Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165320 | XP_013468466.1 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165320 | sp|Q3EDJ0|AB19I_ARATH | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 9.51e-154 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165320 | A0A072VM53 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027410 | Msa0165320 | 0.998820 | 7.481044e-278 | -8.615850e-47 |
| Msa0165320 | Msa1415920 | 0.829124 | 6.133438e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165320 | MtrunA17_Chr1g0183671 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 605 |
| Msa0165320 | MtrunA17_Chr1g0193051 | 55.431 | 267 | 111 | 5 | 10 | 270 | 6 | 270 | 1.10e-100 | 298 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165320 | AT1G03905.1 | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 9.67e-155 | 434 |
| Msa0165320 | AT5G44110.1 | 74.061 | 293 | 62 | 4 | 8 | 299 | 3 | 282 | 7.82e-150 | 421 |
| Msa0165320 | AT1G03905.3 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0165320 | AT1G03905.2 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0165320 | AT1G03905.4 | 78.070 | 228 | 48 | 2 | 72 | 299 | 1 | 226 | 6.37e-125 | 356 |
| Msa0165320 | AT5G44110.2 | 76.555 | 209 | 44 | 2 | 8 | 215 | 3 | 207 | 1.31e-113 | 327 |
| Msa0165320 | AT5G02270.1 | 57.752 | 258 | 102 | 4 | 8 | 260 | 5 | 260 | 6.64e-104 | 306 |
| Msa0165320 | AT5G02270.2 | 52.817 | 284 | 101 | 5 | 8 | 260 | 5 | 286 | 7.58e-98 | 292 |
| Msa0165320 | AT5G44110.3 | 77.976 | 168 | 32 | 2 | 8 | 174 | 3 | 166 | 7.79e-91 | 270 |
| Msa0165320 | AT5G44110.4 | 80.556 | 144 | 28 | 0 | 72 | 215 | 1 | 144 | 8.15e-83 | 246 |
Find 96 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTAATCTTCCCTTGTTTA+TGG | 0.082124 | 1_4:-45765463 | Msa0165320:three_prime_UTR |
| TGCCATTGTGATTTCGAATT+TGG | 0.083566 | 1_4:+45769454 | None:intergenic |
| TAGTGGTGATCTTGCTTATT+TGG | 0.198378 | 1_4:-45769156 | Msa0165320:CDS |
| AACGAACACGTTAGTGTAAA+TGG | 0.202270 | 1_4:+45769580 | None:intergenic |
| CTTGAGCATTAGATGTATTC+TGG | 0.205818 | 1_4:+45765696 | None:intergenic |
| TGTTACTCGAATGGATTTAT+TGG | 0.213870 | 1_4:-45766264 | Msa0165320:CDS |
| GGCATTTCAGGTTCTCTTGC+TGG | 0.245341 | 1_4:-45766312 | Msa0165320:intron |
| ACTACTAAAAGCTGTTAAAT+TGG | 0.262308 | 1_4:+45765419 | None:intergenic |
| GTAACTATTGAAAGTGTAAT+TGG | 0.265097 | 1_4:+45769490 | None:intergenic |
| AACTACGTTGTTGAAGATTC+TGG | 0.281207 | 1_4:-45769258 | Msa0165320:CDS |
