58988499 Msa0778490:three_prime_UTR
TGTAAGATTGGAGGTGAGTG+GGG 0.547949 5_2:+58988508 Msa0778490:three_prime_UTR
AATTCATCTTCCTCAGGAGT+CGG 0.548839 5_2:-58991723 None:intergenic
AATGAAATCCACCAAATGAA+AGG 0.549272 5_2:-58986985 None:intergenic
CACACAAGGGAGACATAGAA+AGG 0.553462 5_2:-58986949 None:intergenic
CAATATGGTAATGAGGAACA+AGG 0.557967 5_2:+58985594 Msa0778490:five_prime_UTR
TAACGCATCTACTGTTTCCG+TGG 0.562190 5_2:-58990879 None:intergenic
GTGCTCTCAGTTAGCTGATG+AGG 0.564203 5_2:-58988415 None:intergenic
TTGATTGTGTAGGTATGAAG+AGG 0.565183 5_2:+58985890 Msa0778490:five_prime_UTR
AGAAGAAAAGAAGTCGATGG+AGG 0.566301 5_2:+58985383 Msa0778490:five_prime_UTR
GATAAATAACACAAATCTGT+CGG 0.566709 5_2:-58991806 None:intergenic
ATCTAGAATCTCATGCATGT+TGG 0.566933 5_2:+58985550 Msa0778490:five_prime_UTR
TTTCAACGCAGCTCCTGCCA+TGG 0.567402 5_2:+58988368 Msa0778490:intron
GTCTAAACAATCTGAACCAA+AGG 0.568231 5_2:+58987470 Msa0778490:CDS
GCTGTGATGGCACTTTGAGC+GGG 0.572065 5_2:+58991759 Msa0778490:three_prime_UTR
AGTGCTAGAGCAGTGGTGCT+GGG 0.572493 5_2:+58987644 Msa0778490:CDS
GTACAAATTACAATATGTCA+TGG 0.575197 5_2:-58992020 None:intergenic
AAAACAGAACGAGAGAAGGG+AGG 0.577096 5_2:+58985351 Msa0778490:five_prime_UTR
AGGTACAAAGGGAATGATGA+TGG 0.582511 5_2:+58987411 Msa0778490:intron
GAAGAGAAGATTGATGCAGA+TGG 0.586097 5_2:+58985963 Msa0778490:five_prime_UTR
ATCTTAATATACATCATGCT+AGG 0.590673 5_2:-58986365 None:intergenic
TGAGAAGGAGAAATTTGAAG+AGG 0.591853 5_2:+58987109 Msa0778490:CDS
GATGGTACTGATCAAGTTAG+TGG 0.592941 5_2:+58987429 Msa0778490:CDS
TTGCATGTGATTTATGTTTG+GGG 0.594581 5_2:+58985714 Msa0778490:five_prime_UTR
AAATCATGTGCAAAATGAGA+AGG 0.599565 5_2:+58987094 Msa0778490:exon
GAAAATAGCAAGTGTTGAAG+GGG 0.600369 5_2:-58992156 None:intergenic
ATTAGTGTAAGTGTAATCAT+GGG 0.602992 5_2:+58985929 Msa0778490:five_prime_UTR
TACCCAGATAGAGGATGCAA+TGG 0.605941 5_2:-58989032 None:intergenic
AATTGTGCAATCAAAGAGCA+TGG 0.610105 5_2:-58987728 None:intergenic
TCCTACAAAGCCGACTCCTG+AGG 0.617868 5_2:+58991713 Msa0778490:three_prime_UTR
TTGATGTAGAGCATGAACTT+CGG 0.620484 5_2:-58986574 None:intergenic
AATGTAAGATTGGAGGTGAG+TGG 0.623493 5_2:+58988506 Msa0778490:three_prime_UTR
TCAGGATGTGGATGGACTGG+TGG 0.623988 5_2:+58987935 Msa0778490:intron
AAAGAGCATGGTAAAACCTG+TGG 0.629556 5_2:-58987716 None:intergenic
AGTGGTGCTGGGAATTGGGG+AGG 0.632259 5_2:+58987655 Msa0778490:CDS
GTAGGATATGAAACTTTGAA+CGG 0.633860 5_2:+58986532 Msa0778490:five_prime_UTR
CCCAGCTGAGACATGCACTG+TGG 0.640471 5_2:-58991670 None:intergenic
TTCACACATACAAAGCCAGA+AGG 0.641929 5_2:-58992074 None:intergenic
GACATAATTGAATTCACACA+AGG 0.645918 5_2:-58986963 None:intergenic
ATGGAAGACACTTATCGTCA+CGG 0.650185 5_2:-58992001 None:intergenic
ACTGGTGGAAGAGGTTCAAG+AGG 0.653599 5_2:+58987950 Msa0778490:three_prime_UTR
GAACTTCGGCAACGTACCTG+AGG 0.654438 5_2:-58986560 None:intergenic
AATCGAGAGTGCTAGAGCAG+TGG 0.666858 5_2:+58987637 Msa0778490:CDS
GGAGCAGGAGCTGTAAATGT+TGG 0.671498 5_2:-58991648 None:intergenic
AATATGGTAATGAGGAACAA+GGG 0.673181 5_2:+58985595 Msa0778490:five_prime_UTR
CAGTGCATGTCTCAGCTGGG+AGG 0.674111 5_2:+58991673 Msa0778490:three_prime_UTR
TTTGTACCTAATGACTGATG+TGG 0.682819 5_2:+58992036 Msa0778490:three_prime_UTR
AGAAGGTGCTAAAGCCACCA+CGG 0.700426 5_2:+58990862 Msa0778490:three_prime_UTR
ACATAATTGAATTCACACAA+GGG 0.726850 5_2:-58986962 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATAAAAACTTG+AGG + chr5_2:58986509-58986528 Msa0778490:five_prime_UTR 10.0%
!! AATAAAAAATAAAAACTTGA+GGG + chr5_2:58986510-58986529 Msa0778490:five_prime_UTR 10.0%
!!! AAATTATTTTTTGAACAAAA+TGG - chr5_2:58990449-58990468 None:intergenic 10.0%
!!! GATGTATCATTTTTTTAAAA+TGG + chr5_2:58986779-58986798 Msa0778490:five_prime_UTR 15.0%
!!! AATATTGGGAATTTATTTTA+AGG - chr5_2:58986885-58986904 None:intergenic 15.0%
!!! TTATTTTCTGTTACTTTAAA+AGG + chr5_2:58987159-58987178 Msa0778490:intron 15.0%
!! TATAAACTTAAAAATCATGA+GGG - chr5_2:58987296-58987315 None:intergenic 15.0%
!! TTTCATTTATATATTCACAT+TGG + chr5_2:58988068-58988087 Msa0778490:intron 15.0%
!!! ATTTTTTTACTTGATGATTT+TGG + chr5_2:58990073-58990092 Msa0778490:intron 15.0%
!!! CTTTTCATTAAATTTTGTTT+TGG + chr5_2:58991357-58991376 Msa0778490:intron 15.0%
!! TTGAAATAATAACATTAAAC+AGG + chr5_2:58991403-58991422 Msa0778490:intron 15.0%
!! TGAAATAATAACATTAAACA+GGG + chr5_2:58991404-58991423 Msa0778490:intron 15.0%
!!! TTGATGTTGAATTATTTTCT+GGG + chr5_2:58985672-58985691 Msa0778490:five_prime_UTR 20.0%
