Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145070 | sp|Q9SJ05|SK1_ARATH | 53.509 | 228 | 80 | 5 | 22 | 228 | 40 | 262 | 5.22e-74 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145070 | A0A396GU32 | 76.573 | 286 | 26 | 3 | 1 | 245 | 1 | 286 | 8.10e-152 | 433 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014570 | Msa0145070 | 0.821274 | 4.404571e-53 | -8.615850e-47 |
| Msa0026730 | Msa0145070 | 0.817880 | 2.621283e-52 | -8.615850e-47 |
| Msa0027390 | Msa0145070 | 0.839774 | 1.295470e-57 | -8.615850e-47 |
| Msa0030280 | Msa0145070 | 0.803872 | 2.832713e-49 | -8.615850e-47 |
| Msa0032320 | Msa0145070 | 0.834308 | 3.230390e-56 | -8.615850e-47 |
| Msa0032370 | Msa0145070 | 0.804321 | 2.285198e-49 | -8.615850e-47 |
| Msa0039250 | Msa0145070 | 0.802392 | 5.732555e-49 | -8.615850e-47 |
| Msa0056450 | Msa0145070 | 0.812500 | 4.110105e-51 | -8.615850e-47 |
| Msa0077880 | Msa0145070 | 0.809675 | 1.683193e-50 | -8.615850e-47 |
| Msa0101880 | Msa0145070 | 0.885260 | 9.480554e-72 | -8.615850e-47 |
| Msa0114540 | Msa0145070 | -0.808654 | 2.784403e-50 | -8.615850e-47 |
| Msa0125770 | Msa0145070 | 0.808914 | 2.450789e-50 | -8.615850e-47 |
| Msa0133820 | Msa0145070 | 0.804382 | 2.218515e-49 | -8.615850e-47 |
| Msa0142470 | Msa0145070 | 0.803108 | 4.080007e-49 | -8.615850e-47 |
| Msa0145070 | Msa0145980 | -0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0145070 | Msa0160010 | 0.812119 | 4.975665e-51 | -8.615850e-47 |
| Msa0145070 | Msa0165300 | 0.841476 | 4.643687e-58 | -8.615850e-47 |
| Msa0145070 | Msa0181230 | 0.801893 | 7.264129e-49 | -8.615850e-47 |
| Msa0145070 | Msa0198520 | 0.808792 | 2.602730e-50 | -8.615850e-47 |
| Msa0145070 | Msa0208810 | 0.808356 | 3.224363e-50 | -8.615850e-47 |
| Msa0145070 | Msa0212750 | -0.808537 | 2.949486e-50 | -8.615850e-47 |
| Msa0145070 | Msa0238230 | 0.802338 | 5.882676e-49 | -8.615850e-47 |
| Msa0145070 | Msa0245850 | 0.813717 | 2.222013e-51 | -8.615850e-47 |
| Msa0145070 | Msa0267870 | 0.810545 | 1.092962e-50 | -8.615850e-47 |
| Msa0145070 | Msa0277420 | 0.813542 | 2.427750e-51 | -8.615850e-47 |
| Msa0145070 | Msa0288730 | 0.813724 | 2.214585e-51 | -8.615850e-47 |
| Msa0145070 | Msa0346990 | 0.820327 | 7.274037e-53 | -8.615850e-47 |
| Msa0145070 | Msa0377530 | 0.808449 | 3.080086e-50 | -8.615850e-47 |
| Msa0145070 | Msa0388030 | -0.815622 | 8.413378e-52 | -8.615850e-47 |
| Msa0145070 | Msa0392200 | 0.821922 | 3.121054e-53 | -8.615850e-47 |
| Msa0145070 | Msa0394410 | -0.808799 | 2.592846e-50 | -8.615850e-47 |
| Msa0145070 | Msa0394690 | 0.802371 | 5.791108e-49 | -8.615850e-47 |
| Msa0145070 | Msa0431770 | 0.828006 | 1.142621e-54 | -8.615850e-47 |
| Msa0145070 | Msa0436280 | -0.800551 | 1.366694e-48 | -8.615850e-47 |
| Msa0145070 | Msa0450350 | 0.801846 | 7.426339e-49 | -8.615850e-47 |
| Msa0145070 | Msa0451360 | 0.803360 | 3.618616e-49 | -8.615850e-47 |
| Msa0145070 | Msa0459700 | 0.821717 | 3.481132e-53 | -8.615850e-47 |
| Msa0145070 | Msa0461590 | 0.807651 | 4.554298e-50 | -8.615850e-47 |
| Msa0145070 | Msa0487780 | 0.836510 | 8.973452e-57 | -8.615850e-47 |
| Msa0145070 | Msa0490750 | 0.849124 | 3.954123e-60 | -8.615850e-47 |
| Msa0145070 | Msa0506940 | 0.809433 | 1.897153e-50 | -8.615850e-47 |
| Msa0145070 | Msa0510290 | 0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0145070 | Msa0515640 | 0.802016 | 6.852390e-49 | -8.615850e-47 |
| Msa0145070 | Msa0517090 | 0.807049 | 6.112215e-50 | -8.615850e-47 |
| Msa0145070 | Msa0517490 | 0.803000 | 4.295642e-49 | -8.615850e-47 |
| Msa0145070 | Msa0519130 | 0.802312 | 5.955251e-49 | -8.615850e-47 |
| Msa0145070 | Msa0542160 | 0.801585 | 8.399826e-49 | -8.615850e-47 |
| Msa0145070 | Msa0576890 | 0.822358 | 2.472845e-53 | -8.615850e-47 |
| Msa0145070 | Msa0578090 | 0.840080 | 1.078397e-57 | -8.615850e-47 |
| Msa0145070 | Msa0584550 | 0.809609 | 1.738749e-50 | -8.615850e-47 |
| Msa0145070 | Msa0586850 | 0.826749 | 2.287233e-54 | -8.615850e-47 |
| Msa0145070 | Msa0619180 | 0.832954 | 7.036955e-56 | -8.615850e-47 |
| Msa0145070 | Msa0626220 | 0.803359 | 3.619665e-49 | -8.615850e-47 |
| Msa0145070 | Msa0645170 | 0.803980 | 2.690450e-49 | -8.615850e-47 |
| Msa0145070 | Msa0648520 | 0.834873 | 2.330442e-56 | -8.615850e-47 |
| Msa0145070 | Msa0661320 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0145070 | Msa0664760 | 0.841550 | 4.440854e-58 | -8.615850e-47 |
| Msa0145070 | Msa0689760 | 0.802515 | 5.409738e-49 | -8.615850e-47 |
| Msa0145070 | Msa0691050 | 0.839776 | 1.294492e-57 | -8.615850e-47 |
| Msa0145070 | Msa0702570 | 0.806438 | 8.226469e-50 | -8.615850e-47 |
| Msa0145070 | Msa0704800 | 0.803362 | 3.614271e-49 | -8.615850e-47 |
| Msa0145070 | Msa0716860 | 0.815908 | 7.265017e-52 | -8.615850e-47 |
| Msa0145070 | Msa0743680 | 0.833638 | 4.753601e-56 | -8.615850e-47 |
| Msa0145070 | Msa0757800 | 0.820516 | 6.581902e-53 | -8.615850e-47 |
| Msa0145070 | Msa0784380 | 0.801332 | 9.467705e-49 | -8.615850e-47 |
| Msa0145070 | Msa0784620 | 0.840878 | 6.668795e-58 | -8.615850e-47 |
| Msa0145070 | Msa0824730 | 0.803171 | 3.959634e-49 | -8.615850e-47 |
| Msa0145070 | Msa0863800 | 0.818418 | 1.980791e-52 | -8.615850e-47 |
| Msa0145070 | Msa0868160 | 0.804316 | 2.290756e-49 | -8.615850e-47 |
| Msa0145070 | Msa0896010 | 0.803121 | 4.055598e-49 | -8.615850e-47 |
| Msa0145070 | Msa0947530 | -0.821254 | 4.451955e-53 | -8.615850e-47 |
| Msa0145070 | Msa0959010 | 0.818734 | 1.679456e-52 | -8.615850e-47 |
| Msa0145070 | Msa0975940 | 0.809079 | 2.259147e-50 | -8.615850e-47 |
| Msa0145070 | Msa0980940 | 0.802853 | 4.605411e-49 | -8.615850e-47 |
| Msa0145070 | Msa0993530 | 0.813690 | 2.253093e-51 | -8.615850e-47 |
| Msa0145070 | Msa1004420 | 0.833531 | 5.056230e-56 | -8.615850e-47 |
| Msa0145070 | Msa1010070 | 0.808992 | 2.357927e-50 | -8.615850e-47 |
| Msa0145070 | Msa1010460 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0145070 | Msa1021510 | 0.820157 | 7.955215e-53 | -8.615850e-47 |
| Msa0145070 | Msa1033970 | 0.804821 | 1.797336e-49 | -8.615850e-47 |
| Msa0145070 | Msa1037650 | -0.810835 | 9.461727e-51 | -8.615850e-47 |
| Msa0145070 | Msa1040520 | 0.806079 | 9.792482e-50 | -8.615850e-47 |
| Msa0145070 | Msa1105500 | 0.816114 | 6.533141e-52 | -8.615850e-47 |
| Msa0145070 | Msa1113590 | 0.813204 | 2.880916e-51 | -8.615850e-47 |
| Msa0145070 | Msa1127770 | 0.824126 | 9.554535e-54 | -8.615850e-47 |
| Msa0145070 | Msa1127830 | 0.804183 | 2.440695e-49 | -8.615850e-47 |
| Msa0145070 | Msa1143620 | 0.808392 | 3.168202e-50 | -8.615850e-47 |
| Msa0145070 | Msa1152950 | 0.814202 | 1.736841e-51 | -8.615850e-47 |
| Msa0145070 | Msa1158660 | 0.809493 | 1.841163e-50 | -8.615850e-47 |
| Msa0145070 | Msa1164010 | 0.800258 | 1.568338e-48 | -8.615850e-47 |
| Msa0145070 | Msa1224830 | 0.804599 | 1.999425e-49 | -8.615850e-47 |
