AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026730 MtrunA17_Chr8g0383021 79.757 247 17 1 1 214 1 247 1.44e-142 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026730 AT2G21940.4 49.782 229 78 4 22 217 40 264 3.76e-68 212
Msa0026730 AT2G21940.2 49.782 229 77 4 22 217 40 263 2.12e-67 210
Msa0026730 AT2G21940.5 49.782 229 77 4 22 217 40 263 2.12e-67 210
Msa0026730 AT2G21940.1 49.782 229 77 4 22 217 40 263 2.12e-67 210
Msa0026730 AT2G21940.7 49.550 222 74 4 22 210 40 256 1.74e-65 204
Msa0026730 AT2G21940.3 49.550 222 74 4 22 210 40 256 1.74e-65 204
Msa0026730 AT2G21940.6 49.550 222 74 4 22 210 40 256 1.74e-65 204
Msa0026730 AT4G39540.2 41.860 258 106 4 1 214 1 258 1.47e-59 189
Msa0026730 AT4G39540.1 41.860 258 106 4 1 214 1 258 1.47e-59 189
Msa0026730 AT4G39540.3 40.226 266 107 5 1 214 1 266 5.38e-56 181

Find 101 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACACTATCTTCTTCTATTT+TGG 0.019290 1_1:-50675599 Msa0026730:three_prime_UTR
AGAAGAGGTTAAGGGTAATT+AGG 0.223386 1_1:-50682270 Msa0026730:intron
GGTCTCCCATGGATCTTAAT+TGG 0.223631 1_1:-50675577 Msa0026730:three_prime_UTR
TAGCAACAGTTTGAATTTAT+AGG 0.238678 1_1:-50675795 Msa0026730:three_prime_UTR
AACATTCGTTTCAGTGTTTA+CGG 0.270486 1_1:-50682143 Msa0026730:five_prime_UTR
CACGCACTTGTGTGGGAAAT+TGG 0.290761 1_1:-50682293 Msa0026730:five_prime_UTR
TCCAACAGCTGCAATTCTTT+TGG 0.294679 1_1:+50676749 None:intergenic
TAAATTCAAACTGTTGCTAT+TGG 0.325138 1_1:+50675799 None:intergenic
AGTACGATTTGGCGCAATTA+AGG 0.325683 1_1:-50675925 Msa0026730:three_prime_UTR
CACTCTAACCAGATGTATAA+TGG 0.326445 1_1:+50682358 None:intergenic
TCTGGTTAGAGTGTTGGATT+TGG 0.339431 1_1:-50682348 Msa0026730:five_prime_UTR
TCGGCACAAGAAGGTTTCTA+TGG 0.345778 1_1:-50681980 Msa0026730:CDS
TACAACATACAATCTCTTAG+AGG 0.353725 1_1:+50675626 None:intergenic
CTATTTATCCATTATACATC+TGG 0.354380 1_1:-50682366 Msa0026730:five_prime_UTR
GCTGATATATTCAAACTCTA+TGG 0.355113 1_1:-50678699 Msa0026730:CDS
AGAAAGAATAGTGAACGATT+TGG 0.381231 1_1:+50682437 None:intergenic
AGAATCTTTCTTTCGTGATA+AGG 0.381877 1_1:-50678676 Msa0026730:CDS
CACTAAGTGGGGTCGTCAAC+CGG 0.387217 1_1:+50675737 None:intergenic
ACTAATGTGTGTTCTGTAGA+TGG 0.389060 1_1:+50675514 None:intergenic
AAACCGTTATATTTAACTTC+AGG 0.389669 1_1:-50675446 None:intergenic
TAAACACTGAAACGAATGTT+TGG 0.390796 1_1:+50682146 None:intergenic
CTGGTTAGAGTGTTGGATTT+GGG 0.392669 1_1:-50682347 Msa0026730:five_prime_UTR
TTGATTGAGGAAAAGGTTGA+TGG 0.393326 1_1:-50678732 Msa0026730:CDS
TGTTATTATGAAAATATTAG+TGG 0.396970 1_1:+50682533 None:intergenic
TGATACATTGATTGAGGAAA+AGG 0.400790 1_1:-50678739 Msa0026730:CDS
GTAGCTTCAACATTGGAATC+TGG 0.413868 1_1:-50681100 Msa0026730:intron
GGAAATTGGAGAAGAGGTTA+AGG 0.417923 1_1:-50682279 Msa0026730:five_prime_UTR
CGTATAGAAACAAGCAAGAC+TGG 0.418415 1_1:+50675543 None:intergenic
TGCAAGATAGTAGTACGATT+TGG 0.419145 1_1:-50675936 Msa0026730:three_prime_UTR
TTGCAGGCGCTAGAGCAAAT+TGG 0.422109 1_1:-50675989 Msa0026730:intron
TGTATATACTATATATATTC+CGG 0.424719 1_1:-50675756 Msa0026730:three_prime_UTR
AAATTGACATGCAGGAATGA+TGG 0.432438 1_1:-50680723 Msa0026730:intron
TGGGTTGGTGGGAGTATTAG+TGG 0.444701 1_1:-50682563 None:intergenic
TACTCTTGTAGCTTCAACAT+TGG 0.455200 1_1:-50681107 Msa0026730:intron
GGCTCTGGGAAGACAACTGT+GGG 0.455572 1_1:-50680701 Msa0026730:CDS
TATACATCTGGTTAGAGTGT+TGG 0.458073 1_1:-50682354 Msa0026730:five_prime_UTR
ATTCCTGAAGTTAAATATAA+CGG 0.460325 1_1:+50675443 None:intergenic
GCCAAAAGAATTGCAGCTGT+TGG 0.465458 1_1:-50676750 Msa0026730:CDS
CATGCAGGAATGATGGGCTC+TGG 0.472739 1_1:-50680716 Msa0026730:intron
AAAGCACCAATTAAGATCCA+TGG 0.488358 1_1:+50675571 None:intergenic
ATGTAGAAGAGGGCGAGAAT+TGG 0.491757 1_1:+50676725 None:intergenic
AATCAATTCTCACCGAGCTT+CGG 0.500631 1_1:-50682507 Msa0026730:five_prime_UTR
TGTATTCCCATTGTATGTAA+TGG 0.502205 1_1:-50682118 Msa0026730:exon
CGACCCCACTTAGTGGGATA+AGG 0.503384 1_1:-50675729 Msa0026730:three_prime_UTR
TGTTCTTACAACAATATGCC+AGG 0.503807 1_1:-50681949 Msa0026730:intron
TAGCATCCATTACATACAAT+GGG 0.504566 1_1:+50682112 None:intergenic
TATTGAGAGATGAGGGAATG+AGG 0.506655 1_1:+50682405 None:intergenic
TGAGGAAGAGTTGATTCTAA+AGG 0.507211 1_1:-50681059 Msa0026730:intron
TTCTAATGAGACTCTAGCAT+TGG 0.514662 1_1:+50676484 None:intergenic
CGGTTGACGACCCCACTTAG+TGG 0.520350 1_1:-50675736 Msa0026730:three_prime_UTR
AATTGACATGCAGGAATGAT+GGG 0.520917 1_1:-50680722 Msa0026730:intron
AAAAGAATATTGAGAGATGA+GGG 0.522483 1_1:+50682398 None:intergenic
GAGCGCTGTATATATGTTGT+TGG 0.523615 1_1:-50680824 Msa0026730:intron
GGTCCGACTCAGAGAACAAC+CGG 0.524299 1_1:+50682029 None:intergenic
TTTATGCGCACGCACTTGTG+TGG 0.527957 1_1:-50682301 Msa0026730:five_prime_UTR
ATACAGCGCTCATTTAAATA+CGG 0.538346 1_1:+50680836 None:intergenic
AGATGTACCAGTGGAAGCAT+TGG 0.540460 1_1:-50676772 Msa0026730:CDS
GAAATTGGAGAAGAGGTTAA+GGG 0.546637 1_1:-50682278 Msa0026730:five_prime_UTR
TAATAGTGATACATTGATTG+AGG 0.548025 1_1:-50678745 Msa0026730:intron
CCTCTTCTACATGATGAAGC+AGG 0.552664 1_1:-50676714 Msa0026730:CDS
ACATTCGTTTCAGTGTTTAC+GGG 0.553844 1_1:-50682142 Msa0026730:five_prime_UTR
TAGAATCAACTCTTCCTCAA+GGG 0.555001 1_1:+50681063 None:intergenic
TTCAGCCTTATCCCACTAAG+TGG 0.557471 1_1:+50675724 None:intergenic
AAAAGTTATGCATGAAAATG+TGG 0.560894 1_1:+50675848 None:intergenic
TCAGCCTTATCCCACTAAGT+GGG 0.561700 1_1:+50675725 None:intergenic
CATTCGTTTCAGTGTTTACG+GGG 0.562010 1_1:-50682141 Msa0026730:five_prime_UTR
GTAGCATCCATTACATACAA+TGG 0.563066 1_1:+50682111 None:intergenic
AGAATCAACTCTTCCTCAAG+GGG 0.563689 1_1:+50681064 None:intergenic
ATCTTTCTTTCGTGATAAGG+AGG 0.564203 1_1:-50678673 Msa0026730:intron
TTAGAATCAACTCTTCCTCA+AGG 0.565895 1_1:+50681062 None:intergenic
