Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026740 | Msa0072340 | 0.889417 | 2.467350e-73 | -8.615850e-47 |
| Msa0026740 | Msa0163930 | 0.926439 | 4.684295e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026740 | MtrunA17_Chr1g0179151 | 83.499 | 503 | 39 | 7 | 1 | 459 | 2 | 504 | 0.0 | 726 |
| Msa0026740 | MtrunA17_Chr7g0265901 | 48.697 | 499 | 193 | 17 | 1 | 459 | 1 | 476 | 5.87e-114 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026740 | AT5G03670.1 | 37.196 | 535 | 235 | 23 | 1 | 457 | 1 | 512 | 1.15e-54 | 191 |
| Msa0026740 | AT2G36420.1 | 30.845 | 509 | 218 | 20 | 4 | 458 | 7 | 435 | 3.30e-30 | 122 |
| Msa0026740 | AT5G03670.2 | 35.537 | 363 | 152 | 17 | 1 | 290 | 1 | 354 | 3.80e-23 | 101 |
Find 85 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATGACAAACCTCTATT+TGG | 0.129831 | 1_1:-50710713 | None:intergenic |
| TTCTTATATCTGGTGTGTTT+TGG | 0.238547 | 1_1:-50710100 | None:intergenic |
| CTTCCTCATCTTCCCCTGAT+TGG | 0.248387 | 1_1:-50712631 | None:intergenic |
| TATGTTAATGTGGGTAAATT+TGG | 0.270268 | 1_1:+50714726 | Msa0026740:exon |
| AATTGTAACAAAATTCAATT+AGG | 0.281165 | 1_1:-50714976 | None:intergenic |
| GAAAAGGGTATGCAAGAAAA+TGG | 0.283502 | 1_1:+50714535 | Msa0026740:CDS |
| GATTTCTCTAGAGAGGAAAT+TGG | 0.297301 | 1_1:+50714608 | Msa0026740:CDS |
| AAAATGACAAACCTCTATTT+GGG | 0.299257 | 1_1:-50710712 | None:intergenic |
| TTGAGGAAGATCTTTGTATT+TGG | 0.327013 | 1_1:-50709995 | None:intergenic |
| TCTTCTTCTATTGTTGTTGA+AGG | 0.328021 | 1_1:-50710382 | None:intergenic |
| TGAAGATAAATCTTTGGATA+TGG | 0.335820 | 1_1:+50710480 | Msa0026740:CDS |
| ACTAGTTTATGATCTCATTA+AGG | 0.340770 | 1_1:+50714466 | Msa0026740:CDS |
| AAGTAAAAGTGATGCTGTTT+TGG | 0.340912 | 1_1:-50710176 | None:intergenic |
| ATGTAGTTGTTTAAAAGAAA+TGG | 0.342015 | 1_1:-50709957 | None:intergenic |
| CTCCGCCGGCGAAGAAATTC+CGG | 0.349929 | 1_1:-50710676 | None:intergenic |
| CCATAGGACAAAGAAAATAA+TGG | 0.352123 | 1_1:+50712587 | Msa0026740:intron |
| AGTGGATCTAAAACAGATAC+TGG | 0.354451 | 1_1:-50712671 | None:intergenic |
| AAAGGATTTGTTCTTGCTGT+TGG | 0.370163 | 1_1:-50710229 | None:intergenic |
| AAGGATTTGTTCTTGCTGTT+GGG | 0.384770 | 1_1:-50710228 | None:intergenic |
| AAAGAAAATAATGGAGTTGA+TGG | 0.398403 | 1_1:+50712596 | Msa0026740:CDS |
| GGCGTCAACAAATTCCAATC+AGG | 0.399740 | 1_1:+50712617 | Msa0026740:CDS |
| CAAAGGTTAATTGTTCTTGT+TGG | 0.416313 | 1_1:-50710053 | None:intergenic |
| ATATGGACATTGTAATGAAA+AGG | 0.424196 | 1_1:+50714519 | Msa0026740:CDS |
| ATTTCTCTAGAGAGGAAATT+GGG | 0.428343 | 1_1:+50714609 | Msa0026740:CDS |
| GACCAAGTTGTAGTGGTGTT+TGG | 0.438870 | 1_1:+50710446 | Msa0026740:CDS |
| GAGTAATGAAGATAAATCTT+TGG | 0.439203 | 1_1:+50710474 | Msa0026740:CDS |
| CGTACGACGGCCGGAGGAAG+AGG | 0.447907 | 1_1:-50710653 | None:intergenic |
| AGGTTAATTGTTCTTGTTGG+TGG | 0.450886 | 1_1:-50710050 | None:intergenic |
| TATGGACATTGTAATGAAAA+GGG | 0.451395 | 1_1:+50714520 | Msa0026740:CDS |
| TTCCTCCGGCCGTCGTACGC+CGG | 0.455640 | 1_1:+50710657 | Msa0026740:CDS |
| TGCCATCTTTCATGAACACT+TGG | 0.462596 | 1_1:-50714422 | None:intergenic |
| GAGGAATTAGTATGTTAATG+TGG | 0.467284 | 1_1:+50714716 | Msa0026740:exon |
| TTTGGGTTTAAGGGGAAACA+TGG | 0.467410 | 1_1:+50714879 | Msa0026740:three_prime_UTR |
| AAATTCCGGCGTACGACGGC+CGG | 0.473609 | 1_1:-50710662 | None:intergenic |
| CTCTTCTATCATCATATCAA+TGG | 0.481856 | 1_1:-50714585 | None:intergenic |
| TTAATTGTTCTTGTTGGTGG+TGG | 0.490318 | 1_1:-50710047 | None:intergenic |
| TTGGGTTTAAGGGGAAACAT+GGG | 0.490438 | 1_1:+50714880 | Msa0026740:three_prime_UTR |
| TTGTTTCTTCAATTGTAAAG+TGG | 0.491708 | 1_1:-50710021 | None:intergenic |
| AACAGCAAGAACAAATCCTT+TGG | 0.491836 | 1_1:+50710231 | Msa0026740:CDS |
| CGAAGCATCAAGTGAAGAGA+AGG | 0.496212 | 1_1:+50714364 | Msa0026740:CDS |
| AGTAATTTACAGCATTCTCA+TGG | 0.499320 | 1_1:-50714950 | None:intergenic |
| TCATAATCATCTTCTTCGAA+TGG | 0.510892 | 1_1:-50714329 | None:intergenic |
| ATCCAAGTGTTCATGAAAGA+TGG | 0.513347 | 1_1:+50714420 | Msa0026740:CDS |
| GACAAAAGAGCTAGCTGGAG+AGG | 0.516447 | 1_1:+50714652 | Msa0026740:CDS |
| GCAAGCAACTACTGTTAGAC+AGG | 0.517082 | 1_1:+50714234 | Msa0026740:CDS |
| CATGAACACTTGGATGGCAT+AGG | 0.518478 | 1_1:-50714412 | None:intergenic |