| Msa0145070 | Msa1262960 | 0.807721 | 4.400995e-50 | -8.615850e-47 |
| Msa0145070 | Msa1267840 | 0.820656 | 6.112906e-53 | -8.615850e-47 |
| Msa0145070 | Msa1269580 | -0.801098 | 1.057003e-48 | -8.615850e-47 |
| Msa0145070 | Msa1286550 | 0.800289 | 1.545367e-48 | -8.615850e-47 |
| Msa0145070 | Msa1302060 | 0.818367 | 2.034264e-52 | -8.615850e-47 |
| Msa0145070 | Msa1329670 | 0.807806 | 4.221730e-50 | -8.615850e-47 |
| Msa0145070 | Msa1337730 | 0.815158 | 1.066736e-51 | -8.615850e-47 |
| Msa0145070 | Msa1338250 | 0.804453 | 2.144684e-49 | -8.615850e-47 |
| Msa0145070 | Msa1372310 | 0.813152 | 2.957857e-51 | -8.615850e-47 |
| Msa0145070 | Msa1379590 | 0.814942 | 1.191624e-51 | -8.615850e-47 |
| Msa0145070 | Msa1396780 | 0.818492 | 1.905569e-52 | -8.615850e-47 |
| Msa0145070 | Msa1398860 | 0.820672 | 6.060187e-53 | -8.615850e-47 |
| Msa0145070 | Msa1415940 | 0.820490 | 6.674549e-53 | -8.615850e-47 |
| Msa0145070 | Msa1420250 | 0.803614 | 3.204820e-49 | -8.615850e-47 |
| Msa0145070 | Msa1422840 | 0.805977 | 1.028821e-49 | -8.615850e-47 |
| Msa0145070 | Msa1424640 | 0.815102 | 1.098102e-51 | -8.615850e-47 |
| Msa0145070 | Msa1424780 | 0.803809 | 2.919857e-49 | -8.615850e-47 |
| Msa0145070 | Msa1431060 | 0.800343 | 1.506631e-48 | -8.615850e-47 |
| Msa0145070 | Msa1433220 | 0.805370 | 1.379536e-49 | -8.615850e-47 |
| Msa0145070 | Msa1435400 | 0.829996 | 3.765267e-55 | -8.615850e-47 |
| Msa0145070 | Msa1448770 | 0.802643 | 5.089193e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145070 | MtrunA17_Chr8g0383021 | 76.573 | 286 | 26 | 3 | 1 | 245 | 1 | 286 | 1.56e-155 | 433 |
| Msa0145070 | MtrunA17_Chr6g0462401 | 24.762 | 210 | 132 | 3 | 40 | 228 | 49 | 253 | 5.49e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145070 | AT2G21940.4 | 53.509 | 228 | 81 | 5 | 22 | 228 | 40 | 263 | 8.17e-76 | 232 |
| Msa0145070 | AT2G21940.2 | 53.509 | 228 | 80 | 5 | 22 | 228 | 40 | 262 | 5.31e-75 | 230 |
| Msa0145070 | AT2G21940.5 | 53.509 | 228 | 80 | 5 | 22 | 228 | 40 | 262 | 5.31e-75 | 230 |
| Msa0145070 | AT2G21940.1 | 53.509 | 228 | 80 | 5 | 22 | 228 | 40 | 262 | 5.31e-75 | 230 |
| Msa0145070 | AT2G21940.7 | 52.703 | 222 | 79 | 5 | 22 | 222 | 40 | 256 | 3.97e-72 | 222 |
| Msa0145070 | AT2G21940.3 | 52.703 | 222 | 79 | 5 | 22 | 222 | 40 | 256 | 3.97e-72 | 222 |
| Msa0145070 | AT2G21940.6 | 52.703 | 222 | 79 | 5 | 22 | 222 | 40 | 256 | 3.97e-72 | 222 |
| Msa0145070 | AT4G39540.2 | 42.088 | 297 | 119 | 7 | 1 | 245 | 1 | 296 | 4.51e-68 | 212 |
| Msa0145070 | AT4G39540.1 | 42.088 | 297 | 119 | 7 | 1 | 245 | 1 | 296 | 4.51e-68 | 212 |
| Msa0145070 | AT4G39540.3 | 40.656 | 305 | 120 | 8 | 1 | 245 | 1 | 304 | 1.47e-64 | 203 |
| Msa0145070 | AT3G26900.3 | 27.273 | 176 | 95 | 3 | 75 | 228 | 75 | 239 | 3.26e-12 | 65.1 |
| Msa0145070 | AT3G26900.1 | 27.273 | 176 | 95 | 3 | 75 | 228 | 75 | 239 | 3.26e-12 | 65.1 |
| Msa0145070 | AT3G26900.2 | 27.273 | 176 | 95 | 3 | 75 | 228 | 75 | 239 | 3.26e-12 | 65.1 |
Find 101 sgRNAs with CRISPR-Local
Find 376 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAGGTTAAGGGTAATT+AGG | 0.223386 | 1_4:+4675559 | Msa0145070:five_prime_UTR |
| GCAAAATCAATTTCCCAAAT+TGG | 0.231558 | 1_4:-4675653 | None:intergenic |
| TCCTACAGCTGCAATTCTTT+TGG | 0.250684 | 1_4:-4680155 | None:intergenic |
| TAGCAACAGTTTGAATTTCT+AGG | 0.259612 | 1_4:+4681113 | Msa0145070:three_prime_UTR |
| AACATTCGTTTCAGTGTTTA+CGG | 0.270486 | 1_4:+4675685 | Msa0145070:five_prime_UTR |
| CACGCACTTGTGTGGGAAAT+TGG | 0.290761 | 1_4:+4675536 | Msa0145070:five_prime_UTR |
| TGCCAGCAGAAGCTCCAATT+TGG | 0.292168 | 1_4:+4675639 | Msa0145070:five_prime_UTR |
| CTGAAAATTATATTATAGAT+TGG | 0.315868 | 1_4:+4675602 | Msa0145070:five_prime_UTR |
| GAAATTCAAACTGTTGCTAT+TGG | 0.319091 | 1_4:-4681109 | None:intergenic |
| AGTACGATTTGGCGCAATTA+AGG | 0.325683 | 1_4:+4680983 | Msa0145070:three_prime_UTR |
| CACTCTAACCAGATGTATAA+TGG | 0.326445 | 1_4:-4675471 | None:intergenic |
| TCTGGTTAGAGTGTTGGATT+TGG | 0.339431 | 1_4:+4675481 | Msa0145070:five_prime_UTR |
| TCGGCACAAGAAGGTTTCTA+TGG | 0.345778 | 1_4:+4675848 | Msa0145070:CDS |
| CTATTTATCCATTATACATC+TGG | 0.354380 | 1_4:+4675463 | Msa0145070:five_prime_UTR |
| GCTGATATATTCAAACTCTA+TGG | 0.355113 | 1_4:+4678199 | Msa0145070:CDS |
| AGAAAGAATAGTGAACGATT+TGG | 0.381231 | 1_4:-4675392 | None:intergenic |
| AGAATCTTTCTTTCGTGATA+AGG | 0.381877 | 1_4:+4678222 | Msa0145070:CDS |
| CACTAAGTGGGGTCGTCAAC+CGG | 0.387217 | 1_4:-4681168 | None:intergenic |
| CGGGTTGGTGGGAGTATTAG+TGG | 0.390699 | 1_4:+4675243 | None:intergenic |
| TAAACACTGAAACGAATGTT+TGG | 0.390796 | 1_4:-4675682 | None:intergenic |
| CTGGTTAGAGTGTTGGATTT+GGG | 0.392669 | 1_4:+4675482 | Msa0145070:five_prime_UTR |
| TTGATTGAGGAAAAGGTTGA+TGG | 0.393326 | 1_4:+4678166 | Msa0145070:CDS |
| TGTTATTATGAAAATATTAG+TGG | 0.396970 | 1_4:-4675273 | None:intergenic |
| TGATACATTGATTGAGGAAA+AGG | 0.400790 | 1_4:+4678159 | Msa0145070:CDS |
| GTAGCTTCAACATTGGAATC+TGG | 0.413868 | 1_4:+4676720 | Msa0145070:intron |
| GGAAATTGGAGAAGAGGTTA+AGG | 0.417923 | 1_4:+4675550 | Msa0145070:five_prime_UTR |
| GCCAGCAGAAGCTCCAATTT+GGG | 0.418753 | 1_4:+4675640 | Msa0145070:five_prime_UTR |
| TGCAAGATAGTAGTACGATT+TGG | 0.419145 | 1_4:+4680972 | Msa0145070:exon |
| TTGCAGGCGCTAGAGCAAAT+TGG | 0.422109 | 1_4:+4680919 | Msa0145070:intron |
| TCCCAAATTGGAGCTTCTGC+TGG | 0.428619 | 1_4:-4675641 | None:intergenic |
| AAATTGACATGCAGGAATGA+TGG | 0.432438 | 1_4:+4677097 | Msa0145070:intron |
| TGATGTAGACATATATATTC+CGG | 0.446996 | 1_4:+4681149 | Msa0145070:three_prime_UTR |
| TACTCTTGTAGCTTCAACAT+TGG | 0.455200 | 1_4:+4676713 | Msa0145070:intron |
| GGCTCTGGGAAGACAACTGT+GGG | 0.455572 | 1_4:+4677119 | Msa0145070:CDS |
| TTAATTCCCAGCAAAAGTTA+TGG | 0.458040 | 1_4:-4681072 | None:intergenic |
| TATACATCTGGTTAGAGTGT+TGG | 0.458073 | 1_4:+4675475 | Msa0145070:five_prime_UTR |
| CATGCAGGAATGATGGGCTC+TGG | 0.472739 | 1_4:+4677104 | Msa0145070:intron |
| ATGTAGAAGAGGGCGAGAAT+TGG | 0.491757 | 1_4:-4680179 | None:intergenic |
| AATCAATTCTCACCGAGCTT+CGG | 0.500631 | 1_4:+4675299 | Msa0145070:five_prime_UTR |
| TGTATTCCCATTGTATGTAA+TGG | 0.502205 | 1_4:+4675710 | Msa0145070:exon |
| TGTTCTTACAACAATATGCC+AGG | 0.503807 | 1_4:+4675879 | Msa0145070:CDS |
| TAGCATCCATTACATACAAT+GGG | 0.504566 | 1_4:-4675716 | None:intergenic |
| TATTGAGAGATGAGGGAATG+AGG | 0.506655 | 1_4:-4675424 | None:intergenic |
| TGAGGAAGAGTTGATTCTAA+AGG | 0.507211 | 1_4:+4676761 | Msa0145070:CDS |
| TTCTAATGAGACTCTAGCAT+TGG | 0.514662 | 1_4:-4680420 | None:intergenic |
| CGGTTGACGACCCCACTTAG+TGG | 0.520350 | 1_4:+4681169 | Msa0145070:three_prime_UTR |
| AATTGACATGCAGGAATGAT+GGG | 0.520917 | 1_4:+4677098 | Msa0145070:intron |
| AAAAGAATATTGAGAGATGA+GGG | 0.522483 | 1_4:-4675431 | None:intergenic |
