Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027410 | XP_013468466.1 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027410 | sp|Q3EDJ0|AB19I_ARATH | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 9.51e-154 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027410 | Msa0165320 | 0.998820 | 7.481044e-278 | -8.615850e-47 |
| Msa0027410 | Msa1415920 | 0.832446 | 9.411860e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027410 | MtrunA17_Chr1g0183671 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 605 |
| Msa0027410 | MtrunA17_Chr1g0193051 | 55.431 | 267 | 111 | 5 | 10 | 270 | 6 | 270 | 1.10e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027410 | AT1G03905.1 | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 9.67e-155 | 434 |
| Msa0027410 | AT5G44110.1 | 74.061 | 293 | 62 | 4 | 8 | 299 | 3 | 282 | 7.82e-150 | 421 |
| Msa0027410 | AT1G03905.3 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0027410 | AT1G03905.2 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0027410 | AT1G03905.4 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0027410 | AT5G44110.2 | 76.555 | 209 | 44 | 2 | 8 | 215 | 3 | 207 | 1.31e-113 | 327 |
| Msa0027410 | AT5G02270.1 | 57.752 | 258 | 102 | 4 | 8 | 260 | 5 | 260 | 6.64e-104 | 306 |
| Msa0027410 | AT5G02270.2 | 52.817 | 284 | 101 | 5 | 8 | 260 | 5 | 286 | 7.58e-98 | 292 |
| Msa0027410 | AT5G44110.3 | 77.976 | 168 | 32 | 2 | 8 | 174 | 3 | 166 | 7.79e-91 | 270 |
| Msa0027410 | AT5G44110.4 | 80.556 | 144 | 28 | 0 | 72 | 215 | 1 | 144 | 8.15e-83 | 246 |
Find 96 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAATCTTCCCTTGTTTA+TGG | 0.082124 | 1_1:-51715046 | Msa0027410:three_prime_UTR |
| TGCCATTGTGATTTCGAATT+TGG | 0.083566 | 1_1:+51719037 | None:intergenic |
| TAGTGGTGATCTTGCTTATT+TGG | 0.198378 | 1_1:-51718739 | Msa0027410:CDS |
| AACGAACACGTTAGTGTAAA+TGG | 0.202270 | 1_1:+51719163 | None:intergenic |
| CTTGAGCATTAGATGTATTC+TGG | 0.205818 | 1_1:+51715279 | None:intergenic |
| TGTTACTCGAATGGATTTAT+TGG | 0.213870 | 1_1:-51715847 | Msa0027410:CDS |
| GGCATTTCAGGTTCTCTTGC+TGG | 0.245341 | 1_1:-51715895 | Msa0027410:intron |
| ACTACTAAAAGCTGTTAAAT+TGG | 0.262308 | 1_1:+51715002 | None:intergenic |
| GTAACTATTGAAAGTGTAAT+TGG | 0.265097 | 1_1:+51719073 | None:intergenic |
| AACTACGTTGTTGAAGATTC+TGG | 0.281207 | 1_1:-51718841 | Msa0027410:CDS |
| TTGCTTATTTGGGTGGATCT+TGG | 0.297721 | 1_1:-51718728 | Msa0027410:CDS |
| GGAGAGAGCGACGTGGATTA+TGG | 0.297797 | 1_1:-51719200 | None:intergenic |
| TCAATCCATGATACCTTATA+AGG | 0.305162 | 1_1:+51716668 | None:intergenic |
| AGGTAATCGCACAGAATATA+TGG | 0.307419 | 1_1:+51713635 | None:intergenic |
| GTGGATTATGGTTTATTCAT+AGG | 0.312133 | 1_1:-51719188 | Msa0027410:five_prime_UTR |
| GGGTCTTCTTCATCCTTATA+AGG | 0.319104 | 1_1:-51716681 | Msa0027410:intron |
| TGATTCTGATTAGGAAAATA+TGG | 0.333798 | 1_1:-51713708 | Msa0027410:three_prime_UTR |
| AACTAACCTGTGAATAGCTT+TGG | 0.338548 | 1_1:-51713733 | Msa0027410:three_prime_UTR |
| TCTGTTGAACATATGATATT+CGG | 0.343275 | 1_1:-51717096 | Msa0027410:CDS |
| ACTAACCTGTGAATAGCTTT+GGG | 0.352912 | 1_1:-51713732 | Msa0027410:three_prime_UTR |
| CACCAGCACGAACAATAAAA+AGG | 0.358016 | 1_1:-51713761 | Msa0027410:intron |
| GCTTTGGGGTGATTCTGATT+AGG | 0.364072 | 1_1:-51713717 | Msa0027410:three_prime_UTR |
| AGTGGTGATCTTGCTTATTT+GGG | 0.367794 | 1_1:-51718738 | Msa0027410:CDS |
| GACGAGGAGGCATCTGGATC+CGG | 0.373648 | 1_1:+51718884 | None:intergenic |
| TGCTGTCTGTTGTCGAGTCC+TGG | 0.392760 | 1_1:-51715340 | Msa0027410:CDS |
| GCGTCGAGTGCAAATCTGTT+TGG | 0.394075 | 1_1:-51716702 | Msa0027410:CDS |
| TTAGGAAAATATGGAAGTTA+AGG | 0.396164 | 1_1:-51713699 | Msa0027410:three_prime_UTR |
| GGAGACATGGGCAACTCATT+TGG | 0.399798 | 1_1:-51715438 | Msa0027410:CDS |
| TTGTTGTTGGATGTCGTTGT+AGG | 0.412895 | 1_1:+51718947 | None:intergenic |
| TTCAACCTCCACGTTTCTCC+CGG | 0.419734 | 1_1:-51718903 | Msa0027410:CDS |
| AGAGCGGTGGTTGTTGTTGT+TGG | 0.426946 | 1_1:+51718934 | None:intergenic |
| CGTCGAGTGCAAATCTGTTT+GGG | 0.431328 | 1_1:-51716701 | Msa0027410:CDS |
| TGTAGGAGAATTGCATTCCT+TGG | 0.435035 | 1_1:+51718964 | None:intergenic |
| GCTGTTAAATTGGAGCTTGA+AGG | 0.437197 | 1_1:+51715012 | None:intergenic |
| ATCAACTTGTCTCTCCTGTC+AGG | 0.438091 | 1_1:+51716782 | None:intergenic |
| CTTTGTTTCAGCACGGAGCC+AGG | 0.439414 | 1_1:+51715322 | None:intergenic |
| AGCACCGACGAGGAGGCATC+TGG | 0.446647 | 1_1:+51718878 | None:intergenic |
| CTGTTAAATTGGAGCTTGAA+GGG | 0.447060 | 1_1:+51715013 | None:intergenic |
| TGTAAACTAGAAAGCTTGTA+AGG | 0.448709 | 1_1:-51713667 | Msa0027410:three_prime_UTR |
| CTCGTCGGTGCTAACGGATC+TGG | 0.449071 | 1_1:-51718867 | Msa0027410:CDS |
| CACTCGACGCCGCTGCCCAT+CGG | 0.468540 | 1_1:+51716715 | None:intergenic |
| TCGATAGTATGCCATGTGTC+TGG | 0.475819 | 1_1:+51715220 | None:intergenic |
| GCATTAGATGTATTCTGGAC+AGG | 0.480572 | 1_1:+51715284 | None:intergenic |
| GGATTTATTGGAATTCTTCA+AGG | 0.489781 | 1_1:-51715835 | Msa0027410:CDS |
| TCAGGTTCTCTTGCTGGATG+AGG | 0.494180 | 1_1:-51715889 | Msa0027410:intron |
| TGCCTCCTCGTCGGTGCTAA+CGG | 0.499231 | 1_1:-51718873 | Msa0027410:CDS |
| TCTGCAGTGGCGAATGCATA+AGG | 0.499282 | 1_1:-51716741 | Msa0027410:CDS |
| CCAGGGAGACATTCCACTGC+AGG | 0.508285 | 1_1:-51717127 | Msa0027410:intron |