!!! AATGATTTTATTTGATGCTA+TGG + chr5_2:58986064-58986083 Msa0778490:five_prime_UTR 20.0%
!! ATCAAAACAACTTATATTCA+TGG - chr5_2:58986201-58986220 None:intergenic 20.0%
!!! ATATAAGTTGTTTTGAAGTT+TGG + chr5_2:58986282-58986301 Msa0778490:five_prime_UTR 20.0%
!! TTTCAACTTAATGAATTTAG+TGG - chr5_2:58986447-58986466 None:intergenic 20.0%
!!! CAAATAGGTATTTTCTATAA+AGG + chr5_2:58986594-58986613 Msa0778490:five_prime_UTR 20.0%
!! CATCATAAAAGCTAAAATAT+AGG - chr5_2:58986763-58986782 None:intergenic 20.0%
!!! TAAAATGGTTTTTGAAGAAT+TGG + chr5_2:58986794-58986813 Msa0778490:five_prime_UTR 20.0%
!!! CATAGAAAGATTTTCTTTAT+TGG - chr5_2:58986923-58986942 None:intergenic 20.0%
!!! GTTTCTATAGTTATCTTTTT+TGG + chr5_2:58987026-58987045 Msa0778490:five_prime_UTR 20.0%
!!! ATTTCTTTTTTCAGAATTTG+AGG + chr5_2:58987054-58987073 Msa0778490:five_prime_UTR 20.0%
!!! TTTCTTTTTTCAGAATTTGA+GGG + chr5_2:58987055-58987074 Msa0778490:five_prime_UTR 20.0%
!! CTATAAACTTAAAAATCATG+AGG - chr5_2:58987297-58987316 None:intergenic 20.0%
!!! TTAATTTTTGCAACTTGATA+TGG + chr5_2:58987337-58987356 Msa0778490:intron 20.0%
!! TGAATATATAAATGAAAGAG+AGG - chr5_2:58988065-58988084 None:intergenic 20.0%
!!! TCTTTTATATCTTCATTACT+TGG + chr5_2:58988171-58988190 Msa0778490:intron 20.0%
!! GAACAAAAATATAGATCATA+TGG - chr5_2:58988676-58988695 None:intergenic 20.0%
!! ATATATGTTGAACTTTATGT+GGG + chr5_2:58988834-58988853 Msa0778490:intron 20.0%
!!! ATTTGTCTTATTTTTGTGTT+TGG + chr5_2:58989213-58989232 Msa0778490:intron 20.0%
!! AAAATAACCAACGATATTAT+TGG - chr5_2:58989383-58989402 None:intergenic 20.0%
!!! GTTATGGTAATTTGATTTTA+GGG + chr5_2:58989424-58989443 Msa0778490:intron 20.0%
!! TAAAATTGATACAATGTTGT+TGG + chr5_2:58989630-58989649 Msa0778490:intron 20.0%
!! TTGTTTCACAAATTAAAAAC+AGG - chr5_2:58989769-58989788 None:intergenic 20.0%
!! AATTTAAATCACCTGTTATT+GGG - chr5_2:58990236-58990255 None:intergenic 20.0%
!! TAATTTAAATCACCTGTTAT+TGG - chr5_2:58990237-58990256 None:intergenic 20.0%
!!! TAATAGATGATAATGTTAGA+AGG + chr5_2:58990845-58990864 Msa0778490:intron 20.0%
!! GTGATATATTTAATTGAGTT+TGG + chr5_2:58991004-58991023 Msa0778490:intron 20.0%
!!! TTTTTGCTTATAATTAAGTC+TGG - chr5_2:58991242-58991261 None:intergenic 20.0%
!!! ACAACAATCTAAAATAATTC+TGG - chr5_2:58991922-58991941 None:intergenic 20.0%
!!! TTTTAGATTGTTGTTCTATT+TGG + chr5_2:58991928-58991947 Msa0778490:three_prime_UTR 20.0%
!! CTTGATGTTGAATTATTTTC+TGG + chr5_2:58985671-58985690 Msa0778490:five_prime_UTR 25.0%
! TGTTCATCACAACAAATATT+AGG + chr5_2:58985762-58985781 Msa0778490:five_prime_UTR 25.0%
!!! TTTTGTGATTTTGATTGTGT+AGG + chr5_2:58985880-58985899 Msa0778490:five_prime_UTR 25.0%
! ATTAGTGTAAGTGTAATCAT+GGG + chr5_2:58985929-58985948 Msa0778490:five_prime_UTR 25.0%
!! ATGGTTAGTTAACAAAATTC+CGG + chr5_2:58986083-58986102 Msa0778490:five_prime_UTR 25.0%
!!! TAGGTATTTTTAAGTTGCTA+AGG + chr5_2:58986248-58986267 Msa0778490:five_prime_UTR 25.0%
! ATCTTAATATACATCATGCT+AGG - chr5_2:58986368-58986387 None:intergenic 25.0%
! AAAAATAAAAACTTGAGGGT+AGG + chr5_2:58986514-58986533 Msa0778490:five_prime_UTR 25.0%
! ATGCAAGTAGCAAAATTTAT+AGG + chr5_2:58986625-58986644 Msa0778490:five_prime_UTR 25.0%
! TGCAAGTAGCAAAATTTATA+GGG + chr5_2:58986626-58986645 Msa0778490:five_prime_UTR 25.0%
! ACATAATTGAATTCACACAA+GGG - chr5_2:58986965-58986984 None:intergenic 25.0%
! TTCAATTATGTCCTTTCATT+TGG + chr5_2:58986974-58986993 Msa0778490:five_prime_UTR 25.0%
!!! CTATAGTTATCTTTTTTGGT+AGG + chr5_2:58987030-58987049 Msa0778490:five_prime_UTR 25.0%
! ATTTGAAGAGGTAATTCTTA+TGG + chr5_2:58987121-58987140 Msa0778490:intron 25.0%
!! CAAGCTTAAGTTGTTAATTT+GGG + chr5_2:58987360-58987379 Msa0778490:intron 25.0%
!!! GTTACTTTGTATTGTGTTTT+AGG + chr5_2:58987382-58987401 Msa0778490:intron 25.0%
!!! TGATTCCATTTTTGTTCTAT+AGG + chr5_2:58987559-58987578 Msa0778490:intron 25.0%
! TTGTAGATAACAGTAACAAA+TGG - chr5_2:58988036-58988055 None:intergenic 25.0%
! CTAGCAGTGAAAAATAAATA+TGG + chr5_2:58988242-58988261 Msa0778490:intron 25.0%
! ATCATCATCAAAACTGTTAA+TGG + chr5_2:58988333-58988352 Msa0778490:intron 25.0%
!!! GATCTATATTTTTGTTCTTC+CGG + chr5_2:58988679-58988698 Msa0778490:intron 25.0%
! CATATATGTTGAACTTTATG+TGG + chr5_2:58988833-58988852 Msa0778490:intron 25.0%
! ATGTAAATATTACTGTTTGC+AGG + chr5_2:58988935-58988954 Msa0778490:intron 25.0%
! TTTATGCAGTTATCTATTCA+AGG + chr5_2:58988979-58988998 Msa0778490:three_prime_UTR 25.0%
!!! AAATGCAAATTGTGTTGTTT+TGG + chr5_2:58989165-58989184 Msa0778490:intron 25.0%