| GAGCGCTGTATATATGTTGT+TGG | 0.523615 | 1_4:+4676996 | Msa0145070:CDS |
| GGTCCGACTCAGAGAACAAC+CGG | 0.524299 | 1_4:-4675799 | None:intergenic |
| TTTATGCGCACGCACTTGTG+TGG | 0.527957 | 1_4:+4675528 | Msa0145070:five_prime_UTR |
| ATACAGCGCTCATTTAAATA+CGG | 0.538346 | 1_4:-4676984 | None:intergenic |
| AGATGTACCAGTGGAAGCAT+TGG | 0.540460 | 1_4:+4680132 | Msa0145070:CDS |
| GAAATTGGAGAAGAGGTTAA+GGG | 0.546637 | 1_4:+4675551 | Msa0145070:five_prime_UTR |
| TAATAGTGATACATTGATTG+AGG | 0.548025 | 1_4:+4678153 | Msa0145070:intron |
| TTCAGCCTCATCCCACTAAG+TGG | 0.551456 | 1_4:-4681181 | None:intergenic |
| CCTCTTCTACATGATGAAGC+AGG | 0.552664 | 1_4:+4680190 | Msa0145070:CDS |
| ACATTCGTTTCAGTGTTTAC+GGG | 0.553844 | 1_4:+4675686 | Msa0145070:five_prime_UTR |
| TAGAATCAACTCTTCCTCAA+GGG | 0.555001 | 1_4:-4676757 | None:intergenic |
| GGTTGACGACCCCACTTAGT+GGG | 0.557320 | 1_4:+4681170 | Msa0145070:three_prime_UTR |
| AAAAGTTATGGATGAAAATG+TGG | 0.560894 | 1_4:-4681060 | None:intergenic |
| CATTCGTTTCAGTGTTTACG+GGG | 0.562010 | 1_4:+4675687 | Msa0145070:five_prime_UTR |
| GTAGCATCCATTACATACAA+TGG | 0.563066 | 1_4:-4675717 | None:intergenic |
| AGAATCAACTCTTCCTCAAG+GGG | 0.563689 | 1_4:-4676756 | None:intergenic |
| ATCTTTCTTTCGTGATAAGG+AGG | 0.564203 | 1_4:+4678225 | Msa0145070:CDS |
| TTAGAATCAACTCTTCCTCA+AGG | 0.565895 | 1_4:-4676758 | None:intergenic |
| TCAGCCTCATCCCACTAAGT+GGG | 0.567825 | 1_4:-4681180 | None:intergenic |
| TGTGTGGGAAATTGGAGAAG+AGG | 0.570936 | 1_4:+4675544 | Msa0145070:five_prime_UTR |
| TAGCCGAAATCCTACCTGGT+TGG | 0.571484 | 1_4:-4678802 | None:intergenic |
| AGAATAGTGAACGATTTGGA+AGG | 0.572488 | 1_4:-4675388 | None:intergenic |
| TAATGGATAAATAGTAGAGT+GGG | 0.574564 | 1_4:-4675454 | None:intergenic |
| TTATGCGCACGCACTTGTGT+GGG | 0.584022 | 1_4:+4675529 | Msa0145070:five_prime_UTR |
| ATGCAGGAATGATGGGCTCT+GGG | 0.586330 | 1_4:+4677105 | Msa0145070:intron |
| TCACACCATTCGGCACAAGA+AGG | 0.588318 | 1_4:+4675839 | Msa0145070:CDS |
| CGACCCCACTTAGTGGGATG+AGG | 0.589160 | 1_4:+4681176 | Msa0145070:three_prime_UTR |
| TAACCGGTTGTTCTCTGAGT+CGG | 0.590699 | 1_4:+4675796 | Msa0145070:CDS |
| CCTGCTTCATCATGTAGAAG+AGG | 0.591927 | 1_4:-4680190 | None:intergenic |
| CTGCTTCATCATGTAGAAGA+GGG | 0.599098 | 1_4:-4680189 | None:intergenic |
| CCAGGAAATATATGCACAAG+GGG | 0.600293 | 1_4:+4680095 | Msa0145070:intron |
| AGAAACCTTCTTGTGCCGAA+TGG | 0.602096 | 1_4:-4675844 | None:intergenic |
| ATAATGGATAAATAGTAGAG+TGG | 0.603047 | 1_4:-4675455 | None:intergenic |
| AGGGCATAAGTTTCCCCTTG+AGG | 0.610167 | 1_4:+4676743 | Msa0145070:CDS |
| TGAGACTCTAGCATTGGCGT+TGG | 0.610419 | 1_4:-4680414 | None:intergenic |
| GGTTGTTCTCTGAGTCGGAC+CGG | 0.612933 | 1_4:+4675801 | Msa0145070:CDS |
| GAAAAGAATATTGAGAGATG+AGG | 0.613915 | 1_4:-4675432 | None:intergenic |
| GCTTCAACATTGGAATCTGG+AGG | 0.615047 | 1_4:+4676723 | Msa0145070:intron |
| GGGCTCTGGGAAGACAACTG+TGG | 0.617107 | 1_4:+4677118 | Msa0145070:CDS |
| AACAACACTGCACAACAGCA+TGG | 0.617841 | 1_4:-4681006 | None:intergenic |
| AGAAGAATATTTCTCCAACC+AGG | 0.620145 | 1_4:+4678788 | Msa0145070:intron |
| TGCCAGGAAATATATGCACA+AGG | 0.620476 | 1_4:+4680093 | Msa0145070:intron |
| TTGGTGGGAGTATTAGTGGT+GGG | 0.625599 | 1_4:+4675247 | None:intergenic |
| GAGCGATTTATACCGAAGCT+CGG | 0.626447 | 1_4:-4675311 | None:intergenic |
| GCCAGGAAATATATGCACAA+GGG | 0.635533 | 1_4:+4680094 | Msa0145070:intron |
| GCCAAAAGAATTGCAGCTGT+AGG | 0.647442 | 1_4:+4680154 | Msa0145070:CDS |
| GTTGGTGGGAGTATTAGTGG+TGG | 0.648395 | 1_4:+4675246 | None:intergenic |
| TGTTTGGTTAGATGTACCAG+TGG | 0.652145 | 1_4:+4680123 | Msa0145070:CDS |
| CAGCCTCATCCCACTAAGTG+GGG | 0.657129 | 1_4:-4681179 | None:intergenic |
| CTTCAACATTGGAATCTGGA+GGG | 0.659832 | 1_4:+4676724 | Msa0145070:CDS |
| CAGGAAATATATGCACAAGG+GGG | 0.768658 | 1_4:+4680096 | Msa0145070:intron |
| AGCAGGAGATGCATACACAG+CGG | 0.786140 | 1_4:+4680207 | Msa0145070:CDS |
| GCTCTGGGAAGACAACTGTG+GGG | 0.798287 | 1_4:+4677120 | Msa0145070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr1_4:4677334-4677353 | Msa0145070:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr1_4:4677334-4677353 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr1_4:4677333-4677352 | None:intergenic | 0.0% |
| !! | TAAAATTTATTGTAAATAGA+AGG | - | chr1_4:4677642-4677661 | None:intergenic | 10.0% |
| !!! | TACATTTAATATTTTATATG+AGG | + | chr1_4:4677898-4677917 | Msa0145070:intron | 10.0% |
| !!! | ATATAAATATTTGTATGTTT+TGG | + | chr1_4:4679804-4679823 | Msa0145070:intron | 10.0% |
| !! | TGTTATTATGAAAATATTAG+TGG | - | chr1_4:4675276-4675295 | None:intergenic | 15.0% |
| !! | ACAAAAAAAAAAAAAAAACG+AGG | + | chr1_4:4675356-4675375 | Msa0145070:five_prime_UTR | 15.0% |
| !! | CAAAAAAAAAAAAAAAACGA+GGG | + | chr1_4:4675357-4675376 | Msa0145070:five_prime_UTR | 15.0% |
| !! | CTGAAAATTATATTATAGAT+TGG | + | chr1_4:4675602-4675621 | Msa0145070:five_prime_UTR | 15.0% |
| !!! | AAATGATATTGTTTCTTTAT+TGG | - | chr1_4:4677296-4677315 | None:intergenic | 15.0% |
| !!! | ACTTTTAAGAAAACAATATT+TGG | - | chr1_4:4677516-4677535 | None:intergenic | 15.0% |
| !!! | TAAATTTTAATAGAGACTAA+AGG | + | chr1_4:4677653-4677672 | Msa0145070:intron | 15.0% |
| !!! | AAATTTTAATAGAGACTAAA+GGG | + | chr1_4:4677654-4677673 | Msa0145070:intron | 15.0% |
| !! | TATTATGCAATAGATAAAAA+CGG | + | chr1_4:4677967-4677986 | Msa0145070:intron | 15.0% |
| !!! | TGAGTTTTTTTTTTTTTTGA+GGG | + | chr1_4:4678944-4678963 | Msa0145070:intron | 15.0% |
| !!! | TAATTTGTATACCAATTAAT+AGG | - | chr1_4:4679712-4679731 | None:intergenic | 15.0% |
| !! | AAACATCAAAAGATAAAAAA+TGG | - | chr1_4:4679749-4679768 | None:intergenic | 15.0% |
| !! | TGTGAATTTAATCATAAATA+AGG | - | chr1_4:4679840-4679859 | None:intergenic | 15.0% |
| !!! | TACTAAAACATCAAATATTT+TGG | + | chr1_4:4679940-4679959 | Msa0145070:intron | 15.0% |
| !! | AAACATCAAAAGAAAAAAAA+TGG | + | chr1_4:4679981-4680000 | Msa0145070:intron | 15.0% |
| !!! | ATATTAATCATCCATAATTT+TGG | + | chr1_4:4680278-4680297 | Msa0145070:intron | 15.0% |
| !!! | AAATATTTTTTATGCAAGTT+TGG | - | chr1_4:4680307-4680326 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTGTTACAGCT+TGG | - | chr1_4:4675349-4675368 | None:intergenic | 20.0% |
| !!! | TTGAAACTCTAGTTTTTTTT+TGG | + | chr1_4:4675942-4675961 | Msa0145070:intron | 20.0% |
| !!! | TTTGTTTTAGAAAGTAACAA+TGG | - | chr1_4:4676373-4676392 | None:intergenic | 20.0% |
| !! | TTATTTAATATGCTCATACA+AGG | + | chr1_4:4676624-4676643 | Msa0145070:intron | 20.0% |
| !! | AATATCAGAAACAAAATGTA+AGG | - | chr1_4:4676694-4676713 | None:intergenic | 20.0% |
| !!! | TCAATTTTGTAACTAACTTA+AGG | - | chr1_4:4677619-4677638 | None:intergenic | 20.0% |
| !!! | TGTTTTAGTAAAATACTAGT+GGG | + | chr1_4:4677677-4677696 | Msa0145070:intron | 20.0% |
