Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026960 | sp|Q93XY5|TET18_ARATH | 52.239 | 268 | 93 | 5 | 1 | 240 | 1 | 261 | 1.99e-78 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026960 | Msa0888130 | 0.809403 | 1.925554e-50 | -8.615850e-47 |
| Msa0026960 | Msa1024650 | 0.805511 | 1.288723e-49 | -8.615850e-47 |
| Msa0026960 | Msa1145390 | 0.880175 | 6.813267e-70 | -8.615850e-47 |
| Msa0026960 | Msa1152440 | 0.815906 | 7.269720e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026960 | MtrunA17_Chr1g0182821 | 96.386 | 249 | 9 | 0 | 1 | 249 | 1 | 249 | 1.41e-180 | 495 |
| Msa0026960 | MtrunA17_Chr4g0054961 | 36.735 | 245 | 139 | 5 | 13 | 243 | 10 | 252 | 1.26e-46 | 156 |
| Msa0026960 | MtrunA17_Chr5g0400291 | 36.122 | 263 | 144 | 7 | 3 | 243 | 1 | 261 | 1.36e-46 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026960 | AT2G20230.1 | 52.239 | 268 | 93 | 5 | 1 | 240 | 1 | 261 | 2.02e-79 | 240 |
| Msa0026960 | AT4G28770.1 | 45.993 | 287 | 111 | 3 | 1 | 249 | 1 | 281 | 4.07e-71 | 219 |
| Msa0026960 | AT4G28770.2 | 45.993 | 287 | 111 | 3 | 1 | 249 | 45 | 325 | 9.66e-71 | 220 |
| Msa0026960 | AT2G20740.1 | 36.170 | 188 | 104 | 1 | 10 | 197 | 9 | 180 | 7.59e-44 | 147 |
| Msa0026960 | AT2G20740.2 | 41.353 | 133 | 78 | 0 | 65 | 197 | 7 | 139 | 2.20e-37 | 130 |
| Msa0026960 | AT1G32400.2 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 1.71e-31 | 117 |
| Msa0026960 | AT1G32400.1 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 1.71e-31 | 117 |
| Msa0026960 | AT1G32400.3 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 1.71e-31 | 117 |
| Msa0026960 | AT2G20740.3 | 37.500 | 88 | 55 | 0 | 110 | 197 | 3 | 90 | 1.24e-18 | 79.7 |
Find 82 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGTTCTGCACAGATTT+TGG | 0.115319 | 1_1:+51163955 | Msa0026960:three_prime_UTR |
| TCCTTTCCAAATCAAAATTC+AGG | 0.257790 | 1_1:+51159766 | Msa0026960:five_prime_UTR |
| AATTTAACTTGGTAGAATTA+AGG | 0.269640 | 1_1:+51164013 | Msa0026960:three_prime_UTR |
| GTGTGCTGCATTGCTTTCTT+TGG | 0.269796 | 1_1:+51160696 | Msa0026960:CDS |
| ATTGCAGCTGAGATTATTAA+TGG | 0.292794 | 1_1:+51160723 | Msa0026960:CDS |
| AATTGCTGTTCTTGTAGTTC+AGG | 0.308567 | 1_1:+51161203 | Msa0026960:CDS |
| GCCAGACTGATGATTTAATA+GGG | 0.311406 | 1_1:-51162209 | None:intergenic |
| ACCTCAGGCATTATCTCTAT+TGG | 0.324382 | 1_1:+51162096 | Msa0026960:intron |
| ATGCCTTGAATTCTGTTAAT+AGG | 0.329427 | 1_1:+51164130 | Msa0026960:three_prime_UTR |
| CTTTGCTTGACCCAGCTGTT+TGG | 0.337176 | 1_1:-51162231 | None:intergenic |
| GGCCAGACTGATGATTTAAT+AGG | 0.344500 | 1_1:-51162210 | None:intergenic |
| TATTCTAGAGAAAATGAAAT+AGG | 0.347682 | 1_1:+51159706 | Msa0026960:five_prime_UTR |
| CTTCAGAGAACAACAACAAT+TGG | 0.353254 | 1_1:-51163928 | None:intergenic |
| CAATTCTTCTCTATTCCATA+TGG | 0.354928 | 1_1:+51159895 | Msa0026960:CDS |
| ACGAGGAGGAATATGATGTT+AGG | 0.355161 | 1_1:+51162170 | Msa0026960:CDS |
| TGTTCTACTTGAGGCTGCTT+TGG | 0.360243 | 1_1:+51160957 | Msa0026960:CDS |
| CCCTAGATATAAATGGATTC+TGG | 0.363174 | 1_1:-51164241 | None:intergenic |
| ATTACCTTTATAGGATCTTC+CGG | 0.382657 | 1_1:+51161107 | Msa0026960:intron |
| AGTTACGAAGCGTGAGTTAC+AGG | 0.389448 | 1_1:+51163716 | Msa0026960:exon |
| CATCTATGCTTTCATGGGTG+TGG | 0.392159 | 1_1:+51160665 | Msa0026960:CDS |
| AGTCGTCAGTGTTGTTGCTT+TGG | 0.401033 | 1_1:+51164210 | Msa0026960:three_prime_UTR |
| TTTCATGGGTGTGGGAATAT+TGG | 0.411137 | 1_1:+51160674 | Msa0026960:CDS |
| GTCGTCAGTGTTGTTGCTTT+GGG | 0.411736 | 1_1:+51164211 | Msa0026960:three_prime_UTR |
| CGAGGAGGAATATGATGTTA+GGG | 0.412606 | 1_1:+51162171 | Msa0026960:CDS |
| GAGAGGCAAAGATGGGGAAG+AGG | 0.416285 | 1_1:-51159954 | None:intergenic |
| ATAATCAAGATATATGTAGA+TGG | 0.417454 | 1_1:+51161175 | Msa0026960:CDS |
| GAAGAAAATTGAGAAATTTG+AGG | 0.418209 | 1_1:-51159854 | None:intergenic |
| GAGGAAACCTCTCTGACGTT+TGG | 0.423049 | 1_1:+51162263 | Msa0026960:CDS |
| CAACCTATTAACAGAATTCA+AGG | 0.431573 | 1_1:-51164133 | None:intergenic |
| ATCTATGCTTTCATGGGTGT+GGG | 0.433519 | 1_1:+51160666 | Msa0026960:CDS |
| CATCAGTCTGGCCAAACAGC+TGG | 0.435710 | 1_1:+51162220 | Msa0026960:CDS |
| CCATATGGATGCTCAATCAA+TGG | 0.438362 | 1_1:+51159910 | Msa0026960:CDS |
| TAGGTTCATCTATGCTTTCA+TGG | 0.442156 | 1_1:+51160659 | Msa0026960:intron |
| ATTTGACCGGTTGGATCAAC+CGG | 0.443069 | 1_1:-51161126 | None:intergenic |
| ATATCAATCTTCCCGCTCCT+TGG | 0.446220 | 1_1:+51160012 | Msa0026960:CDS |
| GAGGAAGAGAGAGGCAAAGA+TGG | 0.448523 | 1_1:-51159962 | None:intergenic |
| TCTACTTGAGGCTGCTTTGG+TGG | 0.469686 | 1_1:+51160960 | Msa0026960:CDS |
| TCATTGCAATTGATCGTCAA+TGG | 0.469786 | 1_1:+51160986 | Msa0026960:CDS |
| CCATTGATTGAGCATCCATA+TGG | 0.473436 | 1_1:-51159910 | None:intergenic |
| TCTCTGACGTTTGGAGTTCA+CGG | 0.484229 | 1_1:+51162272 | Msa0026960:CDS |