! GTATTCACTCTTAATATCAT+TGG - chr5_2:58989327-58989346 None:intergenic 25.0%
! AAGAAAACCAATAATATCGT+TGG + chr5_2:58989373-58989392 Msa0778490:intron 25.0%
!!! ATATCGTTGGTTATTTTTTG+AGG + chr5_2:58989386-58989405 Msa0778490:intron 25.0%
!!! TATCGTTGGTTATTTTTTGA+GGG + chr5_2:58989387-58989406 Msa0778490:intron 25.0%
! TTTGAGGGAAATAATATTGT+TGG + chr5_2:58989402-58989421 Msa0778490:intron 25.0%
!! GGAAATAATATTGTTGGTTA+TGG + chr5_2:58989408-58989427 Msa0778490:intron 25.0%
!!! GGTTATGGTAATTTGATTTT+AGG + chr5_2:58989423-58989442 Msa0778490:intron 25.0%
!! TTTTACGTGTCTTCAAATTT+AGG + chr5_2:58989515-58989534 Msa0778490:intron 25.0%
! AAATCAAAACAGAAGTGATA+AGG - chr5_2:58989686-58989705 None:intergenic 25.0%
! TGTGAAACAATTCATAGATT+AGG + chr5_2:58989779-58989798 Msa0778490:intron 25.0%
! TATTCACCAGATTAATATGT+GGG + chr5_2:58989919-58989938 Msa0778490:intron 25.0%
! ATCTATTCCCTTAATTAATG+AGG + chr5_2:58989976-58989995 Msa0778490:intron 25.0%
!!! CATTTTGATTAAAAGCTGAA+AGG - chr5_2:58990194-58990213 None:intergenic 25.0%
! GTATTACTTACTTTAGACAA+TGG + chr5_2:58990777-58990796 Msa0778490:intron 25.0%
!! TACGTCAAAAAAGTATAATG+TGG - chr5_2:58991300-58991319 None:intergenic 25.0%
! GATAAATAACACAAATCTGT+CGG - chr5_2:58991809-58991828 None:intergenic 25.0%
! GACATCAATGTATCATTTAA+CGG - chr5_2:58991877-58991896 None:intergenic 25.0%
! GTACAAATTACAATATGTCA+TGG - chr5_2:58992023-58992042 None:intergenic 25.0%
! TGTGAAATTATTGAATAGAC+TGG + chr5_2:58992091-58992110 Msa0778490:three_prime_UTR 25.0%
TTGGGGTTTATTTCAGAAAT+TGG + chr5_2:58985527-58985546 Msa0778490:five_prime_UTR 30.0%
!!! GTGTTGATTTTGGTTCAATA+TGG + chr5_2:58985579-58985598 Msa0778490:five_prime_UTR 30.0%
! TTTGGTTCAATATGGTAATG+AGG + chr5_2:58985587-58985606 Msa0778490:five_prime_UTR 30.0%
! AATATGGTAATGAGGAACAA+GGG + chr5_2:58985595-58985614 Msa0778490:five_prime_UTR 30.0%
ACTTGCATGTGATTTATGTT+TGG + chr5_2:58985712-58985731 Msa0778490:five_prime_UTR 30.0%
CTTGCATGTGATTTATGTTT+GGG + chr5_2:58985713-58985732 Msa0778490:five_prime_UTR 30.0%
TTGCATGTGATTTATGTTTG+GGG + chr5_2:58985714-58985733 Msa0778490:five_prime_UTR 30.0%
CATTAGTGTAAGTGTAATCA+TGG + chr5_2:58985928-58985947 Msa0778490:five_prime_UTR 30.0%
GTAATCATGGGATCTTAATA+CGG + chr5_2:58985941-58985960 Msa0778490:five_prime_UTR 30.0%
!!! TGTTTTGATGTGCTAAAGTT+TGG + chr5_2:58986212-58986231 Msa0778490:five_prime_UTR 30.0%
GTTTGGTATCACTTAACAAT+AGG + chr5_2:58986229-58986248 Msa0778490:five_prime_UTR 30.0%
CACATCATATTCATTGCTTT+AGG - chr5_2:58986422-58986441 None:intergenic 30.0%
GTAGGATATGAAACTTTGAA+CGG + chr5_2:58986532-58986551 Msa0778490:five_prime_UTR 30.0%
TAGGATATGAAACTTTGAAC+GGG + chr5_2:58986533-58986552 Msa0778490:five_prime_UTR 30.0%
CATATTGCCGTAACAAAAAT+AGG + chr5_2:58986695-58986714 Msa0778490:five_prime_UTR 30.0%
!!! TGTCAAGCCTATTTTTGTTA+CGG - chr5_2:58986705-58986724 None:intergenic 30.0%
!!! TTTATTTTAAGGCGAGCAAT+TGG - chr5_2:58986874-58986893 None:intergenic 30.0%
CATGTGTTGGAGATAATATT+GGG - chr5_2:58986899-58986918 None:intergenic 30.0%
TCATGTGTTGGAGATAATAT+TGG - chr5_2:58986900-58986919 None:intergenic 30.0%
TTTCTTTATTGGTCATGTGT+TGG - chr5_2:58986912-58986931 None:intergenic 30.0%
GACATAATTGAATTCACACA+AGG - chr5_2:58986966-58986985 None:intergenic 30.0%
AATTATGTCCTTTCATTTGG+TGG + chr5_2:58986977-58986996 Msa0778490:five_prime_UTR 30.0%
AATGAAATCCACCAAATGAA+AGG - chr5_2:58986988-58987007 None:intergenic 30.0%
!! ATTTGGTGGATTTCATTTCT+TGG + chr5_2:58986991-58987010 Msa0778490:five_prime_UTR 30.0%
!!! TTTTTTCAGAATTTGAGGGA+GGG + chr5_2:58987059-58987078 Msa0778490:five_prime_UTR 30.0%
AAATCATGTGCAAAATGAGA+AGG + chr5_2:58987094-58987113 Msa0778490:exon 30.0%
TAGAGTGAATAGATCCATTA+AGG + chr5_2:58987239-58987258 Msa0778490:intron 30.0%
! GCAAGCTTAAGTTGTTAATT+TGG + chr5_2:58987359-58987378 Msa0778490:intron 30.0%
!! ACTTTGTATTGTGTTTTAGG+TGG + chr5_2:58987385-58987404 Msa0778490:intron 30.0%
!! TATTGTGTTTTAGGTGGTAT+AGG + chr5_2:58987391-58987410 Msa0778490:intron 30.0%
! TATTGTTGTAGCACTTTTGA+TGG + chr5_2:58987526-58987545 Msa0778490:intron 30.0%
AGAAGCCTATAGAACAAAAA+TGG - chr5_2:58987567-58987586 None:intergenic 30.0%
AGTTAACGTAACATAATAGC+TGG - chr5_2:58987883-58987902 None:intergenic 30.0%
! TTTTGTGTTTTCTTACTGTC+AGG + chr5_2:58987917-58987936 Msa0778490:intron 30.0%
ATTAAGCAATGTACCTTACT+TGG - chr5_2:58988002-58988021 None:intergenic 30.0%
TCATTACTTGGACTATGAAT+AGG + chr5_2:58988183-58988202 Msa0778490:intron 30.0%