| !! | TTCATATTCAAGTGATATTA+AGG | + | chr1_4:4677932-4677951 | Msa0145070:intron | 20.0% |
| !! | TCATATTCAAGTGATATTAA+GGG | + | chr1_4:4677933-4677952 | Msa0145070:intron | 20.0% |
| !! | ATTATGCAATAGATAAAAAC+GGG | + | chr1_4:4677968-4677987 | Msa0145070:intron | 20.0% |
| !! | AAAACAATTACTTTGATTCA+TGG | + | chr1_4:4678083-4678102 | Msa0145070:intron | 20.0% |
| !! | TTGATTCATGGTTATATTAT+AGG | + | chr1_4:4678095-4678114 | Msa0145070:intron | 20.0% |
| !! | TGAGATGTAATTAAAGAAAT+AGG | - | chr1_4:4678331-4678350 | None:intergenic | 20.0% |
| !! | CGATTATATCAAATTATTAC+CGG | - | chr1_4:4678425-4678444 | None:intergenic | 20.0% |
| !!! | GTGAGTTTTTTTTTTTTTTG+AGG | + | chr1_4:4678943-4678962 | Msa0145070:intron | 20.0% |
| !!! | GAGTTTTTTTTTTTTTTGAG+GGG | + | chr1_4:4678945-4678964 | Msa0145070:intron | 20.0% |
| !!! | AAAGGTTTTCATAAACAATT+AGG | + | chr1_4:4679267-4679286 | Msa0145070:intron | 20.0% |
| !! | TAATAGTCAAACAGAATAAT+AGG | - | chr1_4:4679533-4679552 | None:intergenic | 20.0% |
| !! | ATCAAAAGATAAAAAATGGA+GGG | - | chr1_4:4679745-4679764 | None:intergenic | 20.0% |
| !!! | TAACTCCTTTAATAGTTTTA+TGG | + | chr1_4:4679879-4679898 | Msa0145070:intron | 20.0% |
| !! | ACAAACCATAAAACTATTAA+AGG | - | chr1_4:4679887-4679906 | None:intergenic | 20.0% |
| !! | ATCAAAAGAAAAAAAATGGA+GGG | + | chr1_4:4679985-4680004 | Msa0145070:intron | 20.0% |
| ! | AAAAGAATATTGAGAGATGA+GGG | - | chr1_4:4675434-4675453 | None:intergenic | 25.0% |
| !! | TAATGGATAAATAGTAGAGT+GGG | - | chr1_4:4675457-4675476 | None:intergenic | 25.0% |
| !!! | ATAATGGATAAATAGTAGAG+TGG | - | chr1_4:4675458-4675477 | None:intergenic | 25.0% |
| ! | CTATTTATCCATTATACATC+TGG | + | chr1_4:4675463-4675482 | Msa0145070:five_prime_UTR | 25.0% |
| !! | TTTTCAAATGTTTCATCTAC+CGG | + | chr1_4:4675743-4675762 | Msa0145070:CDS | 25.0% |
| !! | TTATTTGACTAGAGTGATTT+TGG | - | chr1_4:4676016-4676035 | None:intergenic | 25.0% |
| !! | TGTTATTTGAATACCTATGT+CGG | + | chr1_4:4676062-4676081 | Msa0145070:intron | 25.0% |
| ! | ATAACGTGATTAATATGCAA+TGG | + | chr1_4:4676091-4676110 | Msa0145070:intron | 25.0% |
| ! | TGATTATCTTGAGTAATTAC+CGG | + | chr1_4:4676128-4676147 | Msa0145070:intron | 25.0% |
| ! | TTGAATATAATCACATGTGT+CGG | - | chr1_4:4676225-4676244 | None:intergenic | 25.0% |
| ! | TGACATCAACAATAATTAGA+AGG | - | chr1_4:4676264-4676283 | None:intergenic | 25.0% |
| ! | AGTTAACTTAAAGAGCTTAT+TGG | - | chr1_4:4676335-4676354 | None:intergenic | 25.0% |
| !!! | AAGCTCTTTAAGTTAACTTT+TGG | + | chr1_4:4676337-4676356 | Msa0145070:intron | 25.0% |
| !!! | TTTTAGAAAGTAACAATGGA+TGG | - | chr1_4:4676369-4676388 | None:intergenic | 25.0% |
| ! | TGCTCGATTAATTGAAAAAA+AGG | + | chr1_4:4676557-4676576 | Msa0145070:intron | 25.0% |
| ! | AAATGTAAGGATACAAAATG+AGG | - | chr1_4:4676681-4676700 | None:intergenic | 25.0% |
| !!! | TATTGGTTCAAGTAAGAAAA+TGG | - | chr1_4:4676934-4676953 | None:intergenic | 25.0% |
| !! | GATCTATTCTGCAATTTTAT+TGG | - | chr1_4:4676951-4676970 | None:intergenic | 25.0% |
| ! | CAATACAAGTATGATTACTT+TGG | + | chr1_4:4677058-4677077 | Msa0145070:intron | 25.0% |
| !! | TTAGCTATTCATTTTGTGAT+TGG | + | chr1_4:4677162-4677181 | Msa0145070:CDS | 25.0% |
| ! | AATTTCTTGTCTTTGTTCAT+AGG | + | chr1_4:4677195-4677214 | Msa0145070:intron | 25.0% |
| ! | ATTTCTTGTCTTTGTTCATA+GGG | + | chr1_4:4677196-4677215 | Msa0145070:intron | 25.0% |
| !! | TTCTTTATTGGCTATTCAAA+TGG | - | chr1_4:4677284-4677303 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | - | chr1_4:4677501-4677520 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | - | chr1_4:4677502-4677521 | None:intergenic | 25.0% |
| !!! | GTGTTTTAGTAAAATACTAG+TGG | + | chr1_4:4677676-4677695 | Msa0145070:intron | 25.0% |
| ! | TTCTTTATAGCCTATTCAAA+TGG | - | chr1_4:4677846-4677865 | None:intergenic | 25.0% |
| ! | CATATTCAAGTGATATTAAG+GGG | + | chr1_4:4677934-4677953 | Msa0145070:intron | 25.0% |
| ! | TTATGCAATAGATAAAAACG+GGG | + | chr1_4:4677969-4677988 | Msa0145070:intron | 25.0% |
| !!! | CAAAGTAATTGTTTTGCAAT+AGG | - | chr1_4:4678078-4678097 | None:intergenic | 25.0% |
| !! | TAATAGTGATACATTGATTG+AGG | + | chr1_4:4678153-4678172 | Msa0145070:intron | 25.0% |
| ! | TATATAGAAGCAGAAAACAA+GGG | - | chr1_4:4678357-4678376 | None:intergenic | 25.0% |
| ! | ATATATAGAAGCAGAAAACA+AGG | - | chr1_4:4678358-4678377 | None:intergenic | 25.0% |
| ! | ATATATTATAAACTGCTCCA+AGG | + | chr1_4:4678372-4678391 | Msa0145070:intron | 25.0% |
| ! | AATAAAAGATCCGTAAATGT+GGG | - | chr1_4:4678763-4678782 | None:intergenic | 25.0% |
| ! | ATTGGTTGATTGTACATATA+TGG | + | chr1_4:4678881-4678900 | Msa0145070:intron | 25.0% |
| ! | TTAGTTTACATTTATAGTCG+AGG | + | chr1_4:4679118-4679137 | Msa0145070:intron | 25.0% |
| !!! | ATGTTATTTCAAACGAAGTT+GGG | - | chr1_4:4679202-4679221 | None:intergenic | 25.0% |
| !!! | AATGTTATTTCAAACGAAGT+TGG | - | chr1_4:4679203-4679222 | None:intergenic | 25.0% |
| !!! | TATGAAAACCTTTTTAAGAG+AGG | - | chr1_4:4679260-4679279 | None:intergenic | 25.0% |
| ! | ATAAACAATTAGGTACTTAC+TGG | + | chr1_4:4679277-4679296 | Msa0145070:intron | 25.0% |
| ! | TTGTTAAATAACAGCTATAG+CGG | + | chr1_4:4679329-4679348 | Msa0145070:intron | 25.0% |
| !! | TTGTAACAAGCTTTTATTGA+AGG | - | chr1_4:4679423-4679442 | None:intergenic | 25.0% |
| !!! | TTCAATAAAAGCTTGTTACA+AGG | + | chr1_4:4679422-4679441 | Msa0145070:intron | 25.0% |
| ! | TCAAAAGATAAAAAATGGAG+GGG | - | chr1_4:4679744-4679763 | None:intergenic | 25.0% |
| ! | CATCAAAAGATAAAAAATGG+AGG | - | chr1_4:4679746-4679765 | None:intergenic | 25.0% |
| !!! | TTATGGTTTGTTTTTCATCA+AGG | + | chr1_4:4679896-4679915 | Msa0145070:intron | 25.0% |
| !!! | TATGGTTTGTTTTTCATCAA+GGG | + | chr1_4:4679897-4679916 | Msa0145070:intron | 25.0% |
| ! | CATCAAAAGAAAAAAAATGG+AGG | + | chr1_4:4679984-4680003 | Msa0145070:intron | 25.0% |
| ! | TACAAATACATGTAAAGATG+AGG | - | chr1_4:4680062-4680081 | None:intergenic | 25.0% |
| ! | CATCTTTACATGTATTTGTA+TGG | + | chr1_4:4680062-4680081 | Msa0145070:intron | 25.0% |
| ! | TACATGTATTTGTATGGAAA+TGG | + | chr1_4:4680068-4680087 | Msa0145070:intron | 25.0% |
| ! | TATGTGTATTTACATTGTCA+TGG | + | chr1_4:4680522-4680541 | Msa0145070:intron | 25.0% |
| !!! | TCACTCTTTTTTATTGGATA+AGG | - | chr1_4:4680599-4680618 | None:intergenic | 25.0% |
| !!! | ACAAGATCACTCTTTTTTAT+TGG | - | chr1_4:4680605-4680624 | None:intergenic | 25.0% |
| ! | AATAAAAAAGAGTGATCTTG+TGG | + | chr1_4:4680604-4680623 | Msa0145070:intron | 25.0% |
| ! | TTGCAATTTGATTGTTATCA+TGG | - | chr1_4:4680666-4680685 | None:intergenic | 25.0% |
| ! | AAATTGAAATGGAGTTACAA+AGG | - | chr1_4:4680808-4680827 | None:intergenic | 25.0% |
| !!! | CATTTCAATTTGTTAGCTTT+GGG | + | chr1_4:4680817-4680836 | Msa0145070:intron | 25.0% |
| ! | AAGGATTATTAGATTTGCAT+CGG | - | chr1_4:4680892-4680911 | None:intergenic | 25.0% |