| TTGGACTCTGATTCCGCTCG+AGG | 0.511444 | 1_1:+51718983 | None:intergenic |
| ACGAGGAGGCATCTGGATCC+GGG | 0.515626 | 1_1:+51718885 | None:intergenic |
| CAGAATACATCTAATGCTCA+AGG | 0.515770 | 1_1:-51715278 | Msa0027410:CDS |
| ACGTTGTTGAAGATTCTGGC+TGG | 0.524614 | 1_1:-51718837 | Msa0027410:CDS |
| CCTGGATGTTGTTACTCGAA+TGG | 0.526845 | 1_1:-51715856 | Msa0027410:CDS |
| GGTGATCTTGCTTATTTGGG+TGG | 0.528094 | 1_1:-51718735 | Msa0027410:CDS |
| TTGAAGGTGTTGATCCTGAC+AGG | 0.537915 | 1_1:-51716796 | Msa0027410:CDS |
| CGTTGTTGAAGATTCTGGCT+GGG | 0.548568 | 1_1:-51718836 | Msa0027410:CDS |
| GATTCTGGCTGGGAAGCATA+TGG | 0.548571 | 1_1:-51718826 | Msa0027410:CDS |
| GCTGGGAAGCATATGGTTGG+AGG | 0.550659 | 1_1:-51718819 | Msa0027410:CDS |
| CGAATGCATAAGGTATCCGA+TGG | 0.557234 | 1_1:-51716731 | Msa0027410:CDS |
| GGAGACGAAGATGAATGAGA+TGG | 0.567285 | 1_1:+51719094 | None:intergenic |
| ATATACAAGAAGGCGAATTG+AGG | 0.569400 | 1_1:-51715412 | Msa0027410:CDS |
| CTTCAAGGAAGAATGTGAGC+AGG | 0.571124 | 1_1:-51715820 | Msa0027410:intron |
| ATCACCCCAAAGCTATTCAC+AGG | 0.572229 | 1_1:+51713727 | None:intergenic |
| TGTTAAATTGGAGCTTGAAG+GGG | 0.573464 | 1_1:+51715014 | None:intergenic |
| AAGATGAATGAGATGGAACC+TGG | 0.577301 | 1_1:+51719101 | None:intergenic |
| ACAGAGAAGTCTCCCTGCAG+TGG | 0.578011 | 1_1:+51717114 | None:intergenic |
| CTCTTCATCATCCAGACACA+TGG | 0.583208 | 1_1:-51715231 | Msa0027410:CDS |
| TGTAAGAATTAATTCGCATA+CGG | 0.586096 | 1_1:-51715140 | Msa0027410:three_prime_UTR |
| TCGAGCGGAATCAGAGTCCA+AGG | 0.594046 | 1_1:-51718981 | Msa0027410:CDS |
| TTTCAAGCTTTGTTTCAGCA+CGG | 0.594104 | 1_1:+51715315 | None:intergenic |
| ATAAGGTATCCGATGGGCAG+CGG | 0.595876 | 1_1:-51716724 | Msa0027410:CDS |
| CTGGCTGGGAAGCATATGGT+TGG | 0.597197 | 1_1:-51718822 | Msa0027410:CDS |
| CAGGGAGACATTCCACTGCA+GGG | 0.606306 | 1_1:-51717126 | Msa0027410:CDS |
| GGATGAGGTAACAGTTGACC+TGG | 0.608537 | 1_1:-51715874 | Msa0027410:CDS |
| CATTTGGCATATATACAAGA+AGG | 0.608932 | 1_1:-51715422 | Msa0027410:CDS |
| GGATCCAGATGCCTCCTCGT+CGG | 0.614264 | 1_1:-51718882 | Msa0027410:CDS |
| AGGACTCGACAACAGACAGC+AGG | 0.618187 | 1_1:+51715342 | None:intergenic |
| CCATTCGAGTAACAACATCC+AGG | 0.626459 | 1_1:+51715856 | None:intergenic |
| ATCCGTTAGCACCGACGAGG+AGG | 0.628749 | 1_1:+51718871 | None:intergenic |
| AAGCTGCGTATCATGAAAAG+CGG | 0.639042 | 1_1:+51718767 | None:intergenic |
| TTGAAATCGACGAAGAGCGG+TGG | 0.643066 | 1_1:+51718921 | None:intergenic |
| GGATTACATAGCCATAAACA+AGG | 0.643911 | 1_1:+51715035 | None:intergenic |
| AGAATACATCTAATGCTCAA+GGG | 0.644371 | 1_1:-51715277 | Msa0027410:CDS |
| ATCTGGATCCGGGAGAAACG+TGG | 0.646214 | 1_1:+51718895 | None:intergenic |
| GATAATGAAGATTCCTCGAG+CGG | 0.647869 | 1_1:-51718996 | Msa0027410:CDS |
| TTCCAAATTCGAAATCACAA+TGG | 0.650720 | 1_1:-51719039 | Msa0027410:exon |
| CTAACCTGTGAATAGCTTTG+GGG | 0.651569 | 1_1:-51713731 | Msa0027410:three_prime_UTR |
| AGGTTGAAATCGACGAAGAG+CGG | 0.661441 | 1_1:+51718918 | None:intergenic |
| GATACGCAGCTTGTTTGTAG+TGG | 0.661885 | 1_1:-51718756 | Msa0027410:CDS |
| TGCTTGATATAGATCTGCAG+TGG | 0.665729 | 1_1:-51716754 | Msa0027410:CDS |
| GAATGCATAAGGTATCCGAT+GGG | 0.681230 | 1_1:-51716730 | Msa0027410:CDS |
| GATTACATAGCCATAAACAA+GGG | 0.695374 | 1_1:+51715036 | None:intergenic |
| GTTGAACATATGATATTCGG+TGG | 0.700058 | 1_1:-51717093 | Msa0027410:intron |
| CAGATCCGTTAGCACCGACG+AGG | 0.705355 | 1_1:+51718868 | None:intergenic |
| TGGATCCGGGAGAAACGTGG+AGG | 0.721479 | 1_1:+51718898 | None:intergenic |
| TGTCTGGATGATGAAGAGAA+CGG | 0.762534 | 1_1:+51715236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATTATAAATTGAAAAA+TGG | + | chr1_1:51715808-51715827 | None:intergenic | 10.0% |
| !! | GTAATAAAAAAAAGTTAATT+TGG | + | chr1_1:51716390-51716409 | None:intergenic | 10.0% |
| !! | ATAATATATATTTATGTTAC+TGG | + | chr1_1:51717976-51717995 | None:intergenic | 10.0% |
| !!! | AATTTTTTGTTTAATGATTT+AGG | + | chr1_1:51718426-51718445 | None:intergenic | 10.0% |
| !! | AACTTATGAATTAACATAAA+CGG | + | chr1_1:51714445-51714464 | None:intergenic | 15.0% |
| !!! | ATTTTATGATATACTACTAA+TGG | + | chr1_1:51714605-51714624 | None:intergenic | 15.0% |
| !! | TTTATATAGGTATTAGTAAT+AGG | + | chr1_1:51715141-51715160 | None:intergenic | 15.0% |
| !! | AATAAATATTGTCCTTAATA+GGG | + | chr1_1:51715876-51715895 | None:intergenic | 15.0% |
| !! | TCAATATGATATCTAATTAT+TGG | - | chr1_1:51716803-51716822 | Msa0027410:intron | 15.0% |
| !!! | AAAAATTGTCTTTTTTAGTT+AGG | + | chr1_1:51717231-51717250 | None:intergenic | 15.0% |
| !!! | AAATTATTTTCATTTGCAAT+TGG | + | chr1_1:51717649-51717668 | None:intergenic | 15.0% |
| !!! | TATATAATTTTTTTTTCCCT+TGG | - | chr1_1:51717993-51718012 | Msa0027410:intron | 15.0% |
| !! | CAAAAATAAGTTAATCCAAA+CGG | + | chr1_1:51714403-51714422 | None:intergenic | 20.0% |
| !! | ATAAGCTGAAAATAACTTTA+TGG | - | chr1_1:51714678-51714697 | Msa0027410:intron | 20.0% |
| !! | TCAATTCAAAGTAAATACAA+AGG | + | chr1_1:51715239-51715258 | None:intergenic | 20.0% |
| !!! | GATTGATTTACTTTAAAGTT+TGG | - | chr1_1:51715398-51715417 | Msa0027410:CDS | 20.0% |
| !! | AACGACATTAATATTTGAAA+AGG | + | chr1_1:51715673-51715692 | None:intergenic | 20.0% |
| !! | CAATAAATATTGTCCTTAAT+AGG | + | chr1_1:51715877-51715896 | None:intergenic | 20.0% |