| TTGCTTATTTGGGTGGATCT+TGG | 0.297721 | 1_4:-45769145 | Msa0165320:CDS |
| GGAGAGAGCGACGTGGATTA+TGG | 0.297797 | 1_4:-45769617 | None:intergenic |
| TCAATCCATGATACCTTATA+AGG | 0.305162 | 1_4:+45767085 | None:intergenic |
| AGGTAATCGCACAGAATATA+TGG | 0.307419 | 1_4:+45764052 | None:intergenic |
| GTGGATTATGGTTTATTCAT+AGG | 0.312133 | 1_4:-45769605 | Msa0165320:five_prime_UTR |
| GGGTCTTCTTCATCCTTATA+AGG | 0.319104 | 1_4:-45767098 | Msa0165320:intron |
| TGATTCTGATTAGGAAAATA+TGG | 0.333798 | 1_4:-45764125 | Msa0165320:three_prime_UTR |
| AACTAACCTGTGAATAGCTT+TGG | 0.338548 | 1_4:-45764150 | Msa0165320:three_prime_UTR |
| TCTGTTGAACATATGATATT+CGG | 0.343275 | 1_4:-45767513 | Msa0165320:CDS |
| ACTAACCTGTGAATAGCTTT+GGG | 0.352912 | 1_4:-45764149 | Msa0165320:three_prime_UTR |
| CACCAGCACGAACAATAAAA+AGG | 0.358016 | 1_4:-45764178 | Msa0165320:intron |
| GCTTTGGGGTGATTCTGATT+AGG | 0.364072 | 1_4:-45764134 | Msa0165320:three_prime_UTR |
| AGTGGTGATCTTGCTTATTT+GGG | 0.367794 | 1_4:-45769155 | Msa0165320:CDS |
| GACGAGGAGGCATCTGGATC+CGG | 0.373648 | 1_4:+45769301 | None:intergenic |
| TGCTGTCTGTTGTCGAGTCC+TGG | 0.392760 | 1_4:-45765757 | Msa0165320:CDS |
| GCGTCGAGTGCAAATCTGTT+TGG | 0.394075 | 1_4:-45767119 | Msa0165320:CDS |
| TTAGGAAAATATGGAAGTTA+AGG | 0.396164 | 1_4:-45764116 | Msa0165320:three_prime_UTR |
| GGAGACATGGGCAACTCATT+TGG | 0.399798 | 1_4:-45765855 | Msa0165320:CDS |
| TTGTTGTTGGATGTCGTTGT+AGG | 0.412895 | 1_4:+45769364 | None:intergenic |
| TTCAACCTCCACGTTTCTCC+CGG | 0.419734 | 1_4:-45769320 | Msa0165320:CDS |
| AGAGCGGTGGTTGTTGTTGT+TGG | 0.426946 | 1_4:+45769351 | None:intergenic |
| CGTCGAGTGCAAATCTGTTT+GGG | 0.431328 | 1_4:-45767118 | Msa0165320:CDS |
| TGTAGGAGAATTGCATTCCT+TGG | 0.435035 | 1_4:+45769381 | None:intergenic |
| GCTGTTAAATTGGAGCTTGA+AGG | 0.437197 | 1_4:+45765429 | None:intergenic |
| ATCAACTTGTCTCTCCTGTC+AGG | 0.438091 | 1_4:+45767199 | None:intergenic |
| CTTTGTTTCAGCACGGAGCC+AGG | 0.439414 | 1_4:+45765739 | None:intergenic |
| AGCACCGACGAGGAGGCATC+TGG | 0.446647 | 1_4:+45769295 | None:intergenic |
| CTGTTAAATTGGAGCTTGAA+GGG | 0.447060 | 1_4:+45765430 | None:intergenic |
| TGTAAACTAGAAAGCTTGTA+AGG | 0.448709 | 1_4:-45764084 | Msa0165320:three_prime_UTR |
| CTCGTCGGTGCTAACGGATC+TGG | 0.449071 | 1_4:-45769284 | Msa0165320:CDS |
| CACTCGACGCCGCTGCCCAT+CGG | 0.468540 | 1_4:+45767132 | None:intergenic |
| TCGATAGTATGCCATGTGTC+TGG | 0.475819 | 1_4:+45765637 | None:intergenic |