CATTACTTGGACTATGAATA+GGG + chr5_2:58988184-58988203 Msa0778490:intron 30.0%
TTGATTATTGTGTCTTTGTC+TGG + chr5_2:58988443-58988462 Msa0778490:three_prime_UTR 30.0%
!! AAATCTCTGGAATGTAAGAT+TGG + chr5_2:58988496-58988515 Msa0778490:three_prime_UTR 30.0%
TAACAGCAAGAATTAGACAT+TGG - chr5_2:58988568-58988587 None:intergenic 30.0%
!! ATATTTTTGTTCTTCCGGAA+AGG + chr5_2:58988684-58988703 Msa0778490:intron 30.0%
TCTAGCATTATGCATTGTTT+GGG + chr5_2:58988720-58988739 Msa0778490:intron 30.0%
! TTTTCTTGAAGCACAAAACT+GGG - chr5_2:58988754-58988773 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG - chr5_2:58988755-58988774 None:intergenic 30.0%
CTCTATACCATCATTTAATC+AGG + chr5_2:58988888-58988907 Msa0778490:intron 30.0%
TACCATCATTTAATCAGGTT+TGG + chr5_2:58988893-58988912 Msa0778490:intron 30.0%
TTCCAAACCTGATTAAATGA+TGG - chr5_2:58988898-58988917 None:intergenic 30.0%
! AGCCAATACAATTTTCTTCT+AGG + chr5_2:58989054-58989073 Msa0778490:three_prime_UTR 30.0%
GTCCTAGAAGAAAATTGTAT+TGG - chr5_2:58989059-58989078 None:intergenic 30.0%
!! TTCTTCTAGGACAATGAAAT+TGG + chr5_2:58989067-58989086 Msa0778490:three_prime_UTR 30.0%
!! ACAATGAAATTGGTAGTGAA+TGG + chr5_2:58989077-58989096 Msa0778490:three_prime_UTR 30.0%
!!! ATTGTGTTGTTTTGGTCATT+TGG + chr5_2:58989173-58989192 Msa0778490:intron 30.0%
ACTATGTATAAACCCAAATG+TGG + chr5_2:58989737-58989756 Msa0778490:intron 30.0%
TTTGTGAAAAGAATTGTCCA+TGG + chr5_2:58989815-58989834 Msa0778490:intron 30.0%
GTATTCACCAGATTAATATG+TGG + chr5_2:58989918-58989937 Msa0778490:intron 30.0%
ATTCACCAGATTAATATGTG+GGG + chr5_2:58989920-58989939 Msa0778490:intron 30.0%
TATTCCCTTAATTAATGAGG+TGG + chr5_2:58989979-58989998 Msa0778490:intron 30.0%
AAGTCCACCTCATTAATTAA+GGG - chr5_2:58989986-58990005 None:intergenic 30.0%
TAAGTCCACCTCATTAATTA+AGG - chr5_2:58989987-58990006 None:intergenic 30.0%
! AATTAATGAGGTGGACTTAA+AGG + chr5_2:58989988-58990007 Msa0778490:intron 30.0%
!! AGTTTAAGTTGCTCTAAATG+GGG - chr5_2:58990042-58990061 None:intergenic 30.0%
!! GAGTTTAAGTTGCTCTAAAT+GGG - chr5_2:58990043-58990062 None:intergenic 30.0%
!! AGAGTTTAAGTTGCTCTAAA+TGG - chr5_2:58990044-58990063 None:intergenic 30.0%
TTTGGATGTACCAATTGATT+AGG + chr5_2:58990091-58990110 Msa0778490:intron 30.0%
ATATAGAGAGCCTAATCAAT+TGG - chr5_2:58990104-58990123 None:intergenic 30.0%
ATTAAAAGCTGAAAGGATAG+CGG - chr5_2:58990187-58990206 None:intergenic 30.0%
TTTATAACATAAGCTGCAGT+TGG + chr5_2:58990506-58990525 Msa0778490:intron 30.0%
TAGAACCACTCTGATTAATA+GGG - chr5_2:58990594-58990613 None:intergenic 30.0%
ATAGAACCACTCTGATTAAT+AGG - chr5_2:58990595-58990614 None:intergenic 30.0%
! AGTTGAGAAATGTACTCTTT+TGG + chr5_2:58990619-58990638 Msa0778490:intron 30.0%
! TTTTTCCTTAATACCCAACT+TGG - chr5_2:58990741-58990760 None:intergenic 30.0%
! TAATCTTCTTTTTCCCCTTA+TGG + chr5_2:58990810-58990829 Msa0778490:intron 30.0%
TACAAAAATCACCACCATAA+GGG - chr5_2:58990827-58990846 None:intergenic 30.0%
TTACAAAAATCACCACCATA+AGG - chr5_2:58990828-58990847 None:intergenic 30.0%
!!! TTGGTTCTGTTTCTTTTTAC+AGG + chr5_2:58991023-58991042 Msa0778490:intron 30.0%
! TTTGGAACATATTTCATCGA+AGG + chr5_2:58991375-58991394 Msa0778490:intron 30.0%
! ATTTTGTCTATATTGAGTCC+AGG + chr5_2:58991440-58991459 Msa0778490:intron 30.0%
! TTTTGTCTATATTGAGTCCA+GGG + chr5_2:58991441-58991460 Msa0778490:intron 30.0%
TTTCAGATTGAACACATGTT+TGG - chr5_2:58991501-58991520 None:intergenic 30.0%
! ATGTGTTCAATCTGAAATGT+TGG + chr5_2:58991504-58991523 Msa0778490:intron 30.0%
AATAAATTCAGAATGCCACA+TGG - chr5_2:58991554-58991573 None:intergenic 30.0%
!!! TGTTCTATTTGGTTTTGCAA+CGG + chr5_2:58991939-58991958 Msa0778490:three_prime_UTR 30.0%
AGAAGAAGAAAAGAAGTCGA+TGG + chr5_2:58985380-58985399 Msa0778490:five_prime_UTR 35.0%
AGGGAAATTACTAACATGCA+AGG + chr5_2:58985410-58985429 Msa0778490:intron 35.0%
! CTTTTCTCTATTCTGCTCTT+GGG + chr5_2:58985509-58985528 Msa0778490:five_prime_UTR 35.0%
! TTTTCTCTATTCTGCTCTTG+GGG + chr5_2:58985510-58985529 Msa0778490:five_prime_UTR 35.0%
! ATCTAGAATCTCATGCATGT+TGG + chr5_2:58985550-58985569 Msa0778490:five_prime_UTR 35.0%
!!! TTGGTTTCTGGTGTTGATTT+TGG + chr5_2:58985569-58985588 Msa0778490:five_prime_UTR 35.0%
! CAATATGGTAATGAGGAACA+AGG + chr5_2:58985594-58985613 Msa0778490:five_prime_UTR 35.0%
! ATGTGATTTATGTTTGGGGT+TGG + chr5_2:58985718-58985737 Msa0778490:five_prime_UTR 35.0%
!!! TGGGGTTGGAATTTTGATTA+TGG + chr5_2:58985732-58985751 Msa0778490:five_prime_UTR 35.0%