| TGATGTTAGGGGTAGAAGTC+GGG | 0.487199 | 1_1:+51162183 | Msa0026960:CDS |
| AGGAAGAGAGAGGCAAAGAT+GGG | 0.487657 | 1_1:-51159961 | None:intergenic |
| CATATGGATGCTCAATCAAT+GGG | 0.488996 | 1_1:+51159911 | Msa0026960:CDS |
| TGATATCGGAAGTGAATTGA+GGG | 0.489761 | 1_1:-51159995 | None:intergenic |
| AGGTTCATCTATGCTTTCAT+GGG | 0.492929 | 1_1:+51160660 | Msa0026960:intron |
| ATGATGTTAGGGGTAGAAGT+CGG | 0.500274 | 1_1:+51162182 | Msa0026960:CDS |
| AGGAGCGGGAAGATTGATAT+CGG | 0.501407 | 1_1:-51160009 | None:intergenic |
| TTTCTCAATTGAATATGCAC+AGG | 0.502992 | 1_1:+51164085 | Msa0026960:three_prime_UTR |
| AGGCAAAGATGGGGAAGAGG+TGG | 0.504911 | 1_1:-51159951 | None:intergenic |
| CAAGATATATGTAGATGGGT+TGG | 0.507265 | 1_1:+51161180 | Msa0026960:CDS |
| AGATGGGGAAGAGGTGGTTG+AGG | 0.508658 | 1_1:-51159945 | None:intergenic |
| GGAAGTGAATTGAGGGGAAA+AGG | 0.514250 | 1_1:-51159988 | None:intergenic |
| TTGATATCGGAAGTGAATTG+AGG | 0.516331 | 1_1:-51159996 | None:intergenic |
| CCCCTATTAAATCATCAGTC+TGG | 0.532310 | 1_1:+51162208 | Msa0026960:CDS |
| GATCTTCCGGTTGATCCAAC+CGG | 0.532933 | 1_1:+51161120 | Msa0026960:CDS |
| TCGAAGACTCGCAATTTGAC+CGG | 0.535139 | 1_1:-51161139 | None:intergenic |
| AGACTCGCAATTTGACCGGT+TGG | 0.535765 | 1_1:-51161135 | None:intergenic |
| TAATCAAGATATATGTAGAT+GGG | 0.544634 | 1_1:+51161176 | Msa0026960:CDS |
| CAGAGAACAACAACAATTGG+AGG | 0.548932 | 1_1:-51163925 | None:intergenic |
| ATCAGTCTGGCCAAACAGCT+GGG | 0.562826 | 1_1:+51162221 | Msa0026960:CDS |
| AAGGGAACGAACCAAGGAGC+GGG | 0.563976 | 1_1:-51160023 | None:intergenic |
| GAACAACAACAATTGGAGGC+TGG | 0.572929 | 1_1:-51163921 | None:intergenic |
| CAAACAGCTGGGTCAAGCAA+AGG | 0.573654 | 1_1:+51162232 | Msa0026960:CDS |
| TTGTAGTGTGAAATTTAACT+TGG | 0.576278 | 1_1:+51164002 | Msa0026960:three_prime_UTR |
| CACGGCACTTGTTCTACTTG+AGG | 0.578232 | 1_1:+51160948 | Msa0026960:CDS |
| AATTGAGGGGAAAAGGAGCG+AGG | 0.579128 | 1_1:-51159981 | None:intergenic |
| GAAAATTGAGAAATTTGAGG+AGG | 0.582971 | 1_1:-51159851 | None:intergenic |
| AAAAGGAGCGAGGAAGAGAG+AGG | 0.592435 | 1_1:-51159971 | None:intergenic |
| AAATTTGAGGAGGAATGCTA+AGG | 0.594373 | 1_1:-51159841 | None:intergenic |
| GGAAGAGAGAGGCAAAGATG+GGG | 0.614457 | 1_1:-51159960 | None:intergenic |
| GAGTTCACGGATGAGAGAGA+AGG | 0.616146 | 1_1:+51162285 | Msa0026960:CDS |
| CCAGACTGATGATTTAATAG+GGG | 0.616151 | 1_1:-51162208 | None:intergenic |
| TTGCAGTACGGATTGAACAA+TGG | 0.622871 | 1_1:+51163683 | Msa0026960:intron |
| CCAGTATACAGTACTAATCA+CGG | 0.632085 | 1_1:+51160930 | Msa0026960:intron |
| GAAGGGAACGAACCAAGGAG+CGG | 0.632688 | 1_1:-51160024 | None:intergenic |
| AATTGATCGTCAATGGCAAG+AGG | 0.638943 | 1_1:+51160993 | Msa0026960:CDS |
| TCAAGCAAAGGCGATATCAG+AGG | 0.640764 | 1_1:+51162244 | Msa0026960:CDS |
| GATATCGGAAGTGAATTGAG+GGG | 0.647926 | 1_1:-51159994 | None:intergenic |
| TGCTCTTCGAGTAGAAACTG+TGG | 0.685685 | 1_1:-51162137 | None:intergenic |
| GAGGAGGAATATGATGTTAG+GGG | 0.702865 | 1_1:+51162172 | Msa0026960:CDS |
| GTGAACTCCAAACGTCAGAG+AGG | 0.717106 | 1_1:-51162270 | None:intergenic |
| AGCTGTCAAGCAATTCAGTG+TGG | 0.745176 | 1_1:+51163753 | Msa0026960:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGGTTT+TGG | + | chr1_1:51160151-51160170 | Msa0026960:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGTTTT+GGG | + | chr1_1:51160152-51160171 | Msa0026960:intron | 10.0% |
| !! | GTTATTAATTATTATTCATT+TGG | + | chr1_1:51160588-51160607 | Msa0026960:intron | 10.0% |
| !! | ATAGACTATTATTTATATAA+AGG | + | chr1_1:51161304-51161323 | Msa0026960:intron | 10.0% |
| !! | AATAGTATTAATAATAATAC+AGG | + | chr1_1:51162939-51162958 | Msa0026960:intron | 10.0% |
| !! | TTGAAGTAAAAAAACATAAA+AGG | - | chr1_1:51160271-51160290 | None:intergenic | 15.0% |
| !!! | TTTATTTTCATATCTTAGTT+TGG | + | chr1_1:51160787-51160806 | Msa0026960:intron | 15.0% |
| !!! | ATTACAATCATACTTTTTTT+CGG | + | chr1_1:51161487-51161506 | Msa0026960:intron | 15.0% |
| !! | AAAAAAAAACAATTACAACA+AGG | - | chr1_1:51162070-51162089 | None:intergenic | 15.0% |
| !! | TATTAATACTATTCTTTACT+AGG | - | chr1_1:51162932-51162951 | None:intergenic | 15.0% |
| !! | TATTAATACTATTCTTTACT+AGG | - | chr1_1:51162932-51162951 | None:intergenic | 15.0% |
| !! | ACAATAAAAGATATAATTAG+AGG | + | chr1_1:51163084-51163103 | Msa0026960:intron | 15.0% |
| !!! | TCAAAAAAGAAAAAAGCATA+CGG | + | chr1_1:51159681-51159700 | Msa0026960:five_prime_UTR | 20.0% |
| !!! | TATTCTAGAGAAAATGAAAT+AGG | + | chr1_1:51159706-51159725 | Msa0026960:five_prime_UTR | 20.0% |
| !!! | TTTTATTCATACAATTCAGT+TGG | - | chr1_1:51160128-51160147 | None:intergenic | 20.0% |
| !!! | ATGTTGATTATTACCTTTAT+AGG | + | chr1_1:51161098-51161117 | Msa0026960:intron | 20.0% |
| !! | ATAATCAAGATATATGTAGA+TGG | + | chr1_1:51161175-51161194 | Msa0026960:CDS | 20.0% |