TGTGTGGGAAATTGGAGAAG+AGG 0.570936 1_1:-50682285 Msa0026730:five_prime_UTR
AGAATAGTGAACGATTTGGA+AGG 0.572488 1_1:+50682441 None:intergenic
TAATGGATAAATAGTAGAGT+GGG 0.574564 1_1:+50682375 None:intergenic
GGTTGACGACCCCACTTAGT+GGG 0.576686 1_1:-50675735 Msa0026730:three_prime_UTR
TTATGCGCACGCACTTGTGT+GGG 0.584022 1_1:-50682300 Msa0026730:five_prime_UTR
CTCAAACGCACAAACAAACG+AGG 0.585873 1_1:-50682473 Msa0026730:five_prime_UTR
ATGCAGGAATGATGGGCTCT+GGG 0.586330 1_1:-50680715 Msa0026730:intron
TTGGTGGGAGTATTAGTGGT+GGG 0.588189 1_1:-50682559 Msa0026730:five_prime_UTR
TCACACCATTCGGCACAAGA+AGG 0.588318 1_1:-50681989 Msa0026730:CDS
AAGCACCAATTAAGATCCAT+GGG 0.588698 1_1:+50675572 None:intergenic
TAACCGGTTGTTCTCTGAGT+CGG 0.590699 1_1:-50682032 Msa0026730:CDS
CCTGCTTCATCATGTAGAAG+AGG 0.591927 1_1:+50676714 None:intergenic
CTGCTTCATCATGTAGAAGA+GGG 0.599098 1_1:+50676715 None:intergenic
GTTGGTGGGAGTATTAGTGG+TGG 0.601755 1_1:-50682560 None:intergenic
AGAAACCTTCTTGTGCCGAA+TGG 0.602096 1_1:+50681984 None:intergenic
ATAATGGATAAATAGTAGAG+TGG 0.603047 1_1:+50682374 None:intergenic
AGGGCATAAGTTTCCCCTTG+AGG 0.610167 1_1:-50681077 Msa0026730:CDS
TGAGACTCTAGCATTGGCGT+TGG 0.610419 1_1:+50676490 None:intergenic
GGTTGTTCTCTGAGTCGGAC+CGG 0.612933 1_1:-50682027 Msa0026730:CDS
GAAAAGAATATTGAGAGATG+AGG 0.613915 1_1:+50682397 None:intergenic
GCTTCAACATTGGAATCTGG+AGG 0.615047 1_1:-50681097 Msa0026730:CDS
GGGCTCTGGGAAGACAACTG+TGG 0.617107 1_1:-50680702 Msa0026730:CDS
AACAACACTGCACAACAGCA+TGG 0.617841 1_1:+50675902 None:intergenic
GAGCGATTTATACCGAAGCT+CGG 0.626447 1_1:+50682495 None:intergenic
GTATAGAAACAAGCAAGACT+GGG 0.626959 1_1:+50675544 None:intergenic
TGTTTGGTTAGATGTACCAG+TGG 0.652145 1_1:-50676781 Msa0026730:CDS
CAGCCTTATCCCACTAAGTG+GGG 0.657129 1_1:+50675726 None:intergenic
CTTCAACATTGGAATCTGGA+GGG 0.659832 1_1:-50681096 Msa0026730:CDS
TCAAACGCACAAACAAACGA+GGG 0.698641 1_1:-50682472 Msa0026730:five_prime_UTR
AGCAGGAGATGCATACACAG+CGG 0.786140 1_1:-50676697 Msa0026730:intron
GCTCTGGGAAGACAACTGTG+GGG 0.798287 1_1:-50680700 Msa0026730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr1_1:50677520-50677539 Msa0026730:intron 0.0%
!! ATATATATATATATATATAT+AGG - chr1_1:50677521-50677540 Msa0026730:intron 0.0%
!! TATATATATATATATATATA+GGG - chr1_1:50677520-50677539 Msa0026730:intron 0.0%
!!! TAATTTTTATAAATTTATTA+AGG - chr1_1:50678597-50678616 Msa0026730:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr1_1:50677521-50677540 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr1_1:50677520-50677539 None:intergenic 0.0%
!!! AATTTTTTATTAAATTTTGG+TGG + chr1_1:50677908-50677927 None:intergenic 10.0%
!! TAAAATTTATTGTAAATAGA+AGG + chr1_1:50678796-50678815 None:intergenic 10.0%
!!! ATATAAATATTTGTATGTTT+TGG - chr1_1:50680906-50680925 Msa0026730:intron 10.0%
!! TGTTATTATGAAAATATTAG+TGG + chr1_1:50675475-50675494 None:intergenic 15.0%
!! CTGAAAATTATATTATAGAT+TGG - chr1_1:50675778-50675797 Msa0026730:three_prime_UTR 15.0%
!! TTGTTTAAAAAATATCATGT+AGG - chr1_1:50677653-50677672 Msa0026730:intron 15.0%
!! TGTTTAAAAAATATCATGTA+GGG - chr1_1:50677654-50677673 Msa0026730:intron 15.0%
!!! ACTTTAAAGAAAACAATATT+TGG + chr1_1:50678670-50678689 None:intergenic 15.0%
!!! TAAATTTTAATAGAGACTAA+AGG - chr1_1:50678807-50678826 Msa0026730:intron 15.0%
!!! AAATTTTAATAGAGACTAAA+GGG - chr1_1:50678808-50678827 Msa0026730:intron 15.0%
!! TACATTTAATATTTGATATG+AGG - chr1_1:50679005-50679024 Msa0026730:intron 15.0%
!! TATTATGCAATAGATAAAAA+CGG - chr1_1:50679074-50679093 Msa0026730:intron 15.0%
!!! ATGTTATTTTAAACAAAGTT+GGG + chr1_1:50680304-50680323 None:intergenic 15.0%
!!! AATGTTATTTTAAACAAAGT+TGG + chr1_1:50680305-50680324 None:intergenic 15.0%
!!! TAATTTGTATACCAATTAAT+AGG + chr1_1:50680814-50680833 None:intergenic 15.0%
!! AAACATCAAAAGATAAAAAA+TGG + chr1_1:50680851-50680870 None:intergenic 15.0%
!! TGTGAATTTAATCATAAATA+AGG + chr1_1:50680942-50680961 None:intergenic 15.0%
!!! TACTAAAACATCAAATATTT+TGG - chr1_1:50681042-50681061 Msa0026730:intron 15.0%
!! AAACATCAAAAGAAAAAAAA+TGG - chr1_1:50681083-50681102 Msa0026730:CDS 15.0%
!!! ATATTAATCATCCATAATTT+TGG - chr1_1:50681379-50681398 Msa0026730:intron 15.0%
!!! AAATATTTTTTATGCAAGTT+TGG + chr1_1:50681408-50681427 None:intergenic 15.0%
!! TGTATATACTATATATATTC+CGG - chr1_1:50682249-50682268 Msa0026730:intron 15.0%
!!! AATTGACATTGTTTTTGTTT+TGG - chr1_1:50676099-50676118 Msa0026730:intron 20.0%
!!! TTTGTTTTAGAAAGTAACAA+TGG + chr1_1:50676558-50676577 None:intergenic 20.0%
!! TTATTTAATATGCTCATACA+AGG - chr1_1:50676809-50676828 Msa0026730:intron 20.0%
!! AATATCAGAAACAAAATGTA+AGG + chr1_1:50676879-50676898 None:intergenic 20.0%
!!! ATATTAAAATCTGAGATGAA+TGG + chr1_1:50677793-50677812 None:intergenic 20.0%
!!! ATTTCCAATTTAAAATTCGA+AGG + chr1_1:50677845-50677864 None:intergenic 20.0%
!!! TCGAATTTTAAATTGGAAAT+TGG - chr1_1:50677845-50677864 Msa0026730:intron 20.0%
!! TTAAATTGGAAATTGGATTT+AGG - chr1_1:50677852-50677871 Msa0026730:intron 20.0%
!!! AAATCGTTTTCTTTAAACAA+TGG - chr1_1:50677939-50677958 Msa0026730:intron 20.0%
!!! TTTTAATTCATGAATATCCA+TGG - chr1_1:50677999-50678018 Msa0026730:intron 20.0%
!!! ATTGAAAGTTTTCTAAGAAA+TGG - chr1_1:50678025-50678044 Msa0026730:intron 20.0%
!! AAACAGAGAACAAATATTAA+TGG - chr1_1:50678095-50678114 Msa0026730:intron 20.0%
!!! AACCATTTGATTTAATCTAA+GGG - chr1_1:50678312-50678331 Msa0026730:intron 20.0%
!!! ATTAGCCTAAATAATTAAGT+AGG + chr1_1:50678581-50678600 None:intergenic 20.0%
!!! TCAATTTTGTAACTAACTTA+AGG + chr1_1:50678773-50678792 None:intergenic 20.0%
!! TTCATATTCAAGTGATATTA+AGG - chr1_1:50679039-50679058 Msa0026730:intron 20.0%
!! TCATATTCAAGTGATATTAA+GGG - chr1_1:50679040-50679059 Msa0026730:intron 20.0%
!! ATTATGCAATAGATAAAAAC+GGG - chr1_1:50679075-50679094 Msa0026730:intron 20.0%