TTGATTGTGTAGGTATGAAG+AGG + chr5_2:58985890-58985909 Msa0778490:five_prime_UTR 35.0%
TGATTGTGTAGGTATGAAGA+GGG + chr5_2:58985891-58985910 Msa0778490:five_prime_UTR 35.0%
ATGGAAAGAAGAAGGAAGAA+GGG + chr5_2:58985982-58986001 Msa0778490:five_prime_UTR 35.0%
! TAACAAAATTCCGGACGTTT+TGG + chr5_2:58986092-58986111 Msa0778490:five_prime_UTR 35.0%
!!! GGTACCAGTTTCATTGATTT+TGG + chr5_2:58986113-58986132 Msa0778490:five_prime_UTR 35.0%
TGGACCAAAATCAATGAAAC+TGG - chr5_2:58986120-58986139 None:intergenic 35.0%
!!! TCTGTAGACGATTTTGAAGT+TGG + chr5_2:58986149-58986168 Msa0778490:five_prime_UTR 35.0%
!!! CTGTAGACGATTTTGAAGTT+GGG + chr5_2:58986150-58986169 Msa0778490:five_prime_UTR 35.0%
!!! TGTAGACGATTTTGAAGTTG+GGG + chr5_2:58986151-58986170 Msa0778490:five_prime_UTR 35.0%
TTGATGTAGAGCATGAACTT+CGG - chr5_2:58986577-58986596 None:intergenic 35.0%
GTTCATGCTCTACATCAAAT+AGG + chr5_2:58986579-58986598 Msa0778490:five_prime_UTR 35.0%
CGAGCAATTGGTTAAATTTC+TGG - chr5_2:58986862-58986881 None:intergenic 35.0%
!! CATTTCTTGGTTTGTGACTA+TGG + chr5_2:58987004-58987023 Msa0778490:five_prime_UTR 35.0%
!!! CTTTTTTCAGAATTTGAGGG+AGG + chr5_2:58987058-58987077 Msa0778490:five_prime_UTR 35.0%
!! TTTTTCAGAATTTGAGGGAG+GGG + chr5_2:58987060-58987079 Msa0778490:five_prime_UTR 35.0%
! CTCATTTTGCACATGATTTG+AGG - chr5_2:58987093-58987112 None:intergenic 35.0%
TGAGAAGGAGAAATTTGAAG+AGG + chr5_2:58987109-58987128 Msa0778490:CDS 35.0%
TTTAGGTGGTATAGGTACAA+AGG + chr5_2:58987399-58987418 Msa0778490:intron 35.0%
TTAGGTGGTATAGGTACAAA+GGG + chr5_2:58987400-58987419 Msa0778490:intron 35.0%
GTCTAAACAATCTGAACCAA+AGG + chr5_2:58987470-58987489 Msa0778490:CDS 35.0%
TTAGTGGTGTTTAGTGGTTA+AGG + chr5_2:58987493-58987512 Msa0778490:intron 35.0%
! TTCTGAAGATGCTAAAAGGT+TGG + chr5_2:58987583-58987602 Msa0778490:CDS 35.0%
AATTGTGCAATCAAAGAGCA+TGG - chr5_2:58987731-58987750 None:intergenic 35.0%
!! TCTAATTCTTGCTGTTACTG+AGG + chr5_2:58988571-58988590 Msa0778490:intron 35.0%
CTCTAGCATTATGCATTGTT+TGG + chr5_2:58988719-58988738 Msa0778490:intron 35.0%
CAAAGAGCTCTTTACTCTTT+AGG - chr5_2:58989574-58989593 None:intergenic 35.0%
GTGGACTTAAAGGAGAAATA+GGG + chr5_2:58989998-58990017 Msa0778490:intron 35.0%
TTAAAGGAGAAATAGGGCAA+TGG + chr5_2:58990004-58990023 Msa0778490:intron 35.0%
CTCAACACAATTAATCAGAG+TGG - chr5_2:58990131-58990150 None:intergenic 35.0%
GCATAAAAGTTCCCAATAAC+AGG + chr5_2:58990222-58990241 Msa0778490:intron 35.0%
TGTTCAACATCTTGATATGC+AGG - chr5_2:58990362-58990381 None:intergenic 35.0%
GTACAATTCACATTCTTCGA+AGG - chr5_2:58990395-58990414 None:intergenic 35.0%
AAGAAACTTCTGCATTGTGT+AGG - chr5_2:58990488-58990507 None:intergenic 35.0%
ACAAAAATCACCACCATAAG+GGG - chr5_2:58990826-58990845 None:intergenic 35.0%
TAAGTCTGGAGAGAATCAAA+AGG - chr5_2:58991228-58991247 None:intergenic 35.0%
AACATTAAACAGGGTGAAGT+TGG + chr5_2:58991413-58991432 Msa0778490:intron 35.0%
TAACAAAACCAGCGAAATTC+TGG - chr5_2:58991980-58991999 None:intergenic 35.0%
TTTGTACCTAATGACTGATG+TGG + chr5_2:58992036-58992055 Msa0778490:three_prime_UTR 35.0%
ATTTCTCCACATCAGTCATT+AGG - chr5_2:58992045-58992064 None:intergenic 35.0%
AGAAGAAAAGAAGTCGATGG+AGG + chr5_2:58985383-58985402 Msa0778490:five_prime_UTR 40.0%
GAGGGAAGAAATGAGGAAAA+TGG - chr5_2:58985479-58985498 None:intergenic 40.0%
TTTCCTCATTTCTTCCCTCT+AGG + chr5_2:58985480-58985499 Msa0778490:intron 40.0%
TTCCTCATTTCTTCCCTCTA+GGG + chr5_2:58985481-58985500 Msa0778490:intron 40.0%
! GCTTTTCTCTATTCTGCTCT+TGG + chr5_2:58985508-58985527 Msa0778490:five_prime_UTR 40.0%
!! ATCTCATGCATGTTGGTTTC+TGG + chr5_2:58985557-58985576 Msa0778490:five_prime_UTR 40.0%
! GAGCTAATGTCATGCTTTTC+AGG + chr5_2:58985622-58985641 Msa0778490:five_prime_UTR 40.0%
GAAGAGAAGATTGATGCAGA+TGG + chr5_2:58985963-58985982 Msa0778490:five_prime_UTR 40.0%
TGATGCAGATGGAAAGAAGA+AGG + chr5_2:58985974-58985993 Msa0778490:five_prime_UTR 40.0%
GATGGAAAGAAGAAGGAAGA+AGG + chr5_2:58985981-58986000 Msa0778490:five_prime_UTR 40.0%
TCGTCTACAGACTTCAAATC+TGG - chr5_2:58986140-58986159 None:intergenic 40.0%
!!! GTAGACGATTTTGAAGTTGG+GGG + chr5_2:58986152-58986171 Msa0778490:five_prime_UTR 40.0%
! GGCAATTGATAGCAGAATTG+AGG + chr5_2:58986815-58986834 Msa0778490:five_prime_UTR 40.0%
AAACTTGACGTGTTCTTGAC+AGG + chr5_2:58987211-58987230 Msa0778490:intron 40.0%
AGGTACAAAGGGAATGATGA+TGG + chr5_2:58987411-58987430 Msa0778490:intron 40.0%
!! GATGGTACTGATCAAGTTAG+TGG + chr5_2:58987429-58987448 Msa0778490:CDS 40.0%