| !! | TAATCAAGATATATGTAGAT+GGG | + | chr1_1:51161176-51161195 | Msa0026960:CDS | 20.0% |
| !! | ATTTATATAAAGGACTGATA+AGG | + | chr1_1:51161314-51161333 | Msa0026960:intron | 20.0% |
| !! | AGATTATATGTAATAGCTAT+TGG | + | chr1_1:51161521-51161540 | Msa0026960:intron | 20.0% |
| !!! | TATTTTGTTAAGGTTGAAAT+AGG | + | chr1_1:51161865-51161884 | Msa0026960:intron | 20.0% |
| !!! | TTTTTTTTTTTTTCAACCTC+AGG | + | chr1_1:51162081-51162100 | Msa0026960:intron | 20.0% |
| !!! | AAAAAAAAAGAAGTACTCAA+AGG | - | chr1_1:51162900-51162919 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAGAAGTACTCAA+AGG | - | chr1_1:51162900-51162919 | None:intergenic | 20.0% |
| !! | AAACTACTATTTGTGTAAAT+AGG | + | chr1_1:51163590-51163609 | Msa0026960:intron | 20.0% |
| !!! | ATAATTTCATTTTTGCAGTA+CGG | + | chr1_1:51163671-51163690 | Msa0026960:intron | 20.0% |
| !!! | AATTTAACTTGGTAGAATTA+AGG | + | chr1_1:51164013-51164032 | Msa0026960:three_prime_UTR | 20.0% |
| !!! | TCACATTTTTTGATTAAACT+TGG | - | chr1_1:51164190-51164209 | None:intergenic | 20.0% |
| !!! | CTTTTTCCTGAATTTTGATT+TGG | - | chr1_1:51159775-51159794 | None:intergenic | 25.0% |
| ! | GAAGAAAATTGAGAAATTTG+AGG | - | chr1_1:51159857-51159876 | None:intergenic | 25.0% |
| !! | AATTTTCTTCAAGCATTTGT+TGG | + | chr1_1:51159867-51159886 | Msa0026960:CDS | 25.0% |
| ! | AATTGTTACCAATTTACCTA+CGG | + | chr1_1:51160335-51160354 | Msa0026960:intron | 25.0% |
| ! | GTCACAAAGAATGAATAATT+TGG | + | chr1_1:51160452-51160471 | Msa0026960:intron | 25.0% |
| !!! | GATTTGTTTTGATGTTTTGA+AGG | + | chr1_1:51160566-51160585 | Msa0026960:intron | 25.0% |
| !!! | ATTTTTCACTTGATGATGAT+AGG | + | chr1_1:51160640-51160659 | Msa0026960:intron | 25.0% |
| !!! | GTTAATTTGTGTTGAATACT+TGG | + | chr1_1:51160829-51160848 | Msa0026960:intron | 25.0% |
| !!! | ATGTTTTTAAAGAGAGTATG+GGG | - | chr1_1:51161034-51161053 | None:intergenic | 25.0% |
| !!! | CATGTTTTTAAAGAGAGTAT+GGG | - | chr1_1:51161035-51161054 | None:intergenic | 25.0% |
| ! | ATAGCTATTGGAAATAAAAG+AGG | + | chr1_1:51161533-51161552 | Msa0026960:intron | 25.0% |
| ! | TAGCTATTGGAAATAAAAGA+GGG | + | chr1_1:51161534-51161553 | Msa0026960:intron | 25.0% |
| !! | AGACAAATTAGTTTGAATTG+AGG | + | chr1_1:51161737-51161756 | Msa0026960:intron | 25.0% |
| !!! | CTTTTGATTTCAAACTTTAC+TGG | + | chr1_1:51161775-51161794 | Msa0026960:intron | 25.0% |
| !! | ATATTTGTAAGTATGGACTA+TGG | + | chr1_1:51161809-51161828 | Msa0026960:intron | 25.0% |
| !!! | CTACTCTGTTTATTTTGTTA+AGG | + | chr1_1:51161855-51161874 | Msa0026960:intron | 25.0% |
| !! | TTTTACAATATGACTACAAC+CGG | - | chr1_1:51162423-51162442 | None:intergenic | 25.0% |
| ! | AAAACAGCTTATAAGTTAGA+AGG | + | chr1_1:51162829-51162848 | Msa0026960:intron | 25.0% |
| !!! | TTAGAAGGCATTTTGTTTTT+TGG | + | chr1_1:51162844-51162863 | Msa0026960:intron | 25.0% |
| !!! | TAGAAGGCATTTTGTTTTTT+GGG | + | chr1_1:51162845-51162864 | Msa0026960:intron | 25.0% |
| !!! | AATACAGGCATTTTGTTTTT+TGG | + | chr1_1:51162954-51162973 | Msa0026960:intron | 25.0% |
| !!! | ATACAGGCATTTTGTTTTTT+GGG | + | chr1_1:51162955-51162974 | Msa0026960:intron | 25.0% |
| !!! | TCTAATTACCATTTTTACTC+TGG | + | chr1_1:51163379-51163398 | Msa0026960:intron | 25.0% |
| !!! | CTAATTACCATTTTTACTCT+GGG | + | chr1_1:51163380-51163399 | Msa0026960:intron | 25.0% |
| ! | CATTATGATTCATAACAGAA+TGG | + | chr1_1:51163528-51163547 | Msa0026960:intron | 25.0% |
| !!! | TTTTTTCACATTGGTAATGT+TGG | + | chr1_1:51163644-51163663 | Msa0026960:intron | 25.0% |
| ! | TTGTAGTGTGAAATTTAACT+TGG | + | chr1_1:51164002-51164021 | Msa0026960:three_prime_UTR | 25.0% |
| TCCTTTCCAAATCAAAATTC+AGG | + | chr1_1:51159766-51159785 | Msa0026960:five_prime_UTR | 30.0% | |
| !!! | TCCTGAATTTTGATTTGGAA+AGG | - | chr1_1:51159770-51159789 | None:intergenic | 30.0% |
| GAAAATTGAGAAATTTGAGG+AGG | - | chr1_1:51159854-51159873 | None:intergenic | 30.0% | |
| CAATTCTTCTCTATTCCATA+TGG | + | chr1_1:51159895-51159914 | Msa0026960:CDS | 30.0% | |
| ATTTGTGAGTGGAAAATGAA+GGG | - | chr1_1:51160044-51160063 | None:intergenic | 30.0% | |
| AATTTGTGAGTGGAAAATGA+AGG | - | chr1_1:51160045-51160064 | None:intergenic | 30.0% | |
| AATTTCATGCAATTTGTGAG+TGG | - | chr1_1:51160055-51160074 | None:intergenic | 30.0% | |
| ! | GCTTGGAGTAAATTTTCAAA+CGG | + | chr1_1:51160238-51160257 | Msa0026960:intron | 30.0% |
| ! | TCAATTATCCTTTTGTGAGT+TGG | + | chr1_1:51160287-51160306 | Msa0026960:intron | 30.0% |
| ! | CAATTATCCTTTTGTGAGTT+GGG | + | chr1_1:51160288-51160307 | Msa0026960:intron | 30.0% |
| ATTGTTACCAATTTACCTAC+GGG | + | chr1_1:51160336-51160355 | Msa0026960:intron | 30.0% | |
| ! | TTTGGTTTACCAGTGTAATT+AGG | + | chr1_1:51160470-51160489 | Msa0026960:intron | 30.0% |
| CAATCTAATCCTAATTACAC+TGG | - | chr1_1:51160482-51160501 | None:intergenic | 30.0% | |