!! AAAACAATTACTTTGATTCA+TGG - chr1_1:50679190-50679209 Msa0026730:intron 20.0%
!! TTGATTCATGGTTATATTAT+AGG - chr1_1:50679202-50679221 Msa0026730:intron 20.0%
!! CGATTATATCAAATTATTAC+CGG + chr1_1:50679532-50679551 None:intergenic 20.0%
!! AATAAAAGATCTGTAAATGT+GGG + chr1_1:50679870-50679889 None:intergenic 20.0%
!!! AGTGAGTTTTTTTTTTTTGA+GGG - chr1_1:50680046-50680065 Msa0026730:intron 20.0%
!!! TGTTATTTTAAACAAAGTTG+GGG + chr1_1:50680303-50680322 None:intergenic 20.0%
!!! AAAGGTTTTCATAAACAATT+AGG - chr1_1:50680369-50680388 Msa0026730:intron 20.0%
!! TAATAGTCAAACAGAATAAT+AGG + chr1_1:50680635-50680654 None:intergenic 20.0%
!! ATCAAAAGATAAAAAATGGA+GGG + chr1_1:50680847-50680866 None:intergenic 20.0%
!!! TAACTCCTTTAATAGTTTTA+TGG - chr1_1:50680981-50681000 Msa0026730:intron 20.0%
!! ATCAAAAGAAAAAAAATGGA+GGG - chr1_1:50681087-50681106 Msa0026730:CDS 20.0%
! AAAAGAATATTGAGAGATGA+GGG + chr1_1:50675610-50675629 None:intergenic 25.0%
!! TAATGGATAAATAGTAGAGT+GGG + chr1_1:50675633-50675652 None:intergenic 25.0%
!!! ATAATGGATAAATAGTAGAG+TGG + chr1_1:50675634-50675653 None:intergenic 25.0%
! CTATTTATCCATTATACATC+TGG - chr1_1:50675639-50675658 Msa0026730:three_prime_UTR 25.0%
!! TTTTCAAATGTTTCATCTAC+CGG - chr1_1:50675920-50675939 Msa0026730:three_prime_UTR 25.0%
!!! TGGAAACTCTAGTTTTTTTT+TGG - chr1_1:50676119-50676138 Msa0026730:intron 25.0%
!! TTATTTGACTAGAGTGATTT+TGG + chr1_1:50676193-50676212 None:intergenic 25.0%
!! TGTTATTTGAATACCTATGT+CGG - chr1_1:50676239-50676258 Msa0026730:intron 25.0%
! ATAACGTGATTAATATGCAA+TGG - chr1_1:50676268-50676287 Msa0026730:intron 25.0%
! TGATTATCTTGAGTAATTAC+CGG - chr1_1:50676305-50676324 Msa0026730:intron 25.0%
! TTGAATATAATCACATGTGT+CGG + chr1_1:50676402-50676421 None:intergenic 25.0%
! TGACATCAACAATAATTAGA+AGG + chr1_1:50676441-50676460 None:intergenic 25.0%
! AGTTAACTTAAAGAGCTTAT+TGG + chr1_1:50676520-50676539 None:intergenic 25.0%
!!! AAGCTCTTTAAGTTAACTTT+TGG - chr1_1:50676522-50676541 Msa0026730:CDS 25.0%
!!! TTTTAGAAAGTAACAATGGA+TGG + chr1_1:50676554-50676573 None:intergenic 25.0%
! TGCTCGATTAATTGAAAAAA+AGG - chr1_1:50676742-50676761 Msa0026730:CDS 25.0%
! AAATGTAAGGATACAAAATG+AGG + chr1_1:50676866-50676885 None:intergenic 25.0%
!!! TATTGGTTCAAGTAAGAAAA+TGG + chr1_1:50677119-50677138 None:intergenic 25.0%
!! GATCTATTCTGCAATTTTAT+TGG + chr1_1:50677136-50677155 None:intergenic 25.0%
! CAATACAAGTATGATTACTT+TGG - chr1_1:50677243-50677262 Msa0026730:intron 25.0%
!! TTAGCTATTCATTTTGTGAT+TGG - chr1_1:50677347-50677366 Msa0026730:intron 25.0%
! AATTTCTTGTCTTTGTTCAT+AGG - chr1_1:50677380-50677399 Msa0026730:intron 25.0%
! ATTTCTTGTCTTTGTTCATA+GGG - chr1_1:50677381-50677400 Msa0026730:intron 25.0%
! ATCAAATGTACCATTTGAAT+AGG - chr1_1:50677456-50677475 Msa0026730:intron 25.0%
! TTCTTTATTGCCTATTCAAA+TGG + chr1_1:50677469-50677488 None:intergenic 25.0%
! ATGGATCAAATATTAACCAT+TGG - chr1_1:50677603-50677622 Msa0026730:intron 25.0%
! AACCATTGGATTAAAATCAA+AGG - chr1_1:50677617-50677636 Msa0026730:intron 25.0%
! AAAACAGTGGAATAGAATTA+TGG + chr1_1:50677743-50677762 None:intergenic 25.0%
! ATGCAAATTATCAAAAACAG+TGG + chr1_1:50677756-50677775 None:intergenic 25.0%
!! TTCACCTTCGAATTTTAAAT+TGG - chr1_1:50677838-50677857 Msa0026730:intron 25.0%
!! CAACCATTTGATTTAATCTA+AGG - chr1_1:50678311-50678330 Msa0026730:intron 25.0%
! ATTTATAATGAGAGATGAGA+GGG + chr1_1:50678349-50678368 None:intergenic 25.0%
! AATTTATAATGAGAGATGAG+AGG + chr1_1:50678350-50678369 None:intergenic 25.0%
! ACTTGCACCTTAATAAATTT+AGG + chr1_1:50678546-50678565 None:intergenic 25.0%
! CTAAATAATTAAGTAGGTGT+AGG + chr1_1:50678575-50678594 None:intergenic 25.0%
! CTACACCTACTTAATTATTT+AGG - chr1_1:50678573-50678592 Msa0026730:intron 25.0%
!! ATATTTGGAATGATGAAAGT+GGG + chr1_1:50678655-50678674 None:intergenic 25.0%
!! AATATTTGGAATGATGAAAG+TGG + chr1_1:50678656-50678675 None:intergenic 25.0%
! TTCTTTATAGCCTATTCAAA+TGG + chr1_1:50678953-50678972 None:intergenic 25.0%
! CATATTCAAGTGATATTAAG+GGG - chr1_1:50679041-50679060 Msa0026730:intron 25.0%
! TTATGCAATAGATAAAAACG+GGG - chr1_1:50679076-50679095 Msa0026730:intron 25.0%
!!! CAAAGTAATTGTTTTGCAAT+AGG + chr1_1:50679185-50679204 None:intergenic 25.0%
!! TAATAGTGATACATTGATTG+AGG - chr1_1:50679260-50679279 Msa0026730:intron 25.0%
! TATATAGAAGCAGAAAACAA+GGG + chr1_1:50679464-50679483 None:intergenic 25.0%
! ATATATAGAAGCAGAAAACA+AGG + chr1_1:50679465-50679484 None:intergenic 25.0%
! ATATATTATAAACTGCTCCA+AGG - chr1_1:50679479-50679498 Msa0026730:intron 25.0%
! CAATAAAAGATCTGTAAATG+TGG + chr1_1:50679871-50679890 None:intergenic 25.0%
! ATTGGTTGATTGTACATATA+TGG - chr1_1:50679988-50680007 Msa0026730:intron 25.0%
!!! GAGTGAGTTTTTTTTTTTTG+AGG - chr1_1:50680045-50680064 Msa0026730:intron 25.0%
!!! GTGAGTTTTTTTTTTTTGAG+GGG - chr1_1:50680047-50680066 Msa0026730:intron 25.0%
! TTAGTTTACATTTATAGTCG+AGG - chr1_1:50680220-50680239 Msa0026730:intron 25.0%
!!! GTTATTTTAAACAAAGTTGG+GGG + chr1_1:50680302-50680321 None:intergenic 25.0%
!!! TATGAAAACCTTTTTAAGAG+AGG + chr1_1:50680362-50680381 None:intergenic 25.0%
! ATAAACAATTAGGTACTTAC+TGG - chr1_1:50680379-50680398 Msa0026730:intron 25.0%
! TTGTTAAATAACAGCTATAG+CGG - chr1_1:50680431-50680450 Msa0026730:intron 25.0%
!! TTGTAACAAGCTTTTATTGA+AGG + chr1_1:50680525-50680544 None:intergenic 25.0%
!!! TTCAATAAAAGCTTGTTACA+AGG - chr1_1:50680524-50680543 Msa0026730:intron 25.0%
! TAAGATATTGTGAATTGTTC+CGG - chr1_1:50680661-50680680 Msa0026730:CDS 25.0%
! TCAAAAGATAAAAAATGGAG+GGG + chr1_1:50680846-50680865 None:intergenic 25.0%
! CATCAAAAGATAAAAAATGG+AGG + chr1_1:50680848-50680867 None:intergenic 25.0%
! ACACACCATAAAACTATTAA+AGG + chr1_1:50680989-50681008 None:intergenic 25.0%