CAATCTGAACCAAAGGTTAG+TGG + chr5_2:58987477-58987496 Msa0778490:intron 40.0%
CACTAAACACCACTAACCTT+TGG - chr5_2:58987489-58987508 None:intergenic 40.0%
CAAAGGTTAGTGGTGTTTAG+TGG + chr5_2:58987487-58987506 Msa0778490:intron 40.0%
! AGGCTTCTGAAGATGCTAAA+AGG + chr5_2:58987579-58987598 Msa0778490:intron 40.0%
TACACAAGCTTCTAAACCAC+AGG + chr5_2:58987700-58987719 Msa0778490:three_prime_UTR 40.0%
! AAAGAGCATGGTAAAACCTG+TGG - chr5_2:58987719-58987738 None:intergenic 40.0%
! GTTTTCTTACTGTCAGGATG+TGG + chr5_2:58987923-58987942 Msa0778490:intron 40.0%
! TTTTAACAGAAGCCTGACCA+TGG - chr5_2:58988388-58988407 None:intergenic 40.0%
TGTGCAAGTAGACAAATCTC+TGG + chr5_2:58988483-58988502 Msa0778490:three_prime_UTR 40.0%
!! TCTCTGGAATGTAAGATTGG+AGG + chr5_2:58988499-58988518 Msa0778490:three_prime_UTR 40.0%
AATGTAAGATTGGAGGTGAG+TGG + chr5_2:58988506-58988525 Msa0778490:three_prime_UTR 40.0%
ATGTAAGATTGGAGGTGAGT+GGG + chr5_2:58988507-58988526 Msa0778490:three_prime_UTR 40.0%
AGATACTATCCATCATCGCA+TGG - chr5_2:58988638-58988657 None:intergenic 40.0%
AGAGCAAGACAAAACCTTTC+CGG - chr5_2:58988701-58988720 None:intergenic 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG + chr5_2:58988775-58988794 Msa0778490:intron 40.0%
! TAGAGGATGCAATGGTGTTT+TGG - chr5_2:58989027-58989046 None:intergenic 40.0%
GAATGGATCGTCTATAACTC+AGG + chr5_2:58989094-58989113 Msa0778490:three_prime_UTR 40.0%
! GTCCATGGCTGATTTAATTG+AGG + chr5_2:58989830-58989849 Msa0778490:intron 40.0%
GAATACACTCATCCTTCTTG+AGG - chr5_2:58989904-58989923 None:intergenic 40.0%
CTTCTCCCCACATATTAATC+TGG - chr5_2:58989928-58989947 None:intergenic 40.0%
CAGATTAATATGTGGGGAGA+AGG + chr5_2:58989926-58989945 Msa0778490:intron 40.0%
GGAGAAGGCTTCAAAAGTAA+CGG + chr5_2:58989941-58989960 Msa0778490:intron 40.0%
! GGTGGACTTAAAGGAGAAAT+AGG + chr5_2:58989997-58990016 Msa0778490:intron 40.0%
ATAGGGCAATGGAACAAAAC+AGG + chr5_2:58990015-58990034 Msa0778490:intron 40.0%
CGGCAAAATGAATGGTTGAT+TGG - chr5_2:58990167-58990186 None:intergenic 40.0%
! AAGGATAGCGGCAAAATGAA+TGG - chr5_2:58990175-58990194 None:intergenic 40.0%
CTGCATTGTGTAGGAGAATT+TGG - chr5_2:58990479-58990498 None:intergenic 40.0%
ATTAATAGGGCAGTCTCACA+TGG - chr5_2:58990581-58990600 None:intergenic 40.0%
! TTGGCAGCAGAAAGTACATA+AGG - chr5_2:58990722-58990741 None:intergenic 40.0%
! TCTTCTTTTTCCCCTTATGG+TGG + chr5_2:58990813-58990832 Msa0778490:intron 40.0%
ACAGTAGATGCGTTAAGAAC+AGG + chr5_2:58990887-58990906 Msa0778490:three_prime_UTR 40.0%
AACAGGAGCAACTACTATGA+AGG + chr5_2:58990904-58990923 Msa0778490:three_prime_UTR 40.0%
CAACTCGATCGTTAAAGACT+TGG - chr5_2:58990971-58990990 None:intergenic 40.0%
! TGATGATGTCGACAAGATCA+TGG + chr5_2:58991051-58991070 Msa0778490:three_prime_UTR 40.0%
AAATAAGCAGCTGCACCAAT+TGG - chr5_2:58991133-58991152 None:intergenic 40.0%
! ATTGGTGCAGCTGCTTATTT+TGG + chr5_2:58991133-58991152 Msa0778490:three_prime_UTR 40.0%
TTCGTATATTAGCACTACCC+TGG - chr5_2:58991461-58991480 None:intergenic 40.0%
!! CTGAAATGTTGGTGCTACAT+TGG + chr5_2:58991515-58991534 Msa0778490:intron 40.0%
!! GGTTTTAATGCATGTCCATG+TGG + chr5_2:58991536-58991555 Msa0778490:intron 40.0%
!!! TTGTTGTTTTCAGCACGAAC+TGG + chr5_2:58991572-58991591 Msa0778490:intron 40.0%
GGAAGCAGAACTTGAAGAAT+TGG + chr5_2:58991593-58991612 Msa0778490:three_prime_UTR 40.0%
AGAATTGGAGAATGCTGAGT+TGG + chr5_2:58991608-58991627 Msa0778490:three_prime_UTR 40.0%
AATTCATCTTCCTCAGGAGT+CGG - chr5_2:58991726-58991745 None:intergenic 40.0%
ATGGAAGACACTTATCGTCA+CGG - chr5_2:58992004-58992023 None:intergenic 40.0%
AGAAATCTGCTTCTTCCTTC+TGG + chr5_2:58992059-58992078 Msa0778490:three_prime_UTR 40.0%
TTCACACATACAAAGCCAGA+AGG - chr5_2:58992077-58992096 None:intergenic 40.0%
AAAACAGAACGAGAGAAGGG+AGG + chr5_2:58985351-58985370 Msa0778490:five_prime_UTR 45.0%
AAACAGAACGAGAGAAGGGA+GGG + chr5_2:58985352-58985371 Msa0778490:five_prime_UTR 45.0%
AAGAAGTCGATGGAGGAAGA+AGG + chr5_2:58985390-58985409 Msa0778490:intron 45.0%
AGAAGTCGATGGAGGAAGAA+GGG + chr5_2:58985391-58985410 Msa0778490:intron 45.0%
ATGAGGAAAATGGAGCTTGC+TGG - chr5_2:58985469-58985488 None:intergenic 45.0%
GGGAATGCATTGTTCAAAGC+TGG + chr5_2:58986002-58986021 Msa0778490:five_prime_UTR 45.0%
GAAACTGGTACCAAAACGTC+CGG - chr5_2:58986105-58986124 None:intergenic 45.0%
CACACAAGGGAGACATAGAA+AGG - chr5_2:58986952-58986971 None:intergenic 45.0%
TGCTATCAGCAACAAGCTTG+CGG + chr5_2:58987266-58987285 Msa0778490:intron 45.0%
TGCTCTAGCACTCTCGATTT+CGG - chr5_2:58987636-58987655 None:intergenic 45.0%
