AlfalfaGEDB | Msa0027410

M. sativa cultivar zhongmu-4 / Msa0027410

KEGG: K12608
GO: GO:0003674 GO:0005215 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0010114 GO:0010218 GO:0050896
PFAM: PF00005.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0027410	XP_013468466.1	96.656	299	10	0	1	299	1	299	0.0	605

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0027410	sp\|Q3EDJ0\|AB19I_ARATH	76.408	284	61	3	16	299	13	290	9.51e-154	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027410	Msa0165320	0.998820	7.481044e-278	-8.615850e-47
Msa0027410	Msa1415920	0.832446	9.411860e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0027410	MtrunA17_Chr1g0183671	96.656	299	10	0	1	299	1	299	0.0	605
Msa0027410	MtrunA17_Chr1g0193051	55.431	267	111	5	10	270	6	270	1.10e-100	298

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0027410	AT1G03905.1	76.408	284	61	3	16	299	13	290	9.67e-155	434
Msa0027410	AT5G44110.1	74.061	293	62	4	8	299	3	282	7.82e-150	421
Msa0027410	AT1G03905.3	78.070	228	48	2	72	299	1	226	6.37e-125	356
Msa0027410	AT1G03905.2	78.070	228	48	2	72	299	1	226	6.37e-125	356
Msa0027410	AT1G03905.4	78.070	228	48	2	72	299	1	226	6.37e-125	356
Msa0027410	AT5G44110.2	76.555	209	44	2	8	215	3	207	1.31e-113	327
Msa0027410	AT5G02270.1	57.752	258	102	4	8	260	5	260	6.64e-104	306
Msa0027410	AT5G02270.2	52.817	284	101	5	8	260	5	286	7.58e-98	292
Msa0027410	AT5G44110.3	77.976	168	32	2	8	174	3	166	7.79e-91	270
Msa0027410	AT5G44110.4	80.556	144	28	0	72	215	1	144	8.15e-83	246

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Find 96 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGAACACGTTAGTGTAAA+TGG	0.202270	1_1:+51719163	None:intergenic
AACTAACCTGTGAATAGCTT+TGG	0.338548	1_1:-51713733	Msa0027410:three_prime_UTR
AACTACGTTGTTGAAGATTC+TGG	0.281207	1_1:-51718841	Msa0027410:CDS
AAGATGAATGAGATGGAACC+TGG	0.577301	1_1:+51719101	None:intergenic
AAGCTGCGTATCATGAAAAG+CGG	0.639042	1_1:+51718767	None:intergenic
ACAGAGAAGTCTCCCTGCAG+TGG	0.578011	1_1:+51717114	None:intergenic
ACGAGGAGGCATCTGGATCC+GGG	0.515626	1_1:+51718885	None:intergenic
ACGTTGTTGAAGATTCTGGC+TGG	0.524614	1_1:-51718837	Msa0027410:CDS
ACTAACCTGTGAATAGCTTT+GGG	0.352912	1_1:-51713732	Msa0027410:three_prime_UTR
ACTACTAAAAGCTGTTAAAT+TGG	0.262308	1_1:+51715002	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCAAATTCGAAATCACAA+TGG	-	chr1_1:51713789-51713808	Msa0027410:intron	30.0%
GATTACGCACTGTAATTTAT+TGG	-	chr1_1:51714322-51714341	Msa0027410:intron	30.0%
CAGCTTAATTAAGCATTCTA+GGG	-	chr1_1:51714377-51714396	Msa0027410:intron	30.0%
AAATAATAAGCCAATCCAGA+CGG	-	chr1_1:51714578-51714597	Msa0027410:intron	30.0%
TAGAATTAGGACTTGTATGT+TGG	-	chr1_1:51714883-51714902	Msa0027410:intron	30.0%
AGAATTAGGACTTGTATGTT+GGG	-	chr1_1:51714884-51714903	Msa0027410:intron	30.0%
CATTAAGAAGGAATAGAAAC+AGG	+	chr1_1:51715047-51715066	None:intergenic	30.0%
AGTAAAAACTCCCATTAAGA+AGG	+	chr1_1:51715059-51715078	None:intergenic	30.0%
CTGATATAATCTTAGTTTCG+AGG	-	chr1_1:51715077-51715096	Msa0027410:three_prime_UTR	30.0%
ATAATCTTAGTTTCGAGGAT+AGG	-	chr1_1:51715082-51715101	Msa0027410:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	51713642	51719208	51713642	ID=Msa0027410;Name=Msa0027410
chr1_1	mRNA	51713642	51719208	51713642	ID=Msa0027410-mRNA-1;Parent=Msa0027410;Name=Msa0027410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166\|1\|1\|1\|0.8\|0.66\|6\|340\|299
chr1_1	exon	51713642	51713777	51713642	ID=Msa0027410-mRNA-1:exon:15214;Parent=Msa0027410-mRNA-1
chr1_1	exon	51715013	51715504	51715013	ID=Msa0027410-mRNA-1:exon:15213;Parent=Msa0027410-mRNA-1
chr1_1	exon	51715821	51715907	51715821	ID=Msa0027410-mRNA-1:exon:15212;Parent=Msa0027410-mRNA-1
chr1_1	exon	51716682	51716818	51716682	ID=Msa0027410-mRNA-1:exon:15211;Parent=Msa0027410-mRNA-1
chr1_1	exon	51717094	51717145	51717094	ID=Msa0027410-mRNA-1:exon:15210;Parent=Msa0027410-mRNA-1
chr1_1	exon	51718707	51719208	51718707	ID=Msa0027410-mRNA-1:exon:15209;Parent=Msa0027410-mRNA-1
chr1_1	five_prime_UTR	51719043	51719208	51719043	ID=Msa0027410-mRNA-1:five_prime_utr;Parent=Msa0027410-mRNA-1
chr1_1	CDS	51718707	51719042	51718707	ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1
chr1_1	CDS	51717094	51717145	51717094	ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1
chr1_1	CDS	51716682	51716818	51716682	ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1
chr1_1	CDS	51715821	51715907	51715821	ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1
chr1_1	CDS	51715217	51715504	51715217	ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1
chr1_1	three_prime_UTR	51715013	51715216	51715013	ID=Msa0027410-mRNA-1:three_prime_utr;Parent=Msa0027410-mRNA-1
chr1_1	three_prime_UTR	51713642	51713777	51713642	ID=Msa0027410-mRNA-1:three_prime_utr;Parent=Msa0027410-mRNA-1

