Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415920 | sp|Q3EDJ0|AB19I_ARATH | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 3.39e-153 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415920 | A0A072VM53 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027410 | Msa1415920 | 0.832446 | 9.411860e-56 | -8.615850e-47 |
| Msa0072170 | Msa1415920 | 0.812638 | 3.833180e-51 | -8.615850e-47 |
| Msa0120540 | Msa1415920 | 0.813073 | 3.078817e-51 | -8.615850e-47 |
| Msa1350690 | Msa1415920 | 0.802588 | 5.224179e-49 | -8.615850e-47 |
| Msa1360280 | Msa1415920 | 0.802911 | 4.480577e-49 | -8.615850e-47 |
| Msa1383480 | Msa1415920 | 0.863379 | 2.596140e-64 | -8.615850e-47 |
| Msa0650620 | Msa1415920 | 0.808341 | 3.248381e-50 | -8.615850e-47 |
| Msa0165320 | Msa1415920 | 0.829124 | 6.133438e-55 | -8.615850e-47 |
| Msa0173330 | Msa1415920 | 0.851192 | 1.041226e-60 | -8.615850e-47 |
| Msa0194720 | Msa1415920 | 0.825662 | 4.147824e-54 | -8.615850e-47 |
| Msa1272520 | Msa1415920 | 0.811277 | 7.587889e-51 | -8.615850e-47 |
| Msa1310660 | Msa1415920 | 0.838709 | 2.447915e-57 | -8.615850e-47 |
| Msa0404700 | Msa1415920 | 0.846216 | 2.496585e-59 | -8.615850e-47 |
| Msa0416320 | Msa1415920 | 0.862433 | 5.084652e-64 | -8.615850e-47 |
| Msa0462540 | Msa1415920 | 0.844611 | 6.793556e-59 | -8.615850e-47 |
| Msa0982590 | Msa1415920 | 0.810760 | 9.818560e-51 | -8.615850e-47 |
| Msa0287670 | Msa1415920 | 0.805352 | 1.391527e-49 | -8.615850e-47 |
| Msa0363100 | Msa1415920 | 0.814123 | 1.808544e-51 | -8.615850e-47 |
| Msa0363170 | Msa1415920 | 0.844596 | 6.855481e-59 | -8.615850e-47 |
| Msa1182640 | Msa1415920 | 0.851627 | 7.845625e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415920 | MtrunA17_Chr1g0183671 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| Msa1415920 | MtrunA17_Chr1g0193051 | 55.431 | 267 | 111 | 5 | 10 | 270 | 6 | 270 | 4.53e-100 | 296 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415920 | AT1G03905.1 | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 3.44e-154 | 432 |
| Msa1415920 | AT5G44110.1 | 74.061 | 293 | 62 | 4 | 8 | 299 | 3 | 282 | 2.44e-149 | 420 |
| Msa1415920 | AT1G03905.3 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 8.05e-126 | 358 |
| Msa1415920 | AT1G03905.2 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 8.05e-126 | 358 |
| Msa1415920 | AT1G03905.4 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 8.05e-126 | 358 |
| Msa1415920 | AT5G44110.2 | 76.555 | 209 | 44 | 2 | 8 | 215 | 3 | 207 | 3.46e-113 | 326 |
| Msa1415920 | AT5G02270.1 | 58.140 | 258 | 101 | 4 | 8 | 260 | 5 | 260 | 1.30e-104 | 308 |
| Msa1415920 | AT5G02270.2 | 53.169 | 284 | 100 | 5 | 8 | 260 | 5 | 286 | 1.75e-98 | 294 |
| Msa1415920 | AT5G44110.3 | 77.976 | 168 | 32 | 2 | 8 | 174 | 3 | 166 | 1.77e-90 | 268 |
| Msa1415920 | AT5G44110.4 | 81.250 | 144 | 27 | 0 | 72 | 215 | 1 | 144 | 1.17e-83 | 248 |
Find 94 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAATCTTCCCTTGTTTA+TGG | 0.082124 | tig0024289:+32175 | Msa1415920:three_prime_UTR |
| TGCCATTGTGATTTCGAATT+TGG | 0.083566 | tig0024289:-28182 | None:intergenic |
| TAGTGGTGATCTTGCTTATT+TGG | 0.198378 | tig0024289:+28480 | Msa1415920:CDS |
| CTTGAGCATTAGATGTATTC+TGG | 0.205818 | tig0024289:-31942 | None:intergenic |
| TGTTACTCGAATGGATTTAT+TGG | 0.213870 | tig0024289:+31374 | Msa1415920:CDS |
| GGCATTTCAGGTTCTCTTGC+TGG | 0.245341 | tig0024289:+31326 | Msa1415920:intron |
| GTAACTATTGAAAGTGTAAT+TGG | 0.265097 | tig0024289:-28146 | None:intergenic |
| AACTACGTTGTTGAAGATTC+TGG | 0.281207 | tig0024289:+28378 | Msa1415920:CDS |
| TTGCTTATTTGGGTGGATCT+TGG | 0.297721 | tig0024289:+28491 | Msa1415920:CDS |
| GGAGAGAGCGACGTGGATTA+TGG | 0.297797 | tig0024289:+28019 | None:intergenic |
| TCAATCCATGATACCTTATA+AGG | 0.305162 | tig0024289:-30553 | None:intergenic |
| AGGTAATCGCACAGAATATA+TGG | 0.307419 | tig0024289:-32563 | None:intergenic |
| GTGGATTATGGTTTATTCAT+AGG | 0.312133 | tig0024289:+28031 | None:intergenic |
| GGGTCTTCTTCATCCTTATA+AGG | 0.319104 | tig0024289:+30540 | Msa1415920:CDS |
| GACGAGGAGGCATCTGGATC+TGG | 0.325558 | tig0024289:-28335 | None:intergenic |
| GGAAAGCAAGAACAATAAAA+AGG | 0.329654 | tig0024289:+32437 | Msa1415920:intron |
| TGATTCTGATTAGGAAAATA+TGG | 0.333798 | tig0024289:+32490 | Msa1415920:three_prime_UTR |
| AACTAACCTGTGAATAGCTT+TGG | 0.338548 | tig0024289:+32465 | Msa1415920:three_prime_UTR |
| ACTAACCTGTGAATAGCTTT+GGG | 0.352912 | tig0024289:+32466 | Msa1415920:three_prime_UTR |
| GCTTTGGGGTGATTCTGATT+AGG | 0.364072 | tig0024289:+32481 | Msa1415920:three_prime_UTR |
| AGTGGTGATCTTGCTTATTT+GGG | 0.367794 | tig0024289:+28481 | Msa1415920:CDS |
| TGCTGTCTGTTGTCGAGTCC+TGG | 0.392760 | tig0024289:+31881 | Msa1415920:CDS |