TCTTACTGTCAGGATGTGGA+TGG + chr5_2:58987927-58987946 Msa0778490:intron 45.0%
ATTGCTGCATCAGCCAAGTA+AGG + chr5_2:58987986-58988005 Msa0778490:three_prime_UTR 45.0%
TGTAAGATTGGAGGTGAGTG+GGG + chr5_2:58988508-58988527 Msa0778490:three_prime_UTR 45.0%
! AATGCTTTTGCAAAGCACGC+AGG + chr5_2:58988531-58988550 Msa0778490:three_prime_UTR 45.0%
!! TTCTTGCTGTTACTGAGGAG+AGG + chr5_2:58988576-58988595 Msa0778490:intron 45.0%
!! TCTTGCTGTTACTGAGGAGA+GGG + chr5_2:58988577-58988596 Msa0778490:intron 45.0%
!! GGATGCAATGGTGTTTTGGA+AGG - chr5_2:58989023-58989042 None:intergenic 45.0%
ACACCATTGCATCCTCTATC+TGG + chr5_2:58989029-58989048 Msa0778490:three_prime_UTR 45.0%
CACCATTGCATCCTCTATCT+GGG + chr5_2:58989030-58989049 Msa0778490:three_prime_UTR 45.0%
TACCCAGATAGAGGATGCAA+TGG - chr5_2:58989035-58989054 None:intergenic 45.0%
!! TGTATTGGCTACCCAGATAG+AGG - chr5_2:58989044-58989063 None:intergenic 45.0%
AACAGGCAGCTTCCACATTT+GGG - chr5_2:58989752-58989771 None:intergenic 45.0%
AAACAGGCAGCTTCCACATT+TGG - chr5_2:58989753-58989772 None:intergenic 45.0%
CGCCTCAATTAAATCAGCCA+TGG - chr5_2:58989835-58989854 None:intergenic 45.0%
! TGGCTGATTTAATTGAGGCG+TGG + chr5_2:58989835-58989854 Msa0778490:intron 45.0%
! CGCAGTTTGTTTCCTCAAGA+AGG + chr5_2:58989889-58989908 Msa0778490:intron 45.0%
GACTGCCCTATTAATCAGAG+TGG + chr5_2:58990586-58990605 Msa0778490:intron 45.0%
TGTACTTTCTGCTGCCAAGT+TGG + chr5_2:58990724-58990743 Msa0778490:intron 45.0%
GTACTTTCTGCTGCCAAGTT+GGG + chr5_2:58990725-58990744 Msa0778490:intron 45.0%
! TGCTGCCAAGTTGGGTATTA+AGG + chr5_2:58990733-58990752 Msa0778490:intron 45.0%
TAACGCATCTACTGTTTCCG+TGG - chr5_2:58990882-58990901 None:intergenic 45.0%
!! GAAGCATTGTCAGCTCCAAT+TGG + chr5_2:58991115-58991134 Msa0778490:three_prime_UTR 45.0%
GACTCCTGAGGAAGATGAAT+TGG + chr5_2:58991725-58991744 Msa0778490:three_prime_UTR 45.0%
! AAATCTGTCGGTTGTGTCAC+GGG - chr5_2:58991797-58991816 None:intergenic 45.0%
! CAAATCTGTCGGTTGTGTCA+CGG - chr5_2:58991798-58991817 None:intergenic 45.0%
!!! CTATTTGGTTTTGCAACGGC+TGG + chr5_2:58991943-58991962 Msa0778490:three_prime_UTR 45.0%
AGCTTAAGCCAGAATTTCGC+TGG + chr5_2:58991969-58991988 Msa0778490:three_prime_UTR 45.0%
!!! TTTTAAATATCATATTATAA+CGG - chr5_2:58987194-58987213 None:intergenic 5.0%
TTGAAGTTGGGGGCAGAAGT+AGG + chr5_2:58986162-58986181 Msa0778490:five_prime_UTR 50.0%
ACTTTGAACGGGAACTCCTC+AGG + chr5_2:58986544-58986563 Msa0778490:five_prime_UTR 50.0%
GCTGATAGCAGGCACCTTAA+TGG - chr5_2:58987256-58987275 None:intergenic 50.0%
!! GCAAGCTTGTTGCTGATAGC+AGG - chr5_2:58987267-58987286 None:intergenic 50.0%
!! AATCGAGAGTGCTAGAGCAG+TGG + chr5_2:58987637-58987656 Msa0778490:CDS 50.0%
ACTGGTGGAAGAGGTTCAAG+AGG + chr5_2:58987950-58987969 Msa0778490:three_prime_UTR 50.0%
GTGCTCTCAGTTAGCTGATG+AGG - chr5_2:58988418-58988437 None:intergenic 50.0%
GTTCGTTGACCATGCGATGA+TGG + chr5_2:58988626-58988645 Msa0778490:intron 50.0%
GAGGAAACAAACTGCGCGAA+CGG - chr5_2:58989885-58989904 None:intergenic 50.0%
!! AGAAGGTGCTAAAGCCACCA+CGG + chr5_2:58990862-58990881 Msa0778490:three_prime_UTR 50.0%
!!! TGCAGCTGCTTATTTTGGCG+AGG + chr5_2:58991138-58991157 Msa0778490:three_prime_UTR 50.0%
GGAGCAGGAGCTGTAAATGT+TGG - chr5_2:58991651-58991670 None:intergenic 50.0%
TTTGTAGGAACAGGACGTGC+AGG - chr5_2:58991702-58991721 None:intergenic 50.0%
GCTGCCAATTCATCTTCCTC+AGG - chr5_2:58991732-58991751 None:intergenic 50.0%
AGATGAATTGGCAGCTCTGC+AGG + chr5_2:58991737-58991756 Msa0778490:three_prime_UTR 50.0%
CGCCCTAGAGGGAAGAAATG+AGG - chr5_2:58985486-58985505 None:intergenic 55.0%
GAGAAAAGCTGCGCCCTAGA+GGG - chr5_2:58985497-58985516 None:intergenic 55.0%
AGAGAAAAGCTGCGCCCTAG+AGG - chr5_2:58985498-58985517 None:intergenic 55.0%
GAACTTCGGCAACGTACCTG+AGG - chr5_2:58986563-58986582 None:intergenic 55.0%
CAGAATTTGAGGGAGGGGAG+TGG + chr5_2:58987065-58987084 Msa0778490:five_prime_UTR 55.0%
AGTGCTAGAGCAGTGGTGCT+GGG + chr5_2:58987644-58987663 Msa0778490:CDS 55.0%
! AGAGCAGTGGTGCTGGGAAT+TGG + chr5_2:58987650-58987669 Msa0778490:CDS 55.0%
! GAGCAGTGGTGCTGGGAATT+GGG + chr5_2:58987651-58987670 Msa0778490:CDS 55.0%
! AGCAGTGGTGCTGGGAATTG+GGG + chr5_2:58987652-58987671 Msa0778490:CDS 55.0%
CTGTCAGGATGTGGATGGAC+TGG + chr5_2:58987932-58987951 Msa0778490:intron 55.0%
!! TCAGGATGTGGATGGACTGG+TGG + chr5_2:58987935-58987954 Msa0778490:intron 55.0%
!! TGTGGATGGACTGGTGGAAG+AGG + chr5_2:58987941-58987960 Msa0778490:three_prime_UTR 55.0%
TTTCAACGCAGCTCCTGCCA+TGG + chr5_2:58988368-58988387 Msa0778490:intron 55.0%