| !!! | TGTATATTGTGAGTTTTTAT+TGG | + | chr1_1:51716463-51716482 | None:intergenic | 20.0% |
| !! | TAAGATAATAGCACAATATT+TGG | + | chr1_1:51716508-51716527 | None:intergenic | 20.0% |
| !! | AGAAAAAATATCAGATGTTA+AGG | - | chr1_1:51717444-51717463 | Msa0027410:intron | 20.0% |
| !!! | AACCTAGCTAAATTTTTATT+TGG | + | chr1_1:51717735-51717754 | None:intergenic | 20.0% |
| !! | ACTTGATATATGTTTAATCA+AGG | - | chr1_1:51717886-51717905 | Msa0027410:intron | 20.0% |
| !!! | AACCATTCTCTAAATTTTAA+TGG | - | chr1_1:51718374-51718393 | Msa0027410:intron | 20.0% |
| !! | TAAATAATGAAACTAACATG+AGG | + | chr1_1:51718680-51718699 | None:intergenic | 20.0% |
| !!! | GTTTCATTATTTAATTTTCC+TGG | - | chr1_1:51718687-51718706 | Msa0027410:intron | 20.0% |
| !! | ATCAATTGAAATTTGAAAGA+TGG | - | chr1_1:51718725-51718744 | Msa0027410:CDS | 20.0% |
| !!! | ATGTTCTCTATTTTATCTAA+TGG | - | chr1_1:51718990-51719009 | Msa0027410:CDS | 20.0% |
| ! | ACTAGAAAAACTTAAAAACC+AGG | - | chr1_1:51713709-51713728 | Msa0027410:three_prime_UTR | 25.0% |
| !! | GTAACTATTGAAAGTGTAAT+TGG | + | chr1_1:51713758-51713777 | None:intergenic | 25.0% |
| !!! | TTCTCATTTTTAATGTCGTT+AGG | - | chr1_1:51714166-51714185 | Msa0027410:intron | 25.0% |
| !! | TTTTAATGTCGTTAGGAAAT+AGG | - | chr1_1:51714173-51714192 | Msa0027410:intron | 25.0% |
| ! | TTTAATGTCGTTAGGAAATA+GGG | - | chr1_1:51714174-51714193 | Msa0027410:intron | 25.0% |
| !! | AGGATGCTTTTCATATATTA+TGG | - | chr1_1:51714353-51714372 | Msa0027410:intron | 25.0% |
| ! | AAGGTAGTTAATGAAAAAAC+AGG | + | chr1_1:51714496-51714515 | None:intergenic | 25.0% |
| !! | TTGGCTTATTATTTAGCTTA+TGG | + | chr1_1:51714572-51714591 | None:intergenic | 25.0% |
| !! | GGACTGTTTAATAGATTTTA+TGG | + | chr1_1:51714722-51714741 | None:intergenic | 25.0% |
| ! | AATAAGCCGAAAACAAATTA+TGG | - | chr1_1:51714762-51714781 | Msa0027410:intron | 25.0% |
| !!! | ACATGTCCATAATTTGTTTT+CGG | + | chr1_1:51714771-51714790 | None:intergenic | 25.0% |
| !! | ATCTTGTTTAGTAGATCTTA+TGG | + | chr1_1:51714806-51714825 | None:intergenic | 25.0% |
| ! | ATTAAGAAGGAATAGAAACA+GGG | + | chr1_1:51715046-51715065 | None:intergenic | 25.0% |
| !! | TGTTTCTATTCCTTCTTAAT+GGG | - | chr1_1:51715046-51715065 | Msa0027410:three_prime_UTR | 25.0% |
| ! | GGAAGAGTTATACTTTATAT+AGG | + | chr1_1:51715154-51715173 | None:intergenic | 25.0% |
| !! | GTTTTCAAATTCTTAAGACA+AGG | - | chr1_1:51715186-51715205 | Msa0027410:three_prime_UTR | 25.0% |
| ! | TAAATGTTCCTAAAAAGTGA+GGG | + | chr1_1:51715270-51715289 | None:intergenic | 25.0% |
| ! | TTAAATGTTCCTAAAAAGTG+AGG | + | chr1_1:51715271-51715290 | None:intergenic | 25.0% |
| !!! | TCACTTTTTAGGAACATTTA+AGG | - | chr1_1:51715270-51715289 | Msa0027410:CDS | 25.0% |
| !!! | AACATTTAAGGCAAACATTT+TGG | - | chr1_1:51715282-51715301 | Msa0027410:CDS | 25.0% |
| !! | AAATTTTACGAGACTAAATG+TGG | - | chr1_1:51715313-51715332 | Msa0027410:CDS | 25.0% |
| !! | AATTTTACGAGACTAAATGT+GGG | - | chr1_1:51715314-51715333 | Msa0027410:CDS | 25.0% |
| ! | AGTAAATCAATCTATAGTTC+TGG | + | chr1_1:51715390-51715409 | None:intergenic | 25.0% |
| ! | TCTGTTGAACATATGATATT+CGG | - | chr1_1:51715732-51715751 | Msa0027410:intron | 25.0% |
| ! | AGTATATAAAGTTCAAACTC+AGG | + | chr1_1:51716251-51716270 | None:intergenic | 25.0% |
| ! | GAACTTTATATACTTTATCC+TGG | - | chr1_1:51716257-51716276 | Msa0027410:intron | 25.0% |
| ! | ACTAGAATTCAGATTAAAGA+GGG | + | chr1_1:51716307-51716326 | None:intergenic | 25.0% |
| ! | TACTAGAATTCAGATTAAAG+AGG | + | chr1_1:51716308-51716327 | None:intergenic | 25.0% |
| ! | TTTATGACAATTTGTAGACT+AGG | - | chr1_1:51716666-51716685 | Msa0027410:intron | 25.0% |
| ! | TTATGACAATTTGTAGACTA+GGG | - | chr1_1:51716667-51716686 | Msa0027410:intron | 25.0% |
| ! | TAAATTTGAGAAAACTGCAA+CGG | - | chr1_1:51717075-51717094 | Msa0027410:intron | 25.0% |
| ! | TGTAAGAATTAATTCGCATA+CGG | - | chr1_1:51717688-51717707 | Msa0027410:intron | 25.0% |
| ! | CACCAAATAAAAATTTAGCT+AGG | - | chr1_1:51717730-51717749 | Msa0027410:intron | 25.0% |
| ! | ACTACTAAAAGCTGTTAAAT+TGG | + | chr1_1:51717829-51717848 | None:intergenic | 25.0% |
| !! | GCTTTTAGTAGTTTTCTTTT+TGG | - | chr1_1:51717837-51717856 | Msa0027410:intron | 25.0% |
| ! | AATGTACAATAAAATCACGT+GGG | - | chr1_1:51717939-51717958 | Msa0027410:intron | 25.0% |
| ! | CTTAATCAAATGGTTAGAAA+AGG | + | chr1_1:51718071-51718090 | None:intergenic | 25.0% |
| ! | AAGATGAATAGTTGTTTGAA+GGG | + | chr1_1:51718214-51718233 | None:intergenic | 25.0% |
| ! | TGCCATTAAAATTTAGAGAA+TGG | + | chr1_1:51718379-51718398 | None:intergenic | 25.0% |
| !!! | AAAGTTACAAGCTTTGTTAA+TGG | - | chr1_1:51718543-51718562 | Msa0027410:intron | 25.0% |
| !!! | AAGTTACAAGCTTTGTTAAT+GGG | - | chr1_1:51718544-51718563 | Msa0027410:intron | 25.0% |
| !!! | GATTTGGTTTTTTTAGTTTG+GGG | + | chr1_1:51718603-51718622 | None:intergenic | 25.0% |
| !!! | GGATTTGGTTTTTTTAGTTT+GGG | + | chr1_1:51718604-51718623 | None:intergenic | 25.0% |
| !!! | TGGATTTGGTTTTTTTAGTT+TGG | + | chr1_1:51718605-51718624 | None:intergenic | 25.0% |
| ! | AAAAAACCAAATCCAATCTA+AGG | - | chr1_1:51718610-51718629 | Msa0027410:intron | 25.0% |
| ! | AAAAAACCTTAGATTGGATT+TGG | + | chr1_1:51718619-51718638 | None:intergenic | 25.0% |
| !! | CAATTGGTTATTGAGATTTT+GGG | - | chr1_1:51718653-51718672 | Msa0027410:intron | 25.0% |