| GCGTCGAGTGCAAATCTGTT+TGG | 0.394075 | tig0024289:+30519 | Msa1415920:CDS |
| TTAGGAAAATATGGAAGTTA+AGG | 0.396164 | tig0024289:+32499 | Msa1415920:three_prime_UTR |
| GGAGACATGGGCAACTCATT+TGG | 0.399798 | tig0024289:+31783 | Msa1415920:CDS |
| TTGTTGTTGGATGTCGTTGT+AGG | 0.412895 | tig0024289:-28272 | None:intergenic |
| AACGAACACGTTAGTGTGAA+TGG | 0.415199 | tig0024289:-28056 | None:intergenic |
| TCTGCTGAACATATGATATT+CGG | 0.419547 | tig0024289:+30125 | Msa1415920:CDS |
| AGAGCGGTGGTTGTTGTTGT+TGG | 0.426946 | tig0024289:-28285 | None:intergenic |
| CGTCGAGTGCAAATCTGTTT+GGG | 0.431328 | tig0024289:+30520 | Msa1415920:CDS |
| TGTAGGAGAATTGCATTCCT+TGG | 0.435035 | tig0024289:-28255 | None:intergenic |
| GCTGTTAAATTGGAGCTTGA+AGG | 0.437197 | tig0024289:-32209 | None:intergenic |
| ATCAACTTGTCTCTCCTGTC+AGG | 0.438091 | tig0024289:-30439 | None:intergenic |
| CTTTGTTTCAGCACGGAGCC+AGG | 0.439414 | tig0024289:-31899 | None:intergenic |
| AGCACCGACGAGGAGGCATC+TGG | 0.446647 | tig0024289:-28341 | None:intergenic |
| CTGTTAAATTGGAGCTTGAA+GGG | 0.447060 | tig0024289:-32208 | None:intergenic |
| TGTAAACTAGAAAGCTTGTA+AGG | 0.448709 | tig0024289:+32531 | Msa1415920:three_prime_UTR |
| CTCGTCGGTGCTAACGGATC+TGG | 0.449071 | tig0024289:+28352 | Msa1415920:CDS |
| CACTCGACGCCGCTGCCCAT+CGG | 0.468540 | tig0024289:-30506 | None:intergenic |
| TCGATAGTATGCCATGTGTC+TGG | 0.475819 | tig0024289:-32001 | None:intergenic |
| GCATTAGATGTATTCTGGAC+AGG | 0.480572 | tig0024289:-31937 | None:intergenic |
| GGATTTATTGGAATTCTTCA+AGG | 0.489781 | tig0024289:+31386 | Msa1415920:CDS |
| TCAGGTTCTCTTGCTGGATG+AGG | 0.494180 | tig0024289:+31332 | Msa1415920:intron |
| TGCCTCCTCGTCGGTGCTAA+CGG | 0.499231 | tig0024289:+28346 | Msa1415920:CDS |
| TCTGCAGTGGCGAATGCATA+AGG | 0.499282 | tig0024289:+30480 | Msa1415920:CDS |
| CCAGGGAGACATTCCACTGC+AGG | 0.508285 | tig0024289:+30094 | Msa1415920:intron |
| TTGGACTCTGATTCCGCTCG+AGG | 0.511444 | tig0024289:-28236 | None:intergenic |
| CAGAATACATCTAATGCTCA+AGG | 0.515770 | tig0024289:+31943 | Msa1415920:CDS |
| ACGAGGAGGCATCTGGATCT+GGG | 0.523721 | tig0024289:-28334 | None:intergenic |
| ACGTTGTTGAAGATTCTGGC+TGG | 0.524614 | tig0024289:+28382 | Msa1415920:CDS |
| CCTGGATGTTGTTACTCGAA+TGG | 0.526845 | tig0024289:+31365 | Msa1415920:CDS |
| GGTGATCTTGCTTATTTGGG+TGG | 0.528094 | tig0024289:+28484 | Msa1415920:CDS |
| TTGAAGGTGTTGATCCTGAC+AGG | 0.537915 | tig0024289:+30425 | Msa1415920:CDS |
| CGTTGTTGAAGATTCTGGCT+GGG | 0.548568 | tig0024289:+28383 | Msa1415920:CDS |
| GATTCTGGCTGGGAAGCATA+TGG | 0.548571 | tig0024289:+28393 | Msa1415920:CDS |
| GCTGGGAAGCATATGGTTGG+AGG | 0.550659 | tig0024289:+28400 | Msa1415920:CDS |
| CGAATGCATAAGGTATCCGA+TGG | 0.557234 | tig0024289:+30490 | Msa1415920:CDS |
| ATATACAAGAAGGCGAATTG+AGG | 0.569400 | tig0024289:+31809 | Msa1415920:CDS |
| CTTCAAGGAAGAATGTGAGC+AGG | 0.571124 | tig0024289:+31401 | Msa1415920:CDS |
| ATCACCCCAAAGCTATTCAC+AGG | 0.572229 | tig0024289:-32471 | None:intergenic |
| TGTTAAATTGGAGCTTGAAG+GGG | 0.573464 | tig0024289:-32207 | None:intergenic |
| GGAGATGAAGATGAATGAGA+TGG | 0.576311 | tig0024289:-28125 | None:intergenic |
| CTCTTCATCATCCAGACACA+TGG | 0.583208 | tig0024289:+31990 | Msa1415920:CDS |
| TGTAAGAATTAATTCGCATA+CGG | 0.586096 | tig0024289:+32081 | Msa1415920:three_prime_UTR |
| GCAGAGAAGTCTCCCTGCAG+TGG | 0.587594 | tig0024289:-30107 | None:intergenic |
| TCGAGCGGAATCAGAGTCCA+AGG | 0.594046 | tig0024289:+28238 | Msa1415920:CDS |
| TTTCAAGCTTTGTTTCAGCA+CGG | 0.594104 | tig0024289:-31906 | None:intergenic |
| ATAAGGTATCCGATGGGCAG+CGG | 0.595876 | tig0024289:+30497 | Msa1415920:CDS |
| CTGGCTGGGAAGCATATGGT+TGG | 0.597197 | tig0024289:+28397 | Msa1415920:CDS |
| AGATCCAGATGCCTCCTCGT+CGG | 0.603819 | tig0024289:+28337 | Msa1415920:CDS |
| CAGGGAGACATTCCACTGCA+GGG | 0.606306 | tig0024289:+30095 | Msa1415920:intron |
| GGATGAGGTAACAGTTGACC+TGG | 0.608537 | tig0024289:+31347 | Msa1415920:CDS |
| CATTTGGCATATATACAAGA+AGG | 0.608932 | tig0024289:+31799 | Msa1415920:CDS |
| AAGATGAATGAGATGGAACC+TGG | 0.614377 | tig0024289:-28118 | None:intergenic |
| AGGACTCGACAACAGACAGC+AGG | 0.618187 | tig0024289:-31879 | None:intergenic |
| CCATTCGAGTAACAACATCC+AGG | 0.626459 | tig0024289:-31365 | None:intergenic |
| ATCCGTTAGCACCGACGAGG+AGG | 0.628749 | tig0024289:-28348 | None:intergenic |
| AAGCTGCGTATCATGAAAAG+CGG | 0.639042 | tig0024289:-28452 | None:intergenic |
| TTGAAATCGACGAAGAGCGG+TGG | 0.643066 | tig0024289:-28298 | None:intergenic |
| GGATTACATAGCCATAAACA+AGG | 0.643911 | tig0024289:-32186 | None:intergenic |
| AGAATACATCTAATGCTCAA+GGG | 0.644371 | tig0024289:+31944 | Msa1415920:CDS |
| GATAATGAAGATTCCTCGAG+CGG | 0.647869 | tig0024289:+28223 | Msa1415920:CDS |