| GAGGAGACAAAAGAGCTAGC+TGG | 0.525035 | 1_1:+50714647 | Msa0026740:CDS |
| TAATGACATACTTTGTACAT+TGG | 0.528025 | 1_1:-50712774 | None:intergenic |
| AGGAATTAGTATGTTAATGT+GGG | 0.530772 | 1_1:+50714717 | Msa0026740:exon |
| TATGCAAGAAAATGGAATTG+TGG | 0.534028 | 1_1:+50714543 | Msa0026740:CDS |
| AATGGAATTGTGGAAAGAAG+TGG | 0.536453 | 1_1:+50714553 | Msa0026740:CDS |
| GACCAAACACCACTACAACT+TGG | 0.539144 | 1_1:-50710448 | None:intergenic |
| GGTAAATTTGGATGCAGTTG+AGG | 0.540119 | 1_1:+50714738 | Msa0026740:three_prime_UTR |
| GTACGCCGGAATTTCTTCGC+CGG | 0.546277 | 1_1:+50710671 | Msa0026740:CDS |
| TATCAAGAGGATCTATATCT+CGG | 0.551276 | 1_1:-50715005 | None:intergenic |
| TTCTTGTGAATCTGTTGAAG+AGG | 0.551979 | 1_1:+50710522 | Msa0026740:CDS |
| CGCCGGAATTTCTTCGCCGG+CGG | 0.552107 | 1_1:+50710674 | Msa0026740:CDS |
| CAATTGTAAAGTGGTGTTTG+AGG | 0.555762 | 1_1:-50710012 | None:intergenic |
| GCGTCAACAAATTCCAATCA+GGG | 0.566630 | 1_1:+50712618 | Msa0026740:CDS |
| AGGGGAAGATGAGGAAGAGA+AGG | 0.569911 | 1_1:+50712637 | Msa0026740:CDS |
| CTTCGCCGGCGGAGTCACCT+AGG | 0.571572 | 1_1:+50710685 | Msa0026740:CDS |
| AGGAGTGCTTCCTCTTCCTC+CGG | 0.574190 | 1_1:+50710643 | Msa0026740:intron |
| GGGGAAACATGGGAGAAACA+TGG | 0.576129 | 1_1:+50714890 | Msa0026740:three_prime_UTR |
| GGGAAACATGGGAGAAACAT+GGG | 0.580281 | 1_1:+50714891 | Msa0026740:three_prime_UTR |
| GATATGGAAACTTCAAGTAG+TGG | 0.581092 | 1_1:+50710496 | Msa0026740:CDS |
| CATTGATATGATGATAGAAG+AGG | 0.583761 | 1_1:+50714586 | Msa0026740:CDS |
| ATTCCAATCAGGGGAAGATG+AGG | 0.588369 | 1_1:+50712628 | Msa0026740:CDS |
| AGAAGAGGATTTCTCTAGAG+AGG | 0.590070 | 1_1:+50714601 | Msa0026740:CDS |
| ATCTTTCATGAACACTTGGA+TGG | 0.595411 | 1_1:-50714418 | None:intergenic |
| TCATCATAATCCTCAAAGAG+TGG | 0.603702 | 1_1:-50712689 | None:intergenic |
| CCATGAAAATGATGATGAAG+AGG | 0.609147 | 1_1:+50712724 | Msa0026740:CDS |
| TTCCGGCGTACGACGGCCGG+AGG | 0.610511 | 1_1:-50710659 | None:intergenic |
| AAATTTGGATGCAGTTGAGG+AGG | 0.612780 | 1_1:+50714741 | Msa0026740:three_prime_UTR |
| GAAGAAATTCCGGCGTACGA+CGG | 0.617395 | 1_1:-50710666 | None:intergenic |
| CACTCTTTGAATTCTCATCA+CGG | 0.620690 | 1_1:+50710129 | Msa0026740:CDS |
| GGGCGCCTAGGTGACTCCGC+CGG | 0.624652 | 1_1:-50710690 | None:intergenic |
| AGTTTATGATCTCATTAAGG+AGG | 0.626647 | 1_1:+50714469 | Msa0026740:CDS |
| AAATGACAAACCTCTATTTG+GGG | 0.634332 | 1_1:-50710711 | None:intergenic |
| TTTGAAGTGTGTTCTTGCAA+TGG | 0.636025 | 1_1:+50710421 | Msa0026740:CDS |
| CATGAAAATGATGATGAAGA+GGG | 0.661182 | 1_1:+50712725 | Msa0026740:CDS |
| CGTCAACAAATTCCAATCAG+GGG | 0.662468 | 1_1:+50712619 | Msa0026740:CDS |
| AATGACAAACCTCTATTTGG+GGG | 0.687845 | 1_1:-50710710 | None:intergenic |
| TCTCTAGAGAGGAAATTGGG+TGG | 0.688038 | 1_1:+50714612 | Msa0026740:CDS |
| AATGGAAGACCAAGTTGTAG+TGG | 0.692111 | 1_1:+50710439 | Msa0026740:CDS |
| CGTGATGAGAATTCAAAGAG+TGG | 0.707288 | 1_1:-50710128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATAATTATCTTTTT+TGG | - | chr1_1:50711829-50711848 | None:intergenic | 10.0% |
| !!! | CATTTTTGAAAATAAATTTA+TGG | + | chr1_1:50712038-50712057 | Msa0026740:intron | 10.0% |
| !! | GGTTATTTATTTATAAATTT+GGG | - | chr1_1:50712454-50712473 | None:intergenic | 10.0% |
| !! | ATTAGAATAATATCATAATT+GGG | - | chr1_1:50712548-50712567 | None:intergenic | 10.0% |
| !! | AATTAGAATAATATCATAAT+TGG | - | chr1_1:50712549-50712568 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTAATAAATTTTC+AGG | + | chr1_1:50714209-50714228 | Msa0026740:intron | 10.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr1_1:50711162-50711181 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr1_1:50711161-50711180 | Msa0026740:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr1_1:50711286-50711305 | Msa0026740:intron | 15.0% |
| !! | AAAAAGAATTTATACAGATA+TGG | - | chr1_1:50711863-50711882 | None:intergenic | 15.0% |
| !! | AAAAAGAATTTATACAGATA+TGG | - | chr1_1:50711863-50711882 | None:intergenic | 15.0% |
| !! | GGGTTATTTATTTATAAATT+TGG | - | chr1_1:50712455-50712474 | None:intergenic | 15.0% |
| !! | TTAGAATAATATCATAATTG+GGG | - | chr1_1:50712547-50712566 | None:intergenic | 15.0% |
| !!! | TCGTAAAAACATATTATTTT+TGG | + | chr1_1:50713095-50713114 | Msa0026740:intron | 15.0% |