| ! | AATATTTACTTTCCTATGGT+GGG | - | chr1_1:51719015-51719034 | Msa0027410:CDS | 25.0% |
| ! | TGATTCTGATTAGGAAAATA+TGG | - | chr1_1:51719120-51719139 | Msa0027410:five_prime_UTR | 25.0% |
| ! | TTAGGAAAATATGGAAGTTA+AGG | - | chr1_1:51719129-51719148 | Msa0027410:five_prime_UTR | 25.0% |
| TTCCAAATTCGAAATCACAA+TGG | - | chr1_1:51713789-51713808 | Msa0027410:intron | 30.0% | |
| ! | ATTCATAATTTTGTGTCGAG+TGG | - | chr1_1:51714234-51714253 | Msa0027410:intron | 30.0% |
| GATTACGCACTGTAATTTAT+TGG | - | chr1_1:51714322-51714341 | Msa0027410:intron | 30.0% | |
| CAGCTTAATTAAGCATTCTA+GGG | - | chr1_1:51714377-51714396 | Msa0027410:intron | 30.0% | |
| AAATAATAAGCCAATCCAGA+CGG | - | chr1_1:51714578-51714597 | Msa0027410:intron | 30.0% | |
| TAGAATTAGGACTTGTATGT+TGG | - | chr1_1:51714883-51714902 | Msa0027410:intron | 30.0% | |
| AGAATTAGGACTTGTATGTT+GGG | - | chr1_1:51714884-51714903 | Msa0027410:intron | 30.0% | |
| ! | TTTAAGCTCTGATAATACGT+TGG | - | chr1_1:51714953-51714972 | Msa0027410:intron | 30.0% |
| ! | TTAAGCTCTGATAATACGTT+GGG | - | chr1_1:51714954-51714973 | Msa0027410:intron | 30.0% |
| CATTAAGAAGGAATAGAAAC+AGG | + | chr1_1:51715047-51715066 | None:intergenic | 30.0% | |
| !! | CTGTTTCTATTCCTTCTTAA+TGG | - | chr1_1:51715045-51715064 | Msa0027410:three_prime_UTR | 30.0% |
| AGTAAAAACTCCCATTAAGA+AGG | + | chr1_1:51715059-51715078 | None:intergenic | 30.0% | |
| CTGATATAATCTTAGTTTCG+AGG | - | chr1_1:51715077-51715096 | Msa0027410:three_prime_UTR | 30.0% | |
| ATAATCTTAGTTTCGAGGAT+AGG | - | chr1_1:51715082-51715101 | Msa0027410:three_prime_UTR | 30.0% | |
| AGTATAACTCTTCCAAAAGT+AGG | - | chr1_1:51715160-51715179 | Msa0027410:three_prime_UTR | 30.0% | |
| GTATAACTCTTCCAAAAGTA+GGG | - | chr1_1:51715161-51715180 | Msa0027410:three_prime_UTR | 30.0% | |
| ACACATGTACAAAACATAGT+GGG | - | chr1_1:51715441-51715460 | Msa0027410:CDS | 30.0% | |
| ! | AGCTTGATGATCATAAAACA+CGG | - | chr1_1:51715472-51715491 | Msa0027410:CDS | 30.0% |
| AAAGGAATTGATCAAAGCAA+AGG | + | chr1_1:51715655-51715674 | None:intergenic | 30.0% | |
| TTAGATAGCCAAACATTACA+TGG | + | chr1_1:51715951-51715970 | None:intergenic | 30.0% | |
| !! | CTTAGTTTTTCTATGCATCA+GGG | + | chr1_1:51715991-51716010 | None:intergenic | 30.0% |
| !! | TCTTAGTTTTTCTATGCATC+AGG | + | chr1_1:51715992-51716011 | None:intergenic | 30.0% |
| ! | TTCATCCTTATAAGGTATCA+TGG | - | chr1_1:51716155-51716174 | Msa0027410:intron | 30.0% |
| TCAATCCATGATACCTTATA+AGG | + | chr1_1:51716163-51716182 | None:intergenic | 30.0% | |
| !! | TCTTTTATTTCGAGAAAAGG+TGG | + | chr1_1:51716283-51716302 | None:intergenic | 30.0% |
| !! | GGATCTTTTATTTCGAGAAA+AGG | + | chr1_1:51716286-51716305 | None:intergenic | 30.0% |
| ATAGCACAATATTTGGCTAT+TGG | + | chr1_1:51716501-51716520 | None:intergenic | 30.0% | |
| ! | ATGCAGTAAATTGAAGTGTT+TGG | - | chr1_1:51716619-51716638 | Msa0027410:intron | 30.0% |
| !!! | AAAAAGAGCTTTTAGCTTGA+TGG | - | chr1_1:51716697-51716716 | Msa0027410:CDS | 30.0% |
| ATTTCAACAAGAATTACTCC+TGG | - | chr1_1:51716767-51716786 | Msa0027410:CDS | 30.0% | |
| ! | TGTTACTCGAATGGATTTAT+TGG | - | chr1_1:51716981-51717000 | Msa0027410:intron | 30.0% |
| GGATTTATTGGAATTCTTCA+AGG | - | chr1_1:51716993-51717012 | Msa0027410:intron | 30.0% | |
| AAATTTGAGAAAACTGCAAC+GGG | - | chr1_1:51717076-51717095 | Msa0027410:intron | 30.0% | |
| ! | TATGCAACTCACATTTTTGA+TGG | - | chr1_1:51717364-51717383 | Msa0027410:intron | 30.0% |
| CATTTGGCATATATACAAGA+AGG | - | chr1_1:51717406-51717425 | Msa0027410:intron | 30.0% | |
| AGAATACATCTAATGCTCAA+GGG | - | chr1_1:51717551-51717570 | Msa0027410:intron | 30.0% | |
| GATTACATAGCCATAAACAA+GGG | + | chr1_1:51717795-51717814 | None:intergenic | 30.0% | |
| CAATGTACAATAAAATCACG+TGG | - | chr1_1:51717938-51717957 | Msa0027410:intron | 30.0% | |
| ATGTACAATAAAATCACGTG+GGG | - | chr1_1:51717940-51717959 | Msa0027410:intron | 30.0% | |
| !!! | TTTTTTCCCTTGGTTACAAA+CGG | - | chr1_1:51718003-51718022 | Msa0027410:intron | 30.0% |
| ATAGACTATGATAACAATGG+TGG | + | chr1_1:51718099-51718118 | None:intergenic | 30.0% | |
| CAGATAGACTATGATAACAA+TGG | + | chr1_1:51718102-51718121 | None:intergenic | 30.0% | |
| GAAGATGAATAGTTGTTTGA+AGG | + | chr1_1:51718215-51718234 | None:intergenic | 30.0% | |
| !! | TTTAACAATGAAGCTTGTTG+TGG | + | chr1_1:51718354-51718373 | None:intergenic | 30.0% |
| !! | AGTTACAAGCTTTGTTAATG+GGG | - | chr1_1:51718545-51718564 | Msa0027410:intron | 30.0% |
| ! | GCAATTGGTTATTGAGATTT+TGG | - | chr1_1:51718652-51718671 | Msa0027410:intron | 30.0% |
| GATAAAAAATTCACAGATCC+AGG | + | chr1_1:51718708-51718727 | None:intergenic | 30.0% | |
| TACTCGTGAAACAAAAAACA+TGG | + | chr1_1:51718885-51718904 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTGTTTCACGAGT+AGG | - | chr1_1:51718884-51718903 | Msa0027410:CDS | 30.0% |
| GGTCAATATTTACTTTCCTA+TGG | - | chr1_1:51719011-51719030 | Msa0027410:CDS | 30.0% | |
| CAATATTTACTTTCCTATGG+TGG | - | chr1_1:51719014-51719033 | Msa0027410:CDS | 30.0% | |
| TGTAAACTAGAAAGCTTGTA+AGG | - | chr1_1:51719161-51719180 | Msa0027410:five_prime_UTR | 30.0% | |
| AACGAACACGTTAGTGTAAA+TGG | + | chr1_1:51713668-51713687 | None:intergenic | 35.0% | |
| TGCCATTGTGATTTCGAATT+TGG | + | chr1_1:51713794-51713813 | None:intergenic | 35.0% | |