| TTCCAAATTCGAAATCACAA+TGG | 0.650720 | tig0024289:+28180 | Msa1415920:exon |
| CTAACCTGTGAATAGCTTTG+GGG | 0.651569 | tig0024289:+32467 | Msa1415920:three_prime_UTR |
| AGGTTGAAATCGACGAAGAG+CGG | 0.661441 | tig0024289:-28301 | None:intergenic |
| GATACGCAGCTTGTTTGTAG+TGG | 0.661885 | tig0024289:+28463 | Msa1415920:CDS |
| TGCTTGATATAGATCTGCAG+TGG | 0.665729 | tig0024289:+30467 | Msa1415920:CDS |
| ATCTGGATCTGGGAGAAACG+TGG | 0.670510 | tig0024289:-28324 | None:intergenic |
| GAATGCATAAGGTATCCGAT+GGG | 0.681230 | tig0024289:+30491 | Msa1415920:CDS |
| GATTACATAGCCATAAACAA+GGG | 0.695374 | tig0024289:-32185 | None:intergenic |
| CAGATCCGTTAGCACCGACG+AGG | 0.705355 | tig0024289:-28351 | None:intergenic |
| TGGATCTGGGAGAAACGTGG+AGG | 0.718996 | tig0024289:-28321 | None:intergenic |
| GCTGAACATATGATATTCGG+TGG | 0.727640 | tig0024289:+30128 | Msa1415920:CDS |
| TGTCTGGATGATGAAGAGAA+CGG | 0.762534 | tig0024289:-31985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATTATAAATTGAAAAA+TGG | - | tig0024289:30201-30220 | None:intergenic | 10.0% |
| !! | GTAATAAAAAAAAGTTAATT+TGG | - | tig0024289:30783-30802 | None:intergenic | 10.0% |
| !! | ATAATATATATTTATGTTAC+TGG | - | tig0024289:32369-32388 | None:intergenic | 10.0% |
| !! | AACTTATGAATTAACATAAA+CGG | - | tig0024289:28836-28855 | None:intergenic | 15.0% |
| !!! | TATGAATATACAATTTTTGT+TGG | - | tig0024289:28863-28882 | None:intergenic | 15.0% |
| !!! | ATTTTATGATATACTACTAA+TGG | - | tig0024289:28996-29015 | None:intergenic | 15.0% |
| !! | TTTATATAGGTATTAGTAAT+AGG | - | tig0024289:29534-29553 | None:intergenic | 15.0% |
| !! | AATAAATATTGTCCTTAATA+GGG | - | tig0024289:30269-30288 | None:intergenic | 15.0% |
| !! | TCAATATGATATCTAATTAT+TGG | + | tig0024289:31196-31215 | Msa1415920:intron | 15.0% |
| !!! | AAAAATTGTCTTTTTTAGTT+AGG | - | tig0024289:31624-31643 | None:intergenic | 15.0% |
| !!! | AAATTATTTTCATTTGCAAT+TGG | - | tig0024289:32042-32061 | None:intergenic | 15.0% |
| !!! | TATATAATTTTTTTTTCCCT+TGG | + | tig0024289:32386-32405 | Msa1415920:intron | 15.0% |
| !! | CAAAAATAAGTTAATCCAAA+CGG | - | tig0024289:28794-28813 | None:intergenic | 20.0% |
| !! | ATAAGCTGAAAATAACTTTA+TGG | + | tig0024289:29069-29088 | Msa1415920:intron | 20.0% |
| !! | TCAATTCAAAGTAAATACAA+AGG | - | tig0024289:29632-29651 | None:intergenic | 20.0% |
| !! | AAAACAAAACCAAACTTTAA+AGG | - | tig0024289:29803-29822 | None:intergenic | 20.0% |
| !! | AACGACATTAATATTTGAAA+AGG | - | tig0024289:30066-30085 | None:intergenic | 20.0% |
| !! | CAATAAATATTGTCCTTAAT+AGG | - | tig0024289:30270-30289 | None:intergenic | 20.0% |
| !!! | TGTATATTGTGAGTTTTTAT+TGG | - | tig0024289:30856-30875 | None:intergenic | 20.0% |
| !! | TAAGATAATAGCACAATATT+TGG | - | tig0024289:30901-30920 | None:intergenic | 20.0% |
| !! | AGAAAAAATATCAGATGTTA+AGG | + | tig0024289:31837-31856 | Msa1415920:CDS | 20.0% |
| !!! | AACCTAGCTAAATTTTTATT+TGG | - | tig0024289:32128-32147 | None:intergenic | 20.0% |
| !! | ACTTGATATATGTTTAATCA+AGG | + | tig0024289:32279-32298 | Msa1415920:intron | 20.0% |
| ! | ACTAGAAAAACTTAAAAACC+AGG | + | tig0024289:28100-28119 | Msa1415920:five_prime_UTR | 25.0% |
| !! | GTAACTATTGAAAGTGTAAT+TGG | - | tig0024289:28149-28168 | None:intergenic | 25.0% |
| !!! | TTCTCATTTTTAATGTCGTT+AGG | + | tig0024289:28557-28576 | Msa1415920:intron | 25.0% |
| !! | TTTTAATGTCGTTAGGAAAT+AGG | + | tig0024289:28564-28583 | Msa1415920:intron | 25.0% |
| ! | TTTAATGTCGTTAGGAAATA+GGG | + | tig0024289:28565-28584 | Msa1415920:intron | 25.0% |
| !! | AGGATGCTTTTCATATATTA+TGG | + | tig0024289:28744-28763 | Msa1415920:intron | 25.0% |
| ! | AAGGTAGTTAATGAAAAAAC+AGG | - | tig0024289:28887-28906 | None:intergenic | 25.0% |
| !! | TTGGCTTATTATTTAGCTTA+TGG | - | tig0024289:28963-28982 | None:intergenic | 25.0% |
| ! | AAATAATAAGCCAATCCAAA+CGG | + | tig0024289:28969-28988 | Msa1415920:intron | 25.0% |
| !! | GGACTGTTTAATAGATTTTA+TGG | - | tig0024289:29113-29132 | None:intergenic | 25.0% |
| ! | AATAAGCCGAAAACAAATTA+TGG | + | tig0024289:29153-29172 | Msa1415920:intron | 25.0% |
| !!! | ACATGTCCATAATTTGTTTT+CGG | - | tig0024289:29162-29181 | None:intergenic | 25.0% |
| !! | ATCTTGTTTAGTAGATCTTA+TGG | - | tig0024289:29197-29216 | None:intergenic | 25.0% |
| ! | ATTAAGAAGGAATAGAAACA+GGG | - | tig0024289:29439-29458 | None:intergenic | 25.0% |
| !! | TGTTTCTATTCCTTCTTAAT+GGG | + | tig0024289:29439-29458 | Msa1415920:intron | 25.0% |
| ! | GGAAGAGTTATACTTTATAT+AGG | - | tig0024289:29547-29566 | None:intergenic | 25.0% |
| !! | GTTTTCAAATTCTTAAGACA+AGG | + | tig0024289:29579-29598 | Msa1415920:intron | 25.0% |
| ! | TAAATGTTCCTAAAAAGTGA+GGG | - | tig0024289:29663-29682 | None:intergenic | 25.0% |
| ! | TTAAATGTTCCTAAAAAGTG+AGG | - | tig0024289:29664-29683 | None:intergenic | 25.0% |