! CATCAAAAGAAAAAAAATGG+AGG - chr1_1:50681086-50681105 Msa0026730:CDS 25.0%
! TACAAATACATGTAAAGATG+AGG + chr1_1:50681163-50681182 None:intergenic 25.0%
! CATCTTTACATGTATTTGTA+TGG - chr1_1:50681163-50681182 Msa0026730:intron 25.0%
! TACATGTATTTGTATGGAAA+TGG - chr1_1:50681169-50681188 Msa0026730:intron 25.0%
!! AAGATATGTGTATTTTGTCA+TGG - chr1_1:50681619-50681638 Msa0026730:intron 25.0%
!!! TCACTCTTTTTTATTGGATA+AGG + chr1_1:50681696-50681715 None:intergenic 25.0%
!!! ACAAGATCACTCTTTTTTAT+TGG + chr1_1:50681702-50681721 None:intergenic 25.0%
! TTGCAATTTGATTGTTATCA+TGG + chr1_1:50681763-50681782 None:intergenic 25.0%
! AAATTGAAATGGAGTTACAA+AGG + chr1_1:50681905-50681924 None:intergenic 25.0%
!!! CATTTCAATTTGTTAGCTTT+GGG - chr1_1:50681914-50681933 Msa0026730:intron 25.0%
! AAGGATTATTAGATTTGCAT+CGG + chr1_1:50681989-50682008 None:intergenic 25.0%
! AAAAGTTATGCATGAAAATG+TGG + chr1_1:50682160-50682179 None:intergenic 25.0%
! TAAATTCAAACTGTTGCTAT+TGG + chr1_1:50682209-50682228 None:intergenic 25.0%
! TAGCAACAGTTTGAATTTAT+AGG - chr1_1:50682210-50682229 Msa0026730:intron 25.0%
!!! TTTTTGCTGTAAATTGAGTT+CGG - chr1_1:50682330-50682349 Msa0026730:five_prime_UTR 25.0%
!! ACACTATCTTCTTCTATTTT+GGG - chr1_1:50682407-50682426 Msa0026730:five_prime_UTR 25.0%
AGAAAGAATAGTGAACGATT+TGG + chr1_1:50675571-50675590 None:intergenic 30.0%
GAAAAGAATATTGAGAGATG+AGG + chr1_1:50675611-50675630 None:intergenic 30.0%
GCAAAATCAATTTCCCAAAT+TGG + chr1_1:50675833-50675852 None:intergenic 30.0%
TAAACACTGAAACGAATGTT+TGG + chr1_1:50675862-50675881 None:intergenic 30.0%
AACATTCGTTTCAGTGTTTA+CGG - chr1_1:50675862-50675881 Msa0026730:three_prime_UTR 30.0%
TGTATTCCCATTGTATGTAA+TGG - chr1_1:50675887-50675906 Msa0026730:three_prime_UTR 30.0%
TAGCATCCATTACATACAAT+GGG + chr1_1:50675896-50675915 None:intergenic 30.0%
! GTTATTCTCACACATTTTTC+GGG + chr1_1:50675957-50675976 None:intergenic 30.0%
! GGTTATTCTCACACATTTTT+CGG + chr1_1:50675958-50675977 None:intergenic 30.0%
GAAAAATGTGTGAGAATAAC+CGG - chr1_1:50675957-50675976 Msa0026730:exon 30.0%
TGTTTAATTACAGCAAAACC+TGG + chr1_1:50676077-50676096 None:intergenic 30.0%
GATTATCTTGAGTAATTACC+GGG - chr1_1:50676306-50676325 Msa0026730:intron 30.0%
! GGTAAAAGCTAGCTTAATAT+TGG + chr1_1:50676716-50676735 None:intergenic 30.0%
!!! ATTAAGCTAGCTTTTACCAT+TGG - chr1_1:50676718-50676737 Msa0026730:CDS 30.0%
GGAATTTACTGCATATTTCA+AGG - chr1_1:50676763-50676782 Msa0026730:CDS 30.0%
! GTTTTGCTTAAAAGAATGGA+AGG + chr1_1:50677037-50677056 None:intergenic 30.0%
!! GATGGTTTTGCTTAAAAGAA+TGG + chr1_1:50677041-50677060 None:intergenic 30.0%
ATGATAGTACTATCTGTTGA+TGG + chr1_1:50677059-50677078 None:intergenic 30.0%
ATACAGCGCTCATTTAAATA+CGG + chr1_1:50677172-50677191 None:intergenic 30.0%
! ATGTTGTTGGTAAGTTTCTT+TGG - chr1_1:50677194-50677213 Msa0026730:intron 30.0%
ATACTTTCAAATTGACATGC+AGG - chr1_1:50677274-50677293 Msa0026730:intron 30.0%
!! AGCCTTTGATTTTAATCCAA+TGG + chr1_1:50677622-50677641 None:intergenic 30.0%
TTGAAGCAAACAAGGATAAA+AGG + chr1_1:50677688-50677707 None:intergenic 30.0%
AATTCGAAGGTGAAAAAACT+AGG + chr1_1:50677832-50677851 None:intergenic 30.0%
TATTTGTGCTCTTACAAGTT+CGG - chr1_1:50677881-50677900 Msa0026730:intron 30.0%
!! ACAATGGATTAGAAGAATAG+AGG - chr1_1:50677955-50677974 Msa0026730:intron 30.0%
AGAAAACTTTCAATTGTCCA+TGG + chr1_1:50678019-50678038 None:intergenic 30.0%
GAAATGGAAAAACAGTAGAA+AGG - chr1_1:50678041-50678060 Msa0026730:intron 30.0%
! AAGTTTTCATCCTTTCTCAA+TGG - chr1_1:50678072-50678091 Msa0026730:intron 30.0%
GACCCTTAGATTAAATCAAA+TGG + chr1_1:50678317-50678336 None:intergenic 30.0%
! AACTTGCACCTTAATGTTTT+GGG + chr1_1:50678506-50678525 None:intergenic 30.0%
!! TAACTTGCACCTTAATGTTT+TGG + chr1_1:50678507-50678526 None:intergenic 30.0%
ACACCCACCTAAATTTATTA+AGG - chr1_1:50678536-50678555 Msa0026730:intron 30.0%
GCACCTTAATAAATTTAGGT+GGG + chr1_1:50678542-50678561 None:intergenic 30.0%
TGCACCTTAATAAATTTAGG+TGG + chr1_1:50678543-50678562 None:intergenic 30.0%
!!! CATAGTTGTTTTTCATGCAT+TGG + chr1_1:50678749-50678768 None:intergenic 30.0%
GGTGTTAGTAAAATACTAGT+GGG - chr1_1:50678829-50678848 Msa0026730:intron 30.0%
ACCAAATGTACCATTTGAAT+AGG - chr1_1:50678940-50678959 Msa0026730:intron 30.0%
TATGCAATAGATAAAAACGG+GGG - chr1_1:50679077-50679096 Msa0026730:intron 30.0%
! TGATACATTGATTGAGGAAA+AGG - chr1_1:50679266-50679285 Msa0026730:intron 30.0%
GCTGATATATTCAAACTCTA+TGG - chr1_1:50679306-50679325 Msa0026730:intron 30.0%
AGAATCTTTCTTTCGTGATA+AGG - chr1_1:50679329-50679348 Msa0026730:intron 30.0%
! TGTAAAGTACCATCATGAAT+TGG + chr1_1:50679674-50679693 None:intergenic 30.0%
TGCTACATACCAATTCATAA+TGG - chr1_1:50679710-50679729 Msa0026730:intron 30.0%
TGTCAAGTACCATTATGAAT+TGG + chr1_1:50679722-50679741 None:intergenic 30.0%
! TAGTTTGTAGAGACAACAAA+TGG - chr1_1:50679943-50679962 Msa0026730:intron 30.0%
AGTTTGTAGAGACAACAAAT+GGG - chr1_1:50679944-50679963 Msa0026730:intron 30.0%
TATGTACAATCAACCAATAG+AGG + chr1_1:50679986-50680005 None:intergenic 30.0%
CAAACAGAATAATAGGAGTT+AGG + chr1_1:50680628-50680647 None:intergenic 30.0%
AATGACAAGTTTATGCATCA+AGG + chr1_1:50680764-50680783 None:intergenic 30.0%
! GCATAAACTTGTCATTTCTA+CGG - chr1_1:50680768-50680787 Msa0026730:intron 30.0%
! CATAAACTTGTCATTTCTAC+GGG - chr1_1:50680769-50680788 Msa0026730:intron 30.0%
CAAAAGATAAAAAATGGAGG+GGG + chr1_1:50680845-50680864 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr1_1:50680858-50680877 Msa0026730:CDS 30.0%
ATTAAAGGAGTTATGACCTT+TGG + chr1_1:50680974-50680993 None:intergenic 30.0%
! TTATGGTGTGTTTTTCATCA+AGG - chr1_1:50680998-50681017 Msa0026730:intron 30.0%
! TATGGTGTGTTTTTCATCAA+GGG - chr1_1:50680999-50681018 Msa0026730:intron 30.0%
GTAAATTGTTTCGCATCAAT+AGG - chr1_1:50681330-50681349 Msa0026730:intron 30.0%