| AACTACGTTGTTGAAGATTC+TGG | - | chr1_1:51713987-51714006 | Msa0027410:intron | 35.0% | |
| TAGTGGTGATCTTGCTTATT+TGG | - | chr1_1:51714089-51714108 | Msa0027410:intron | 35.0% | |
| AGTGGTGATCTTGCTTATTT+GGG | - | chr1_1:51714090-51714109 | Msa0027410:intron | 35.0% | |
| GAGTGGTTAAAATGAAATGC+TGG | - | chr1_1:51714251-51714270 | Msa0027410:intron | 35.0% | |
| ! | GTAATTTATTGGTGACTGTG+AGG | - | chr1_1:51714333-51714352 | Msa0027410:intron | 35.0% |
| CCTAGAATGCTTAATTAAGC+TGG | + | chr1_1:51714379-51714398 | None:intergenic | 35.0% | |
| CCAGCTTAATTAAGCATTCT+AGG | - | chr1_1:51714376-51714395 | Msa0027410:intron | 35.0% | |
| TAACTACCTTGACAAGCTTA+TGG | - | chr1_1:51714506-51714525 | Msa0027410:intron | 35.0% | |
| ! | ATTTTGCCATAAGCTTGTCA+AGG | + | chr1_1:51714515-51714534 | None:intergenic | 35.0% |
| AATAATAAGCCAATCCAGAC+GGG | - | chr1_1:51714579-51714598 | Msa0027410:intron | 35.0% | |
| ! | AACCATAAGTAGCTCTATCT+TGG | - | chr1_1:51714643-51714662 | Msa0027410:intron | 35.0% |
| TTCCAAGATAGAGCTACTTA+TGG | + | chr1_1:51714648-51714667 | None:intergenic | 35.0% | |
| AGCTCTATCTTGGAAATTGA+TGG | - | chr1_1:51714653-51714672 | Msa0027410:intron | 35.0% | |
| AAATACGTATAGAGTCTGCT+TGG | + | chr1_1:51714844-51714863 | None:intergenic | 35.0% | |
| AAGCAGACTCTATACGTATT+TGG | - | chr1_1:51714843-51714862 | Msa0027410:intron | 35.0% | |
| !! | AATTCTAAAGTGTGCAAGCA+TGG | + | chr1_1:51714870-51714889 | None:intergenic | 35.0% |
| !! | TGCTTGCACACTTTAGAATT+AGG | - | chr1_1:51714870-51714889 | Msa0027410:intron | 35.0% |
| ! | TTTGAAAACCACCCTACTTT+TGG | + | chr1_1:51715175-51715194 | None:intergenic | 35.0% |
| !!! | TTATGTTGCCCTCACTTTTT+AGG | - | chr1_1:51715259-51715278 | Msa0027410:CDS | 35.0% |
| TCTGGCTAAGAGAACATAAA+GGG | + | chr1_1:51715372-51715391 | None:intergenic | 35.0% | |
| ! | TTCTGGCTAAGAGAACATAA+AGG | + | chr1_1:51715373-51715392 | None:intergenic | 35.0% |
| ! | CACTATGTTTTGTACATGTG+TGG | + | chr1_1:51715442-51715461 | None:intergenic | 35.0% |
| CACACATGTACAAAACATAG+TGG | - | chr1_1:51715440-51715459 | Msa0027410:CDS | 35.0% | |
| ! | TTGATGATCATAAAACACGG+TGG | - | chr1_1:51715475-51715494 | Msa0027410:CDS | 35.0% |
| GAAAGCTACTAGAGATCTAA+GGG | + | chr1_1:51715512-51715531 | None:intergenic | 35.0% | |
| AGAAAGCTACTAGAGATCTA+AGG | + | chr1_1:51715513-51715532 | None:intergenic | 35.0% | |
| ! | TAGCTGAGATTTTGTGTTTG+TGG | - | chr1_1:51715575-51715594 | Msa0027410:intron | 35.0% |
| GTTGAACATATGATATTCGG+TGG | - | chr1_1:51715735-51715754 | Msa0027410:intron | 35.0% | |
| ! | AACATATGATATTCGGTGGT+GGG | - | chr1_1:51715739-51715758 | Msa0027410:intron | 35.0% |
| AAACTAGTCATACCATAGCA+TGG | - | chr1_1:51715835-51715854 | Msa0027410:CDS | 35.0% | |
| CCTTAATAGGGTTTCATTGA+AGG | + | chr1_1:51715864-51715883 | None:intergenic | 35.0% | |
| CCTTCAATGAAACCCTATTA+AGG | - | chr1_1:51715861-51715880 | Msa0027410:CDS | 35.0% | |
| ! | ATCATGGATTGAATAGCCTA+AGG | - | chr1_1:51716171-51716190 | Msa0027410:intron | 35.0% |
| ATGTGGTAGTTATGTTGTTG+TGG | - | chr1_1:51716201-51716220 | Msa0027410:intron | 35.0% | |
| AGCATACAAATATACAGAGC+TGG | + | chr1_1:51717040-51717059 | None:intergenic | 35.0% | |
| ! | TATCATCCTGTTTTGCATTG+GGG | + | chr1_1:51717106-51717125 | None:intergenic | 35.0% |
| ! | CTATCATCCTGTTTTGCATT+GGG | + | chr1_1:51717107-51717126 | None:intergenic | 35.0% |
| ! | ACTATCATCCTGTTTTGCAT+TGG | + | chr1_1:51717108-51717127 | None:intergenic | 35.0% |
| AGTTGATCCTAGTTGGAAAT+AGG | - | chr1_1:51717125-51717144 | Msa0027410:CDS | 35.0% | |
| GTTGATCCTAGTTGGAAATA+GGG | - | chr1_1:51717126-51717145 | Msa0027410:CDS | 35.0% | |
| ! | CTTTTACCCTATTTCCAACT+AGG | + | chr1_1:51717135-51717154 | None:intergenic | 35.0% |
| TTTAGTTAGGATTCATGAGC+AGG | + | chr1_1:51717218-51717237 | None:intergenic | 35.0% | |
| GTAGCTTCTCTCTACAAAAA+AGG | + | chr1_1:51717337-51717356 | None:intergenic | 35.0% | |
| !! | AACTCACATTTTTGATGGAC+TGG | - | chr1_1:51717369-51717388 | Msa0027410:intron | 35.0% |
| ATATACAAGAAGGCGAATTG+AGG | - | chr1_1:51717416-51717435 | Msa0027410:intron | 35.0% | |
| !! | TTTCAAGCTTTGTTTCAGCA+CGG | + | chr1_1:51717516-51717535 | None:intergenic | 35.0% |
| CTTGAGCATTAGATGTATTC+TGG | + | chr1_1:51717552-51717571 | None:intergenic | 35.0% | |
| CAGAATACATCTAATGCTCA+AGG | - | chr1_1:51717550-51717569 | Msa0027410:intron | 35.0% | |
| ! | CTGTAATCTTCCCTTGTTTA+TGG | - | chr1_1:51717782-51717801 | Msa0027410:intron | 35.0% |
| GGATTACATAGCCATAAACA+AGG | + | chr1_1:51717796-51717815 | None:intergenic | 35.0% | |
| TGTTAAATTGGAGCTTGAAG+GGG | + | chr1_1:51717817-51717836 | None:intergenic | 35.0% | |
| CTGTTAAATTGGAGCTTGAA+GGG | + | chr1_1:51717818-51717837 | None:intergenic | 35.0% | |
| ! | TTTTTCCCTTGGTTACAAAC+GGG | - | chr1_1:51718004-51718023 | Msa0027410:intron | 35.0% |
| GGTGGTACTACTTAATCAAA+TGG | + | chr1_1:51718081-51718100 | None:intergenic | 35.0% | |
| CTCAGTTTATTATGTCACGA+TGG | - | chr1_1:51718154-51718173 | Msa0027410:intron | 35.0% | |
| AACTTGTAGGAAGAGAAGAT+TGG | + | chr1_1:51718281-51718300 | None:intergenic | 35.0% | |
| ! | TGTTCTAGATCTCAACTTGT+AGG | + | chr1_1:51718294-51718313 | None:intergenic | 35.0% |
| AACAAGAACAGATTCGAATC+TGG | - | chr1_1:51718321-51718340 | Msa0027410:intron | 35.0% | |