| !!! | CGTAAAAACATATTATTTTT+GGG | + | chr1_1:50713096-50713115 | Msa0026740:intron | 15.0% |
| !!! | TTTTTATTCACAAAAAATGT+AGG | + | chr1_1:50713161-50713180 | Msa0026740:intron | 15.0% |
| !!! | GTATTTAAATATTAAGTTGA+TGG | + | chr1_1:50713192-50713211 | Msa0026740:intron | 15.0% |
| !!! | AGAGACAAAAATTTTAATTT+GGG | + | chr1_1:50714862-50714881 | Msa0026740:three_prime_UTR | 15.0% |
| !!! | AAAATTTTAATTTGGGTTTA+AGG | + | chr1_1:50714869-50714888 | Msa0026740:three_prime_UTR | 15.0% |
| !!! | AAATTTTAATTTGGGTTTAA+GGG | + | chr1_1:50714870-50714889 | Msa0026740:three_prime_UTR | 15.0% |
| !! | AATTGTAACAAAATTCAATT+AGG | - | chr1_1:50714979-50714998 | None:intergenic | 15.0% |
| !! | ATGTAGTTGTTTAAAAGAAA+TGG | - | chr1_1:50709960-50709979 | None:intergenic | 20.0% |
| !!! | TTTCTGTTAAAGATATTTTG+AGG | + | chr1_1:50710325-50710344 | Msa0026740:intron | 20.0% |
| !! | TTTGTATTGAAAAGTGAAAT+GGG | - | chr1_1:50711023-50711042 | None:intergenic | 20.0% |
| !! | TAAACTACCAATAGTTAATA+AGG | - | chr1_1:50711171-50711190 | None:intergenic | 20.0% |
| !! | GTAGTTTAAAAGTAATACTT+TGG | + | chr1_1:50711183-50711202 | Msa0026740:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr1_1:50711246-50711265 | Msa0026740:intron | 20.0% |
| !! | TAGATACATTTCATAGATTT+AGG | - | chr1_1:50711788-50711807 | None:intergenic | 20.0% |
| !! | GTCAAAATAAAACAAATTTC+CGG | - | chr1_1:50712189-50712208 | None:intergenic | 20.0% |
| !!! | AGATTTTGGAAATAATTGAA+GGG | - | chr1_1:50712219-50712238 | None:intergenic | 20.0% |
| !!! | GCTTATATTTTAACAGATTT+TGG | - | chr1_1:50712233-50712252 | None:intergenic | 20.0% |
| !! | AAATATAAGCACTTATAAGA+TGG | + | chr1_1:50712243-50712262 | Msa0026740:intron | 20.0% |
| !! | TTCATTAGTAAATAGAATGT+CGG | - | chr1_1:50712357-50712376 | None:intergenic | 20.0% |
| !!! | TTCTCATTTGTATTTTTGTT+TGG | + | chr1_1:50712381-50712400 | Msa0026740:intron | 20.0% |
| !! | TATTCTAATTAAAGTTGTTG+TGG | + | chr1_1:50712559-50712578 | Msa0026740:intron | 20.0% |
| !!! | TTTGTCATTTTTTTGTTGTA+TGG | + | chr1_1:50713237-50713256 | Msa0026740:intron | 20.0% |
| !!! | TCTTATGGTATTTTTTGTAA+CGG | - | chr1_1:50713312-50713331 | None:intergenic | 20.0% |
| !! | TTACAAAAAATACCATAAGA+GGG | + | chr1_1:50713312-50713331 | Msa0026740:intron | 20.0% |
| !! | ATATTGAATGTGTTTGTATA+AGG | + | chr1_1:50713577-50713596 | Msa0026740:intron | 20.0% |
| !! | GAAAAAAAGTTGAAATTTGA+TGG | + | chr1_1:50714095-50714114 | Msa0026740:intron | 20.0% |
| !!! | ACTTAATTTTTCACAAGATA+TGG | + | chr1_1:50714502-50714521 | Msa0026740:CDS | 20.0% |
| !!! | GAGAGACAAAAATTTTAATT+TGG | + | chr1_1:50714861-50714880 | Msa0026740:three_prime_UTR | 20.0% |
| !!! | AATTTTAATTTGGGTTTAAG+GGG | + | chr1_1:50714871-50714890 | Msa0026740:three_prime_UTR | 20.0% |
| !! | TTGTTTCTTCAATTGTAAAG+TGG | - | chr1_1:50710024-50710043 | None:intergenic | 25.0% |
| !! | AAAAACAAGCATTTTTGCAA+AGG | - | chr1_1:50710073-50710092 | None:intergenic | 25.0% |
| !!! | TGTTAAAGATATTTTGAGGT+GGG | + | chr1_1:50710329-50710348 | Msa0026740:intron | 25.0% |
| ! | GAGTAATGAAGATAAATCTT+TGG | + | chr1_1:50710474-50710493 | Msa0026740:CDS | 25.0% |
| ! | TGAAGATAAATCTTTGGATA+TGG | + | chr1_1:50710480-50710499 | Msa0026740:CDS | 25.0% |
| ! | AAAATGACAAACCTCTATTT+GGG | - | chr1_1:50710715-50710734 | None:intergenic | 25.0% |
| !!! | GGACAATATTTTTTTGCAAA+TGG | - | chr1_1:50710988-50711007 | None:intergenic | 25.0% |
| !! | TGAAATGGGTCAATTTTTAT+GGG | - | chr1_1:50711009-50711028 | None:intergenic | 25.0% |
| ! | GTTTGTATTGAAAAGTGAAA+TGG | - | chr1_1:50711024-50711043 | None:intergenic | 25.0% |
| !! | GTAATGTACAGAGTATTAAT+TGG | + | chr1_1:50711208-50711227 | Msa0026740:intron | 25.0% |
| ! | ATACAGATATGGAAAGTAAA+CGG | - | chr1_1:50711852-50711871 | None:intergenic | 25.0% |
| ! | ATACAGATATGGAAAGTAAA+CGG | - | chr1_1:50711852-50711871 | None:intergenic | 25.0% |
| !!! | CAGATTTTGGAAATAATTGA+AGG | - | chr1_1:50712220-50712239 | None:intergenic | 25.0% |
| !!! | TTCAGTTCAATAGTTTTGTT+CGG | + | chr1_1:50712279-50712298 | Msa0026740:intron | 25.0% |
| !! | CAGTACTAGTTTGATAATTT+GGG | - | chr1_1:50712475-50712494 | None:intergenic | 25.0% |
| !! | TCAGTACTAGTTTGATAATT+TGG | - | chr1_1:50712476-50712495 | None:intergenic | 25.0% |