| ! | AAAAGTTATGGATGAAAATG+TGG | - | chr1_4:4681063-4681082 | None:intergenic | 25.0% |
| ! | TGATGTAGACATATATATTC+CGG | + | chr1_4:4681149-4681168 | Msa0145070:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTGTAAATTGAGTT+CGG | + | chr1_4:4681230-4681249 | Msa0145070:three_prime_UTR | 25.0% |
| AGAAAGAATAGTGAACGATT+TGG | - | chr1_4:4675395-4675414 | None:intergenic | 30.0% | |
| GAAAAGAATATTGAGAGATG+AGG | - | chr1_4:4675435-4675454 | None:intergenic | 30.0% | |
| GCAAAATCAATTTCCCAAAT+TGG | - | chr1_4:4675656-4675675 | None:intergenic | 30.0% | |
| TAAACACTGAAACGAATGTT+TGG | - | chr1_4:4675685-4675704 | None:intergenic | 30.0% | |
| AACATTCGTTTCAGTGTTTA+CGG | + | chr1_4:4675685-4675704 | Msa0145070:five_prime_UTR | 30.0% | |
| TGTATTCCCATTGTATGTAA+TGG | + | chr1_4:4675710-4675729 | Msa0145070:exon | 30.0% | |
| TAGCATCCATTACATACAAT+GGG | - | chr1_4:4675719-4675738 | None:intergenic | 30.0% | |
| ! | GTTATTCTCACACATTTTTC+GGG | - | chr1_4:4675780-4675799 | None:intergenic | 30.0% |
| ! | GGTTATTCTCACACATTTTT+CGG | - | chr1_4:4675781-4675800 | None:intergenic | 30.0% |
| GAAAAATGTGTGAGAATAAC+CGG | + | chr1_4:4675780-4675799 | Msa0145070:CDS | 30.0% | |
| TGTTTAATTACAGCAAAACC+TGG | - | chr1_4:4675900-4675919 | None:intergenic | 30.0% | |
| GATTATCTTGAGTAATTACC+GGG | + | chr1_4:4676129-4676148 | Msa0145070:intron | 30.0% | |
| ! | GGTAAAAGCTAGCTTAATAT+TGG | - | chr1_4:4676531-4676550 | None:intergenic | 30.0% |
| !!! | ATTAAGCTAGCTTTTACCAT+TGG | + | chr1_4:4676533-4676552 | Msa0145070:intron | 30.0% |
| GGAATTTACTGCATATTTCA+AGG | + | chr1_4:4676578-4676597 | Msa0145070:intron | 30.0% | |
| ! | GTTTTGCTTAAAAGAATGGA+AGG | - | chr1_4:4676852-4676871 | None:intergenic | 30.0% |
| !! | GATGGTTTTGCTTAAAAGAA+TGG | - | chr1_4:4676856-4676875 | None:intergenic | 30.0% |
| ATGATAGTACTATCTGTTGA+TGG | - | chr1_4:4676874-4676893 | None:intergenic | 30.0% | |
| ATACAGCGCTCATTTAAATA+CGG | - | chr1_4:4676987-4677006 | None:intergenic | 30.0% | |
| ! | ATGTTGTTGGTAAGTTTCTT+TGG | + | chr1_4:4677009-4677028 | Msa0145070:intron | 30.0% |
| ATACTTTCAAATTGACATGC+AGG | + | chr1_4:4677089-4677108 | Msa0145070:intron | 30.0% | |
| ! | AACTTGCACCTTAATGTTTT+GGG | - | chr1_4:4677454-4677473 | None:intergenic | 30.0% |
| !! | TAACTTGCACCTTAATGTTT+TGG | - | chr1_4:4677455-4677474 | None:intergenic | 30.0% |
| !!! | CATAGTTGTTTTTCATGCAT+TGG | - | chr1_4:4677595-4677614 | None:intergenic | 30.0% |
| ACCAAATGTACCATTTGAAT+AGG | + | chr1_4:4677833-4677852 | Msa0145070:intron | 30.0% | |
| TATGCAATAGATAAAAACGG+GGG | + | chr1_4:4677970-4677989 | Msa0145070:intron | 30.0% | |
| ! | TGATACATTGATTGAGGAAA+AGG | + | chr1_4:4678159-4678178 | Msa0145070:CDS | 30.0% |
| GCTGATATATTCAAACTCTA+TGG | + | chr1_4:4678199-4678218 | Msa0145070:CDS | 30.0% | |
| AGAATCTTTCTTTCGTGATA+AGG | + | chr1_4:4678222-4678241 | Msa0145070:CDS | 30.0% | |
| ! | TGTAAAGTACCATCATGAAT+TGG | - | chr1_4:4678567-4678586 | None:intergenic | 30.0% |
| TGCTACATACCAATTCATAA+TGG | + | chr1_4:4678603-4678622 | Msa0145070:intron | 30.0% | |
| TGTCAAGTACCATTATGAAT+TGG | - | chr1_4:4678615-4678634 | None:intergenic | 30.0% | |
| CAATAAAAGATCCGTAAATG+TGG | - | chr1_4:4678764-4678783 | None:intergenic | 30.0% | |
| ! | TAGTTTGTAGAGACAACAAA+TGG | + | chr1_4:4678836-4678855 | Msa0145070:intron | 30.0% |
| AGTTTGTAGAGACAACAAAT+GGG | + | chr1_4:4678837-4678856 | Msa0145070:intron | 30.0% | |
| TATGTACAATCAACCAATAG+AGG | - | chr1_4:4678879-4678898 | None:intergenic | 30.0% | |
| !! | TGTTATTTCAAACGAAGTTG+GGG | - | chr1_4:4679201-4679220 | None:intergenic | 30.0% |
| CAAACAGAATAATAGGAGTT+AGG | - | chr1_4:4679526-4679545 | None:intergenic | 30.0% | |
| AATGACAAGTTTATGCATCA+AGG | - | chr1_4:4679662-4679681 | None:intergenic | 30.0% | |
| ! | GCATAAACTTGTCATTTCTA+CGG | + | chr1_4:4679666-4679685 | Msa0145070:intron | 30.0% |
| ! | CATAAACTTGTCATTTCTAC+GGG | + | chr1_4:4679667-4679686 | Msa0145070:intron | 30.0% |
| CAAAAGATAAAAAATGGAGG+GGG | - | chr1_4:4679743-4679762 | None:intergenic | 30.0% | |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | + | chr1_4:4679756-4679775 | Msa0145070:intron | 30.0% |
| ATTAAAGGAGTTATGACCTT+TGG | - | chr1_4:4679872-4679891 | None:intergenic | 30.0% | |
| ! | AAGTTTGGTGACCAAAATTA+TGG | - | chr1_4:4680292-4680311 | None:intergenic | 30.0% |
| CCAAAGCTAACAAATTGAAA+TGG | - | chr1_4:4680819-4680838 | None:intergenic | 30.0% | |
| !! | CCATTTCAATTTGTTAGCTT+TGG | + | chr1_4:4680816-4680835 | Msa0145070:intron | 30.0% |
| ! | GCAAATTGGCAACTTTTTAA+AGG | + | chr1_4:4680933-4680952 | Msa0145070:CDS | 30.0% |
| !! | TTTTTAAAGGCAGAAGATGA+TGG | + | chr1_4:4680946-4680965 | Msa0145070:CDS | 30.0% |
| ! | TTTTCATCCATAACTTTTGC+TGG | + | chr1_4:4681065-4681084 | Msa0145070:three_prime_UTR | 30.0% |
| ! | TTTCATCCATAACTTTTGCT+GGG | + | chr1_4:4681066-4681085 | Msa0145070:three_prime_UTR | 30.0% |
| TTAATTCCCAGCAAAAGTTA+TGG | - | chr1_4:4681075-4681094 | None:intergenic | 30.0% | |
| GAAATTCAAACTGTTGCTAT+TGG | - | chr1_4:4681112-4681131 | None:intergenic | 30.0% | |
| TAGCAACAGTTTGAATTTCT+AGG | + | chr1_4:4681113-4681132 | Msa0145070:three_prime_UTR | 30.0% | |
| ! | AGAATAGTGAACGATTTGGA+AGG | - | chr1_4:4675391-4675410 | None:intergenic | 35.0% |
| CACTCTAACCAGATGTATAA+TGG | - | chr1_4:4675474-4675493 | None:intergenic | 35.0% | |
| TATACATCTGGTTAGAGTGT+TGG | + | chr1_4:4675475-4675494 | Msa0145070:five_prime_UTR | 35.0% | |
| GAAATTGGAGAAGAGGTTAA+GGG | + | chr1_4:4675551-4675570 | Msa0145070:five_prime_UTR | 35.0% | |
| AGAAGAGGTTAAGGGTAATT+AGG | + | chr1_4:4675559-4675578 | Msa0145070:five_prime_UTR | 35.0% | |
| ACATTCGTTTCAGTGTTTAC+GGG | + | chr1_4:4675686-4675705 | Msa0145070:five_prime_UTR | 35.0% | |
| GTAGCATCCATTACATACAA+TGG | - | chr1_4:4675720-4675739 | None:intergenic | 35.0% | |
| TGAAAAAGCTTCACACCATT+CGG | + | chr1_4:4675829-4675848 | Msa0145070:CDS | 35.0% | |
| TGTTCTTACAACAATATGCC+AGG | + | chr1_4:4675879-4675898 | Msa0145070:CDS | 35.0% | |
| ! | ATTTGTAGATGCTACTTGCT+AGG | + | chr1_4:4675977-4675996 | Msa0145070:intron | 35.0% |
| !!! | CTAGAGTGATTTTGGTTTCA+TGG | - | chr1_4:4676008-4676027 | None:intergenic | 35.0% |
| ! | ACGTTATGTTTTTCCGACAT+AGG | - | chr1_4:4676078-4676097 | None:intergenic | 35.0% |
| ! | TTAGAAGTGTGTAGGTGTTA+CGG | - | chr1_4:4676159-4676178 | None:intergenic | 35.0% |
| AATGTTGCAAAAGCTGTTTG+TGG | - | chr1_4:4676404-4676423 | None:intergenic | 35.0% | |
| TCAATTAATCGAGCATCCAA+TGG | - | chr1_4:4676552-4676571 | None:intergenic | 35.0% | |
| GCATATTTCAAGGAAAAGTG+TGG | + | chr1_4:4676588-4676607 | Msa0145070:intron | 35.0% | |
| TACTCTTGTAGCTTCAACAT+TGG | + | chr1_4:4676713-4676732 | Msa0145070:intron | 35.0% | |
| TAGAATCAACTCTTCCTCAA+GGG | - | chr1_4:4676760-4676779 | None:intergenic | 35.0% | |