| AGGAAGCTATCAAAGACAAA+AGG | + | chr1_1:51718843-51718862 | None:intergenic | 35.0% | |
| AACTAACCTGTGAATAGCTT+TGG | - | chr1_1:51719095-51719114 | Msa0027410:five_prime_UTR | 35.0% | |
| ACTAACCTGTGAATAGCTTT+GGG | - | chr1_1:51719096-51719115 | Msa0027410:five_prime_UTR | 35.0% | |
| AAGATGAATGAGATGGAACC+TGG | + | chr1_1:51713730-51713749 | None:intergenic | 40.0% | |
| GATAATGAAGATTCCTCGAG+CGG | - | chr1_1:51713832-51713851 | Msa0027410:intron | 40.0% | |
| TGTAGGAGAATTGCATTCCT+TGG | + | chr1_1:51713867-51713886 | None:intergenic | 40.0% | |
| ! | TTGTTGTTGGATGTCGTTGT+AGG | + | chr1_1:51713884-51713903 | None:intergenic | 40.0% |
| AAGCTGCGTATCATGAAAAG+CGG | + | chr1_1:51714064-51714083 | None:intergenic | 40.0% | |
| TTGCTTATTTGGGTGGATCT+TGG | - | chr1_1:51714100-51714119 | Msa0027410:intron | 40.0% | |
| GGATCTTGGAGTAAAAACGT+TGG | - | chr1_1:51714114-51714133 | Msa0027410:intron | 40.0% | |
| TGTCGTTAGGAAATAGGGTT+AGG | - | chr1_1:51714179-51714198 | Msa0027410:intron | 40.0% | |
| !!! | GGTTTCGCTTTTTTCGCATT+CGG | - | chr1_1:51714200-51714219 | Msa0027410:intron | 40.0% |
| TTCCTAGCATAAGCACTAGT+GGG | + | chr1_1:51714743-51714762 | None:intergenic | 40.0% | |
| TTTCCTAGCATAAGCACTAG+TGG | + | chr1_1:51714744-51714763 | None:intergenic | 40.0% | |
| AAACCTCATACACTAAGTGC+TGG | + | chr1_1:51714935-51714954 | None:intergenic | 40.0% | |
| TCTGATAATACGTTGGGACT+TGG | - | chr1_1:51714960-51714979 | Msa0027410:intron | 40.0% | |
| CTGATAATACGTTGGGACTT+GGG | - | chr1_1:51714961-51714980 | Msa0027410:intron | 40.0% | |
| AGGAATAGAAACAGGGTCAA+GGG | + | chr1_1:51715039-51715058 | None:intergenic | 40.0% | |
| AAGGAATAGAAACAGGGTCA+AGG | + | chr1_1:51715040-51715059 | None:intergenic | 40.0% | |
| TAACTCTTCCAAAAGTAGGG+TGG | - | chr1_1:51715164-51715183 | Msa0027410:three_prime_UTR | 40.0% | |
| ! | TAATGTCGTTGCTGTTATCC+AGG | - | chr1_1:51715683-51715702 | Msa0027410:intron | 40.0% |
| ! | AATGTCGTTGCTGTTATCCA+GGG | - | chr1_1:51715684-51715703 | Msa0027410:intron | 40.0% |
| ! | GAACATATGATATTCGGTGG+TGG | - | chr1_1:51715738-51715757 | Msa0027410:intron | 40.0% |
| ! | TATATACAAGCGTTGCATGC+AGG | - | chr1_1:51715923-51715942 | Msa0027410:intron | 40.0% |
| TGCAGGTTCCATGTAATGTT+TGG | - | chr1_1:51715940-51715959 | Msa0027410:intron | 40.0% | |
| !! | CTTCTGCTTTTGACAGTTGA+AGG | - | chr1_1:51716016-51716035 | Msa0027410:intron | 40.0% |
| TGCTTGATATAGATCTGCAG+TGG | - | chr1_1:51716074-51716093 | Msa0027410:intron | 40.0% | |
| ! | GAATGCATAAGGTATCCGAT+GGG | - | chr1_1:51716098-51716117 | Msa0027410:intron | 40.0% |
| GGGTCTTCTTCATCCTTATA+AGG | - | chr1_1:51716147-51716166 | Msa0027410:intron | 40.0% | |
| TAGCCTAAGGAATTTGCATG+TGG | - | chr1_1:51716184-51716203 | Msa0027410:intron | 40.0% | |
| CTACCACATGCAAATTCCTT+AGG | + | chr1_1:51716190-51716209 | None:intergenic | 40.0% | |
| ATGTTGTTGTGGACAATGTC+AGG | - | chr1_1:51716212-51716231 | Msa0027410:intron | 40.0% | |
| TGTTGTTGTGGACAATGTCA+GGG | - | chr1_1:51716213-51716232 | Msa0027410:intron | 40.0% | |
| ATTGAACATCTGCTTACTCC+AGG | + | chr1_1:51716788-51716807 | None:intergenic | 40.0% | |
| ACTGTAGTGTAACCCTTGAT+TGG | - | chr1_1:51716912-51716931 | Msa0027410:intron | 40.0% | |
| TAACCCTTGATTGGCATTTC+AGG | - | chr1_1:51716921-51716940 | Msa0027410:intron | 40.0% | |
| GAACCTGAAATGCCAATCAA+GGG | + | chr1_1:51716927-51716946 | None:intergenic | 40.0% | |
| AGAACCTGAAATGCCAATCA+AGG | + | chr1_1:51716928-51716947 | None:intergenic | 40.0% | |
| GGATGATAGTTGATCCTAGT+TGG | - | chr1_1:51717118-51717137 | Msa0027410:CDS | 40.0% | |
| ! | TAAGCCTTTTTCCACCTAGT+GGG | - | chr1_1:51717162-51717181 | Msa0027410:intron | 40.0% |
| TTCATATAACCAACCCCACT+AGG | + | chr1_1:51717179-51717198 | None:intergenic | 40.0% | |
| TAGGATTCATGAGCAGGTTA+TGG | + | chr1_1:51717212-51717231 | None:intergenic | 40.0% | |
| !!! | TTTTTGATGGACTGGAGACA+TGG | - | chr1_1:51717377-51717396 | Msa0027410:intron | 40.0% |
| !!! | TTTTGATGGACTGGAGACAT+GGG | - | chr1_1:51717378-51717397 | Msa0027410:intron | 40.0% |
| GCATTAGATGTATTCTGGAC+AGG | + | chr1_1:51717547-51717566 | None:intergenic | 40.0% | |
| TGTCTGGATGATGAAGAGAA+CGG | + | chr1_1:51717595-51717614 | None:intergenic | 40.0% | |
| GCTGTTAAATTGGAGCTTGA+AGG | + | chr1_1:51717819-51717838 | None:intergenic | 40.0% | |
| GTTAGAAAAGGACTTTCCCA+TGG | + | chr1_1:51718059-51718078 | None:intergenic | 40.0% | |
| TGAAGAGAAACACATGTCTG+TGG | + | chr1_1:51718450-51718469 | None:intergenic | 40.0% | |
| GTTTGGGGAATTGAGTTCAA+GGG | + | chr1_1:51718588-51718607 | None:intergenic | 40.0% | |
| AGTTTGGGGAATTGAGTTCA+AGG | + | chr1_1:51718589-51718608 | None:intergenic | 40.0% | |
| ! | TGGTGTTAAGCAAGCATAAG+AGG | - | chr1_1:51718745-51718764 | Msa0027410:CDS | 40.0% |
| TAAGCAAGCATAAGAGGTTG+TGG | - | chr1_1:51718751-51718770 | Msa0027410:CDS | 40.0% | |
| ! | CAGCTCTGATGTGTTTAAAC+AGG | - | chr1_1:51718776-51718795 | Msa0027410:CDS | 40.0% |
| TTAAACAGGAAGCAGACTCT+TGG | - | chr1_1:51718790-51718809 | Msa0027410:CDS | 40.0% | |
| ! | GTTCTTTTCTCAGAAGCTCT+AGG | + | chr1_1:51718863-51718882 | None:intergenic | 40.0% |
| !! | TTTTGTTTCACGAGTAGGAG+AGG | - | chr1_1:51718889-51718908 | Msa0027410:CDS | 40.0% |
| AGAAAGAGAGTTGAGACAGT+TGG | - | chr1_1:51718913-51718932 | Msa0027410:CDS | 40.0% | |
| GGTGAGTGTGGAAAAAGATT+TGG | - | chr1_1:51718944-51718963 | Msa0027410:CDS | 40.0% | |