| !!! | TCACTTTTTAGGAACATTTA+AGG | + | tig0024289:29663-29682 | Msa1415920:intron | 25.0% |
| !!! | AACATTTAAGGCAAACATTT+TGG | + | tig0024289:29675-29694 | Msa1415920:intron | 25.0% |
| !! | AAATTTTACGAGACTAAATG+TGG | + | tig0024289:29706-29725 | Msa1415920:intron | 25.0% |
| !! | AATTTTACGAGACTAAATGT+GGG | + | tig0024289:29707-29726 | Msa1415920:intron | 25.0% |
| !!! | GATTGATTTCCTTTAAAGTT+TGG | + | tig0024289:29791-29810 | Msa1415920:intron | 25.0% |
| ! | AGTATATAAAGTTCAAACTC+AGG | - | tig0024289:30644-30663 | None:intergenic | 25.0% |
| ! | GAACTTTATATACTTTATCC+TGG | + | tig0024289:30650-30669 | Msa1415920:intron | 25.0% |
| ! | ACTAGAATTCAGATTAAAGA+GGG | - | tig0024289:30700-30719 | None:intergenic | 25.0% |
| ! | TACTAGAATTCAGATTAAAG+AGG | - | tig0024289:30701-30720 | None:intergenic | 25.0% |
| ! | TTTATGACAATTTGTAGACT+AGG | + | tig0024289:31059-31078 | Msa1415920:intron | 25.0% |
| ! | TTATGACAATTTGTAGACTA+GGG | + | tig0024289:31060-31079 | Msa1415920:intron | 25.0% |
| ! | TAAATTTGAGAAAACTGCAA+CGG | + | tig0024289:31468-31487 | Msa1415920:intron | 25.0% |
| ! | TGTAAGAATTAATTCGCATA+CGG | + | tig0024289:32081-32100 | Msa1415920:three_prime_UTR | 25.0% |
| ! | CACCAAATAAAAATTTAGCT+AGG | + | tig0024289:32123-32142 | Msa1415920:three_prime_UTR | 25.0% |
| ! | ACTACTAAAAGCTGTTAAAT+TGG | - | tig0024289:32222-32241 | None:intergenic | 25.0% |
| !! | GCTTTTAGTAGTTTTCTTTT+TGG | + | tig0024289:32230-32249 | Msa1415920:intron | 25.0% |
| ! | AATGTACAATAAAATCACGT+GGG | + | tig0024289:32332-32351 | Msa1415920:intron | 25.0% |
| ! | TGATTCTGATTAGGAAAATA+TGG | + | tig0024289:32490-32509 | Msa1415920:three_prime_UTR | 25.0% |
| ! | TTAGGAAAATATGGAAGTTA+AGG | + | tig0024289:32499-32518 | Msa1415920:three_prime_UTR | 25.0% |
| TTCCAAATTCGAAATCACAA+TGG | + | tig0024289:28180-28199 | Msa1415920:exon | 30.0% | |
| ! | ATTCATAATTTTGTGTCGAG+TGG | + | tig0024289:28625-28644 | Msa1415920:intron | 30.0% |
| GATTACGCACTGTAATTTAT+TGG | + | tig0024289:28713-28732 | Msa1415920:intron | 30.0% | |
| CAGCTTAATTAAGCATTCTA+GGG | + | tig0024289:28768-28787 | Msa1415920:intron | 30.0% | |
| AATAATAAGCCAATCCAAAC+GGG | + | tig0024289:28970-28989 | Msa1415920:intron | 30.0% | |
| TAGAATTAGGACTTGTATGT+TGG | + | tig0024289:29274-29293 | Msa1415920:intron | 30.0% | |
| AGAATTAGGACTTGTATGTT+GGG | + | tig0024289:29275-29294 | Msa1415920:intron | 30.0% | |
| ! | TTTAAGCTCTGATAATACGT+TGG | + | tig0024289:29344-29363 | Msa1415920:intron | 30.0% |
| ! | TTAAGCTCTGATAATACGTT+GGG | + | tig0024289:29345-29364 | Msa1415920:intron | 30.0% |
| CATTAAGAAGGAATAGAAAC+AGG | - | tig0024289:29440-29459 | None:intergenic | 30.0% | |
| !! | CTGTTTCTATTCCTTCTTAA+TGG | + | tig0024289:29438-29457 | Msa1415920:intron | 30.0% |
| CCTCGAAACTAAGATTATAT+CGG | - | tig0024289:29473-29492 | None:intergenic | 30.0% | |
| ATAATCTTAGTTTCGAGGAT+AGG | + | tig0024289:29475-29494 | Msa1415920:intron | 30.0% | |
| AGTATAACTCTTCCAAAAGT+AGG | + | tig0024289:29553-29572 | Msa1415920:intron | 30.0% | |
| GTATAACTCTTCCAAAAGTA+GGG | + | tig0024289:29554-29573 | Msa1415920:intron | 30.0% | |
| AGGAAATCAATCTATAGTTC+TGG | - | tig0024289:29783-29802 | None:intergenic | 30.0% | |
| ACACATGTACAAAACATAGT+GGG | + | tig0024289:29834-29853 | Msa1415920:intron | 30.0% | |
| ! | AGCTTGATGATCATAAAACA+CGG | + | tig0024289:29865-29884 | Msa1415920:intron | 30.0% |
| AAAGGAATTGATCAAAGCAA+AGG | - | tig0024289:30048-30067 | None:intergenic | 30.0% | |
| TCTGCTGAACATATGATATT+CGG | + | tig0024289:30125-30144 | Msa1415920:CDS | 30.0% | |
| TTAGATAGCCAAACATTACA+TGG | - | tig0024289:30344-30363 | None:intergenic | 30.0% | |
| !! | CTTAGTTTTTCTATGCATCA+GGG | - | tig0024289:30384-30403 | None:intergenic | 30.0% |
| !! | TCTTAGTTTTTCTATGCATC+AGG | - | tig0024289:30385-30404 | None:intergenic | 30.0% |
| ! | TTCATCCTTATAAGGTATCA+TGG | + | tig0024289:30548-30567 | Msa1415920:intron | 30.0% |
| TCAATCCATGATACCTTATA+AGG | - | tig0024289:30556-30575 | None:intergenic | 30.0% | |
| !! | TCTTTTATTTCGAGAAAAGG+TGG | - | tig0024289:30676-30695 | None:intergenic | 30.0% |
| !! | GGATCTTTTATTTCGAGAAA+AGG | - | tig0024289:30679-30698 | None:intergenic | 30.0% |
| ATAGCACAATATTTGGCTAT+TGG | - | tig0024289:30894-30913 | None:intergenic | 30.0% | |
| ! | ATGCAGTAAATTGAAGTGTT+TGG | + | tig0024289:31012-31031 | Msa1415920:intron | 30.0% |
| !!! | AAAAAGAGCTTTTAGCTTGA+TGG | + | tig0024289:31090-31109 | Msa1415920:intron | 30.0% |
| ATTTCAACAAGAATTACTCC+TGG | + | tig0024289:31160-31179 | Msa1415920:intron | 30.0% | |
| ! | TGTTACTCGAATGGATTTAT+TGG | + | tig0024289:31374-31393 | Msa1415920:CDS | 30.0% |
| GGATTTATTGGAATTCTTCA+AGG | + | tig0024289:31386-31405 | Msa1415920:CDS | 30.0% | |