| !! | AAAGAAAATAATGGAGTTGA+TGG | + | chr1_1:50712596-50712615 | Msa0026740:CDS | 25.0% |
| ! | TAATGACATACTTTGTACAT+TGG | - | chr1_1:50712777-50712796 | None:intergenic | 25.0% |
| !! | ACGAATTTTCGTATACTTTT+GGG | + | chr1_1:50712970-50712989 | Msa0026740:intron | 25.0% |
| ! | GTTACAAAAAATACCATAAG+AGG | + | chr1_1:50713311-50713330 | Msa0026740:intron | 25.0% |
| ! | TACAAAAAATACCATAAGAG+GGG | + | chr1_1:50713313-50713332 | Msa0026740:intron | 25.0% |
| !! | ATACTAACATCTATCTTTTG+TGG | + | chr1_1:50713373-50713392 | Msa0026740:intron | 25.0% |
| !! | TACTAACATCTATCTTTTGT+GGG | + | chr1_1:50713374-50713393 | Msa0026740:intron | 25.0% |
| ! | AAACCACTGTAATCTTTAAA+TGG | - | chr1_1:50713402-50713421 | None:intergenic | 25.0% |
| ! | TAATGGTAAAAACAAAGAGT+AGG | - | chr1_1:50713470-50713489 | None:intergenic | 25.0% |
| !! | CTGACATGAAAAAATTTTGT+GGG | - | chr1_1:50713529-50713548 | None:intergenic | 25.0% |
| !! | TCTGACATGAAAAAATTTTG+TGG | - | chr1_1:50713530-50713549 | None:intergenic | 25.0% |
| ! | CTCTTGTGAATATTTAAACT+TGG | + | chr1_1:50713661-50713680 | Msa0026740:intron | 25.0% |
| !! | TTACTGCTGTTAATAGATTT+TGG | + | chr1_1:50713831-50713850 | Msa0026740:intron | 25.0% |
| ! | GATAAAGTAGTAGAAATTTG+TGG | - | chr1_1:50713990-50714009 | None:intergenic | 25.0% |
| ! | TTCACAACATTCAATTAACT+AGG | - | chr1_1:50714037-50714056 | None:intergenic | 25.0% |
| !! | TCTATTCACTTAATTTTGGA+AGG | - | chr1_1:50714160-50714179 | None:intergenic | 25.0% |
| ! | TCCAAAATTAAGTGAATAGA+AGG | + | chr1_1:50714160-50714179 | Msa0026740:intron | 25.0% |
| !! | TCCTTCTATTCACTTAATTT+TGG | - | chr1_1:50714164-50714183 | None:intergenic | 25.0% |
| ! | AAATTAAGTGAATAGAAGGA+TGG | + | chr1_1:50714164-50714183 | Msa0026740:intron | 25.0% |
| !! | ACTAGTTTATGATCTCATTA+AGG | + | chr1_1:50714466-50714485 | Msa0026740:CDS | 25.0% |
| ! | ATATGGACATTGTAATGAAA+AGG | + | chr1_1:50714519-50714538 | Msa0026740:CDS | 25.0% |
| ! | TATGGACATTGTAATGAAAA+GGG | + | chr1_1:50714520-50714539 | Msa0026740:CDS | 25.0% |
| ! | AGGAATTAGTATGTTAATGT+GGG | + | chr1_1:50714717-50714736 | Msa0026740:exon | 25.0% |
| ! | TATGTTAATGTGGGTAAATT+TGG | + | chr1_1:50714726-50714745 | Msa0026740:exon | 25.0% |
| TTGAGGAAGATCTTTGTATT+TGG | - | chr1_1:50709998-50710017 | None:intergenic | 30.0% | |
| CAAAGGTTAATTGTTCTTGT+TGG | - | chr1_1:50710056-50710075 | None:intergenic | 30.0% | |
| ! | TTCTTATATCTGGTGTGTTT+TGG | - | chr1_1:50710103-50710122 | None:intergenic | 30.0% |
| ! | AGTGGTGATTTTCTTATATC+TGG | - | chr1_1:50710113-50710132 | None:intergenic | 30.0% |
| !! | AAGTAAAAGTGATGCTGTTT+TGG | - | chr1_1:50710179-50710198 | None:intergenic | 30.0% |
| !!! | AACAAATCCTTTGGTGTTTT+TGG | + | chr1_1:50710240-50710259 | Msa0026740:CDS | 30.0% |
| !! | CTGTTAAAGATATTTTGAGG+TGG | + | chr1_1:50710328-50710347 | Msa0026740:intron | 30.0% |
| ! | TCTTCTTCTATTGTTGTTGA+AGG | - | chr1_1:50710385-50710404 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAAACAA+AGG | + | chr1_1:50710397-50710416 | Msa0026740:CDS | 30.0% | |
| TTTCAAGAGCAAAACGAAAA+GGG | - | chr1_1:50710624-50710643 | None:intergenic | 30.0% | |
| AAATGACAAACCTCTATTTG+GGG | - | chr1_1:50710714-50710733 | None:intergenic | 30.0% | |
| GAAAATGACAAACCTCTATT+TGG | - | chr1_1:50710716-50710735 | None:intergenic | 30.0% | |
| TATATAGCTAGTTAGACATG+TGG | - | chr1_1:50710860-50710879 | None:intergenic | 30.0% | |
| AGCTATATATGTCATCTATG+TGG | + | chr1_1:50710871-50710890 | Msa0026740:intron | 30.0% | |
| GCTATATATGTCATCTATGT+GGG | + | chr1_1:50710872-50710891 | Msa0026740:intron | 30.0% | |
| ! | GTGAAATGGGTCAATTTTTA+TGG | - | chr1_1:50711010-50711029 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr1_1:50711081-50711100 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr1_1:50711082-50711101 | Msa0026740:intron | 30.0% |
| ! | ATGTACAGAGTATTAATTGG+AGG | + | chr1_1:50711211-50711230 | Msa0026740:intron | 30.0% |
| ! | TGTACAGAGTATTAATTGGA+GGG | + | chr1_1:50711212-50711231 | Msa0026740:intron | 30.0% |
| AGAATGTATTGAATTGAGAG+TGG | - | chr1_1:50711355-50711374 | None:intergenic | 30.0% | |
| !! | AATGCACCAATAGTTGATAA+GGG | + | chr1_1:50711398-50711417 | Msa0026740:intron | 30.0% |