| GTGGCATTTAGTATGGGAAA+GGG | + | chr1_1:51719050-51719069 | None:intergenic | 40.0% | |
| ! | CTTTTTATTGTTCGTGCTGG+TGG | + | chr1_1:51719069-51719088 | None:intergenic | 40.0% |
| CACCAGCACGAACAATAAAA+AGG | - | chr1_1:51719067-51719086 | Msa0027410:five_prime_UTR | 40.0% | |
| ! | AGCCTTTTTATTGTTCGTGC+TGG | + | chr1_1:51719072-51719091 | None:intergenic | 40.0% |
| ! | CTAACCTGTGAATAGCTTTG+GGG | - | chr1_1:51719097-51719116 | Msa0027410:five_prime_UTR | 40.0% |
| GGAGACGAAGATGAATGAGA+TGG | + | chr1_1:51713737-51713756 | None:intergenic | 45.0% | |
| AGGTTGAAATCGACGAAGAG+CGG | + | chr1_1:51713913-51713932 | None:intergenic | 45.0% | |
| ACGTTGTTGAAGATTCTGGC+TGG | - | chr1_1:51713991-51714010 | Msa0027410:intron | 45.0% | |
| ! | CGTTGTTGAAGATTCTGGCT+GGG | - | chr1_1:51713992-51714011 | Msa0027410:intron | 45.0% |
| ! | GATACGCAGCTTGTTTGTAG+TGG | - | chr1_1:51714072-51714091 | Msa0027410:intron | 45.0% |
| GGTGATCTTGCTTATTTGGG+TGG | - | chr1_1:51714093-51714112 | Msa0027410:intron | 45.0% | |
| !! | TTAAGCATTCTAGGGCCGTT+TGG | - | chr1_1:51714385-51714404 | Msa0027410:intron | 45.0% |
| TATACTACTAATGGCCCGTC+TGG | + | chr1_1:51714596-51714615 | None:intergenic | 45.0% | |
| !! | CTCATACACTAAGTGCTGGT+TGG | + | chr1_1:51714931-51714950 | None:intergenic | 45.0% |
| CAACCAGCACTTAGTGTATG+AGG | - | chr1_1:51714929-51714948 | Msa0027410:intron | 45.0% | |
| CATTGAAGGACTCCATGCTA+TGG | + | chr1_1:51715850-51715869 | None:intergenic | 45.0% | |
| !! | TTGAAGGTGTTGATCCTGAC+AGG | - | chr1_1:51716032-51716051 | Msa0027410:intron | 45.0% |
| ATCAACTTGTCTCTCCTGTC+AGG | + | chr1_1:51716049-51716068 | None:intergenic | 45.0% | |
| ! | CGAATGCATAAGGTATCCGA+TGG | - | chr1_1:51716097-51716116 | Msa0027410:intron | 45.0% |
| CGTCGAGTGCAAATCTGTTT+GGG | - | chr1_1:51716127-51716146 | Msa0027410:intron | 45.0% | |
| TATTTCGAGAAAAGGTGGCC+AGG | + | chr1_1:51716278-51716297 | None:intergenic | 45.0% | |
| CCATTCGAGTAACAACATCC+AGG | + | chr1_1:51716975-51716994 | None:intergenic | 45.0% | |
| CCTGGATGTTGTTACTCGAA+TGG | - | chr1_1:51716972-51716991 | Msa0027410:intron | 45.0% | |
| CTTCAAGGAAGAATGTGAGC+AGG | - | chr1_1:51717008-51717027 | Msa0027410:intron | 45.0% | |
| ! | CTAAGCCTTTTTCCACCTAG+TGG | - | chr1_1:51717161-51717180 | Msa0027410:intron | 45.0% |
| ! | AAGCCTTTTTCCACCTAGTG+GGG | - | chr1_1:51717163-51717182 | Msa0027410:intron | 45.0% |
| ATATAACCAACCCCACTAGG+TGG | + | chr1_1:51717176-51717195 | None:intergenic | 45.0% | |
| CTCTTCATCATCCAGACACA+TGG | - | chr1_1:51717597-51717616 | Msa0027410:intron | 45.0% | |
| TCGATAGTATGCCATGTGTC+TGG | + | chr1_1:51717611-51717630 | None:intergenic | 45.0% | |
| ACAATAAAATCACGTGGGGC+TGG | - | chr1_1:51717944-51717963 | Msa0027410:intron | 45.0% | |
| CTCTTCCCGTTTGTAACCAA+GGG | + | chr1_1:51718012-51718031 | None:intergenic | 45.0% | |
| TCTCTTCCCGTTTGTAACCA+AGG | + | chr1_1:51718013-51718032 | None:intergenic | 45.0% | |
| CGGGAAGAGAAAGTAGACAA+AGG | - | chr1_1:51718023-51718042 | Msa0027410:intron | 45.0% | |
| ACAAAGGAAAGCAAGCACCA+TGG | - | chr1_1:51718039-51718058 | Msa0027410:intron | 45.0% | |
| CAAAGGAAAGCAAGCACCAT+GGG | - | chr1_1:51718040-51718059 | Msa0027410:intron | 45.0% | |
| AAGAGAGTTGAGACAGTTGG+TGG | - | chr1_1:51718916-51718935 | Msa0027410:CDS | 45.0% | |
| !! | TTGAGACAGTTGGTGGTGAT+TGG | - | chr1_1:51718923-51718942 | Msa0027410:CDS | 45.0% |
| GGTGGCATTTAGTATGGGAA+AGG | + | chr1_1:51719051-51719070 | None:intergenic | 45.0% | |
| ! | GTGCTGGTGGCATTTAGTAT+GGG | + | chr1_1:51719056-51719075 | None:intergenic | 45.0% |
| ATCACCCCAAAGCTATTCAC+AGG | + | chr1_1:51719104-51719123 | None:intergenic | 45.0% | |
| !! | GCTTTGGGGTGATTCTGATT+AGG | - | chr1_1:51719111-51719130 | Msa0027410:five_prime_UTR | 45.0% |
| ! | AGAGCGGTGGTTGTTGTTGT+TGG | + | chr1_1:51713897-51713916 | None:intergenic | 50.0% |
| TTGAAATCGACGAAGAGCGG+TGG | + | chr1_1:51713910-51713929 | None:intergenic | 50.0% | |
| TTCAACCTCCACGTTTCTCC+CGG | - | chr1_1:51713925-51713944 | Msa0027410:intron | 50.0% | |
| ! | GATTCTGGCTGGGAAGCATA+TGG | - | chr1_1:51714002-51714021 | Msa0027410:intron | 50.0% |
| TACTAATGGCCCGTCTGGAT+TGG | + | chr1_1:51714591-51714610 | None:intergenic | 50.0% | |
| GTCCCACTAGTGCTTATGCT+AGG | - | chr1_1:51714738-51714757 | Msa0027410:intron | 50.0% | |
| AGACAAGGTCTTCTGCAGCA+TGG | - | chr1_1:51715201-51715220 | Msa0027410:exon | 50.0% | |
| GACAAGGTCTTCTGCAGCAT+GGG | - | chr1_1:51715202-51715221 | Msa0027410:exon | 50.0% | |
| CTGCAGCATGGGTGAATGTT+AGG | - | chr1_1:51715213-51715232 | Msa0027410:exon | 50.0% | |
| TAAAACACGGTGGCCCACTT+CGG | - | chr1_1:51715485-51715504 | Msa0027410:CDS | 50.0% | |
| GAGATCTAAGGGTCCGAAGT+GGG | + | chr1_1:51715501-51715520 | None:intergenic | 50.0% | |
| AGAGATCTAAGGGTCCGAAG+TGG | + | chr1_1:51715502-51715521 | None:intergenic | 50.0% | |
| ! | AGGAGTCAGGGTGCAGTTTT+AGG | + | chr1_1:51715615-51715634 | None:intergenic | 50.0% |
| GATCAAAGCAAAGGCAGCAC+AGG | + | chr1_1:51715646-51715665 | None:intergenic | 50.0% | |
| TCTGCAGTGGCGAATGCATA+AGG | - | chr1_1:51716087-51716106 | Msa0027410:intron | 50.0% | |
| ! | ATAAGGTATCCGATGGGCAG+CGG | - | chr1_1:51716104-51716123 | Msa0027410:intron | 50.0% |
| GCGTCGAGTGCAAATCTGTT+TGG | - | chr1_1:51716126-51716145 | Msa0027410:intron | 50.0% | |