AACAGAAGCCTGACCATGGC+AGG - chr5_2:58988384-58988403 None:intergenic 55.0%
CGCATCTACTGTTTCCGTGG+TGG - chr5_2:58990879-58990898 None:intergenic 55.0%
CCAGCTGAGACATGCACTGT+GGG - chr5_2:58991672-58991691 None:intergenic 55.0%
CCACAGTGCATGTCTCAGCT+GGG + chr5_2:58991670-58991689 Msa0778490:three_prime_UTR 55.0%
! GGAGTCGGCTTTGTAGGAAC+AGG - chr5_2:58991711-58991730 None:intergenic 55.0%
! TCCTACAAAGCCGACTCCTG+AGG + chr5_2:58991713-58991732 Msa0778490:three_prime_UTR 55.0%
! TCCTCAGGAGTCGGCTTTGT+AGG - chr5_2:58991717-58991736 None:intergenic 55.0%
GGCTGTGATGGCACTTTGAG+CGG + chr5_2:58991758-58991777 Msa0778490:three_prime_UTR 55.0%
GCTGTGATGGCACTTTGAGC+GGG + chr5_2:58991759-58991778 Msa0778490:three_prime_UTR 55.0%
GAACGAGAGAAGGGAGGGAG+AGG + chr5_2:58985357-58985376 Msa0778490:five_prime_UTR 60.0%
GAGTGCTAGAGCAGTGGTGC+TGG + chr5_2:58987643-58987662 Msa0778490:CDS 60.0%
! AGTGGTGCTGGGAATTGGGG+AGG + chr5_2:58987655-58987674 Msa0778490:CDS 60.0%
GAGACATGCACTGTGGGAGC+AGG - chr5_2:58991666-58991685 None:intergenic 60.0%
CCCACAGTGCATGTCTCAGC+TGG + chr5_2:58991669-58991688 Msa0778490:three_prime_UTR 60.0%
CCCAGCTGAGACATGCACTG+TGG - chr5_2:58991673-58991692 None:intergenic 60.0%
CAGTGCATGTCTCAGCTGGG+AGG + chr5_2:58991673-58991692 Msa0778490:three_prime_UTR 60.0%
ACGCAGCTCCTGCCATGGTC+AGG + chr5_2:58988373-58988392 Msa0778490:intron 65.0%
GGCAGCTCTGCAGGCTGTGA+TGG + chr5_2:58991746-58991765 Msa0778490:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 58985351 58992165 58985351 ID=Msa0778490;Name=Msa0778490
chr5_2 mRNA 58985351 58992165 58985351 ID=Msa0778490-mRNA-1;Parent=Msa0778490;Name=Msa0778490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1633|0.9|0.90|1|0.3|0.36|11|1261|73
chr5_2 exon 58985351 58985403 58985351 ID=Msa0778490-mRNA-1:exon:17380;Parent=Msa0778490-mRNA-1
chr5_2 exon 58985499 58986023 58985499 ID=Msa0778490-mRNA-1:exon:17381;Parent=Msa0778490-mRNA-1
chr5_2 exon 58986044 58987130 58986044 ID=Msa0778490-mRNA-1:exon:17382;Parent=Msa0778490-mRNA-1
chr5_2 exon 58987413 58987491 58987413 ID=Msa0778490-mRNA-1:exon:17383;Parent=Msa0778490-mRNA-1
chr5_2 exon 58987581 58987762 58987581 ID=Msa0778490-mRNA-1:exon:17384;Parent=Msa0778490-mRNA-1
chr5_2 exon 58987939 58988007 58987939 ID=Msa0778490-mRNA-1:exon:17385;Parent=Msa0778490-mRNA-1
chr5_2 exon 58988379 58988552 58988379 ID=Msa0778490-mRNA-1:exon:17386;Parent=Msa0778490-mRNA-1
chr5_2 exon 58988957 58989115 58988957 ID=Msa0778490-mRNA-1:exon:17387;Parent=Msa0778490-mRNA-1
chr5_2 exon 58990851 58990942 58990851 ID=Msa0778490-mRNA-1:exon:17388;Parent=Msa0778490-mRNA-1
chr5_2 exon 58991045 58991159 58991045 ID=Msa0778490-mRNA-1:exon:17389;Parent=Msa0778490-mRNA-1
chr5_2 exon 58991585 58992165 58991585 ID=Msa0778490-mRNA-1:exon:17390;Parent=Msa0778490-mRNA-1
chr5_2 five_prime_UTR 58985351 58985403 58985351 ID=Msa0778490-mRNA-1:five_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 five_prime_UTR 58985499 58986023 58985499 ID=Msa0778490-mRNA-1:five_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 five_prime_UTR 58986044 58987098 58986044 ID=Msa0778490-mRNA-1:five_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 CDS 58987099 58987130 58987099 ID=Msa0778490-mRNA-1:cds;Parent=Msa0778490-mRNA-1
chr5_2 CDS 58987413 58987491 58987413 ID=Msa0778490-mRNA-1:cds;Parent=Msa0778490-mRNA-1
chr5_2 CDS 58987581 58987691 58987581 ID=Msa0778490-mRNA-1:cds;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58987692 58987762 58987692 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58987939 58988007 58987939 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58988379 58988552 58988379 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58988957 58989115 58988957 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58990851 58990942 58990851 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58991045 58991159 58991045 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
chr5_2 three_prime_UTR 58991585 58992165 58991585 ID=Msa0778490-mRNA-1:three_prime_utr;Parent=Msa0778490-mRNA-1
Gene Sequence

>Msa0778490

ATGTGCAAAATGAGAAGGAGAAATTTGAAGAGGTACAAAGGGAATGATGATGGTACTGATCAAGTTAGTGGTGTTGAACTTGATAAAGTGTCTAAACAATCTGAACCAAAGGCTTCTGAAGATGCTAAAAGGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGGGAATTGGGGAGGCACTTGAAGAATAA
Protein sequence

>Msa0778490

MCKMRRRNLKRYKGNDDGTDQVSGVELDKVSKQSEPKASEDAKRLVNQEKSFACAEIESARAVVLGIGEALEE*