| AAATTTGAGAAAACTGCAAC+GGG | + | tig0024289:31469-31488 | Msa1415920:intron | 30.0% | |
| ! | TATGCAACTCACATTTTTGA+TGG | + | tig0024289:31757-31776 | Msa1415920:CDS | 30.0% |
| CATTTGGCATATATACAAGA+AGG | + | tig0024289:31799-31818 | Msa1415920:CDS | 30.0% | |
| AGAATACATCTAATGCTCAA+GGG | + | tig0024289:31944-31963 | Msa1415920:CDS | 30.0% | |
| GATTACATAGCCATAAACAA+GGG | - | tig0024289:32188-32207 | None:intergenic | 30.0% | |
| CAATGTACAATAAAATCACG+TGG | + | tig0024289:32331-32350 | Msa1415920:intron | 30.0% | |
| ATGTACAATAAAATCACGTG+GGG | + | tig0024289:32333-32352 | Msa1415920:intron | 30.0% | |
| !!! | TTTTTTCCCTTGGTTACAAA+CGG | + | tig0024289:32396-32415 | Msa1415920:intron | 30.0% |
| GGAAAGCAAGAACAATAAAA+AGG | + | tig0024289:32437-32456 | Msa1415920:intron | 30.0% | |
| TGTAAACTAGAAAGCTTGTA+AGG | + | tig0024289:32531-32550 | Msa1415920:three_prime_UTR | 30.0% | |
| ! | CTAACGTGTTCGTTTTGTAT+CGG | + | tig0024289:28065-28084 | Msa1415920:five_prime_UTR | 35.0% |
| TGCCATTGTGATTTCGAATT+TGG | - | tig0024289:28185-28204 | None:intergenic | 35.0% | |
| AACTACGTTGTTGAAGATTC+TGG | + | tig0024289:28378-28397 | Msa1415920:CDS | 35.0% | |
| TAGTGGTGATCTTGCTTATT+TGG | + | tig0024289:28480-28499 | Msa1415920:CDS | 35.0% | |
| AGTGGTGATCTTGCTTATTT+GGG | + | tig0024289:28481-28500 | Msa1415920:CDS | 35.0% | |
| GAGTGGTTAAAATGAAATGC+TGG | + | tig0024289:28642-28661 | Msa1415920:intron | 35.0% | |
| ! | GTAATTTATTGGTGACTGTG+AGG | + | tig0024289:28724-28743 | Msa1415920:intron | 35.0% |
| CCTAGAATGCTTAATTAAGC+TGG | - | tig0024289:28770-28789 | None:intergenic | 35.0% | |
| CCAGCTTAATTAAGCATTCT+AGG | + | tig0024289:28767-28786 | Msa1415920:intron | 35.0% | |
| TAACTACCTTGACAAGCTTA+TGG | + | tig0024289:28897-28916 | Msa1415920:intron | 35.0% | |
| ! | ATTTTGCCATAAGCTTGTCA+AGG | - | tig0024289:28906-28925 | None:intergenic | 35.0% |
| ! | AACCATAAGTAGCTCTATCT+TGG | + | tig0024289:29034-29053 | Msa1415920:intron | 35.0% |
| TTCCAAGATAGAGCTACTTA+TGG | - | tig0024289:29039-29058 | None:intergenic | 35.0% | |
| AGCTCTATCTTGGAAATTGA+TGG | + | tig0024289:29044-29063 | Msa1415920:intron | 35.0% | |
| AAATACGTATAGAGTCTGCT+TGG | - | tig0024289:29235-29254 | None:intergenic | 35.0% | |
| AAGCAGACTCTATACGTATT+TGG | + | tig0024289:29234-29253 | Msa1415920:intron | 35.0% | |
| !! | AATTCTAAAGTGTGCAAGCA+TGG | - | tig0024289:29261-29280 | None:intergenic | 35.0% |
| !! | TGCTTGCACACTTTAGAATT+AGG | + | tig0024289:29261-29280 | Msa1415920:intron | 35.0% |
| GGTAAAAACTCCCATTAAGA+AGG | - | tig0024289:29452-29471 | None:intergenic | 35.0% | |
| CCGATATAATCTTAGTTTCG+AGG | + | tig0024289:29470-29489 | Msa1415920:intron | 35.0% | |
| ! | TTTGAAAACCACCCTACTTT+TGG | - | tig0024289:29568-29587 | None:intergenic | 35.0% |
| !!! | TTATGTTGCCCTCACTTTTT+AGG | + | tig0024289:29652-29671 | Msa1415920:intron | 35.0% |
| TCTGGCTAAGAGAACATAAA+GGG | - | tig0024289:29765-29784 | None:intergenic | 35.0% | |
| ! | TTCTGGCTAAGAGAACATAA+AGG | - | tig0024289:29766-29785 | None:intergenic | 35.0% |
| ! | CACTATGTTTTGTACATGTG+TGG | - | tig0024289:29835-29854 | None:intergenic | 35.0% |
| CACACATGTACAAAACATAG+TGG | + | tig0024289:29833-29852 | Msa1415920:intron | 35.0% | |
| ! | TTGATGATCATAAAACACGG+TGG | + | tig0024289:29868-29887 | Msa1415920:intron | 35.0% |
| GAAAGCTACTAGAGATCTAA+GGG | - | tig0024289:29905-29924 | None:intergenic | 35.0% | |
| AGAAAGCTACTAGAGATCTA+AGG | - | tig0024289:29906-29925 | None:intergenic | 35.0% | |
| ! | TAGCTGAGATTTTGTGTTTG+TGG | + | tig0024289:29968-29987 | Msa1415920:intron | 35.0% |
| ! | AACATATGATATTCGGTGGT+GGG | + | tig0024289:30132-30151 | Msa1415920:intron | 35.0% |
| AAACTAGTCATACCATAGCA+TGG | + | tig0024289:30228-30247 | Msa1415920:intron | 35.0% | |
| CCTTAATAGGGTTTCATTGA+AGG | - | tig0024289:30257-30276 | None:intergenic | 35.0% | |
| CCTTCAATGAAACCCTATTA+AGG | + | tig0024289:30254-30273 | Msa1415920:intron | 35.0% | |
| ! | ATCATGGATTGAATAGCCTA+AGG | + | tig0024289:30564-30583 | Msa1415920:intron | 35.0% |
| ATGTGGTAGTTATGTTGTTG+TGG | + | tig0024289:30594-30613 | Msa1415920:intron | 35.0% | |
| AGCATACAAATATACAGAGC+TGG | - | tig0024289:31433-31452 | None:intergenic | 35.0% | |
| ! | TATCATCCTGTTTTGCATTG+GGG | - | tig0024289:31499-31518 | None:intergenic | 35.0% |
| ! | CTATCATCCTGTTTTGCATT+GGG | - | tig0024289:31500-31519 | None:intergenic | 35.0% |
| ! | ACTATCATCCTGTTTTGCAT+TGG | - | tig0024289:31501-31520 | None:intergenic | 35.0% |
| AGTTGATCCTAGTTGGAAAT+AGG | + | tig0024289:31518-31537 | Msa1415920:intron | 35.0% | |
| GTTGATCCTAGTTGGAAATA+GGG | + | tig0024289:31519-31538 | Msa1415920:intron | 35.0% | |
| ! | CTTTTACCCTATTTCCAACT+AGG | - | tig0024289:31528-31547 | None:intergenic | 35.0% |