| !! | GGCATTTCAGGTTCTCTTGC+TGG | - | chr1_1:51716933-51716952 | Msa0027410:intron | 50.0% |
| TCAGGTTCTCTTGCTGGATG+AGG | - | chr1_1:51716939-51716958 | Msa0027410:intron | 50.0% | |
| GGATGAGGTAACAGTTGACC+TGG | - | chr1_1:51716954-51716973 | Msa0027410:intron | 50.0% | |
| GGATGTCCCCAATGCAAAAC+AGG | - | chr1_1:51717097-51717116 | Msa0027410:CDS | 50.0% | |
| CAACCCCACTAGGTGGAAAA+AGG | + | chr1_1:51717169-51717188 | None:intergenic | 50.0% | |
| ! | CTTTTTCCACCTAGTGGGGT+TGG | - | chr1_1:51717167-51717186 | Msa0027410:intron | 50.0% |
| GGAGACATGGGCAACTCATT+TGG | - | chr1_1:51717390-51717409 | Msa0027410:intron | 50.0% | |
| !! | TTGGTGGTGATTGGTGAGTG+TGG | - | chr1_1:51718932-51718951 | Msa0027410:CDS | 50.0% |
| GGGAAGTAGTTTCCCACCAT+AGG | + | chr1_1:51719030-51719049 | None:intergenic | 50.0% | |
| ! | CGTGCTGGTGGCATTTAGTA+TGG | + | chr1_1:51719057-51719076 | None:intergenic | 50.0% |
| TTGGACTCTGATTCCGCTCG+AGG | + | chr1_1:51713848-51713867 | None:intergenic | 55.0% | |
| TCGAGCGGAATCAGAGTCCA+AGG | - | chr1_1:51713847-51713866 | Msa0027410:intron | 55.0% | |
| ATCTGGATCCGGGAGAAACG+TGG | + | chr1_1:51713936-51713955 | None:intergenic | 55.0% | |
| ! | CTGGCTGGGAAGCATATGGT+TGG | - | chr1_1:51714006-51714025 | Msa0027410:intron | 55.0% |
| ! | GCTGGGAAGCATATGGTTGG+AGG | - | chr1_1:51714009-51714028 | Msa0027410:intron | 55.0% |
| CAGGTTAGCAGGAGGAGTCA+GGG | + | chr1_1:51715627-51715646 | None:intergenic | 55.0% | |
| ACAGGTTAGCAGGAGGAGTC+AGG | + | chr1_1:51715628-51715647 | None:intergenic | 55.0% | |
| CAAAGGCAGCACAGGTTAGC+AGG | + | chr1_1:51715638-51715657 | None:intergenic | 55.0% | |
| CAGGGAGACATTCCACTGCA+GGG | - | chr1_1:51715702-51715721 | Msa0027410:intron | 55.0% | |
| ACAGAGAAGTCTCCCTGCAG+TGG | + | chr1_1:51715717-51715736 | None:intergenic | 55.0% | |
| AGGACTCGACAACAGACAGC+AGG | + | chr1_1:51717489-51717508 | None:intergenic | 55.0% | |
| TGCTGTCTGTTGTCGAGTCC+TGG | - | chr1_1:51717488-51717507 | Msa0027410:intron | 55.0% | |
| ! | CTTTGTTTCAGCACGGAGCC+AGG | + | chr1_1:51717509-51717528 | None:intergenic | 55.0% |
| !! | AAATCACGTGGGGCTGGCTT+AGG | - | chr1_1:51717950-51717969 | Msa0027410:intron | 55.0% |
| TGGATCCGGGAGAAACGTGG+AGG | + | chr1_1:51713933-51713952 | None:intergenic | 60.0% | |
| !! | ACGAGGAGGCATCTGGATCC+GGG | + | chr1_1:51713946-51713965 | None:intergenic | 60.0% |
| !! | GACGAGGAGGCATCTGGATC+CGG | + | chr1_1:51713947-51713966 | None:intergenic | 60.0% |
| GGATCCAGATGCCTCCTCGT+CGG | - | chr1_1:51713946-51713965 | Msa0027410:intron | 60.0% | |
| !! | TGCCTCCTCGTCGGTGCTAA+CGG | - | chr1_1:51713955-51713974 | Msa0027410:intron | 60.0% |
| !! | ATCCGTTAGCACCGACGAGG+AGG | + | chr1_1:51713960-51713979 | None:intergenic | 60.0% |
| !! | CAGATCCGTTAGCACCGACG+AGG | + | chr1_1:51713963-51713982 | None:intergenic | 60.0% |
| !! | CTCGTCGGTGCTAACGGATC+TGG | - | chr1_1:51713961-51713980 | Msa0027410:intron | 60.0% |
| AGGCAGCACAGGTTAGCAGG+AGG | + | chr1_1:51715635-51715654 | None:intergenic | 60.0% | |
| CCTGCAGTGGAATGTCTCCC+TGG | + | chr1_1:51715704-51715723 | None:intergenic | 60.0% | |
| CCAGGGAGACATTCCACTGC+AGG | - | chr1_1:51715701-51715720 | Msa0027410:intron | 60.0% | |
| !! | AGCACCGACGAGGAGGCATC+TGG | + | chr1_1:51713953-51713972 | None:intergenic | 65.0% |
| CACTCGACGCCGCTGCCCAT+CGG | + | chr1_1:51716116-51716135 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51713642 | 51719208 | 51713642 | ID=Msa0027410;Name=Msa0027410 |
| chr1_1 | mRNA | 51713642 | 51719208 | 51713642 | ID=Msa0027410-mRNA-1;Parent=Msa0027410;Name=Msa0027410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|0.8|0.66|6|340|299 |
| chr1_1 | exon | 51713642 | 51713777 | 51713642 | ID=Msa0027410-mRNA-1:exon:15214;Parent=Msa0027410-mRNA-1 |
| chr1_1 | exon | 51715013 | 51715504 | 51715013 | ID=Msa0027410-mRNA-1:exon:15213;Parent=Msa0027410-mRNA-1 |
| chr1_1 | exon | 51715821 | 51715907 | 51715821 | ID=Msa0027410-mRNA-1:exon:15212;Parent=Msa0027410-mRNA-1 |
| chr1_1 | exon | 51716682 | 51716818 | 51716682 | ID=Msa0027410-mRNA-1:exon:15211;Parent=Msa0027410-mRNA-1 |
| chr1_1 | exon | 51717094 | 51717145 | 51717094 | ID=Msa0027410-mRNA-1:exon:15210;Parent=Msa0027410-mRNA-1 |
| chr1_1 | exon | 51718707 | 51719208 | 51718707 | ID=Msa0027410-mRNA-1:exon:15209;Parent=Msa0027410-mRNA-1 |
| chr1_1 | five_prime_UTR | 51719043 | 51719208 | 51719043 | ID=Msa0027410-mRNA-1:five_prime_utr;Parent=Msa0027410-mRNA-1 |
| chr1_1 | CDS | 51718707 | 51719042 | 51718707 | ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1 |
| chr1_1 | CDS | 51717094 | 51717145 | 51717094 | ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1 |
| chr1_1 | CDS | 51716682 | 51716818 | 51716682 | ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1 |
| chr1_1 | CDS | 51715821 | 51715907 | 51715821 | ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1 |
| chr1_1 | CDS | 51715217 | 51715504 | 51715217 | ID=Msa0027410-mRNA-1:cds;Parent=Msa0027410-mRNA-1 |
| chr1_1 | three_prime_UTR | 51715013 | 51715216 | 51715013 | ID=Msa0027410-mRNA-1:three_prime_utr;Parent=Msa0027410-mRNA-1 |
| chr1_1 | three_prime_UTR | 51713642 | 51713777 | 51713642 | ID=Msa0027410-mRNA-1:three_prime_utr;Parent=Msa0027410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