| AGTGAAAGAGAGAGAAAAAT+GGG | - | chr1_1:50711432-50711451 | None:intergenic | 30.0% | |
| AAGTGAAAGAGAGAGAAAAA+TGG | - | chr1_1:50711433-50711452 | None:intergenic | 30.0% | |
| CATAAATTAATTGAGCCCTT+TGG | - | chr1_1:50711487-50711506 | None:intergenic | 30.0% | |
| !! | AATGCACCAATAGTTGATAA+GGG | + | chr1_1:50711398-50711417 | Msa0026740:intron | 30.0% |
| AGTGAAAGAGAGAGAAAAAT+GGG | - | chr1_1:50711432-50711451 | None:intergenic | 30.0% | |
| AAGTGAAAGAGAGAGAAAAA+TGG | - | chr1_1:50711433-50711452 | None:intergenic | 30.0% | |
| AATAAGTGTGAAATGAGTCA+AGG | + | chr1_1:50711584-50711603 | Msa0026740:intron | 30.0% | |
| ATAAGTGTGAAATGAGTCAA+GGG | + | chr1_1:50711585-50711604 | Msa0026740:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | - | chr1_1:50711742-50711761 | None:intergenic | 30.0% | |
| !!! | ACTGTTGTGTTTGTTTTTGT+CGG | + | chr1_1:50712129-50712148 | Msa0026740:intron | 30.0% |
| AATATATCAGTCATAGGATC+TGG | - | chr1_1:50712164-50712183 | None:intergenic | 30.0% | |
| GAATAATATCATAATTGGGG+TGG | - | chr1_1:50712544-50712563 | None:intergenic | 30.0% | |
| ! | CCATTATTTTCTTTGTCCTA+TGG | - | chr1_1:50712590-50712609 | None:intergenic | 30.0% |
| CCATAGGACAAAGAAAATAA+TGG | + | chr1_1:50712587-50712606 | Msa0026740:intron | 30.0% | |
| ! | CATGAAAATGATGATGAAGA+GGG | + | chr1_1:50712725-50712744 | Msa0026740:CDS | 30.0% |
| !! | TGAGTCTTGTTAAGATGATA+TGG | + | chr1_1:50712938-50712957 | Msa0026740:intron | 30.0% |
| ! | GACGAATTTTCGTATACTTT+TGG | + | chr1_1:50712969-50712988 | Msa0026740:intron | 30.0% |
| GACAAATGAGTAATAAGTTG+CGG | + | chr1_1:50713040-50713059 | Msa0026740:intron | 30.0% | |
| GTTCCATTTAAAGATTACAG+TGG | + | chr1_1:50713396-50713415 | Msa0026740:intron | 30.0% | |
| TTTGCATTGAATGTGGAAAT+TGG | + | chr1_1:50713438-50713457 | Msa0026740:intron | 30.0% | |
| TAAAAACAAAGAGTAGGCTA+AGG | - | chr1_1:50713464-50713483 | None:intergenic | 30.0% | |
| CACACATTACTTATGTCTAA+TGG | - | chr1_1:50713487-50713506 | None:intergenic | 30.0% | |
| CATTAGACATAAGTAATGTG+TGG | + | chr1_1:50713485-50713504 | Msa0026740:intron | 30.0% | |
| TAAAGCTTAAGCATGTTTGA+TGG | + | chr1_1:50713611-50713630 | Msa0026740:intron | 30.0% | |
| !! | GCATGTTTGATGGTAATTTT+TGG | + | chr1_1:50713621-50713640 | Msa0026740:intron | 30.0% |
| AATGAAGCAATAACTCACAT+GGG | - | chr1_1:50713701-50713720 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTCAAGACCTTTTT+AGG | + | chr1_1:50713754-50713773 | Msa0026740:intron | 30.0% |
| ATCTATTAACAGCAGTAACT+AGG | - | chr1_1:50713829-50713848 | None:intergenic | 30.0% | |
| !!! | CTGTTAATAGATTTTGGTTG+CGG | + | chr1_1:50713837-50713856 | Msa0026740:intron | 30.0% |
| !!! | TGTTAATAGATTTTGGTTGC+GGG | + | chr1_1:50713838-50713857 | Msa0026740:intron | 30.0% |
| CTGTTGGATAAAGATCATAT+CGG | - | chr1_1:50713912-50713931 | None:intergenic | 30.0% | |
| TCATAATCATCTTCTTCGAA+TGG | - | chr1_1:50714332-50714351 | None:intergenic | 30.0% | |
| ! | CTAGTCTCTTAAGAACTTTT+TGG | - | chr1_1:50714451-50714470 | None:intergenic | 30.0% |
| AGTTTATGATCTCATTAAGG+AGG | + | chr1_1:50714469-50714488 | Msa0026740:CDS | 30.0% | |
| TATGCAAGAAAATGGAATTG+TGG | + | chr1_1:50714543-50714562 | Msa0026740:CDS | 30.0% | |
| CTCTTCTATCATCATATCAA+TGG | - | chr1_1:50714588-50714607 | None:intergenic | 30.0% | |
| CATTGATATGATGATAGAAG+AGG | + | chr1_1:50714586-50714605 | Msa0026740:CDS | 30.0% | |
| ! | ATTTCTCTAGAGAGGAAATT+GGG | + | chr1_1:50714609-50714628 | Msa0026740:CDS | 30.0% |
| !! | ACTTGTTGATGAATTTTCAG+AGG | + | chr1_1:50714697-50714716 | Msa0026740:CDS | 30.0% |
| GAGGAATTAGTATGTTAATG+TGG | + | chr1_1:50714716-50714735 | Msa0026740:exon | 30.0% | |
| AGTAATTTACAGCATTCTCA+TGG | - | chr1_1:50714953-50714972 | None:intergenic | 30.0% | |
| CAATTGTAAAGTGGTGTTTG+AGG | - | chr1_1:50710015-50710034 | None:intergenic | 35.0% | |
| ! | TTAATTGTTCTTGTTGGTGG+TGG | - | chr1_1:50710050-50710069 | None:intergenic | 35.0% |
| AGGTTAATTGTTCTTGTTGG+TGG | - | chr1_1:50710053-50710072 | None:intergenic | 35.0% | |
| CACTCTTTGAATTCTCATCA+CGG | + | chr1_1:50710129-50710148 | Msa0026740:CDS | 35.0% | |
| !! | AAGGATTTGTTCTTGCTGTT+GGG | - | chr1_1:50710231-50710250 | None:intergenic | 35.0% |
| ! | AAAGGATTTGTTCTTGCTGT+TGG | - | chr1_1:50710232-50710251 | None:intergenic | 35.0% |