| ATTGCAGCTGAGATTATTAA+TGG | + | chr1_1:51160723-51160742 | Msa0026960:CDS | 30.0% | |
| ! | GTTTTGTATCCTACTTAAAG+CGG | + | chr1_1:51160757-51160776 | Msa0026960:intron | 30.0% |
| ! | AATAAAACTCCGCTTTAAGT+AGG | - | chr1_1:51160769-51160788 | None:intergenic | 30.0% |
| AGTTTGGATAATCTCTTGTT+CGG | + | chr1_1:51160803-51160822 | Msa0026960:intron | 30.0% | |
| ! | GTATACTGGCATTTTCAAAA+AGG | - | chr1_1:51160919-51160938 | None:intergenic | 30.0% |
| !! | CCATGTTTTTAAAGAGAGTA+TGG | - | chr1_1:51161036-51161055 | None:intergenic | 30.0% |
| ! | CCATACTCTCTTTAAAAACA+TGG | + | chr1_1:51161033-51161052 | Msa0026960:intron | 30.0% |
| ATACTACAGTCGTTAGAAAA+GGG | - | chr1_1:51161080-51161099 | None:intergenic | 30.0% | |
| ATTACCTTTATAGGATCTTC+CGG | + | chr1_1:51161107-51161126 | Msa0026960:intron | 30.0% | |
| TATATAAAGGACTGATAAGG+TGG | + | chr1_1:51161317-51161336 | Msa0026960:intron | 30.0% | |
| !!! | ATCATACTTTTTTTCGGTTG+TGG | + | chr1_1:51161493-51161512 | Msa0026960:intron | 30.0% |
| AATAAAAGAGGGTAAACCAT+CGG | + | chr1_1:51161545-51161564 | Msa0026960:intron | 30.0% | |
| AGGATCACTAAAATAGTCAT+TGG | - | chr1_1:51161590-51161609 | None:intergenic | 30.0% | |
| TGATCCTTCTTACATATTAG+AGG | + | chr1_1:51161603-51161622 | Msa0026960:intron | 30.0% | |
| ACTGAATCAATCCAAATGAA+GGG | - | chr1_1:51161713-51161732 | None:intergenic | 30.0% | |
| TGATTTCAAACTTTACTGGT+TGG | + | chr1_1:51161779-51161798 | Msa0026960:intron | 30.0% | |
| ! | GATTTCAAACTTTACTGGTT+GGG | + | chr1_1:51161780-51161799 | Msa0026960:intron | 30.0% |
| GTGCAACATATTTGTAAGTA+TGG | + | chr1_1:51161802-51161821 | Msa0026960:intron | 30.0% | |
| TAAGGTTGAAATAGGAAAAC+AGG | + | chr1_1:51161873-51161892 | Msa0026960:intron | 30.0% | |
| !!! | ATGAATGAAAGGCATTTTCT+GGG | + | chr1_1:51162030-51162049 | Msa0026960:intron | 30.0% |
| GTCATGTGCATAATCATTAA+TGG | + | chr1_1:51162334-51162353 | Msa0026960:intron | 30.0% | |
| GTCAAGAGTTTGTAAAATAG+AGG | + | chr1_1:51162392-51162411 | Msa0026960:intron | 30.0% | |
| ! | TATTGTAAAAGTATGTGCCA+TGG | + | chr1_1:51162433-51162452 | Msa0026960:intron | 30.0% |
| TTTGCAAATCGAAGTTTGAA+TGG | - | chr1_1:51162633-51162652 | None:intergenic | 30.0% | |
| !!! | AAGCTGTTTTTCTGTACATT+GGG | - | chr1_1:51162819-51162838 | None:intergenic | 30.0% |
| !!! | TAAGCTGTTTTTCTGTACAT+TGG | - | chr1_1:51162820-51162839 | None:intergenic | 30.0% |
| !!! | AGAAGGCATTTTGTTTTTTG+GGG | + | chr1_1:51162846-51162865 | Msa0026960:intron | 30.0% |
| GGTTGAATAAACAGCTTATT+AGG | + | chr1_1:51162867-51162886 | Msa0026960:intron | 30.0% | |
| ATAAACAGCTTATTAGGCAT+TGG | + | chr1_1:51162873-51162892 | Msa0026960:intron | 30.0% | |
| TAAACAGCTTATTAGGCATT+GGG | + | chr1_1:51162874-51162893 | Msa0026960:intron | 30.0% | |
| !!! | TACAGGCATTTTGTTTTTTG+GGG | + | chr1_1:51162956-51162975 | Msa0026960:intron | 30.0% |
| GGTTGAATAAACAGCTTATT+AGG | + | chr1_1:51162867-51162886 | Msa0026960:intron | 30.0% | |
| ATAAACAGCTTATTAGGCAT+TGG | + | chr1_1:51162873-51162892 | Msa0026960:intron | 30.0% | |
| TAAACAGCTTATTAGGCATT+GGG | + | chr1_1:51162874-51162893 | Msa0026960:intron | 30.0% | |
| ! | TTGCAATTTTGTCCTTTAGT+AGG | + | chr1_1:51163157-51163176 | Msa0026960:intron | 30.0% |
| ! | TCAAAACTTTCAAGCTGTTT+TGG | + | chr1_1:51163282-51163301 | Msa0026960:intron | 30.0% |
| !!! | ACATTGGTGTTTTTTCACAT+TGG | + | chr1_1:51163635-51163654 | Msa0026960:intron | 30.0% |
| !! | GAATCTCGTTTTTGTATTCT+GGG | + | chr1_1:51164035-51164054 | Msa0026960:three_prime_UTR | 30.0% |
| !! | AATCTCGTTTTTGTATTCTG+GGG | + | chr1_1:51164036-51164055 | Msa0026960:three_prime_UTR | 30.0% |
| TTTCTCAATTGAATATGCAC+AGG | + | chr1_1:51164085-51164104 | Msa0026960:three_prime_UTR | 30.0% | |
| ATGCCTTGAATTCTGTTAAT+AGG | + | chr1_1:51164130-51164149 | Msa0026960:three_prime_UTR | 30.0% | |
| CAACCTATTAACAGAATTCA+AGG | - | chr1_1:51164136-51164155 | None:intergenic | 30.0% | |
| TAAACTTGGCTCAAAAAATC+TGG | - | chr1_1:51164176-51164195 | None:intergenic | 30.0% | |
| AAATTTGAGGAGGAATGCTA+AGG | - | chr1_1:51159844-51159863 | None:intergenic | 35.0% | |
| CATATGGATGCTCAATCAAT+GGG | + | chr1_1:51159911-51159930 | Msa0026960:CDS | 35.0% | |
| TGATATCGGAAGTGAATTGA+GGG | - | chr1_1:51159998-51160017 | None:intergenic | 35.0% | |
| TTGATATCGGAAGTGAATTG+AGG | - | chr1_1:51159999-51160018 | None:intergenic | 35.0% | |
| ATGAACTACTTTGTCATGCT+TGG | + | chr1_1:51160221-51160240 | Msa0026960:intron | 35.0% | |
| ATAATCACCCAACTCACAAA+AGG | - | chr1_1:51160298-51160317 | None:intergenic | 35.0% | |
| !! | TTTTGTGAGTTGGGTGATTA+TGG | + | chr1_1:51160297-51160316 | Msa0026960:intron | 35.0% |
| TTGTTACCAATTTACCTACG+GGG | + | chr1_1:51160337-51160356 | Msa0026960:intron | 35.0% | |
| AGAGCAAATTATGTTGCAAG+AGG | + | chr1_1:51160379-51160398 | Msa0026960:intron | 35.0% | |
| TAGGTTCATCTATGCTTTCA+TGG | + | chr1_1:51160659-51160678 | Msa0026960:intron | 35.0% | |