| TTTAGTTAGGATTCATGAGC+AGG | - | tig0024289:31611-31630 | None:intergenic | 35.0% | |
| GTAGCTTCTCTCTACAAAAA+AGG | - | tig0024289:31730-31749 | None:intergenic | 35.0% | |
| !! | AACTCACATTTTTGATGGAC+TGG | + | tig0024289:31762-31781 | Msa1415920:CDS | 35.0% |
| ATATACAAGAAGGCGAATTG+AGG | + | tig0024289:31809-31828 | Msa1415920:CDS | 35.0% | |
| !! | TTTCAAGCTTTGTTTCAGCA+CGG | - | tig0024289:31909-31928 | None:intergenic | 35.0% |
| CTTGAGCATTAGATGTATTC+TGG | - | tig0024289:31945-31964 | None:intergenic | 35.0% | |
| CAGAATACATCTAATGCTCA+AGG | + | tig0024289:31943-31962 | Msa1415920:CDS | 35.0% | |
| ! | CTGTAATCTTCCCTTGTTTA+TGG | + | tig0024289:32175-32194 | Msa1415920:three_prime_UTR | 35.0% |
| GGATTACATAGCCATAAACA+AGG | - | tig0024289:32189-32208 | None:intergenic | 35.0% | |
| TGTTAAATTGGAGCTTGAAG+GGG | - | tig0024289:32210-32229 | None:intergenic | 35.0% | |
| CTGTTAAATTGGAGCTTGAA+GGG | - | tig0024289:32211-32230 | None:intergenic | 35.0% | |
| ! | TTTTTCCCTTGGTTACAAAC+GGG | + | tig0024289:32397-32416 | Msa1415920:intron | 35.0% |
| AACTAACCTGTGAATAGCTT+TGG | + | tig0024289:32465-32484 | Msa1415920:three_prime_UTR | 35.0% | |
| ACTAACCTGTGAATAGCTTT+GGG | + | tig0024289:32466-32485 | Msa1415920:three_prime_UTR | 35.0% | |
| AACGAACACGTTAGTGTGAA+TGG | - | tig0024289:28059-28078 | None:intergenic | 40.0% | |
| AAGATGAATGAGATGGAACC+TGG | - | tig0024289:28121-28140 | None:intergenic | 40.0% | |
| GGAGATGAAGATGAATGAGA+TGG | - | tig0024289:28128-28147 | None:intergenic | 40.0% | |
| GATAATGAAGATTCCTCGAG+CGG | + | tig0024289:28223-28242 | Msa1415920:CDS | 40.0% | |
| TGTAGGAGAATTGCATTCCT+TGG | - | tig0024289:28258-28277 | None:intergenic | 40.0% | |
| ! | TTGTTGTTGGATGTCGTTGT+AGG | - | tig0024289:28275-28294 | None:intergenic | 40.0% |
| AAGCTGCGTATCATGAAAAG+CGG | - | tig0024289:28455-28474 | None:intergenic | 40.0% | |
| TTGCTTATTTGGGTGGATCT+TGG | + | tig0024289:28491-28510 | Msa1415920:CDS | 40.0% | |
| GGATCTTGGAGTAAAAACGT+TGG | + | tig0024289:28505-28524 | Msa1415920:CDS | 40.0% | |
| TGTCGTTAGGAAATAGGGTT+AGG | + | tig0024289:28570-28589 | Msa1415920:intron | 40.0% | |
| !!! | GGTTTCGCTTTTTTCGCATT+CGG | + | tig0024289:28591-28610 | Msa1415920:intron | 40.0% |
| TATACTACTAATGGCCCGTT+TGG | - | tig0024289:28987-29006 | None:intergenic | 40.0% | |
| TTCCTAGCATAAGCACTAGT+GGG | - | tig0024289:29134-29153 | None:intergenic | 40.0% | |
| TTTCCTAGCATAAGCACTAG+TGG | - | tig0024289:29135-29154 | None:intergenic | 40.0% | |
| AAACCTCATACACTAAGTGC+TGG | - | tig0024289:29326-29345 | None:intergenic | 40.0% | |
| TCTGATAATACGTTGGGACT+TGG | + | tig0024289:29351-29370 | Msa1415920:intron | 40.0% | |
| CTGATAATACGTTGGGACTT+GGG | + | tig0024289:29352-29371 | Msa1415920:intron | 40.0% | |
| AGGAATAGAAACAGGGTCAA+GGG | - | tig0024289:29432-29451 | None:intergenic | 40.0% | |
| AAGGAATAGAAACAGGGTCA+AGG | - | tig0024289:29433-29452 | None:intergenic | 40.0% | |
| TAACTCTTCCAAAAGTAGGG+TGG | + | tig0024289:29557-29576 | Msa1415920:intron | 40.0% | |
| ! | TAATGTCGTTGCTGTTATCC+AGG | + | tig0024289:30076-30095 | Msa1415920:intron | 40.0% |
| ! | AATGTCGTTGCTGTTATCCA+GGG | + | tig0024289:30077-30096 | Msa1415920:intron | 40.0% |
| GCTGAACATATGATATTCGG+TGG | + | tig0024289:30128-30147 | Msa1415920:CDS | 40.0% | |
| ! | GAACATATGATATTCGGTGG+TGG | + | tig0024289:30131-30150 | Msa1415920:intron | 40.0% |
| ! | TATATACAAGCGTTGCATGC+AGG | + | tig0024289:30316-30335 | Msa1415920:intron | 40.0% |
| TGCAGGTTCCATGTAATGTT+TGG | + | tig0024289:30333-30352 | Msa1415920:intron | 40.0% | |
| !! | CTTCTGCTTTTGACAGTTGA+AGG | + | tig0024289:30409-30428 | Msa1415920:intron | 40.0% |
| TGCTTGATATAGATCTGCAG+TGG | + | tig0024289:30467-30486 | Msa1415920:CDS | 40.0% | |
| ! | GAATGCATAAGGTATCCGAT+GGG | + | tig0024289:30491-30510 | Msa1415920:CDS | 40.0% |
| GGGTCTTCTTCATCCTTATA+AGG | + | tig0024289:30540-30559 | Msa1415920:CDS | 40.0% | |
| TAGCCTAAGGAATTTGCATG+TGG | + | tig0024289:30577-30596 | Msa1415920:intron | 40.0% | |
| CTACCACATGCAAATTCCTT+AGG | - | tig0024289:30583-30602 | None:intergenic | 40.0% | |
| ATGTTGTTGTGGACAATGTC+AGG | + | tig0024289:30605-30624 | Msa1415920:intron | 40.0% | |
| TGTTGTTGTGGACAATGTCA+GGG | + | tig0024289:30606-30625 | Msa1415920:intron | 40.0% | |
| ATTGAACATCTGCTTACTCC+AGG | - | tig0024289:31181-31200 | None:intergenic | 40.0% | |
| ACTGTAGTGTAACCCTTGAT+TGG | + | tig0024289:31305-31324 | Msa1415920:intron | 40.0% | |
| TAACCCTTGATTGGCATTTC+AGG | + | tig0024289:31314-31333 | Msa1415920:intron | 40.0% | |
| GAACCTGAAATGCCAATCAA+GGG | - | tig0024289:31320-31339 | None:intergenic | 40.0% | |
| AGAACCTGAAATGCCAATCA+AGG | - | tig0024289:31321-31340 | None:intergenic | 40.0% | |
| GGATGATAGTTGATCCTAGT+TGG | + | tig0024289:31511-31530 | Msa1415920:intron | 40.0% | |