! AAGTTTGGTGACCAAAATTA+TGG + chr1_1:50681393-50681412 None:intergenic 30.0%
CCAAAGCTAACAAATTGAAA+TGG + chr1_1:50681916-50681935 None:intergenic 30.0%
!! CCATTTCAATTTGTTAGCTT+TGG - chr1_1:50681913-50681932 Msa0026730:intron 30.0%
! GCAAATTGGCAACTTTTTAA+AGG - chr1_1:50682030-50682049 Msa0026730:CDS 30.0%
!! TTTTTAAAGGCAGAAGATGA+TGG - chr1_1:50682043-50682062 Msa0026730:CDS 30.0%
! TTTTCATGCATAACTTTTGC+TGG - chr1_1:50682162-50682181 Msa0026730:intron 30.0%
! TTTCATGCATAACTTTTGCT+GGG - chr1_1:50682163-50682182 Msa0026730:intron 30.0%
TACAACATACAATCTCTTAG+AGG + chr1_1:50682382-50682401 None:intergenic 30.0%
! GACACTATCTTCTTCTATTT+TGG - chr1_1:50682406-50682425 Msa0026730:five_prime_UTR 30.0%
! AGAATAGTGAACGATTTGGA+AGG + chr1_1:50675567-50675586 None:intergenic 35.0%
CACTCTAACCAGATGTATAA+TGG + chr1_1:50675650-50675669 None:intergenic 35.0%
TATACATCTGGTTAGAGTGT+TGG - chr1_1:50675651-50675670 Msa0026730:three_prime_UTR 35.0%
GAAATTGGAGAAGAGGTTAA+GGG - chr1_1:50675727-50675746 Msa0026730:three_prime_UTR 35.0%
AGAAGAGGTTAAGGGTAATT+AGG - chr1_1:50675735-50675754 Msa0026730:three_prime_UTR 35.0%
ACATTCGTTTCAGTGTTTAC+GGG - chr1_1:50675863-50675882 Msa0026730:three_prime_UTR 35.0%
GTAGCATCCATTACATACAA+TGG + chr1_1:50675897-50675916 None:intergenic 35.0%
TGAAAAAGCTTCACACCATT+CGG - chr1_1:50676006-50676025 Msa0026730:intron 35.0%
TGTTCTTACAACAATATGCC+AGG - chr1_1:50676056-50676075 Msa0026730:intron 35.0%
! ATTTGTAGATGCTACTTGCT+AGG - chr1_1:50676154-50676173 Msa0026730:intron 35.0%
!!! CTAGAGTGATTTTGGTTTCA+TGG + chr1_1:50676185-50676204 None:intergenic 35.0%
! ACGTTATGTTTTTCCGACAT+AGG + chr1_1:50676255-50676274 None:intergenic 35.0%
! TTAGAAGTGTGTAGGTGTTA+CGG + chr1_1:50676336-50676355 None:intergenic 35.0%
AATGTTGCAAAAGCTGTTTG+TGG + chr1_1:50676589-50676608 None:intergenic 35.0%
TCAATTAATCGAGCATCCAA+TGG + chr1_1:50676737-50676756 None:intergenic 35.0%
GCATATTTCAAGGAAAAGTG+TGG - chr1_1:50676773-50676792 Msa0026730:CDS 35.0%
!!! GAGGAAGCACTTATTTTAGT+CGG + chr1_1:50676847-50676866 None:intergenic 35.0%
TACTCTTGTAGCTTCAACAT+TGG - chr1_1:50676898-50676917 Msa0026730:intron 35.0%
TAGAATCAACTCTTCCTCAA+GGG + chr1_1:50676945-50676964 None:intergenic 35.0%
TTAGAATCAACTCTTCCTCA+AGG + chr1_1:50676946-50676965 None:intergenic 35.0%
! TGAGGAAGAGTTGATTCTAA+AGG - chr1_1:50676946-50676965 Msa0026730:intron 35.0%
ATCATACTTGTATTGCATGC+CGG + chr1_1:50677238-50677257 None:intergenic 35.0%
AAATTGACATGCAGGAATGA+TGG - chr1_1:50677282-50677301 Msa0026730:intron 35.0%
AATTGACATGCAGGAATGAT+GGG - chr1_1:50677283-50677302 Msa0026730:intron 35.0%
! GCTACACAATTTACGTGTTT+TGG + chr1_1:50677419-50677438 None:intergenic 35.0%
TTCTCTGTTTCCATTGAGAA+AGG + chr1_1:50678085-50678104 None:intergenic 35.0%
AGAAACGTTTCAGCTTTCAA+AGG - chr1_1:50678209-50678228 Msa0026730:intron 35.0%
GAAACGTTTCAGCTTTCAAA+GGG - chr1_1:50678210-50678229 Msa0026730:intron 35.0%
! ACTTGCACCTTAATGTTTTG+GGG + chr1_1:50678505-50678524 None:intergenic 35.0%
AAAGTGGGTGTAAATTAGTG+AGG + chr1_1:50678640-50678659 None:intergenic 35.0%
GGGTGTTAGTAAAATACTAG+TGG - chr1_1:50678828-50678847 Msa0026730:intron 35.0%
!! TAACTTGCACCTTAGTGTTT+TGG - chr1_1:50678862-50678881 Msa0026730:intron 35.0%
! AACTTGCACCTTAGTGTTTT+GGG - chr1_1:50678863-50678882 Msa0026730:intron 35.0%
GCCTATTCAAATGGTACATT+TGG + chr1_1:50677460-50677479 None:intergenic 35.0%
TTGATTGAGGAAAAGGTTGA+TGG - chr1_1:50679273-50679292 Msa0026730:intron 35.0%
ATCTTTCTTTCGTGATAAGG+AGG - chr1_1:50679332-50679351 Msa0026730:intron 35.0%
AACATGTGTGAATGTCATGT+CGG - chr1_1:50679568-50679587 Msa0026730:intron 35.0%
GCTGAAATACCAATTCATGA+TGG - chr1_1:50679662-50679681 Msa0026730:intron 35.0%
AAAGATCTGTAAATGTGGGA+CGG + chr1_1:50679866-50679885 None:intergenic 35.0%
AGAAGAATATTTCTCCAACC+AGG - chr1_1:50679895-50679914 Msa0026730:intron 35.0%
GGTTGATTGTACATATATGG+CGG - chr1_1:50679991-50680010 Msa0026730:intron 35.0%
!!! TTTTTTTTTGAGGGGCTACT+AGG - chr1_1:50680055-50680074 Msa0026730:intron 35.0%
CTCTCATATTGTTAAAGCAG+AGG + chr1_1:50680091-50680110 None:intergenic 35.0%
TTTCCTATGATCAAATCAGC+TGG - chr1_1:50680188-50680207 Msa0026730:intron 35.0%
TTCCTATGATCAAATCAGCT+GGG - chr1_1:50680189-50680208 Msa0026730:intron 35.0%
TTACATTTATAGTCGAGGTC+TGG - chr1_1:50680225-50680244 Msa0026730:intron 35.0%
! CATTTGCTTTCTTGTTATGC+TGG - chr1_1:50680251-50680270 Msa0026730:intron 35.0%
!!! AGAGAGGAGGATTTGTTTTA+GGG + chr1_1:50680346-50680365 None:intergenic 35.0%
!! AAGAGAGGAGGATTTGTTTT+AGG + chr1_1:50680347-50680366 None:intergenic 35.0%
CAAATCCTCCTCTCTTAAAA+AGG - chr1_1:50680351-50680370 Msa0026730:intron 35.0%
!! GAAAACCTTTTTAAGAGAGG+AGG + chr1_1:50680359-50680378 None:intergenic 35.0%
! CTTACTGGTTGTAGTTCATA+AGG - chr1_1:50680394-50680413 Msa0026730:intron 35.0%
!! AAAAGCTTGTTACAAGGTTC+TGG - chr1_1:50680530-50680549 Msa0026730:intron 35.0%
!!! TAGCCTATGGTTTTGTAACA+CGG - chr1_1:50680685-50680704 Msa0026730:CDS 35.0%
ATTCACATGTGATAAGCCAA+AGG - chr1_1:50680955-50680974 Msa0026730:intron 35.0%
TTCTAATGAGACTCTAGCAT+TGG + chr1_1:50681524-50681543 None:intergenic 35.0%
ATCTTCCTGTTCTTTCTTAC+AGG + chr1_1:50681604-50681623 None:intergenic 35.0%
GCAGATATAGCAACAAAACT+AGG - chr1_1:50681809-50681828 Msa0026730:intron 35.0%
! ACAAATCAGACGCATCTTTT+CGG + chr1_1:50681835-50681854 None:intergenic 35.0%
TCCAACTGTAATTGCAATTG+AGG - chr1_1:50681856-50681875 Msa0026730:intron 35.0%
ACCTCAATTGCAATTACAGT+TGG + chr1_1:50681860-50681879 None:intergenic 35.0%
TGGGCAAACTAAAATGTTCA+CGG - chr1_1:50681933-50681952 Msa0026730:intron 35.0%
ATAATCCTTCTGTATCTTGC+AGG - chr1_1:50682000-50682019 Msa0026730:CDS 35.0%
TGCAAGATAGTAGTACGATT+TGG - chr1_1:50682069-50682088 Msa0026730:CDS 35.0%