| AGGTTCATCTATGCTTTCAT+GGG | + | chr1_1:51160660-51160679 | Msa0026960:intron | 35.0% | |
| ! | TGGCATTTTCAAAAAGGTCA+AGG | - | chr1_1:51160913-51160932 | None:intergenic | 35.0% |
| CCAGTATACAGTACTAATCA+CGG | + | chr1_1:51160930-51160949 | Msa0026960:intron | 35.0% | |
| TCATTGCAATTGATCGTCAA+TGG | + | chr1_1:51160986-51161005 | Msa0026960:CDS | 35.0% | |
| CATACTACAGTCGTTAGAAA+AGG | - | chr1_1:51161081-51161100 | None:intergenic | 35.0% | |
| CAAGATATATGTAGATGGGT+TGG | + | chr1_1:51161180-51161199 | Msa0026960:CDS | 35.0% | |
| ! | AATTGCTGTTCTTGTAGTTC+AGG | + | chr1_1:51161203-51161222 | Msa0026960:CDS | 35.0% |
| ATGAGTGGTCACAAAAAAGT+AGG | - | chr1_1:51161267-51161286 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGTGACCACTCAT+TGG | + | chr1_1:51161267-51161286 | Msa0026960:intron | 35.0% |
| !! | TCAGCTGTTACTTTGTTAGT+AGG | - | chr1_1:51161417-51161436 | None:intergenic | 35.0% |
| AACGCCTCTAATATGTAAGA+AGG | - | chr1_1:51161610-51161629 | None:intergenic | 35.0% | |
| CTGAATCAATCCAAATGAAG+GGG | - | chr1_1:51161712-51161731 | None:intergenic | 35.0% | |
| CACTGAATCAATCCAAATGA+AGG | - | chr1_1:51161714-51161733 | None:intergenic | 35.0% | |
| CATACACAATTAAATGTGCC+AGG | - | chr1_1:51161928-51161947 | None:intergenic | 35.0% | |
| AATTGCACTGCATGAATGAA+AGG | + | chr1_1:51162019-51162038 | Msa0026960:intron | 35.0% | |
| !!! | CATGAATGAAAGGCATTTTC+TGG | + | chr1_1:51162029-51162048 | Msa0026960:intron | 35.0% |
| CCAGACTGATGATTTAATAG+GGG | - | chr1_1:51162211-51162230 | None:intergenic | 35.0% | |
| GCCAGACTGATGATTTAATA+GGG | - | chr1_1:51162212-51162231 | None:intergenic | 35.0% | |
| ATCGTAAACAAAACTGTGCT+TGG | + | chr1_1:51162532-51162551 | Msa0026960:intron | 35.0% | |
| TCGTAAACAAAACTGTGCTT+GGG | + | chr1_1:51162533-51162552 | Msa0026960:intron | 35.0% | |
| GTCAACTATCCCTTTAGATT+AGG | + | chr1_1:51162754-51162773 | Msa0026960:intron | 35.0% | |
| TATCCCTTTAGATTAGGTCT+AGG | + | chr1_1:51162760-51162779 | Msa0026960:intron | 35.0% | |
| TGACCTAGACCTAATCTAAA+GGG | - | chr1_1:51162766-51162785 | None:intergenic | 35.0% | |
| ATGACCTAGACCTAATCTAA+AGG | - | chr1_1:51162767-51162786 | None:intergenic | 35.0% | |
| TTTAGATTAGGTCTAGGTCA+TGG | + | chr1_1:51162766-51162785 | Msa0026960:intron | 35.0% | |
| TTTGCATCCCAGAGTAAAAA+TGG | - | chr1_1:51163390-51163409 | None:intergenic | 35.0% | |
| CAAACCACAAACCAAAAAGA+AGG | - | chr1_1:51163855-51163874 | None:intergenic | 35.0% | |
| CTTCAGAGAACAACAACAAT+TGG | - | chr1_1:51163931-51163950 | None:intergenic | 35.0% | |
| !! | GGAATCTCGTTTTTGTATTC+TGG | + | chr1_1:51164034-51164053 | Msa0026960:three_prime_UTR | 35.0% |
| !!! | AGTCGCATTTTTAGGGTTTC+TGG | - | chr1_1:51159804-51159823 | None:intergenic | 40.0% |
| ! | GCAATGGAGTCGCATTTTTA+GGG | - | chr1_1:51159811-51159830 | None:intergenic | 40.0% |
| ! | AGCAATGGAGTCGCATTTTT+AGG | - | chr1_1:51159812-51159831 | None:intergenic | 40.0% |
| CTAAGGAAAAATGGCAGCAA+TGG | - | chr1_1:51159827-51159846 | None:intergenic | 40.0% | |
| GGAGGAATGCTAAGGAAAAA+TGG | - | chr1_1:51159836-51159855 | None:intergenic | 40.0% | |
| ! | CCATTGATTGAGCATCCATA+TGG | - | chr1_1:51159913-51159932 | None:intergenic | 40.0% |
| CCATATGGATGCTCAATCAA+TGG | + | chr1_1:51159910-51159929 | Msa0026960:CDS | 40.0% | |
| GATATCGGAAGTGAATTGAG+GGG | - | chr1_1:51159997-51160016 | None:intergenic | 40.0% | |
| AAAATGAAGGGAACGAACCA+AGG | - | chr1_1:51160032-51160051 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTTTGGGTACTGTG+AGG | + | chr1_1:51160162-51160181 | Msa0026960:intron | 40.0% |
| TGTTACCAATTTACCTACGG+GGG | + | chr1_1:51160338-51160357 | Msa0026960:intron | 40.0% | |
| GAATCTACACTGCTTCTTTG+TGG | + | chr1_1:51160544-51160563 | Msa0026960:intron | 40.0% | |
| ATCTATGCTTTCATGGGTGT+GGG | + | chr1_1:51160666-51160685 | Msa0026960:CDS | 40.0% | |
| TTTCATGGGTGTGGGAATAT+TGG | + | chr1_1:51160674-51160693 | Msa0026960:CDS | 40.0% | |
| CCGTGATTAGTACTGTATAC+TGG | - | chr1_1:51160933-51160952 | None:intergenic | 40.0% | |
| AATTGATCGTCAATGGCAAG+AGG | + | chr1_1:51160993-51161012 | Msa0026960:CDS | 40.0% | |
| ! | TTTAAAGAGAGTATGGGGTG+AGG | - | chr1_1:51161029-51161048 | None:intergenic | 40.0% |
| TCAACCGGAAGATCCTATAA+AGG | - | chr1_1:51161114-51161133 | None:intergenic | 40.0% | |
| !! | TTTCTGCTGCCTTTTGCTAT+TGG | + | chr1_1:51161234-51161253 | Msa0026960:intron | 40.0% |
| !!! | TGCCTTTTGCTATTGGCATT+TGG | + | chr1_1:51161241-51161260 | Msa0026960:intron | 40.0% |
| CTTACTCGTTTACCAATGAG+TGG | - | chr1_1:51161282-51161301 | None:intergenic | 40.0% | |
| TAAGGTGGCTTAGTGGTTTA+AGG | + | chr1_1:51161332-51161351 | Msa0026960:intron | 40.0% | |
| AAGGTGGCTTAGTGGTTTAA+GGG | + | chr1_1:51161333-51161352 | Msa0026960:intron | 40.0% | |
| ! | ACTCGTTGGAGTGATAATGA+AGG | + | chr1_1:51161374-51161393 | Msa0026960:intron | 40.0% |