| TTAGAATCAACTCTTCCTCA+AGG | - | chr1_4:4676761-4676780 | None:intergenic | 35.0% | |
| ! | TGAGGAAGAGTTGATTCTAA+AGG | + | chr1_4:4676761-4676780 | Msa0145070:CDS | 35.0% |
| ATCATACTTGTATTGCATGC+CGG | - | chr1_4:4677053-4677072 | None:intergenic | 35.0% | |
| AAATTGACATGCAGGAATGA+TGG | + | chr1_4:4677097-4677116 | Msa0145070:intron | 35.0% | |
| AATTGACATGCAGGAATGAT+GGG | + | chr1_4:4677098-4677117 | Msa0145070:intron | 35.0% | |
| ! | GCTACACAATTTACGTGTTT+TGG | - | chr1_4:4677234-4677253 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAATGTTTTG+GGG | - | chr1_4:4677453-4677472 | None:intergenic | 35.0% |
| AAAGTGGGTGTAAATTAGTG+AGG | - | chr1_4:4677486-4677505 | None:intergenic | 35.0% | |
| !! | TAACTTGCACCTTAGTGTTT+TGG | + | chr1_4:4677710-4677729 | Msa0145070:intron | 35.0% |
| ! | AACTTGCACCTTAGTGTTTT+GGG | + | chr1_4:4677711-4677730 | Msa0145070:intron | 35.0% |
| GCCTATTCAAATGGTACATT+TGG | - | chr1_4:4677837-4677856 | None:intergenic | 35.0% | |
| TTGATTGAGGAAAAGGTTGA+TGG | + | chr1_4:4678166-4678185 | Msa0145070:CDS | 35.0% | |
| ATCTTTCTTTCGTGATAAGG+AGG | + | chr1_4:4678225-4678244 | Msa0145070:CDS | 35.0% | |
| AACATGTGTGAATGTCATGT+CGG | + | chr1_4:4678461-4678480 | Msa0145070:intron | 35.0% | |
| GCTGAAATACCAATTCATGA+TGG | + | chr1_4:4678555-4678574 | Msa0145070:intron | 35.0% | |
| TCATAATGGTACTTGACACT+TGG | + | chr1_4:4678617-4678636 | Msa0145070:intron | 35.0% | |
| AGAAGAATATTTCTCCAACC+AGG | + | chr1_4:4678788-4678807 | Msa0145070:intron | 35.0% | |
| GGTTGATTGTACATATATGG+CGG | + | chr1_4:4678884-4678903 | Msa0145070:intron | 35.0% | |
| !!! | TTTTTTTTTGAGGGGCTACT+AGG | + | chr1_4:4678953-4678972 | Msa0145070:intron | 35.0% |
| CTCTCATATTGTTAAAGCAG+AGG | - | chr1_4:4678989-4679008 | None:intergenic | 35.0% | |
| TTTCCTATGATCAAATCAGC+TGG | + | chr1_4:4679086-4679105 | Msa0145070:intron | 35.0% | |
| TTCCTATGATCAAATCAGCT+GGG | + | chr1_4:4679087-4679106 | Msa0145070:intron | 35.0% | |
| TTACATTTATAGTCGAGGTC+TGG | + | chr1_4:4679123-4679142 | Msa0145070:intron | 35.0% | |
| ! | CATTTGCTTTCTTGTTATGC+TGG | + | chr1_4:4679149-4679168 | Msa0145070:intron | 35.0% |
| ! | GTTATTTCAAACGAAGTTGG+GGG | - | chr1_4:4679200-4679219 | None:intergenic | 35.0% |
| !!! | AGAGAGGAGGATTTGTTTTA+GGG | - | chr1_4:4679244-4679263 | None:intergenic | 35.0% |
| !! | AAGAGAGGAGGATTTGTTTT+AGG | - | chr1_4:4679245-4679264 | None:intergenic | 35.0% |
| CAAATCCTCCTCTCTTAAAA+AGG | + | chr1_4:4679249-4679268 | Msa0145070:intron | 35.0% | |
| !! | GAAAACCTTTTTAAGAGAGG+AGG | - | chr1_4:4679257-4679276 | None:intergenic | 35.0% |
| ! | CTTACTGGTTGTAGTTCATA+AGG | + | chr1_4:4679292-4679311 | Msa0145070:intron | 35.0% |
| !! | AAAAGCTTGTTACAAGGTTC+TGG | + | chr1_4:4679428-4679447 | Msa0145070:intron | 35.0% |
| TTACAAAACCATAGGCTAGA+CGG | - | chr1_4:4679581-4679600 | None:intergenic | 35.0% | |
| !!! | TAGCCTATGGTTTTGTAACA+CGG | + | chr1_4:4679583-4679602 | Msa0145070:intron | 35.0% |
| ATTCACATGTGATAAGCCAA+AGG | + | chr1_4:4679853-4679872 | Msa0145070:intron | 35.0% | |
| !! | GTTTGTTTTTCATCAAGGGT+AGG | + | chr1_4:4679901-4679920 | Msa0145070:intron | 35.0% |
| TTCTAATGAGACTCTAGCAT+TGG | - | chr1_4:4680423-4680442 | None:intergenic | 35.0% | |
| ATCTTCCTGTTCTTTCTTAC+AGG | - | chr1_4:4680503-4680522 | None:intergenic | 35.0% | |
| GCAGATATAGCAACAAAACT+AGG | + | chr1_4:4680712-4680731 | Msa0145070:intron | 35.0% | |
| ! | ACAAATCAGACGCATCTTTT+CGG | - | chr1_4:4680738-4680757 | None:intergenic | 35.0% |
| TCCAACTGTAATTGCAATTG+AGG | + | chr1_4:4680759-4680778 | Msa0145070:intron | 35.0% | |
| ACCTCAATTGCAATTACAGT+TGG | - | chr1_4:4680763-4680782 | None:intergenic | 35.0% | |
| TGGGCAAACTAAAATGTTCA+CGG | + | chr1_4:4680836-4680855 | Msa0145070:intron | 35.0% | |
| ATAATCCTTCTGTATCTTGC+AGG | + | chr1_4:4680903-4680922 | Msa0145070:intron | 35.0% | |
| TGCAAGATAGTAGTACGATT+TGG | + | chr1_4:4680972-4680991 | Msa0145070:exon | 35.0% | |
| AATCAATTCTCACCGAGCTT+CGG | + | chr1_4:4675299-4675318 | Msa0145070:five_prime_UTR | 40.0% | |
| TATTGAGAGATGAGGGAATG+AGG | - | chr1_4:4675427-4675446 | None:intergenic | 40.0% | |
| !! | TCTGGTTAGAGTGTTGGATT+TGG | + | chr1_4:4675481-4675500 | Msa0145070:five_prime_UTR | 40.0% |
| !! | CTGGTTAGAGTGTTGGATTT+GGG | + | chr1_4:4675482-4675501 | Msa0145070:five_prime_UTR | 40.0% |
| GGAAATTGGAGAAGAGGTTA+AGG | + | chr1_4:4675550-4675569 | Msa0145070:five_prime_UTR | 40.0% | |
| CATTCGTTTCAGTGTTTACG+GGG | + | chr1_4:4675687-4675706 | Msa0145070:five_prime_UTR | 40.0% | |
| !!! | TTCTCACACATTTTTCGGGT+CGG | - | chr1_4:4675776-4675795 | None:intergenic | 40.0% |
| !!! | GTGAAGCTTTTTCAGTCTAC+CGG | - | chr1_4:4675823-4675842 | None:intergenic | 40.0% |
| ! | TAGAAGTGTGTAGGTGTTAC+GGG | - | chr1_4:4676158-4676177 | None:intergenic | 40.0% |
| ! | GCATTGGATTAGAAGTGTGT+AGG | - | chr1_4:4676167-4676186 | None:intergenic | 40.0% |
| CTTCTAATCCAATGCGTGTT+CGG | + | chr1_4:4676172-4676191 | Msa0145070:intron | 40.0% | |
| TTCTAATCCAATGCGTGTTC+GGG | + | chr1_4:4676173-4676192 | Msa0145070:intron | 40.0% | |
| ATCCAATCACAAGTAGCTCA+TGG | + | chr1_4:4676425-4676444 | Msa0145070:intron | 40.0% | |
| TTCCATGAGCTACTTGTGAT+TGG | - | chr1_4:4676430-4676449 | None:intergenic | 40.0% | |
| AAAATATACTCTCGCCAAGC+TGG | - | chr1_4:4676479-4676498 | None:intergenic | 40.0% | |
| GTAGCTTCAACATTGGAATC+TGG | + | chr1_4:4676720-4676739 | Msa0145070:intron | 40.0% | |
| CTTCAACATTGGAATCTGGA+GGG | + | chr1_4:4676724-4676743 | Msa0145070:CDS | 40.0% | |
| AGAATCAACTCTTCCTCAAG+GGG | - | chr1_4:4676759-4676778 | None:intergenic | 40.0% | |
| ! | GAGCGCTGTATATATGTTGT+TGG | + | chr1_4:4676996-4677015 | Msa0145070:CDS | 40.0% |
| TCATACTTGTATTGCATGCC+GGG | - | chr1_4:4677052-4677071 | None:intergenic | 40.0% | |
| ! | ACTTGCACCTTAGTGTTTTG+GGG | + | chr1_4:4677712-4677731 | Msa0145070:intron | 40.0% |
| CAATAGATAAAAACGGGGGA+GGG | + | chr1_4:4677974-4677993 | Msa0145070:intron | 40.0% | |
| AATAGATAAAAACGGGGGAG+GGG | + | chr1_4:4677975-4677994 | Msa0145070:intron | 40.0% | |
| TATAAACTGCTCCAAGGAGA+CGG | + | chr1_4:4678378-4678397 | Msa0145070:intron | 40.0% | |
| AAAGATCCGTAAATGTGGGA+CGG | - | chr1_4:4678759-4678778 | None:intergenic | 40.0% | |
| GAATATTTCTCCAACCAGGT+AGG | + | chr1_4:4678792-4678811 | Msa0145070:intron | 40.0% | |
| TGATTGTACATATATGGCGG+CGG | + | chr1_4:4678887-4678906 | Msa0145070:intron | 40.0% | |
| CAAACCTGTATAGTTGGACA+GGG | - | chr1_4:4679051-4679070 | None:intergenic | 40.0% | |
| TGTTGCCAAACCTGTATAGT+TGG | - | chr1_4:4679057-4679076 | None:intergenic | 40.0% | |
| !! | TACCCAGCTGATTTGATCAT+AGG | - | chr1_4:4679092-4679111 | None:intergenic | 40.0% |
| !!! | GTTATGCTGGCTTCTAGTTT+TGG | + | chr1_4:4679162-4679181 | Msa0145070:intron | 40.0% |
| !!! | GAGGATTTGTTTTAGGGAGT+AGG | - | chr1_4:4679238-4679257 | None:intergenic | 40.0% |