AAGCACCAATTAAGATCCAT+GGG + chr1_1:50682436-50682455 None:intergenic 35.0%
! AAAGCACCAATTAAGATCCA+TGG + chr1_1:50682437-50682456 None:intergenic 35.0%
GTATAGAAACAAGCAAGACT+GGG + chr1_1:50682464-50682483 None:intergenic 35.0%
ACTAATGTGTGTTCTGTAGA+TGG + chr1_1:50682494-50682513 None:intergenic 35.0%
AATCAATTCTCACCGAGCTT+CGG - chr1_1:50675498-50675517 Msa0026730:three_prime_UTR 40.0%
TCAAACGCACAAACAAACGA+GGG - chr1_1:50675533-50675552 Msa0026730:three_prime_UTR 40.0%
TATTGAGAGATGAGGGAATG+AGG + chr1_1:50675603-50675622 None:intergenic 40.0%
!! TCTGGTTAGAGTGTTGGATT+TGG - chr1_1:50675657-50675676 Msa0026730:three_prime_UTR 40.0%
!! CTGGTTAGAGTGTTGGATTT+GGG - chr1_1:50675658-50675677 Msa0026730:three_prime_UTR 40.0%
GGAAATTGGAGAAGAGGTTA+AGG - chr1_1:50675726-50675745 Msa0026730:three_prime_UTR 40.0%
CATTCGTTTCAGTGTTTACG+GGG - chr1_1:50675864-50675883 Msa0026730:three_prime_UTR 40.0%
!!! TTCTCACACATTTTTCGGGT+CGG + chr1_1:50675953-50675972 None:intergenic 40.0%
!!! GTGAAGCTTTTTCAGTCTAC+CGG + chr1_1:50676000-50676019 None:intergenic 40.0%
! TAGAAGTGTGTAGGTGTTAC+GGG + chr1_1:50676335-50676354 None:intergenic 40.0%
! GCATTGGATTAGAAGTGTGT+AGG + chr1_1:50676344-50676363 None:intergenic 40.0%
CTTCTAATCCAATGCGTGTT+CGG - chr1_1:50676349-50676368 Msa0026730:intron 40.0%
TTCTAATCCAATGCGTGTTC+GGG - chr1_1:50676350-50676369 Msa0026730:intron 40.0%
ATCCAATCACAAGTAGCTCA+TGG - chr1_1:50676610-50676629 Msa0026730:intron 40.0%
TTCCATGAGCTACTTGTGAT+TGG + chr1_1:50676615-50676634 None:intergenic 40.0%
AAAATATACTCTCGCCAAGC+TGG + chr1_1:50676664-50676683 None:intergenic 40.0%
GTAGCTTCAACATTGGAATC+TGG - chr1_1:50676905-50676924 Msa0026730:intron 40.0%
CTTCAACATTGGAATCTGGA+GGG - chr1_1:50676909-50676928 Msa0026730:intron 40.0%
AGAATCAACTCTTCCTCAAG+GGG + chr1_1:50676944-50676963 None:intergenic 40.0%
! GAGCGCTGTATATATGTTGT+TGG - chr1_1:50677181-50677200 Msa0026730:intron 40.0%
TCATACTTGTATTGCATGCC+GGG + chr1_1:50677237-50677256 None:intergenic 40.0%
AAGCAATGAACTGAGAGGAA+GGG + chr1_1:50677714-50677733 None:intergenic 40.0%
AAACGAAGCAATGAACTGAG+AGG + chr1_1:50677719-50677738 None:intergenic 40.0%
CGAAGGTGAAAAAACTAGGA+AGG + chr1_1:50677828-50677847 None:intergenic 40.0%
ACGTAAATGCGTCTTCTTTC+TGG + chr1_1:50678127-50678146 None:intergenic 40.0%
TGTGAATGAGAATGATGTGC+AGG - chr1_1:50678164-50678183 Msa0026730:intron 40.0%
GTGAATGAGAATGATGTGCA+GGG - chr1_1:50678165-50678184 Msa0026730:intron 40.0%
! ACTTGCACCTTAGTGTTTTG+GGG - chr1_1:50678864-50678883 Msa0026730:intron 40.0%
CAATAGATAAAAACGGGGGA+GGG - chr1_1:50679081-50679100 Msa0026730:intron 40.0%
AATAGATAAAAACGGGGGAG+GGG - chr1_1:50679082-50679101 Msa0026730:intron 40.0%
TATAAACTGCTCCAAGGAGA+CGG - chr1_1:50679485-50679504 Msa0026730:intron 40.0%
GAATATTTCTCCAACCAGGT+AGG - chr1_1:50679899-50679918 Msa0026730:intron 40.0%
TGTGACATGGGTGGAAAAAA+AGG + chr1_1:50680114-50680133 None:intergenic 40.0%
CAAACCTGTATAGTTGGACA+GGG + chr1_1:50680153-50680172 None:intergenic 40.0%
TGTTGCCAAACCTGTATAGT+TGG + chr1_1:50680159-50680178 None:intergenic 40.0%
!! TACCCAGCTGATTTGATCAT+AGG + chr1_1:50680194-50680213 None:intergenic 40.0%
!!! GTTATGCTGGCTTCTAGTTT+TGG - chr1_1:50680264-50680283 Msa0026730:intron 40.0%
!!! GAGGATTTGTTTTAGGGAGT+AGG + chr1_1:50680340-50680359 None:intergenic 40.0%
TTACAAAACCATAGGCTAGC+CGG + chr1_1:50680683-50680702 None:intergenic 40.0%
TTGTTTACCATTTCAGACCG+AGG - chr1_1:50680723-50680742 Msa0026730:intron 40.0%
! AAACTTGTCATTTCTACGGG+TGG - chr1_1:50680772-50680791 Msa0026730:intron 40.0%
! GTGTGTTTTTCATCAAGGGT+AGG - chr1_1:50681003-50681022 Msa0026730:intron 40.0%
TGGAGGGAGTAATAGTATTG+AGG - chr1_1:50681103-50681122 Msa0026730:intron 40.0%
!! TTGTATGGAAATGGATTGCC+AGG - chr1_1:50681178-50681197 Msa0026730:intron 40.0%
TGCCAGGAAATATATGCACA+AGG - chr1_1:50681194-50681213 Msa0026730:intron 40.0%
GCCAGGAAATATATGCACAA+GGG - chr1_1:50681195-50681214 Msa0026730:intron 40.0%
CCAGGAAATATATGCACAAG+GGG - chr1_1:50681196-50681215 Msa0026730:intron 40.0%
CAGGAAATATATGCACAAGG+GGG - chr1_1:50681197-50681216 Msa0026730:intron 40.0%
TGTTTGGTTAGATGTACCAG+TGG - chr1_1:50681224-50681243 Msa0026730:intron 40.0%
! TCCAACAGCTGCAATTCTTT+TGG + chr1_1:50681259-50681278 None:intergenic 40.0%
CTGCTTCATCATGTAGAAGA+GGG + chr1_1:50681293-50681312 None:intergenic 40.0%
ACCAGTTGTAATTCACATGC+AGG - chr1_1:50681444-50681463 Msa0026730:intron 40.0%
!! TCTGCTCTTTTTGAAGAGAG+AGG - chr1_1:50681481-50681500 Msa0026730:intron 40.0%
CTGTTCTTTCTTACAGGATC+TGG + chr1_1:50681598-50681617 None:intergenic 40.0%
CAGATCCTGTAAGAAAGAAC+AGG - chr1_1:50681596-50681615 Msa0026730:intron 40.0%
! AATGGAGTTACAAAGGCATG+AGG + chr1_1:50681898-50681917 None:intergenic 40.0%
! AGTACGATTTGGCGCAATTA+AGG - chr1_1:50682080-50682099 Msa0026730:CDS 40.0%
CGTATAGAAACAAGCAAGAC+TGG + chr1_1:50682465-50682484 None:intergenic 40.0%
GAGCGATTTATACCGAAGCT+CGG + chr1_1:50675513-50675532 None:intergenic 45.0%
CTCAAACGCACAAACAAACG+AGG - chr1_1:50675532-50675551 Msa0026730:three_prime_UTR 45.0%
TGTGTGGGAAATTGGAGAAG+AGG - chr1_1:50675720-50675739 Msa0026730:three_prime_UTR 45.0%
!!! TCTCACACATTTTTCGGGTC+GGG + chr1_1:50675952-50675971 None:intergenic 45.0%
TAACCGGTTGTTCTCTGAGT+CGG - chr1_1:50675973-50675992 Msa0026730:CDS 45.0%
AGAAACCTTCTTGTGCCGAA+TGG + chr1_1:50676024-50676043 None:intergenic 45.0%
TCGGCACAAGAAGGTTTCTA+TGG - chr1_1:50676025-50676044 Msa0026730:intron 45.0%
TGATATTAGCCACACCAGCT+TGG - chr1_1:50676647-50676666 Msa0026730:intron 45.0%
GCTTCAACATTGGAATCTGG+AGG - chr1_1:50676908-50676927 Msa0026730:intron 45.0%
GTTGATGTCTCGTGATTACC+CGG - chr1_1:50677216-50677235 Msa0026730:intron 45.0%
AAGGGGAGTTGAAGCAAACA+AGG + chr1_1:50677696-50677715 None:intergenic 45.0%