Gene Sequence

>Msa0027410

ATGGCAATAGAACAAAAACAAGAAGATAATGAAGATTCCTCGAGCGGAATCAGAGTCCAAGGAATGCAATTCTCCTACAACGACATCCAACAACAACAACCACCGCTCTTCGTCGATTTCAACCTCCACGTTTCTCCCGGATCCAGATGCCTCCTCGTCGGTGCTAACGGATCTGGTAAAACTACGTTGTTGAAGATTCTGGCTGGGAAGCATATGGTTGGAGGAAAAGACGTTGTTCGTGTTTTGAATTGTTCCGCTTTTCATGATACGCAGCTTGTTTGTAGTGGTGATCTTGCTTATTTGGGTGGATCTTGGAGTAAAAACGTTGGTTGCGCTGGAGACATTCCACTGCAGGGAGACTTCTCTGTTGAACATATGATATTCGGTGTTGAAGGTGTTGATCCTGACAGGAGAGACAAGTTGATTGAGCTGCTTGATATAGATCTGCAGTGGCGAATGCATAAGGTATCCGATGGGCAGCGGCGTCGAGTGCAAATCTGTTTGGGTCTTCTTCATCCTTATAAGGTTCTCTTGCTGGATGAGGTAACAGTTGACCTGGATGTTGTTACTCGAATGGATTTATTGGAATTCTTCAAGGAAGAATGTGAGCAGAGAGAAGCTACAATTGTATATGCAACTCACATTTTTGATGGACTGGAGACATGGGCAACTCATTTGGCATATATACAAGAAGGCGAATTGAGGAGAGCAGAAAAAATATCAGATGTTAAGGAGTTGAAATCTTCAATTAACCTGCTGTCTGTTGTCGAGTCCTGGCTCCGTGCTGAAACAAAGCTTGAAAAGAAGAAACCTGTCCAGAATACATCTAATGCTCAAGGGAATTCTTTTACTAGCTCTCCGTTCTCTTCATCATCCAGACACATGGCATACTATCGATAG

Protein sequence

>Msa0027410

MAIEQKQEDNEDSSSGIRVQGMQFSYNDIQQQQPPLFVDFNLHVSPGSRCLLVGANGSGKTTLLKILAGKHMVGGKDVVRVLNCSAFHDTQLVCSGDLAYLGGSWSKNVGCAGDIPLQGDFSVEHMIFGVEGVDPDRRDKLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPYKVLLLDEVTVDLDVVTRMDLLEFFKEECEQREATIVYATHIFDGLETWATHLAYIQEGELRRAEKISDVKELKSSINLLSVVESWLRAETKLEKKKPVQNTSNAQGNSFTSSPFSSSSRHMAYYR*