| ! | CTCGTTGGAGTGATAATGAA+GGG | + | chr1_1:51161375-51161394 | Msa0026960:intron | 40.0% |
| GAAGATTCAGTGTACACTCA+TGG | - | chr1_1:51161646-51161665 | None:intergenic | 40.0% | |
| CTAGATGGATGAACTTCGTA+GGG | - | chr1_1:51161670-51161689 | None:intergenic | 40.0% | |
| TCTAGATGGATGAACTTCGT+AGG | - | chr1_1:51161671-51161690 | None:intergenic | 40.0% | |
| !! | GGAGCAAGAAAAGTTCTAGA+TGG | - | chr1_1:51161685-51161704 | None:intergenic | 40.0% |
| GTTTGAATTGAGGAGACGAT+AGG | + | chr1_1:51161747-51161766 | Msa0026960:intron | 40.0% | |
| ACCTCAGGCATTATCTCTAT+TGG | + | chr1_1:51162096-51162115 | Msa0026960:intron | 40.0% | |
| ACCAATAGAGATAATGCCTG+AGG | - | chr1_1:51162100-51162119 | None:intergenic | 40.0% | |
| !!! | AAGAGCAGATTTTGATGACG+AGG | + | chr1_1:51162153-51162172 | Msa0026960:CDS | 40.0% |
| ACGAGGAGGAATATGATGTT+AGG | + | chr1_1:51162170-51162189 | Msa0026960:CDS | 40.0% | |
| CGAGGAGGAATATGATGTTA+GGG | + | chr1_1:51162171-51162190 | Msa0026960:CDS | 40.0% | |
| GAGGAGGAATATGATGTTAG+GGG | + | chr1_1:51162172-51162191 | Msa0026960:CDS | 40.0% | |
| ATGATGTTAGGGGTAGAAGT+CGG | + | chr1_1:51162182-51162201 | Msa0026960:CDS | 40.0% | |
| CCCCTATTAAATCATCAGTC+TGG | + | chr1_1:51162208-51162227 | Msa0026960:CDS | 40.0% | |
| GGCCAGACTGATGATTTAAT+AGG | - | chr1_1:51162213-51162232 | None:intergenic | 40.0% | |
| TTGTAAAATAGAGGCTGAGC+CGG | + | chr1_1:51162401-51162420 | Msa0026960:intron | 40.0% | |
| ! | TGATCAAGGTCGAGTTTTCT+AGG | + | chr1_1:51162505-51162524 | Msa0026960:intron | 40.0% |
| ATGGAGCGAGAACGAATTTA+GGG | - | chr1_1:51162614-51162633 | None:intergenic | 40.0% | |
| AATGGAGCGAGAACGAATTT+AGG | - | chr1_1:51162615-51162634 | None:intergenic | 40.0% | |
| TTCTGTACATTGGGCCTTAA+GGG | - | chr1_1:51162810-51162829 | None:intergenic | 40.0% | |
| TTTCTGTACATTGGGCCTTA+AGG | - | chr1_1:51162811-51162830 | None:intergenic | 40.0% | |
| GATTGGTAAGCTCCTACTAA+AGG | - | chr1_1:51163172-51163191 | None:intergenic | 40.0% | |
| ATGAAAGATCGGAACACGAT+TGG | - | chr1_1:51163189-51163208 | None:intergenic | 40.0% | |
| ATCGTGTTCCGATCTTTCAT+CGG | + | chr1_1:51163189-51163208 | Msa0026960:intron | 40.0% | |
| TCAAACACGAGATTGCAAGT+AGG | - | chr1_1:51163224-51163243 | None:intergenic | 40.0% | |
| ATCTCGTGTTTGACTACACT+TGG | + | chr1_1:51163231-51163250 | Msa0026960:intron | 40.0% | |
| ACCAATATGAGTGTGTTCTG+CGG | + | chr1_1:51163410-51163429 | Msa0026960:intron | 40.0% | |
| ! | TTGCAGTACGGATTGAACAA+TGG | + | chr1_1:51163683-51163702 | Msa0026960:intron | 40.0% |
| !! | AAGAAGGAGAGGTGTGTTTT+TGG | - | chr1_1:51163839-51163858 | None:intergenic | 40.0% |
| ! | AACACACCTCTCCTTCTTTT+TGG | + | chr1_1:51163841-51163860 | Msa0026960:three_prime_UTR | 40.0% |
| CACAAACCAAAAAGAAGGAG+AGG | - | chr1_1:51163850-51163869 | None:intergenic | 40.0% | |
| !!! | CTCTCCTTCTTTTTGGTTTG+TGG | + | chr1_1:51163848-51163867 | Msa0026960:three_prime_UTR | 40.0% |
| CAGAGAACAACAACAATTGG+AGG | - | chr1_1:51163928-51163947 | None:intergenic | 40.0% | |
| ! | TCTCAGTTCTGCACAGATTT+TGG | + | chr1_1:51163955-51163974 | Msa0026960:three_prime_UTR | 40.0% |
| AGGAAGAGAGAGGCAAAGAT+GGG | - | chr1_1:51159964-51159983 | None:intergenic | 45.0% | |
| GGAAGTGAATTGAGGGGAAA+AGG | - | chr1_1:51159991-51160010 | None:intergenic | 45.0% | |
| AGGAGCGGGAAGATTGATAT+CGG | - | chr1_1:51160012-51160031 | None:intergenic | 45.0% | |
| ATATCAATCTTCCCGCTCCT+TGG | + | chr1_1:51160012-51160031 | Msa0026960:CDS | 45.0% | |
| GTTACCAATTTACCTACGGG+GGG | + | chr1_1:51160339-51160358 | Msa0026960:intron | 45.0% | |
| TTACCAATTTACCTACGGGG+GGG | + | chr1_1:51160340-51160359 | Msa0026960:intron | 45.0% | |
| ! | CTGTAAAGACTAGTCACTCG+AGG | - | chr1_1:51160428-51160447 | None:intergenic | 45.0% |
| CATCTATGCTTTCATGGGTG+TGG | + | chr1_1:51160665-51160684 | Msa0026960:CDS | 45.0% | |
| GTGTGCTGCATTGCTTTCTT+TGG | + | chr1_1:51160696-51160715 | Msa0026960:CDS | 45.0% | |
| TGTTCTACTTGAGGCTGCTT+TGG | + | chr1_1:51160957-51160976 | Msa0026960:CDS | 45.0% | |
| ATTTGACCGGTTGGATCAAC+CGG | - | chr1_1:51161129-51161148 | None:intergenic | 45.0% | |
| TCGAAGACTCGCAATTTGAC+CGG | - | chr1_1:51161142-51161161 | None:intergenic | 45.0% | |
| GGCCAAATGCCAATAGCAAA+AGG | - | chr1_1:51161246-51161265 | None:intergenic | 45.0% | |
| AGGTGGCTTAGTGGTTTAAG+GGG | + | chr1_1:51161334-51161353 | Msa0026960:intron | 45.0% | |
| !! | TACTCTGAAGTCTGAACCGA+TGG | - | chr1_1:51161564-51161583 | None:intergenic | 45.0% |
| CAATCCAAATGAAGGGGAGA+GGG | - | chr1_1:51161706-51161725 | None:intergenic | 45.0% | |
| TCAATCCAAATGAAGGGGAG+AGG | - | chr1_1:51161707-51161726 | None:intergenic | 45.0% | |
| ! | CCAGGCAAAGCGTTTAATCT+AGG | - | chr1_1:51161910-51161929 | None:intergenic | 45.0% |
| CCTAGATTAAACGCTTTGCC+TGG | + | chr1_1:51161907-51161926 | Msa0026960:intron | 45.0% | |