AGCAATGAACTGAGAGGAAG+GGG + chr1_1:50677713-50677732 None:intergenic 45.0%
GAAGCAATGAACTGAGAGGA+AGG + chr1_1:50677715-50677734 None:intergenic 45.0%
GCATTTACGTTTCTGCACTG+AGG - chr1_1:50678137-50678156 Msa0026730:intron 45.0%
AATGAGAATGATGTGCAGGG+AGG - chr1_1:50678168-50678187 Msa0026730:intron 45.0%
! GAGAGGGTGTATCAAATGAG+AGG + chr1_1:50678375-50678394 None:intergenic 45.0%
ACACCCACCCCAAAACATTA+AGG - chr1_1:50678495-50678514 Msa0026730:intron 45.0%
!!! GCACCTTAATGTTTTGGGGT+GGG + chr1_1:50678501-50678520 None:intergenic 45.0%
!!! TGCACCTTAATGTTTTGGGG+TGG + chr1_1:50678502-50678521 None:intergenic 45.0%
GCAATAGATAAAAACGGGGG+AGG - chr1_1:50679080-50679099 Msa0026730:intron 45.0%
TTCGTGATAAGGAGGTCAGT+TGG - chr1_1:50679340-50679359 Msa0026730:intron 45.0%
GATAAGGAGGTCAGTTGGAA+AGG - chr1_1:50679345-50679364 Msa0026730:intron 45.0%
ATAAACTGCTCCAAGGAGAC+GGG - chr1_1:50679486-50679505 Msa0026730:intron 45.0%
TTGACACTTAGCAGTGTCAC+AGG - chr1_1:50679736-50679755 Msa0026730:intron 45.0%
! AGTTCCTTTTACCGAGTCAG+TGG - chr1_1:50679835-50679854 Msa0026730:intron 45.0%
!! CATTCCACTGACTCGGTAAA+AGG + chr1_1:50679842-50679861 None:intergenic 45.0%
TCTCCAACCAGGTAGGATTT+CGG - chr1_1:50679906-50679925 Msa0026730:intron 45.0%
TTACTAGCCGAAATCCTACC+TGG + chr1_1:50679916-50679935 None:intergenic 45.0%
GTAGAGACAACAAATGGGCA+TGG - chr1_1:50679949-50679968 Msa0026730:intron 45.0%
! GGAAAGAGTGTGACCTCTAT+TGG - chr1_1:50679970-50679989 Msa0026730:intron 45.0%
CTAGTAGCAAGCTGGAAAGA+GGG + chr1_1:50680025-50680044 None:intergenic 45.0%
! TTTTCCACCCATGTCACAGA+TGG - chr1_1:50680116-50680135 Msa0026730:intron 45.0%
CCAAACCTGTATAGTTGGAC+AGG + chr1_1:50680154-50680173 None:intergenic 45.0%
CCTGTCCAACTATACAGGTT+TGG - chr1_1:50680151-50680170 Msa0026730:intron 45.0%
CATTTATAGTCGAGGTCTGG+AGG - chr1_1:50680228-50680247 Msa0026730:intron 45.0%
! GTGTCTGATGATGACATGTG+CGG - chr1_1:50680583-50680602 Msa0026730:intron 45.0%
CGACCGTGTTACAAAACCAT+AGG + chr1_1:50680691-50680710 None:intergenic 45.0%
TTCAATGCCTCGGTCTGAAA+TGG + chr1_1:50680733-50680752 None:intergenic 45.0%
GGACAGCTTATTCAATGCCT+CGG + chr1_1:50680743-50680762 None:intergenic 45.0%
CTGTTGTGCGGCCTATTAAT+TGG - chr1_1:50680800-50680819 Msa0026730:intron 45.0%
CCCCTTGTGCATATATTTCC+TGG + chr1_1:50681199-50681218 None:intergenic 45.0%
! AGATGTACCAGTGGAAGCAT+TGG - chr1_1:50681233-50681252 Msa0026730:intron 45.0%
GCCAAAAGAATTGCAGCTGT+TGG - chr1_1:50681255-50681274 Msa0026730:intron 45.0%
ATGTAGAAGAGGGCGAGAAT+TGG + chr1_1:50681283-50681302 None:intergenic 45.0%
CCTGCTTCATCATGTAGAAG+AGG + chr1_1:50681294-50681313 None:intergenic 45.0%
CCTCTTCTACATGATGAAGC+AGG - chr1_1:50681291-50681310 Msa0026730:intron 45.0%
GCCTGCATGTGAATTACAAC+TGG + chr1_1:50681448-50681467 None:intergenic 45.0%
AACAACACTGCACAACAGCA+TGG + chr1_1:50682106-50682125 None:intergenic 45.0%
! TCAGCCTTATCCCACTAAGT+GGG + chr1_1:50682283-50682302 None:intergenic 45.0%
! TTCAGCCTTATCCCACTAAG+TGG + chr1_1:50682284-50682303 None:intergenic 45.0%
!! CTTCTATTTTGGGTCTCCCA+TGG - chr1_1:50682417-50682436 Msa0026730:five_prime_UTR 45.0%
GGTCTCCCATGGATCTTAAT+TGG - chr1_1:50682428-50682447 Msa0026730:five_prime_UTR 45.0%
!!! TTGAATTTTTTATTAAATTT+TGG + chr1_1:50677911-50677930 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG - chr1_1:50678462-50678481 Msa0026730:intron 5.0%
!! TATATATATATATATATATG+GGG + chr1_1:50677586-50677605 None:intergenic 5.0%
TTTATGCGCACGCACTTGTG+TGG - chr1_1:50675704-50675723 Msa0026730:three_prime_UTR 50.0%
TTATGCGCACGCACTTGTGT+GGG - chr1_1:50675705-50675724 Msa0026730:three_prime_UTR 50.0%
CACGCACTTGTGTGGGAAAT+TGG - chr1_1:50675712-50675731 Msa0026730:three_prime_UTR 50.0%
TGCCAGCAGAAGCTCCAATT+TGG - chr1_1:50675816-50675835 Msa0026730:three_prime_UTR 50.0%
GCCAGCAGAAGCTCCAATTT+GGG - chr1_1:50675817-50675836 Msa0026730:three_prime_UTR 50.0%
TCCCAAATTGGAGCTTCTGC+TGG + chr1_1:50675821-50675840 None:intergenic 50.0%
TCACACCATTCGGCACAAGA+AGG - chr1_1:50676016-50676035 Msa0026730:intron 50.0%
AGGGCATAAGTTTCCCCTTG+AGG - chr1_1:50676928-50676947 Msa0026730:intron 50.0%
!! ATGCAGGAATGATGGGCTCT+GGG - chr1_1:50677290-50677309 Msa0026730:intron 50.0%
ATGATGTGCAGGGAGGAAGA+TGG - chr1_1:50678175-50678194 Msa0026730:intron 50.0%
GCAGGGAGGAAGATGGAATA+TGG - chr1_1:50678182-50678201 Msa0026730:intron 50.0%
CAGAAGCGAGTAAACGTGAG+AGG - chr1_1:50678242-50678261 Msa0026730:intron 50.0%
AAGCGAGTAAACGTGAGAGG+AGG - chr1_1:50678245-50678264 Msa0026730:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_1:50678391-50678410 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_1:50678390-50678409 None:intergenic 50.0%
!!! TGCACCTTAGTGTTTTGGGG+TGG - chr1_1:50678867-50678886 Msa0026730:intron 50.0%
!!! GCACCTTAGTGTTTTGGGGT+GGG - chr1_1:50678868-50678887 Msa0026730:intron 50.0%
TGTCGCAAACTGTCACGTGT+CGG - chr1_1:50679591-50679610 Msa0026730:intron 50.0%
! GCACTGACACTTCACATCGA+AGG + chr1_1:50679629-50679648 None:intergenic 50.0%
TAGCCGAAATCCTACCTGGT+TGG + chr1_1:50679912-50679931 None:intergenic 50.0%
CCTAGTAGCAAGCTGGAAAG+AGG + chr1_1:50680026-50680045 None:intergenic 50.0%
!! CCTCTTTCCAGCTTGCTACT+AGG - chr1_1:50680023-50680042 Msa0026730:intron 50.0%
ACTCACTCCTAGTAGCAAGC+TGG + chr1_1:50680033-50680052 None:intergenic 50.0%
CCACTGTCCATCTGTGACAT+GGG + chr1_1:50680126-50680145 None:intergenic 50.0%
TCCACTGTCCATCTGTGACA+TGG + chr1_1:50680127-50680146 None:intergenic 50.0%
ACCACCCTGTCCAACTATAC+AGG - chr1_1:50680146-50680165 Msa0026730:intron 50.0%
ACCTGTATAGTTGGACAGGG+TGG + chr1_1:50680150-50680169 None:intergenic 50.0%
GCTGTATCGCTACAGTGTAG+CGG - chr1_1:50680455-50680474 Msa0026730:intron 50.0%
!! GAATTGTTCCGGCTAGCCTA+TGG - chr1_1:50680672-50680691 Msa0026730:CDS 50.0%