| ! | TAAGCCTTTTTCCACCTAGT+GGG | + | tig0024289:31555-31574 | Msa1415920:intron | 40.0% |
| TTCATATAACCAACCCCACT+AGG | - | tig0024289:31572-31591 | None:intergenic | 40.0% | |
| TAGGATTCATGAGCAGGTTA+TGG | - | tig0024289:31605-31624 | None:intergenic | 40.0% | |
| !!! | TTTTTGATGGACTGGAGACA+TGG | + | tig0024289:31770-31789 | Msa1415920:CDS | 40.0% |
| !!! | TTTTGATGGACTGGAGACAT+GGG | + | tig0024289:31771-31790 | Msa1415920:CDS | 40.0% |
| GCATTAGATGTATTCTGGAC+AGG | - | tig0024289:31940-31959 | None:intergenic | 40.0% | |
| TGTCTGGATGATGAAGAGAA+CGG | - | tig0024289:31988-32007 | None:intergenic | 40.0% | |
| GCTGTTAAATTGGAGCTTGA+AGG | - | tig0024289:32212-32231 | None:intergenic | 40.0% | |
| ! | CTAACCTGTGAATAGCTTTG+GGG | + | tig0024289:32467-32486 | Msa1415920:three_prime_UTR | 40.0% |
| AGGTTGAAATCGACGAAGAG+CGG | - | tig0024289:28304-28323 | None:intergenic | 45.0% | |
| ACGTTGTTGAAGATTCTGGC+TGG | + | tig0024289:28382-28401 | Msa1415920:CDS | 45.0% | |
| ! | CGTTGTTGAAGATTCTGGCT+GGG | + | tig0024289:28383-28402 | Msa1415920:CDS | 45.0% |
| ! | GATACGCAGCTTGTTTGTAG+TGG | + | tig0024289:28463-28482 | Msa1415920:CDS | 45.0% |
| GGTGATCTTGCTTATTTGGG+TGG | + | tig0024289:28484-28503 | Msa1415920:CDS | 45.0% | |
| !! | TTAAGCATTCTAGGGCCGTT+TGG | + | tig0024289:28776-28795 | Msa1415920:intron | 45.0% |
| TACTAATGGCCCGTTTGGAT+TGG | - | tig0024289:28982-29001 | None:intergenic | 45.0% | |
| !! | CTCATACACTAAGTGCTGGT+TGG | - | tig0024289:29322-29341 | None:intergenic | 45.0% |
| CAACCAGCACTTAGTGTATG+AGG | + | tig0024289:29320-29339 | Msa1415920:intron | 45.0% | |
| CATTGAAGGACTCCATGCTA+TGG | - | tig0024289:30243-30262 | None:intergenic | 45.0% | |
| !! | TTGAAGGTGTTGATCCTGAC+AGG | + | tig0024289:30425-30444 | Msa1415920:CDS | 45.0% |
| ATCAACTTGTCTCTCCTGTC+AGG | - | tig0024289:30442-30461 | None:intergenic | 45.0% | |
| ! | CGAATGCATAAGGTATCCGA+TGG | + | tig0024289:30490-30509 | Msa1415920:CDS | 45.0% |
| CGTCGAGTGCAAATCTGTTT+GGG | + | tig0024289:30520-30539 | Msa1415920:CDS | 45.0% | |
| TATTTCGAGAAAAGGTGGCC+AGG | - | tig0024289:30671-30690 | None:intergenic | 45.0% | |
| CCATTCGAGTAACAACATCC+AGG | - | tig0024289:31368-31387 | None:intergenic | 45.0% | |
| CCTGGATGTTGTTACTCGAA+TGG | + | tig0024289:31365-31384 | Msa1415920:CDS | 45.0% | |
| CTTCAAGGAAGAATGTGAGC+AGG | + | tig0024289:31401-31420 | Msa1415920:CDS | 45.0% | |
| ! | CTAAGCCTTTTTCCACCTAG+TGG | + | tig0024289:31554-31573 | Msa1415920:intron | 45.0% |
| ! | AAGCCTTTTTCCACCTAGTG+GGG | + | tig0024289:31556-31575 | Msa1415920:intron | 45.0% |
| ATATAACCAACCCCACTAGG+TGG | - | tig0024289:31569-31588 | None:intergenic | 45.0% | |
| CTCTTCATCATCCAGACACA+TGG | + | tig0024289:31990-32009 | Msa1415920:CDS | 45.0% | |
| TCGATAGTATGCCATGTGTC+TGG | - | tig0024289:32004-32023 | None:intergenic | 45.0% | |
| ACAATAAAATCACGTGGGGC+TGG | + | tig0024289:32337-32356 | Msa1415920:intron | 45.0% | |
| CTCTTCCCGTTTGTAACCAA+GGG | - | tig0024289:32405-32424 | None:intergenic | 45.0% | |
| TCTCTTCCCGTTTGTAACCA+AGG | - | tig0024289:32406-32425 | None:intergenic | 45.0% | |
| CGGGAAGAGAAAGTAGACAA+AGG | + | tig0024289:32416-32435 | Msa1415920:intron | 45.0% | |
| ATCACCCCAAAGCTATTCAC+AGG | - | tig0024289:32474-32493 | None:intergenic | 45.0% | |
| !! | GCTTTGGGGTGATTCTGATT+AGG | + | tig0024289:32481-32500 | Msa1415920:three_prime_UTR | 45.0% |
| ! | AGAGCGGTGGTTGTTGTTGT+TGG | - | tig0024289:28288-28307 | None:intergenic | 50.0% |
| TTGAAATCGACGAAGAGCGG+TGG | - | tig0024289:28301-28320 | None:intergenic | 50.0% | |
| ATCTGGATCTGGGAGAAACG+TGG | - | tig0024289:28327-28346 | None:intergenic | 50.0% | |
| ! | GATTCTGGCTGGGAAGCATA+TGG | + | tig0024289:28393-28412 | Msa1415920:CDS | 50.0% |
| GTCCCACTAGTGCTTATGCT+AGG | + | tig0024289:29129-29148 | Msa1415920:intron | 50.0% | |
| AGACAAGGTCTTCTGCAGCA+TGG | + | tig0024289:29594-29613 | Msa1415920:intron | 50.0% | |
| GACAAGGTCTTCTGCAGCAT+GGG | + | tig0024289:29595-29614 | Msa1415920:intron | 50.0% | |
| CTGCAGCATGGGTGAATGTT+AGG | + | tig0024289:29606-29625 | Msa1415920:intron | 50.0% | |
| TAAAACACGGTGGCCCACTT+CGG | + | tig0024289:29878-29897 | Msa1415920:intron | 50.0% | |
| GAGATCTAAGGGTCCGAAGT+GGG | - | tig0024289:29894-29913 | None:intergenic | 50.0% | |
| AGAGATCTAAGGGTCCGAAG+TGG | - | tig0024289:29895-29914 | None:intergenic | 50.0% | |
| ! | AGGAGTCAGGGTGCAGTTTT+AGG | - | tig0024289:30008-30027 | None:intergenic | 50.0% |
| GATCAAAGCAAAGGCAGCAC+AGG | - | tig0024289:30039-30058 | None:intergenic | 50.0% | |
| TCTGCAGTGGCGAATGCATA+AGG | + | tig0024289:30480-30499 | Msa1415920:CDS | 50.0% | |
| ! | ATAAGGTATCCGATGGGCAG+CGG | + | tig0024289:30497-30516 | Msa1415920:CDS | 50.0% |
| GCGTCGAGTGCAAATCTGTT+TGG | + | tig0024289:30519-30538 | Msa1415920:CDS | 50.0% | |