| AACAGCAAGAACAAATCCTT+TGG | + | chr1_1:50710231-50710250 | Msa0026740:CDS | 35.0% | |
| AAACGAACCAAAAACACCAA+AGG | - | chr1_1:50710250-50710269 | None:intergenic | 35.0% | |
| ! | TTTGAAGTGTGTTCTTGCAA+TGG | + | chr1_1:50710421-50710440 | Msa0026740:CDS | 35.0% |
| GATATGGAAACTTCAAGTAG+TGG | + | chr1_1:50710496-50710515 | Msa0026740:CDS | 35.0% | |
| TTCTTGTGAATCTGTTGAAG+AGG | + | chr1_1:50710522-50710541 | Msa0026740:CDS | 35.0% | |
| CTTTCACAGAAAAATCCATG+AGG | - | chr1_1:50710601-50710620 | None:intergenic | 35.0% | |
| CTTTCAAGAGCAAAACGAAA+AGG | - | chr1_1:50710625-50710644 | None:intergenic | 35.0% | |
| ! | CTTTTCGTTTTGCTCTTGAA+AGG | + | chr1_1:50710623-50710642 | Msa0026740:intron | 35.0% |
| AATGACAAACCTCTATTTGG+GGG | - | chr1_1:50710713-50710732 | None:intergenic | 35.0% | |
| GCAAATGGCTCAGTTATTAT+GGG | - | chr1_1:50710973-50710992 | None:intergenic | 35.0% | |
| TGCAAATGGCTCAGTTATTA+TGG | - | chr1_1:50710974-50710993 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr1_1:50711312-50711331 | Msa0026740:intron | 35.0% |
| ! | GAATGCACCAATAGTTGATA+AGG | + | chr1_1:50711397-50711416 | Msa0026740:intron | 35.0% |
| ATAAGTGTGAAATGAGCCAA+AGG | + | chr1_1:50711468-50711487 | Msa0026740:intron | 35.0% | |
| TAAGTGTGAAATGAGCCAAA+GGG | + | chr1_1:50711469-50711488 | Msa0026740:intron | 35.0% | |
| ! | GAATGCACCAATAGTTGATA+AGG | + | chr1_1:50711397-50711416 | Msa0026740:intron | 35.0% |
| AGTCAAGGGCTCAATTAAAA+TGG | + | chr1_1:50711599-50711618 | Msa0026740:intron | 35.0% | |
| GTCAAGGGCTCAATTAAAAT+GGG | + | chr1_1:50711600-50711619 | Msa0026740:intron | 35.0% | |
| ! | AGCATTATTGTGTCTCCTTT+TGG | + | chr1_1:50711692-50711711 | Msa0026740:intron | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr1_1:50711737-50711756 | None:intergenic | 35.0% | |
| AACTCACGAGTTAAATATGG+TGG | - | chr1_1:50712093-50712112 | None:intergenic | 35.0% | |
| GCAAACTCACGAGTTAAATA+TGG | - | chr1_1:50712096-50712115 | None:intergenic | 35.0% | |
| CACAACAGTACAAACAAACA+CGG | - | chr1_1:50712118-50712137 | None:intergenic | 35.0% | |
| CCTATGACTGATATATTTGC+CGG | + | chr1_1:50712167-50712186 | Msa0026740:intron | 35.0% | |
| ! | AGTTGTTGTGGATTTTCCAT+AGG | + | chr1_1:50712571-50712590 | Msa0026740:intron | 35.0% |
| ! | AGTGGATCTAAAACAGATAC+TGG | - | chr1_1:50712674-50712693 | None:intergenic | 35.0% |
| !! | TGTTTTAGATCCACTCTTTG+AGG | + | chr1_1:50712679-50712698 | Msa0026740:CDS | 35.0% |
| TCATCATAATCCTCAAAGAG+TGG | - | chr1_1:50712692-50712711 | None:intergenic | 35.0% | |
| ! | CCTCTTCATCATCATTTTCA+TGG | - | chr1_1:50712727-50712746 | None:intergenic | 35.0% |
| ! | CCATGAAAATGATGATGAAG+AGG | + | chr1_1:50712724-50712743 | Msa0026740:CDS | 35.0% |
| !! | TGAAGAGGGTGATTTTGATA+TGG | + | chr1_1:50712739-50712758 | Msa0026740:CDS | 35.0% |
| ACAAAAAATGTAGGAGAGAG+TGG | + | chr1_1:50713170-50713189 | Msa0026740:intron | 35.0% | |
| ! | ACAGTGGTTTTTCACTTAGA+AGG | + | chr1_1:50713412-50713431 | Msa0026740:intron | 35.0% |
| !! | AAGGCATTTTGCATTGAATG+TGG | + | chr1_1:50713431-50713450 | Msa0026740:intron | 35.0% |
| GAATGAAGCAATAACTCACA+TGG | - | chr1_1:50713702-50713721 | None:intergenic | 35.0% | |
| !! | TTTTTAGGCATTGCAAGCTT+GGG | + | chr1_1:50713769-50713788 | Msa0026740:intron | 35.0% |
| GGCATAGAGAAAACAACAAT+AGG | - | chr1_1:50714016-50714035 | None:intergenic | 35.0% | |
| GAACGAATTTCTTAGACTCT+CGG | - | chr1_1:50714063-50714082 | None:intergenic | 35.0% | |
| !! | ATTCTTTTCTCGAGTTCTAG+TGG | - | chr1_1:50714293-50714312 | None:intergenic | 35.0% |
| ATCTTTCATGAACACTTGGA+TGG | - | chr1_1:50714421-50714440 | None:intergenic | 35.0% | |
| ATCCAAGTGTTCATGAAAGA+TGG | + | chr1_1:50714420-50714439 | Msa0026740:CDS | 35.0% | |
| ! | GAAAAGGGTATGCAAGAAAA+TGG | + | chr1_1:50714535-50714554 | Msa0026740:CDS | 35.0% |
| AATGGAATTGTGGAAAGAAG+TGG | + | chr1_1:50714553-50714572 | Msa0026740:CDS | 35.0% | |
| ! | GATTTCTCTAGAGAGGAAAT+TGG | + | chr1_1:50714608-50714627 | Msa0026740:CDS | 35.0% |
| CGTGATGAGAATTCAAAGAG+TGG | - | chr1_1:50710131-50710150 | None:intergenic | 40.0% | |
| !!! | AAAGTGATGCTGTTTTGGCA+GGG | - | chr1_1:50710174-50710193 | None:intergenic | 40.0% |
| !!! | AAAAGTGATGCTGTTTTGGC+AGG | - | chr1_1:50710175-50710194 | None:intergenic | 40.0% |