| TTGTTTACCATTTCAGACCG+AGG | + | chr1_4:4679621-4679640 | Msa0145070:intron | 40.0% | |
| ! | AAACTTGTCATTTCTACGGG+TGG | + | chr1_4:4679670-4679689 | Msa0145070:intron | 40.0% |
| TGGAGGGAGTAATAGTATTG+AGG | + | chr1_4:4680001-4680020 | Msa0145070:intron | 40.0% | |
| !! | TTGTATGGAAATGGATTGCC+AGG | + | chr1_4:4680077-4680096 | Msa0145070:intron | 40.0% |
| TGCCAGGAAATATATGCACA+AGG | + | chr1_4:4680093-4680112 | Msa0145070:intron | 40.0% | |
| GCCAGGAAATATATGCACAA+GGG | + | chr1_4:4680094-4680113 | Msa0145070:intron | 40.0% | |
| CCAGGAAATATATGCACAAG+GGG | + | chr1_4:4680095-4680114 | Msa0145070:intron | 40.0% | |
| CAGGAAATATATGCACAAGG+GGG | + | chr1_4:4680096-4680115 | Msa0145070:intron | 40.0% | |
| TGTTTGGTTAGATGTACCAG+TGG | + | chr1_4:4680123-4680142 | Msa0145070:CDS | 40.0% | |
| ! | TCCTACAGCTGCAATTCTTT+TGG | - | chr1_4:4680158-4680177 | None:intergenic | 40.0% |
| CTGCTTCATCATGTAGAAGA+GGG | - | chr1_4:4680192-4680211 | None:intergenic | 40.0% | |
| ACCAGTTGTAATTCACATGC+AGG | + | chr1_4:4680343-4680362 | Msa0145070:intron | 40.0% | |
| !! | TCTGCTCTTTTTGAAGAGAG+AGG | + | chr1_4:4680380-4680399 | Msa0145070:CDS | 40.0% |
| CTGTTCTTTCTTACAGGATC+TGG | - | chr1_4:4680497-4680516 | None:intergenic | 40.0% | |
| CAGATCCTGTAAGAAAGAAC+AGG | + | chr1_4:4680495-4680514 | Msa0145070:intron | 40.0% | |
| ! | AATGGAGTTACAAAGGCATG+AGG | - | chr1_4:4680801-4680820 | None:intergenic | 40.0% |
| ! | AGTACGATTTGGCGCAATTA+AGG | + | chr1_4:4680983-4681002 | Msa0145070:three_prime_UTR | 40.0% |
| GAGCGATTTATACCGAAGCT+CGG | - | chr1_4:4675314-4675333 | None:intergenic | 45.0% | |
| TGTGTGGGAAATTGGAGAAG+AGG | + | chr1_4:4675544-4675563 | Msa0145070:five_prime_UTR | 45.0% | |
| !!! | TCTCACACATTTTTCGGGTC+GGG | - | chr1_4:4675775-4675794 | None:intergenic | 45.0% |
| TAACCGGTTGTTCTCTGAGT+CGG | + | chr1_4:4675796-4675815 | Msa0145070:CDS | 45.0% | |
| AGAAACCTTCTTGTGCCGAA+TGG | - | chr1_4:4675847-4675866 | None:intergenic | 45.0% | |
| TCGGCACAAGAAGGTTTCTA+TGG | + | chr1_4:4675848-4675867 | Msa0145070:CDS | 45.0% | |
| TCAGTGTCGTGTATGTGTCT+GGG | + | chr1_4:4676289-4676308 | Msa0145070:intron | 45.0% | |
| TGATATTAGCCACACCAGCT+TGG | + | chr1_4:4676462-4676481 | Msa0145070:intron | 45.0% | |
| GCTTCAACATTGGAATCTGG+AGG | + | chr1_4:4676723-4676742 | Msa0145070:intron | 45.0% | |
| GTTGATGTCTCGTGATTACC+CGG | + | chr1_4:4677031-4677050 | Msa0145070:intron | 45.0% | |
| ACACCCACCCCAAAACATTA+AGG | + | chr1_4:4677443-4677462 | Msa0145070:intron | 45.0% | |
| !!! | GCACCTTAATGTTTTGGGGT+GGG | - | chr1_4:4677449-4677468 | None:intergenic | 45.0% |
| !!! | TGCACCTTAATGTTTTGGGG+TGG | - | chr1_4:4677450-4677469 | None:intergenic | 45.0% |
| GCAATAGATAAAAACGGGGG+AGG | + | chr1_4:4677973-4677992 | Msa0145070:intron | 45.0% | |
| TTCGTGATAAGGAGGTCAGT+TGG | + | chr1_4:4678233-4678252 | Msa0145070:intron | 45.0% | |
| GATAAGGAGGTCAGTTGGAA+AGG | + | chr1_4:4678238-4678257 | Msa0145070:intron | 45.0% | |
| ATAAACTGCTCCAAGGAGAC+GGG | + | chr1_4:4678379-4678398 | Msa0145070:intron | 45.0% | |
| ! | AGTTCCTTTTACCGAGTCAG+TGG | + | chr1_4:4678728-4678747 | Msa0145070:intron | 45.0% |
| !! | CATTCCACTGACTCGGTAAA+AGG | - | chr1_4:4678735-4678754 | None:intergenic | 45.0% |
| GAATGTCCGTCCCACATTTA+CGG | + | chr1_4:4678750-4678769 | Msa0145070:intron | 45.0% | |
| TCTCCAACCAGGTAGGATTT+CGG | + | chr1_4:4678799-4678818 | Msa0145070:intron | 45.0% | |
| TTACTAGCCGAAATCCTACC+TGG | - | chr1_4:4678809-4678828 | None:intergenic | 45.0% | |
| GTAGAGACAACAAATGGGCA+TGG | + | chr1_4:4678842-4678861 | Msa0145070:intron | 45.0% | |
| ! | GGAAAGAGTGTGACCTCTAT+TGG | + | chr1_4:4678863-4678882 | Msa0145070:intron | 45.0% |
| CTAGTAGCAAGCTGGAAAGA+GGG | - | chr1_4:4678921-4678940 | None:intergenic | 45.0% | |
| TGTGACATGGGTGGACAAAA+AGG | - | chr1_4:4679012-4679031 | None:intergenic | 45.0% | |
| CCAAACCTGTATAGTTGGAC+AGG | - | chr1_4:4679052-4679071 | None:intergenic | 45.0% | |
| CCTGTCCAACTATACAGGTT+TGG | + | chr1_4:4679049-4679068 | Msa0145070:intron | 45.0% | |
| CATTTATAGTCGAGGTCTGG+AGG | + | chr1_4:4679126-4679145 | Msa0145070:intron | 45.0% | |
| ! | GTGTCTGATGATGACATGTG+CGG | + | chr1_4:4679481-4679500 | Msa0145070:intron | 45.0% |
| GAATTGTTCCGTCTAGCCTA+TGG | + | chr1_4:4679570-4679589 | Msa0145070:intron | 45.0% | |
| CGACCGTGTTACAAAACCAT+AGG | - | chr1_4:4679589-4679608 | None:intergenic | 45.0% | |
| TTCAATGCCTCGGTCTGAAA+TGG | - | chr1_4:4679631-4679650 | None:intergenic | 45.0% | |
| GGACAGCTTATTCAATGCCT+CGG | - | chr1_4:4679641-4679660 | None:intergenic | 45.0% | |
| CTGTTGTGCGGCCTATTAAT+TGG | + | chr1_4:4679698-4679717 | Msa0145070:intron | 45.0% | |
| CCCCTTGTGCATATATTTCC+TGG | - | chr1_4:4680098-4680117 | None:intergenic | 45.0% | |
| ! | AGATGTACCAGTGGAAGCAT+TGG | + | chr1_4:4680132-4680151 | Msa0145070:CDS | 45.0% |
| GCCAAAAGAATTGCAGCTGT+AGG | + | chr1_4:4680154-4680173 | Msa0145070:CDS | 45.0% | |
| ATGTAGAAGAGGGCGAGAAT+TGG | - | chr1_4:4680182-4680201 | None:intergenic | 45.0% | |
| CCTGCTTCATCATGTAGAAG+AGG | - | chr1_4:4680193-4680212 | None:intergenic | 45.0% | |
| CCTCTTCTACATGATGAAGC+AGG | + | chr1_4:4680190-4680209 | Msa0145070:CDS | 45.0% | |
| GCCTGCATGTGAATTACAAC+TGG | - | chr1_4:4680347-4680366 | None:intergenic | 45.0% | |
| AACAACACTGCACAACAGCA+TGG | - | chr1_4:4681009-4681028 | None:intergenic | 45.0% | |
| TTTATGCGCACGCACTTGTG+TGG | + | chr1_4:4675528-4675547 | Msa0145070:five_prime_UTR | 50.0% | |
| TTATGCGCACGCACTTGTGT+GGG | + | chr1_4:4675529-4675548 | Msa0145070:five_prime_UTR | 50.0% | |
| CACGCACTTGTGTGGGAAAT+TGG | + | chr1_4:4675536-4675555 | Msa0145070:five_prime_UTR | 50.0% | |
| TGCCAGCAGAAGCTCCAATT+TGG | + | chr1_4:4675639-4675658 | Msa0145070:five_prime_UTR | 50.0% | |
| GCCAGCAGAAGCTCCAATTT+GGG | + | chr1_4:4675640-4675659 | Msa0145070:five_prime_UTR | 50.0% | |
| TCCCAAATTGGAGCTTCTGC+TGG | - | chr1_4:4675644-4675663 | None:intergenic | 50.0% | |
| TCACACCATTCGGCACAAGA+AGG | + | chr1_4:4675839-4675858 | Msa0145070:CDS | 50.0% | |
| GTCAGTGTCGTGTATGTGTC+TGG | + | chr1_4:4676288-4676307 | Msa0145070:intron | 50.0% | |
| AGGGCATAAGTTTCCCCTTG+AGG | + | chr1_4:4676743-4676762 | Msa0145070:CDS | 50.0% | |
| !! | ATGCAGGAATGATGGGCTCT+GGG | + | chr1_4:4677105-4677124 | Msa0145070:intron | 50.0% |
| !!! | TGCACCTTAGTGTTTTGGGG+TGG | + | chr1_4:4677715-4677734 | Msa0145070:intron | 50.0% |
| !!! | GCACCTTAGTGTTTTGGGGT+GGG | + | chr1_4:4677716-4677735 | Msa0145070:intron | 50.0% |
| TGTCGCAAACTGTCACGTGT+CGG | + | chr1_4:4678484-4678503 | Msa0145070:intron | 50.0% | |
| ! | GCACTGACACTTCACATCGA+AGG | - | chr1_4:4678522-4678541 | None:intergenic | 50.0% |
| TTGACACTTGGCAGTGTCAC+AGG | + | chr1_4:4678629-4678648 | Msa0145070:intron | 50.0% | |
| TAGCCGAAATCCTACCTGGT+TGG | - | chr1_4:4678805-4678824 | None:intergenic | 50.0% | |