| !! | GGCATTTCAGGTTCTCTTGC+TGG | + | tig0024289:31326-31345 | Msa1415920:intron | 50.0% |
| TCAGGTTCTCTTGCTGGATG+AGG | + | tig0024289:31332-31351 | Msa1415920:intron | 50.0% | |
| GGATGAGGTAACAGTTGACC+TGG | + | tig0024289:31347-31366 | Msa1415920:CDS | 50.0% | |
| GGATGTCCCCAATGCAAAAC+AGG | + | tig0024289:31490-31509 | Msa1415920:intron | 50.0% | |
| CAACCCCACTAGGTGGAAAA+AGG | - | tig0024289:31562-31581 | None:intergenic | 50.0% | |
| ! | CTTTTTCCACCTAGTGGGGT+TGG | + | tig0024289:31560-31579 | Msa1415920:intron | 50.0% |
| GGAGACATGGGCAACTCATT+TGG | + | tig0024289:31783-31802 | Msa1415920:CDS | 50.0% | |
| TTGGACTCTGATTCCGCTCG+AGG | - | tig0024289:28239-28258 | None:intergenic | 55.0% | |
| TCGAGCGGAATCAGAGTCCA+AGG | + | tig0024289:28238-28257 | Msa1415920:CDS | 55.0% | |
| TGGATCTGGGAGAAACGTGG+AGG | - | tig0024289:28324-28343 | None:intergenic | 55.0% | |
| !! | ACGAGGAGGCATCTGGATCT+GGG | - | tig0024289:28337-28356 | None:intergenic | 55.0% |
| AGATCCAGATGCCTCCTCGT+CGG | + | tig0024289:28337-28356 | Msa1415920:CDS | 55.0% | |
| ! | CTGGCTGGGAAGCATATGGT+TGG | + | tig0024289:28397-28416 | Msa1415920:CDS | 55.0% |
| ! | GCTGGGAAGCATATGGTTGG+AGG | + | tig0024289:28400-28419 | Msa1415920:CDS | 55.0% |
| CAGGTTAGCAGGAGGAGTCA+GGG | - | tig0024289:30020-30039 | None:intergenic | 55.0% | |
| ACAGGTTAGCAGGAGGAGTC+AGG | - | tig0024289:30021-30040 | None:intergenic | 55.0% | |
| CAAAGGCAGCACAGGTTAGC+AGG | - | tig0024289:30031-30050 | None:intergenic | 55.0% | |
| CAGGGAGACATTCCACTGCA+GGG | + | tig0024289:30095-30114 | Msa1415920:intron | 55.0% | |
| AGGACTCGACAACAGACAGC+AGG | - | tig0024289:31882-31901 | None:intergenic | 55.0% | |
| TGCTGTCTGTTGTCGAGTCC+TGG | + | tig0024289:31881-31900 | Msa1415920:CDS | 55.0% | |
| ! | CTTTGTTTCAGCACGGAGCC+AGG | - | tig0024289:31902-31921 | None:intergenic | 55.0% |
| !! | AAATCACGTGGGGCTGGCTT+AGG | + | tig0024289:32343-32362 | Msa1415920:intron | 55.0% |
| !! | GACGAGGAGGCATCTGGATC+TGG | - | tig0024289:28338-28357 | None:intergenic | 60.0% |
| !! | TGCCTCCTCGTCGGTGCTAA+CGG | + | tig0024289:28346-28365 | Msa1415920:CDS | 60.0% |
| !! | ATCCGTTAGCACCGACGAGG+AGG | - | tig0024289:28351-28370 | None:intergenic | 60.0% |
| !! | CAGATCCGTTAGCACCGACG+AGG | - | tig0024289:28354-28373 | None:intergenic | 60.0% |
| !! | CTCGTCGGTGCTAACGGATC+TGG | + | tig0024289:28352-28371 | Msa1415920:CDS | 60.0% |
| AGGCAGCACAGGTTAGCAGG+AGG | - | tig0024289:30028-30047 | None:intergenic | 60.0% | |
| CCTGCAGTGGAATGTCTCCC+TGG | - | tig0024289:30097-30116 | None:intergenic | 60.0% | |
| CCAGGGAGACATTCCACTGC+AGG | + | tig0024289:30094-30113 | Msa1415920:intron | 60.0% | |
| GCAGAGAAGTCTCCCTGCAG+TGG | - | tig0024289:30110-30129 | None:intergenic | 60.0% | |
| !! | AGCACCGACGAGGAGGCATC+TGG | - | tig0024289:28344-28363 | None:intergenic | 65.0% |
| CACTCGACGCCGCTGCCCAT+CGG | - | tig0024289:30509-30528 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024289 | gene | 28033 | 32578 | 28033 | ID=Msa1415920;Name=Msa1415920 |
| tig0024289 | mRNA | 28033 | 32578 | 28033 | ID=Msa1415920-mRNA-1;Parent=Msa1415920;Name=Msa1415920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|0.8|0.66|6|338|299 |
| tig0024289 | exon | 28033 | 28534 | 28033 | ID=Msa1415920-mRNA-1:exon:22661;Parent=Msa1415920-mRNA-1 |
| tig0024289 | exon | 30098 | 30149 | 30098 | ID=Msa1415920-mRNA-1:exon:22662;Parent=Msa1415920-mRNA-1 |
| tig0024289 | exon | 30425 | 30561 | 30425 | ID=Msa1415920-mRNA-1:exon:22663;Parent=Msa1415920-mRNA-1 |
| tig0024289 | exon | 31336 | 31422 | 31336 | ID=Msa1415920-mRNA-1:exon:22664;Parent=Msa1415920-mRNA-1 |
| tig0024289 | exon | 31739 | 32223 | 31739 | ID=Msa1415920-mRNA-1:exon:22665;Parent=Msa1415920-mRNA-1 |
| tig0024289 | exon | 32438 | 32578 | 32438 | ID=Msa1415920-mRNA-1:exon:22666;Parent=Msa1415920-mRNA-1 |
| tig0024289 | five_prime_UTR | 28033 | 28198 | 28033 | ID=Msa1415920-mRNA-1:five_prime_utr;Parent=Msa1415920-mRNA-1 |
| tig0024289 | CDS | 28199 | 28534 | 28199 | ID=Msa1415920-mRNA-1:cds;Parent=Msa1415920-mRNA-1 |
| tig0024289 | CDS | 30098 | 30149 | 30098 | ID=Msa1415920-mRNA-1:cds;Parent=Msa1415920-mRNA-1 |
| tig0024289 | CDS | 30425 | 30561 | 30425 | ID=Msa1415920-mRNA-1:cds;Parent=Msa1415920-mRNA-1 |
| tig0024289 | CDS | 31336 | 31422 | 31336 | ID=Msa1415920-mRNA-1:cds;Parent=Msa1415920-mRNA-1 |
| tig0024289 | CDS | 31739 | 32026 | 31739 | ID=Msa1415920-mRNA-1:cds;Parent=Msa1415920-mRNA-1 |
| tig0024289 | three_prime_UTR | 32027 | 32223 | 32027 | ID=Msa1415920-mRNA-1:three_prime_utr;Parent=Msa1415920-mRNA-1 |
| tig0024289 | three_prime_UTR | 32438 | 32578 | 32438 | ID=Msa1415920-mRNA-1:three_prime_utr;Parent=Msa1415920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