| TTGAGGTGGGATTCTTCTAT+AGG | + | chr1_1:50710342-50710361 | Msa0026740:intron | 40.0% | |
| AATGGAAGACCAAGTTGTAG+TGG | + | chr1_1:50710439-50710458 | Msa0026740:CDS | 40.0% | |
| !!! | TGTGCTTGTTTTGATCCTCA+TGG | + | chr1_1:50710583-50710602 | Msa0026740:intron | 40.0% |
| AATGGCTCAGTTATTATGGG+CGG | - | chr1_1:50710970-50710989 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr1_1:50711316-50711335 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr1_1:50711316-50711335 | Msa0026740:intron | 40.0% |
| TGAGTGCCCTTATCAACTAT+TGG | - | chr1_1:50711407-50711426 | None:intergenic | 40.0% | |
| TGAGTGCCCTTATCAACTAT+TGG | - | chr1_1:50711407-50711426 | None:intergenic | 40.0% | |
| AGGGCTCAATTAAAATGGGA+CGG | + | chr1_1:50711604-50711623 | Msa0026740:intron | 40.0% | |
| CTCAATTAAAATGGGACGGA+GGG | + | chr1_1:50711608-50711627 | Msa0026740:intron | 40.0% | |
| ! | ATTGTGTCTCCTTTTGGTAG+TGG | + | chr1_1:50711698-50711717 | Msa0026740:intron | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr1_1:50711736-50711755 | None:intergenic | 40.0% | |
| CCGGCAAATATATCAGTCAT+AGG | - | chr1_1:50712170-50712189 | None:intergenic | 40.0% | |
| GCGTCAACAAATTCCAATCA+GGG | + | chr1_1:50712618-50712637 | Msa0026740:CDS | 40.0% | |
| CGTCAACAAATTCCAATCAG+GGG | + | chr1_1:50712619-50712638 | Msa0026740:CDS | 40.0% | |
| ! | CTTTGAAGAAACGTGTACGA+CGG | - | chr1_1:50713281-50713300 | None:intergenic | 40.0% |
| CAAGCTTGCAATGCCTAAAA+AGG | - | chr1_1:50713770-50713789 | None:intergenic | 40.0% | |
| !! | CTTTTTAGGCATTGCAAGCT+TGG | + | chr1_1:50713768-50713787 | Msa0026740:intron | 40.0% |
| TCATTGCGGACAATAGATCT+TGG | - | chr1_1:50713935-50713954 | None:intergenic | 40.0% | |
| GATCTATTGTCCGCAATGAT+CGG | + | chr1_1:50713936-50713955 | Msa0026740:intron | 40.0% | |
| TGCCATCTTTCATGAACACT+TGG | - | chr1_1:50714425-50714444 | None:intergenic | 40.0% | |
| ! | AGAAGAGGATTTCTCTAGAG+AGG | + | chr1_1:50714601-50714620 | Msa0026740:CDS | 40.0% |
| GGTAAATTTGGATGCAGTTG+AGG | + | chr1_1:50714738-50714757 | Msa0026740:three_prime_UTR | 40.0% | |
| AAATTTGGATGCAGTTGAGG+AGG | + | chr1_1:50714741-50714760 | Msa0026740:three_prime_UTR | 40.0% | |
| ! | TTTGGGTTTAAGGGGAAACA+TGG | + | chr1_1:50714879-50714898 | Msa0026740:three_prime_UTR | 40.0% |
| TTGGGTTTAAGGGGAAACAT+GGG | + | chr1_1:50714880-50714899 | Msa0026740:three_prime_UTR | 40.0% | |
| !! | GTTTTGGCAGGGATTCTAAG+AGG | - | chr1_1:50710163-50710182 | None:intergenic | 45.0% |
| GACCAAGTTGTAGTGGTGTT+TGG | + | chr1_1:50710446-50710465 | Msa0026740:CDS | 45.0% | |
| GACCAAACACCACTACAACT+TGG | - | chr1_1:50710451-50710470 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr1_1:50711315-50711334 | Msa0026740:intron | 45.0% |
| GCTCAATTAAAATGGGACGG+AGG | + | chr1_1:50711607-50711626 | Msa0026740:intron | 45.0% | |
| GGCGTCAACAAATTCCAATC+AGG | + | chr1_1:50712617-50712636 | Msa0026740:CDS | 45.0% | |
| ATTCCAATCAGGGGAAGATG+AGG | + | chr1_1:50712628-50712647 | Msa0026740:CDS | 45.0% | |
| GAGTAATAAGTTGCGGCGTT+AGG | + | chr1_1:50713047-50713066 | Msa0026740:intron | 45.0% | |
| ! | ATACCATAAGAGGGGCTAGT+CGG | + | chr1_1:50713321-50713340 | Msa0026740:intron | 45.0% |
| GGACAATAGATCTTGGCTGT+TGG | - | chr1_1:50713928-50713947 | None:intergenic | 45.0% | |
| GAGAGATTCACCGATCATTG+CGG | - | chr1_1:50713949-50713968 | None:intergenic | 45.0% | |
| GCAAGCAACTACTGTTAGAC+AGG | + | chr1_1:50714234-50714253 | Msa0026740:CDS | 45.0% | |
| ! | CGAAGCATCAAGTGAAGAGA+AGG | + | chr1_1:50714364-50714383 | Msa0026740:CDS | 45.0% |
| CATGAACACTTGGATGGCAT+AGG | - | chr1_1:50714415-50714434 | None:intergenic | 45.0% | |
| ! | TCTCTAGAGAGGAAATTGGG+TGG | + | chr1_1:50714612-50714631 | Msa0026740:CDS | 45.0% |
| TGGGTGGAAGAAAAATGCTG+AGG | + | chr1_1:50714628-50714647 | Msa0026740:CDS | 45.0% | |
| GGGAAACATGGGAGAAACAT+GGG | + | chr1_1:50714891-50714910 | Msa0026740:three_prime_UTR | 45.0% | |
| GAAGAAATTCCGGCGTACGA+CGG | - | chr1_1:50710669-50710688 | None:intergenic | 50.0% | |
| GCTCAGTTATTATGGGCGGA+GGG | - | chr1_1:50710966-50710985 | None:intergenic | 50.0% | |
| !!! | TGTCTCCTTTTGGTAGTGGC+CGG | + | chr1_1:50711702-50711721 | Msa0026740:intron | 50.0% |
| AAACACCGGCCACTACCAAA+AGG | - | chr1_1:50711710-50711729 | None:intergenic | 50.0% | |