! CTTGTCATTTCTACGGGTGG+AGG - chr1_1:50680775-50680794 Msa0026730:intron 50.0%
! TGCACAAGGGGGTTAGTGTT+TGG - chr1_1:50681208-50681227 Msa0026730:intron 50.0%
! CTTTTGGCCAATGCTTCCAC+TGG + chr1_1:50681243-50681262 None:intergenic 50.0%
AGCAGGAGATGCATACACAG+CGG - chr1_1:50681308-50681327 Msa0026730:intron 50.0%
!! TGAGACTCTAGCATTGGCGT+TGG + chr1_1:50681518-50681537 None:intergenic 50.0%
TAGCGCCTGCAAGATACAGA+AGG + chr1_1:50682008-50682027 None:intergenic 50.0%
TTGCAGGCGCTAGAGCAAAT+TGG - chr1_1:50682016-50682035 Msa0026730:CDS 50.0%
! CAGCCTTATCCCACTAAGTG+GGG + chr1_1:50682282-50682301 None:intergenic 50.0%
!!! TTTTCGGGTCGGGTCAGAAC+CGG + chr1_1:50675942-50675961 None:intergenic 55.0%
GGTCCGACTCAGAGAACAAC+CGG + chr1_1:50675979-50675998 None:intergenic 55.0%
GGTTGTTCTCTGAGTCGGAC+CGG - chr1_1:50675978-50675997 Msa0026730:CDS 55.0%
! TGTAGGTGTTACGGGCTACC+CGG + chr1_1:50676327-50676346 None:intergenic 55.0%
GTCAACACCCGAACACGCAT+TGG + chr1_1:50676360-50676379 None:intergenic 55.0%
!! CGTGTTCGGGTGTTGACATG+TGG - chr1_1:50676363-50676382 Msa0026730:intron 55.0%
ATACTCTCGCCAAGCTGGTG+TGG + chr1_1:50676659-50676678 None:intergenic 55.0%
!! CATGCAGGAATGATGGGCTC+TGG - chr1_1:50677289-50677308 Msa0026730:intron 55.0%
!! GGCTCTGGGAAGACAACTGT+GGG - chr1_1:50677304-50677323 Msa0026730:intron 55.0%
!! GCTCTGGGAAGACAACTGTG+GGG - chr1_1:50677305-50677324 Msa0026730:intron 55.0%
GCACCCACCCCAAAACACTA+AGG + chr1_1:50678874-50678893 None:intergenic 55.0%
GGGGAGGGGTCAGTTATCAT+GGG - chr1_1:50679096-50679115 Msa0026730:intron 55.0%
! GGACGGACATTCCACTGACT+CGG + chr1_1:50679849-50679868 None:intergenic 55.0%
AGCAAGCTGGAAAGAGGGAG+TGG + chr1_1:50680020-50680039 None:intergenic 55.0%
CTGTCCATCTGTGACATGGG+TGG + chr1_1:50680123-50680142 None:intergenic 55.0%
CCCATGTCACAGATGGACAG+TGG - chr1_1:50680123-50680142 Msa0026730:intron 55.0%
CACTAAGTGGGGTCGTCAAC+CGG + chr1_1:50682271-50682290 None:intergenic 55.0%
GGTTGACGACCCCACTTAGT+GGG - chr1_1:50682270-50682289 Msa0026730:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_1:50682276-50682295 Msa0026730:five_prime_UTR 55.0%
!! GGGCTCTGGGAAGACAACTG+TGG - chr1_1:50677303-50677322 Msa0026730:intron 60.0%
GGGGGAGGGGTCAGTTATCA+TGG - chr1_1:50679095-50679114 Msa0026730:intron 60.0%
TCAGTGCTCTCCCGTCTCCT+TGG + chr1_1:50679499-50679518 None:intergenic 60.0%
!! GAGCACTGACACGTCGACAC+CGG - chr1_1:50679510-50679529 Msa0026730:intron 60.0%
CGGTTGACGACCCCACTTAG+TGG - chr1_1:50682269-50682288 Msa0026730:intron 60.0%
!! CGGGTGGAGGTGCTGTTGTG+CGG - chr1_1:50680788-50680807 Msa0026730:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50675449 50682578 50675449 ID=Msa0026730;Name=Msa0026730
chr1_1 mRNA 50675449 50682578 50675449 ID=Msa0026730-mRNA-1;Parent=Msa0026730;Name=Msa0026730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=359|0.75|0.88|1|0.75|0.77|9|516|226
chr1_1 exon 50675449 50676005 50675449 ID=Msa0026730-mRNA-1:exon:14720;Parent=Msa0026730-mRNA-1
chr1_1 exon 50676483 50676561 50676483 ID=Msa0026730-mRNA-1:exon:14719;Parent=Msa0026730-mRNA-1
chr1_1 exon 50676698 50676811 50676698 ID=Msa0026730-mRNA-1:exon:14718;Parent=Msa0026730-mRNA-1
chr1_1 exon 50678674 50678761 50678674 ID=Msa0026730-mRNA-1:exon:14717;Parent=Msa0026730-mRNA-1
chr1_1 exon 50680659 50680731 50680659 ID=Msa0026730-mRNA-1:exon:14716;Parent=Msa0026730-mRNA-1
chr1_1 exon 50680825 50680879 50680825 ID=Msa0026730-mRNA-1:exon:14715;Parent=Msa0026730-mRNA-1
chr1_1 exon 50681060 50681118 50681060 ID=Msa0026730-mRNA-1:exon:14714;Parent=Msa0026730-mRNA-1
chr1_1 exon 50681950 50682172 50681950 ID=Msa0026730-mRNA-1:exon:14713;Parent=Msa0026730-mRNA-1
chr1_1 exon 50682271 50682578 50682271 ID=Msa0026730-mRNA-1:exon:14712;Parent=Msa0026730-mRNA-1
chr1_1 five_prime_UTR 50682271 50682578 50682271 ID=Msa0026730-mRNA-1:five_prime_utr;Parent=Msa0026730-mRNA-1
chr1_1 five_prime_UTR 50682122 50682172 50682122 ID=Msa0026730-mRNA-1:five_prime_utr;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50681950 50682121 50681950 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50681060 50681118 50681060 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50680825 50680879 50680825 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50680659 50680731 50680659 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50678674 50678761 50678674 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50676698 50676811 50676698 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50676483 50676561 50676483 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 CDS 50675965 50676005 50675965 ID=Msa0026730-mRNA-1:cds;Parent=Msa0026730-mRNA-1
chr1_1 three_prime_UTR 50675449 50675964 50675449 ID=Msa0026730-mRNA-1:three_prime_utr;Parent=Msa0026730-mRNA-1
Gene Sequence

>Msa0026730

ATGGATGCTACATCTTTTCAAATGTTTCATCTACCGGTTCTGACCCGACCCGAAAAATGTGTGAGAATAACCGGTTGTTCTCTGAGTCGGACCGGTAGACTGAAAAAGCTTCACACCATTCGGCACAAGAAGGTTTCTATGGAAGTTGCTTGTTCTTACAACAATATGCCAGCTTCAACATTGGAATCTGGAGGGCATAAGTTTCCCCTTGAGGAAGAGTTGATTCTAAAGAATAGATCGCAACAGATTCTGCCGTATTTAAATGAGCGCTGTATATATGTTGTTGGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAAATTATGTCGCAAGCGCTTAGCTATTCATTTTGTGATTGTGATACATTGATTGAGGAAAAGGTTGATGGAAACTCTGTAGCTGATATATTCAAACTCTATGGAGAATCTTTCTTTCGTGATAAGGAGGGGGTTAGTGTTTGGTTAGATGTACCAGTGGAAGCATTGGCCAAAAGAATTGCAGCTGTTGGAACCAATTCTCGCCCTCTTCTACATGATGAAGCAGGAGATGCATACACAGCGGCTTTGATGCGTTTGTCTGCTCTTTTTGAAGAGAGAGGTGAATTCTATGCCAACGCCAATGCTAGAGTCTCATTAGAAAGCGCTAGAGCAAATTGGCAACTTTTTAAAGGCAGAAGATGA
Protein sequence

>Msa0026730

MDATSFQMFHLPVLTRPEKCVRITGCSLSRTGRLKKLHTIRHKKVSMEVACSYNNMPASTLESGGHKFPLEEELILKNRSQQILPYLNERCIYVVGMMGSGKTTVGKIMSQALSYSFCDCDTLIEEKVDGNSVADIFKLYGESFFRDKEGVSVWLDVPVEALAKRIAAVGTNSRPLLHDEAGDAYTAALMRLSALFEERGEFYANANARVSLESARANWQLFKGRR*