| CCTAGTAGCAAGCTGGAAAG+AGG | - | chr1_4:4678922-4678941 | None:intergenic | 50.0% | |
| !! | CCTCTTTCCAGCTTGCTACT+AGG | + | chr1_4:4678919-4678938 | Msa0145070:intron | 50.0% |
| ACTCACTCCTAGTAGCAAGC+TGG | - | chr1_4:4678929-4678948 | None:intergenic | 50.0% | |
| TTGTCCACCCATGTCACAGA+TGG | + | chr1_4:4679014-4679033 | Msa0145070:intron | 50.0% | |
| CCACTGTCCATCTGTGACAT+GGG | - | chr1_4:4679024-4679043 | None:intergenic | 50.0% | |
| TCCACTGTCCATCTGTGACA+TGG | - | chr1_4:4679025-4679044 | None:intergenic | 50.0% | |
| ACCACCCTGTCCAACTATAC+AGG | + | chr1_4:4679044-4679063 | Msa0145070:intron | 50.0% | |
| ACCTGTATAGTTGGACAGGG+TGG | - | chr1_4:4679048-4679067 | None:intergenic | 50.0% | |
| GCTGTATCGCTACAGTGTAG+CGG | + | chr1_4:4679353-4679372 | Msa0145070:intron | 50.0% | |
| ! | CTTGTCATTTCTACGGGTGG+AGG | + | chr1_4:4679673-4679692 | Msa0145070:intron | 50.0% |
| ! | TGCACAAGGGGGTTAGTGTT+TGG | + | chr1_4:4680107-4680126 | Msa0145070:CDS | 50.0% |
| ! | CTTTTGGCCAATGCTTCCAC+TGG | - | chr1_4:4680142-4680161 | None:intergenic | 50.0% |
| AGCAGGAGATGCATACACAG+CGG | + | chr1_4:4680207-4680226 | Msa0145070:CDS | 50.0% | |
| !! | TGAGACTCTAGCATTGGCGT+TGG | - | chr1_4:4680417-4680436 | None:intergenic | 50.0% |
| TAGCGCCTGCAAGATACAGA+AGG | - | chr1_4:4680911-4680930 | None:intergenic | 50.0% | |
| TTGCAGGCGCTAGAGCAAAT+TGG | + | chr1_4:4680919-4680938 | Msa0145070:intron | 50.0% | |
| TCAGCCTCATCCCACTAAGT+GGG | - | chr1_4:4681183-4681202 | None:intergenic | 50.0% | |
| TTCAGCCTCATCCCACTAAG+TGG | - | chr1_4:4681184-4681203 | None:intergenic | 50.0% | |
| !!! | TTTTCGGGTCGGGTCAGAAC+CGG | - | chr1_4:4675765-4675784 | None:intergenic | 55.0% |
| GGTCCGACTCAGAGAACAAC+CGG | - | chr1_4:4675802-4675821 | None:intergenic | 55.0% | |
| GGTTGTTCTCTGAGTCGGAC+CGG | + | chr1_4:4675801-4675820 | Msa0145070:CDS | 55.0% | |
| ! | TGTAGGTGTTACGGGCTACC+CGG | - | chr1_4:4676150-4676169 | None:intergenic | 55.0% |
| GTCAACACCCGAACACGCAT+TGG | - | chr1_4:4676183-4676202 | None:intergenic | 55.0% | |
| !! | CGTGTTCGGGTGTTGACATG+TGG | + | chr1_4:4676186-4676205 | Msa0145070:intron | 55.0% |
| ATACTCTCGCCAAGCTGGTG+TGG | - | chr1_4:4676474-4676493 | None:intergenic | 55.0% | |
| !! | CATGCAGGAATGATGGGCTC+TGG | + | chr1_4:4677104-4677123 | Msa0145070:intron | 55.0% |
| !! | GGCTCTGGGAAGACAACTGT+GGG | + | chr1_4:4677119-4677138 | Msa0145070:CDS | 55.0% |
| !! | GCTCTGGGAAGACAACTGTG+GGG | + | chr1_4:4677120-4677139 | Msa0145070:CDS | 55.0% |
| GCACCCACCCCAAAACACTA+AGG | - | chr1_4:4677722-4677741 | None:intergenic | 55.0% | |
| GGGGAGGGGTCAGTTATCAT+GGG | + | chr1_4:4677989-4678008 | Msa0145070:intron | 55.0% | |
| ! | GGACGGACATTCCACTGACT+CGG | - | chr1_4:4678742-4678761 | None:intergenic | 55.0% |
| AGCAAGCTGGAAAGAGGGAG+TGG | - | chr1_4:4678916-4678935 | None:intergenic | 55.0% | |
| CTGTCCATCTGTGACATGGG+TGG | - | chr1_4:4679021-4679040 | None:intergenic | 55.0% | |
| CCCATGTCACAGATGGACAG+TGG | + | chr1_4:4679021-4679040 | Msa0145070:intron | 55.0% | |
| CACTAAGTGGGGTCGTCAAC+CGG | - | chr1_4:4681171-4681190 | None:intergenic | 55.0% | |
| GGTTGACGACCCCACTTAGT+GGG | + | chr1_4:4681170-4681189 | Msa0145070:three_prime_UTR | 55.0% | |
| CAGCCTCATCCCACTAAGTG+GGG | - | chr1_4:4681182-4681201 | None:intergenic | 55.0% | |
| !! | GGGCTCTGGGAAGACAACTG+TGG | + | chr1_4:4677118-4677137 | Msa0145070:CDS | 60.0% |
| GGGGGAGGGGTCAGTTATCA+TGG | + | chr1_4:4677988-4678007 | Msa0145070:intron | 60.0% | |
| TCAGTGCTCTCCCGTCTCCT+TGG | - | chr1_4:4678392-4678411 | None:intergenic | 60.0% | |
| !! | GAGCACTGACACGTCGACAC+CGG | + | chr1_4:4678403-4678422 | Msa0145070:intron | 60.0% |
| CGGTTGACGACCCCACTTAG+TGG | + | chr1_4:4681169-4681188 | Msa0145070:three_prime_UTR | 60.0% | |
| CGACCCCACTTAGTGGGATG+AGG | + | chr1_4:4681176-4681195 | Msa0145070:three_prime_UTR | 60.0% | |
| !! | CGGGTGGAGGTGCTGTTGTG+CGG | + | chr1_4:4679686-4679705 | Msa0145070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4675251 | 4681265 | 4675251 | ID=Msa0145070;Name=Msa0145070 |
| chr1_4 | mRNA | 4675251 | 4681265 | 4675251 | ID=Msa0145070-mRNA-1;Parent=Msa0145070;Name=Msa0145070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=458|0.6|0.81|0.81|0.5|0.63|11|284|245 |
| chr1_4 | exon | 4675251 | 4675330 | 4675251 | ID=Msa0145070-mRNA-1:exon:1938;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4675351 | 4675900 | 4675351 | ID=Msa0145070-mRNA-1:exon:1939;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4676724 | 4676782 | 4676724 | ID=Msa0145070-mRNA-1:exon:1940;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4676963 | 4677017 | 4676963 | ID=Msa0145070-mRNA-1:exon:1941;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4677111 | 4677183 | 4677111 | ID=Msa0145070-mRNA-1:exon:1942;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4678159 | 4678246 | 4678159 | ID=Msa0145070-mRNA-1:exon:1943;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4678790 | 4678809 | 4678790 | ID=Msa0145070-mRNA-1:exon:1944;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4680099 | 4680228 | 4680099 | ID=Msa0145070-mRNA-1:exon:1945;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4680365 | 4680443 | 4680365 | ID=Msa0145070-mRNA-1:exon:1946;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4680498 | 4680502 | 4680498 | ID=Msa0145070-mRNA-1:exon:1947;Parent=Msa0145070-mRNA-1 |
| chr1_4 | exon | 4680925 | 4681265 | 4680925 | ID=Msa0145070-mRNA-1:exon:1948;Parent=Msa0145070-mRNA-1 |
| chr1_4 | five_prime_UTR | 4675251 | 4675330 | 4675251 | ID=Msa0145070-mRNA-1:five_prime_utr;Parent=Msa0145070-mRNA-1 |
| chr1_4 | five_prime_UTR | 4675351 | 4675728 | 4675351 | ID=Msa0145070-mRNA-1:five_prime_utr;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4675729 | 4675900 | 4675729 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4676724 | 4676782 | 4676724 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4676963 | 4677017 | 4676963 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4677111 | 4677183 | 4677111 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4678159 | 4678246 | 4678159 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4678790 | 4678809 | 4678790 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4680099 | 4680228 | 4680099 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4680365 | 4680443 | 4680365 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4680498 | 4680502 | 4680498 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | CDS | 4680925 | 4680981 | 4680925 | ID=Msa0145070-mRNA-1:cds;Parent=Msa0145070-mRNA-1 |
| chr1_4 | three_prime_UTR | 4680982 | 4681265 | 4680982 | ID=Msa0145070-mRNA-1:three_prime_utr;Parent=Msa0145070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