| TGCTCTTCGAGTAGAAACTG+TGG | - | chr1_1:51162140-51162159 | None:intergenic | 45.0% | |
| !!! | AGCAGATTTTGATGACGAGG+AGG | + | chr1_1:51162156-51162175 | Msa0026960:CDS | 45.0% |
| TGATGTTAGGGGTAGAAGTC+GGG | + | chr1_1:51162183-51162202 | Msa0026960:CDS | 45.0% | |
| TCAAGCAAAGGCGATATCAG+AGG | + | chr1_1:51162244-51162263 | Msa0026960:CDS | 45.0% | |
| ! | TCTCTGACGTTTGGAGTTCA+CGG | + | chr1_1:51162272-51162291 | Msa0026960:CDS | 45.0% |
| ! | AGAGAAGGTATGCTACTCTG+AGG | + | chr1_1:51162300-51162319 | Msa0026960:intron | 45.0% |
| ATCTGAGAAGGATCGCTGTT+CGG | + | chr1_1:51162474-51162493 | Msa0026960:intron | 45.0% | |
| GTTCGGTCAGTTCATGATCA+AGG | + | chr1_1:51162491-51162510 | Msa0026960:intron | 45.0% | |
| ! | TGTGCTTGGGTCACTGTTTT+GGG | + | chr1_1:51162546-51162565 | Msa0026960:intron | 45.0% |
| GTCGGGTTTGGGGAAAAAAT+TGG | + | chr1_1:51162568-51162587 | Msa0026960:intron | 45.0% | |
| GATTAGGTCTAGGTCATGGT+TGG | + | chr1_1:51162770-51162789 | Msa0026960:intron | 45.0% | |
| TCATGGTTGGAGACAAAGTC+TGG | + | chr1_1:51162783-51162802 | Msa0026960:intron | 45.0% | |
| CATGGTTGGAGACAAAGTCT+GGG | + | chr1_1:51162784-51162803 | Msa0026960:intron | 45.0% | |
| AGATTGCAAGTAGGACTGGA+AGG | - | chr1_1:51163215-51163234 | None:intergenic | 45.0% | |
| ACCGCAGAACACACTCATAT+TGG | - | chr1_1:51163414-51163433 | None:intergenic | 45.0% | |
| CGCAATAGACAACACTGAAC+AGG | - | chr1_1:51163477-51163496 | None:intergenic | 45.0% | |
| CAGAGTCTGCTCGATTACAT+TGG | + | chr1_1:51163619-51163638 | Msa0026960:intron | 45.0% | |
| AGTTACGAAGCGTGAGTTAC+AGG | + | chr1_1:51163716-51163735 | Msa0026960:exon | 45.0% | |
| AGCTGTCAAGCAATTCAGTG+TGG | + | chr1_1:51163753-51163772 | Msa0026960:three_prime_UTR | 45.0% | |
| GAACAACAACAATTGGAGGC+TGG | - | chr1_1:51163924-51163943 | None:intergenic | 45.0% | |
| !!! | CGTTTTTGTATTCTGGGGTG+AGG | + | chr1_1:51164041-51164060 | Msa0026960:three_prime_UTR | 45.0% |
| ! | AGTCGTCAGTGTTGTTGCTT+TGG | + | chr1_1:51164210-51164229 | Msa0026960:three_prime_UTR | 45.0% |
| !! | GTCGTCAGTGTTGTTGCTTT+GGG | + | chr1_1:51164211-51164230 | Msa0026960:three_prime_UTR | 45.0% |
| !!! | AAATGTTTTTTTTTTTTTTT+TGG | + | chr1_1:51160145-51160164 | Msa0026960:intron | 5.0% |
| GGAAGAGAGAGGCAAAGATG+GGG | - | chr1_1:51159963-51159982 | None:intergenic | 50.0% | |
| GAGGAAGAGAGAGGCAAAGA+TGG | - | chr1_1:51159965-51159984 | None:intergenic | 50.0% | |
| AAAAGGAGCGAGGAAGAGAG+AGG | - | chr1_1:51159974-51159993 | None:intergenic | 50.0% | |
| AATTGAGGGGAAAAGGAGCG+AGG | - | chr1_1:51159984-51160003 | None:intergenic | 50.0% | |
| CACGGCACTTGTTCTACTTG+AGG | + | chr1_1:51160948-51160967 | Msa0026960:CDS | 50.0% | |
| ! | TCTACTTGAGGCTGCTTTGG+TGG | + | chr1_1:51160960-51160979 | Msa0026960:CDS | 50.0% |
| GATCTTCCGGTTGATCCAAC+CGG | + | chr1_1:51161120-51161139 | Msa0026960:CDS | 50.0% | |
| AGACTCGCAATTTGACCGGT+TGG | - | chr1_1:51161138-51161157 | None:intergenic | 50.0% | |
| GGACTGATAAGGTGGCTTAG+TGG | + | chr1_1:51161325-51161344 | Msa0026960:intron | 50.0% | |
| GGCTTAGTGGTTTAAGGGGT+CGG | + | chr1_1:51161338-51161357 | Msa0026960:intron | 50.0% | |
| TGGTTTAAGGGGTCGGACAT+AGG | + | chr1_1:51161345-51161364 | Msa0026960:intron | 50.0% | |
| GGTTTAAGGGGTCGGACATA+GGG | + | chr1_1:51161346-51161365 | Msa0026960:intron | 50.0% | |
| GTTTAAGGGGTCGGACATAG+GGG | + | chr1_1:51161347-51161366 | Msa0026960:intron | 50.0% | |
| ATCAGTCTGGCCAAACAGCT+GGG | + | chr1_1:51162221-51162240 | Msa0026960:CDS | 50.0% | |
| CTTTGCTTGACCCAGCTGTT+TGG | - | chr1_1:51162234-51162253 | None:intergenic | 50.0% | |
| CAAACAGCTGGGTCAAGCAA+AGG | + | chr1_1:51162232-51162251 | Msa0026960:CDS | 50.0% | |
| GAGGAAACCTCTCTGACGTT+TGG | + | chr1_1:51162263-51162282 | Msa0026960:CDS | 50.0% | |
| GTGAACTCCAAACGTCAGAG+AGG | - | chr1_1:51162273-51162292 | None:intergenic | 50.0% | |
| GAGTTCACGGATGAGAGAGA+AGG | + | chr1_1:51162285-51162304 | Msa0026960:CDS | 50.0% | |
| TCTCAGATCGCAGCACACTA+CGG | - | chr1_1:51162462-51162481 | None:intergenic | 50.0% | |
| TAGTGTGCTGCGATCTGAGA+AGG | + | chr1_1:51162462-51162481 | Msa0026960:intron | 50.0% | |
| ! | CTGTGCTTGGGTCACTGTTT+TGG | + | chr1_1:51162545-51162564 | Msa0026960:intron | 50.0% |
| !! | CTTGGGTCACTGTTTTGGGT+CGG | + | chr1_1:51162550-51162569 | Msa0026960:intron | 50.0% |
| !! | TTGGGTCACTGTTTTGGGTC+GGG | + | chr1_1:51162551-51162570 | Msa0026960:intron | 50.0% |
| !! | TCACTGTTTTGGGTCGGGTT+TGG | + | chr1_1:51162556-51162575 | Msa0026960:intron | 50.0% |
| !! | CACTGTTTTGGGTCGGGTTT+GGG | + | chr1_1:51162557-51162576 | Msa0026960:intron | 50.0% |
| !! | ACTGTTTTGGGTCGGGTTTG+GGG | + | chr1_1:51162558-51162577 | Msa0026960:intron | 50.0% |
| ! | AGAGGAGATTTTGCGCAGCA+GGG | - | chr1_1:51162700-51162719 | None:intergenic | 50.0% |