| !! | CAGCTGATTTTGCAGCGAGT+TGG | + | chr1_1:50712066-50712085 | Msa0026740:intron | 50.0% |
| CTTCCTCATCTTCCCCTGAT+TGG | - | chr1_1:50712634-50712653 | None:intergenic | 50.0% | |
| AGGGGAAGATGAGGAAGAGA+AGG | + | chr1_1:50712637-50712656 | Msa0026740:CDS | 50.0% | |
| ! | GTTGCGGCGTTAGGCATTTT+TGG | + | chr1_1:50713056-50713075 | Msa0026740:intron | 50.0% |
| ! | AGGCATTGCAAGCTTGGGAA+TGG | + | chr1_1:50713774-50713793 | Msa0026740:intron | 50.0% |
| GAGGAGACAAAAGAGCTAGC+TGG | + | chr1_1:50714647-50714666 | Msa0026740:CDS | 50.0% | |
| GACAAAAGAGCTAGCTGGAG+AGG | + | chr1_1:50714652-50714671 | Msa0026740:CDS | 50.0% | |
| GGGGAAACATGGGAGAAACA+TGG | + | chr1_1:50714890-50714909 | Msa0026740:three_prime_UTR | 50.0% | |
| !! | AGGAGTGCTTCCTCTTCCTC+CGG | + | chr1_1:50710643-50710662 | Msa0026740:intron | 55.0% |
| GTACGCCGGAATTTCTTCGC+CGG | + | chr1_1:50710671-50710690 | Msa0026740:CDS | 55.0% | |
| GGCTCAGTTATTATGGGCGG+AGG | - | chr1_1:50710967-50710986 | None:intergenic | 55.0% | |
| TAGTGGCCGGTGTTTGAACC+CGG | + | chr1_1:50711715-50711734 | Msa0026740:intron | 55.0% | |
| CAAGGTCCGGGTTCAAACAC+CGG | - | chr1_1:50711724-50711743 | None:intergenic | 55.0% | |
| GTGAGCTTAGCTCAGCTGGT+TGG | - | chr1_1:50711764-50711783 | None:intergenic | 55.0% | |
| AGGAGTGAGCTTAGCTCAGC+TGG | - | chr1_1:50711768-50711787 | None:intergenic | 55.0% | |
| ! | TCACCGACTAGCCCCTCTTA+TGG | - | chr1_1:50713327-50713346 | None:intergenic | 55.0% |
| AAATTCCGGCGTACGACGGC+CGG | - | chr1_1:50710665-50710684 | None:intergenic | 60.0% | |
| CTCCGCCGGCGAAGAAATTC+CGG | - | chr1_1:50710679-50710698 | None:intergenic | 60.0% | |
| ACCTAGGCGCCCCCAAATAG+AGG | + | chr1_1:50710701-50710720 | Msa0026740:CDS | 60.0% | |
| !! | ACCTCTATTTGGGGGCGCCT+AGG | - | chr1_1:50710705-50710724 | None:intergenic | 60.0% |
| CGCCGGAATTTCTTCGCCGG+CGG | + | chr1_1:50710674-50710693 | Msa0026740:CDS | 65.0% | |
| CGTACGACGGCCGGAGGAAG+AGG | - | chr1_1:50710656-50710675 | None:intergenic | 70.0% | |
| TTCCTCCGGCCGTCGTACGC+CGG | + | chr1_1:50710657-50710676 | Msa0026740:CDS | 70.0% | |
| CTTCGCCGGCGGAGTCACCT+AGG | + | chr1_1:50710685-50710704 | Msa0026740:CDS | 70.0% | |
| TTCCGGCGTACGACGGCCGG+AGG | - | chr1_1:50710662-50710681 | None:intergenic | 75.0% | |
| GGGCGCCTAGGTGACTCCGC+CGG | - | chr1_1:50710693-50710712 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50709909 | 50715022 | 50709909 | ID=Msa0026740;Name=Msa0026740 |
| chr1_1 | mRNA | 50709909 | 50715022 | 50709909 | ID=Msa0026740-mRNA-1;Parent=Msa0026740;Name=Msa0026740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.33|0.28|1|0.33|0.42|7|289|459 |
| chr1_1 | exon | 50709909 | 50710150 | 50709909 | ID=Msa0026740-mRNA-1:exon:14736;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50710159 | 50710261 | 50710159 | ID=Msa0026740-mRNA-1:exon:14737;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50710276 | 50710323 | 50710276 | ID=Msa0026740-mRNA-1:exon:14738;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50710364 | 50710576 | 50710364 | ID=Msa0026740-mRNA-1:exon:14739;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50710645 | 50710722 | 50710645 | ID=Msa0026740-mRNA-1:exon:14740;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50712593 | 50712785 | 50712593 | ID=Msa0026740-mRNA-1:exon:14741;Parent=Msa0026740-mRNA-1 |
| chr1_1 | exon | 50714231 | 50715022 | 50714231 | ID=Msa0026740-mRNA-1:exon:14742;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50709909 | 50710150 | 50709909 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50710159 | 50710261 | 50710159 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50710276 | 50710323 | 50710276 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50710364 | 50710576 | 50710364 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50710645 | 50710722 | 50710645 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50712593 | 50712785 | 50712593 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | CDS | 50714231 | 50714733 | 50714231 | ID=Msa0026740-mRNA-1:cds;Parent=Msa0026740-mRNA-1 |
| chr1_1 | three_prime_UTR | 50714734 | 50715022 | 50714734 | ID=Msa0026740-mRNA-1:three_prime_utr;Parent=Msa0026740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