| ! | AAGAGGAGATTTTGCGCAGC+AGG | - | chr1_1:51162701-51162720 | None:intergenic | 50.0% |
| AGACAAAGTCTGGGCCCTTA+AGG | + | chr1_1:51162793-51162812 | Msa0026960:intron | 50.0% | |
| CTGGAAGGCCGATGAAAGAT+CGG | - | chr1_1:51163200-51163219 | None:intergenic | 50.0% | |
| CACGAGATTGCAAGTAGGAC+TGG | - | chr1_1:51163219-51163238 | None:intergenic | 50.0% | |
| TCTGCGGTGTGTCATGGTTA+AGG | + | chr1_1:51163426-51163445 | Msa0026960:intron | 50.0% | |
| AGATGGGGAAGAGGTGGTTG+AGG | - | chr1_1:51159948-51159967 | None:intergenic | 55.0% | |
| AGGCAAAGATGGGGAAGAGG+TGG | - | chr1_1:51159954-51159973 | None:intergenic | 55.0% | |
| GAGAGGCAAAGATGGGGAAG+AGG | - | chr1_1:51159957-51159976 | None:intergenic | 55.0% | |
| AAGGGAACGAACCAAGGAGC+GGG | - | chr1_1:51160026-51160045 | None:intergenic | 55.0% | |
| GAAGGGAACGAACCAAGGAG+CGG | - | chr1_1:51160027-51160046 | None:intergenic | 55.0% | |
| CAACCCCCCCGTAGGTAAAT+TGG | - | chr1_1:51160346-51160365 | None:intergenic | 55.0% | |
| CAATTTACCTACGGGGGGGT+TGG | + | chr1_1:51160344-51160363 | Msa0026960:intron | 55.0% | |
| GACATAGGGGTTGGACTCGT+TGG | + | chr1_1:51161360-51161379 | Msa0026960:intron | 55.0% | |
| TGCTCCCTCTCCCCTTCATT+TGG | + | chr1_1:51161699-51161718 | Msa0026960:intron | 55.0% | |
| CATCAGTCTGGCCAAACAGC+TGG | + | chr1_1:51162220-51162239 | Msa0026960:CDS | 55.0% | |
| GGGACAGCGTCACAGGTTAA+GGG | - | chr1_1:51162663-51162682 | None:intergenic | 55.0% | |
| CCAGCAGCAAGGAACGAAAG+AGG | - | chr1_1:51162718-51162737 | None:intergenic | 55.0% | |
| CCTCTTTCGTTCCTTGCTGC+TGG | + | chr1_1:51162715-51162734 | Msa0026960:intron | 55.0% | |
| CCTCACACAAACCAGCAGCA+AGG | - | chr1_1:51162729-51162748 | None:intergenic | 55.0% | |
| !! | CCTTGCTGCTGGTTTGTGTG+AGG | + | chr1_1:51162726-51162745 | Msa0026960:intron | 55.0% |
| !! | TGCTGCTGGTTTGTGTGAGG+CGG | + | chr1_1:51162729-51162748 | Msa0026960:intron | 55.0% |
| GTGTGTTCTGCGGTGTGTCA+TGG | + | chr1_1:51163420-51163439 | Msa0026960:intron | 55.0% | |
| ACTAGAACCAACCCCCCCGT+AGG | - | chr1_1:51160354-51160373 | None:intergenic | 60.0% | |
| !! | TACGGGGGGGTTGGTTCTAG+TGG | + | chr1_1:51160353-51160372 | Msa0026960:intron | 60.0% |
| AAGGGGTCGGACATAGGGGT+TGG | + | chr1_1:51161351-51161370 | Msa0026960:intron | 60.0% | |
| GGGGACAGCGTCACAGGTTA+AGG | - | chr1_1:51162664-51162683 | None:intergenic | 60.0% | |
| AGCAGGGACGAAGCGATTGG+GGG | - | chr1_1:51162684-51162703 | None:intergenic | 60.0% | |
| CAGCAGGGACGAAGCGATTG+GGG | - | chr1_1:51162685-51162704 | None:intergenic | 60.0% | |
| GCAGCAGGGACGAAGCGATT+GGG | - | chr1_1:51162686-51162705 | None:intergenic | 60.0% | |
| !! | TGCTGGTTTGTGTGAGGCGG+CGG | + | chr1_1:51162732-51162751 | Msa0026960:intron | 60.0% |
| GCAGCACACTACGGCAGCCA+TGG | - | chr1_1:51162453-51162472 | None:intergenic | 65.0% | |
| GATTGGGGGGACAGCGTCAC+AGG | - | chr1_1:51162670-51162689 | None:intergenic | 65.0% | |
| GCAGGGACGAAGCGATTGGG+GGG | - | chr1_1:51162683-51162702 | None:intergenic | 65.0% | |
| CGCAGCAGGGACGAAGCGAT+TGG | - | chr1_1:51162687-51162706 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51159641 | 51164254 | 51159641 | ID=Msa0026960;Name=Msa0026960 |
| chr1_1 | mRNA | 51159641 | 51164254 | 51159641 | ID=Msa0026960-mRNA-1;Parent=Msa0026960;Name=Msa0026960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|1|1|1|1|1|6|524|249 |
| chr1_1 | exon | 51159641 | 51160033 | 51159641 | ID=Msa0026960-mRNA-1:exon:14894;Parent=Msa0026960-mRNA-1 |
| chr1_1 | exon | 51160662 | 51160761 | 51160662 | ID=Msa0026960-mRNA-1:exon:14895;Parent=Msa0026960-mRNA-1 |
| chr1_1 | exon | 51160934 | 51161014 | 51160934 | ID=Msa0026960-mRNA-1:exon:14896;Parent=Msa0026960-mRNA-1 |
| chr1_1 | exon | 51161120 | 51161224 | 51161120 | ID=Msa0026960-mRNA-1:exon:14897;Parent=Msa0026960-mRNA-1 |
| chr1_1 | exon | 51162103 | 51162306 | 51162103 | ID=Msa0026960-mRNA-1:exon:14898;Parent=Msa0026960-mRNA-1 |
| chr1_1 | exon | 51163689 | 51164254 | 51163689 | ID=Msa0026960-mRNA-1:exon:14899;Parent=Msa0026960-mRNA-1 |
| chr1_1 | five_prime_UTR | 51159641 | 51159815 | 51159641 | ID=Msa0026960-mRNA-1:five_prime_utr;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51159816 | 51160033 | 51159816 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51160662 | 51160761 | 51160662 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51160934 | 51161014 | 51160934 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51161120 | 51161224 | 51161120 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51162103 | 51162306 | 51162103 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | CDS | 51163689 | 51163730 | 51163689 | ID=Msa0026960-mRNA-1:cds;Parent=Msa0026960-mRNA-1 |
| chr1_1 | three_prime_UTR | 51163731 | 51164254 | 51163731 | ID=Msa0026960-mRNA-1:three_prime_utr;Parent=Msa0026960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