| GCATTAGATGTATTCTGGAC+AGG | 0.480572 | 1_4:+45765701 | None:intergenic |
| GGATTTATTGGAATTCTTCA+AGG | 0.489781 | 1_4:-45766252 | Msa0165320:CDS |
| TCAGGTTCTCTTGCTGGATG+AGG | 0.494180 | 1_4:-45766306 | Msa0165320:intron |
| TGCCTCCTCGTCGGTGCTAA+CGG | 0.499231 | 1_4:-45769290 | Msa0165320:CDS |
| TCTGCAGTGGCGAATGCATA+AGG | 0.499282 | 1_4:-45767158 | Msa0165320:CDS |
| CCAGGGAGACATTCCACTGC+AGG | 0.508285 | 1_4:-45767544 | Msa0165320:intron |
| TTGGACTCTGATTCCGCTCG+AGG | 0.511444 | 1_4:+45769400 | None:intergenic |
| ACGAGGAGGCATCTGGATCC+GGG | 0.515626 | 1_4:+45769302 | None:intergenic |
| CAGAATACATCTAATGCTCA+AGG | 0.515770 | 1_4:-45765695 | Msa0165320:CDS |
| ACGTTGTTGAAGATTCTGGC+TGG | 0.524614 | 1_4:-45769254 | Msa0165320:CDS |
| CCTGGATGTTGTTACTCGAA+TGG | 0.526845 | 1_4:-45766273 | Msa0165320:CDS |
| GGTGATCTTGCTTATTTGGG+TGG | 0.528094 | 1_4:-45769152 | Msa0165320:CDS |
| TTGAAGGTGTTGATCCTGAC+AGG | 0.537915 | 1_4:-45767213 | Msa0165320:CDS |
| CGTTGTTGAAGATTCTGGCT+GGG | 0.548568 | 1_4:-45769253 | Msa0165320:CDS |
| GATTCTGGCTGGGAAGCATA+TGG | 0.548571 | 1_4:-45769243 | Msa0165320:CDS |
| GCTGGGAAGCATATGGTTGG+AGG | 0.550659 | 1_4:-45769236 | Msa0165320:CDS |
| CGAATGCATAAGGTATCCGA+TGG | 0.557234 | 1_4:-45767148 | Msa0165320:CDS |
| GGAGACGAAGATGAATGAGA+TGG | 0.567285 | 1_4:+45769511 | None:intergenic |
| ATATACAAGAAGGCGAATTG+AGG | 0.569400 | 1_4:-45765829 | Msa0165320:CDS |
| CTTCAAGGAAGAATGTGAGC+AGG | 0.571124 | 1_4:-45766237 | Msa0165320:intron |
| ATCACCCCAAAGCTATTCAC+AGG | 0.572229 | 1_4:+45764144 | None:intergenic |
| TGTTAAATTGGAGCTTGAAG+GGG | 0.573464 | 1_4:+45765431 | None:intergenic |
| AAGATGAATGAGATGGAACC+TGG | 0.577301 | 1_4:+45769518 | None:intergenic |
| ACAGAGAAGTCTCCCTGCAG+TGG | 0.578011 | 1_4:+45767531 | None:intergenic |
| CTCTTCATCATCCAGACACA+TGG | 0.583208 | 1_4:-45765648 | Msa0165320:CDS |
| TGTAAGAATTAATTCGCATA+CGG | 0.586096 | 1_4:-45765557 | Msa0165320:three_prime_UTR |
| TCGAGCGGAATCAGAGTCCA+AGG | 0.594046 | 1_4:-45769398 | Msa0165320:CDS |
| TTTCAAGCTTTGTTTCAGCA+CGG | 0.594104 | 1_4:+45765732 | None:intergenic |
| ATAAGGTATCCGATGGGCAG+CGG | 0.595876 | 1_4:-45767141 | Msa0165320:CDS |
| CTGGCTGGGAAGCATATGGT+TGG | 0.597197 | 1_4:-45769239 | Msa0165320:CDS |
| CAGGGAGACATTCCACTGCA+GGG | 0.606306 | 1_4:-45767543 | Msa0165320:CDS |
| GGATGAGGTAACAGTTGACC+TGG | 0.608537 | 1_4:-45766291 | Msa0165320:CDS |
| CATTTGGCATATATACAAGA+AGG | 0.608932 | 1_4:-45765839 | Msa0165320:CDS |
| GGATCCAGATGCCTCCTCGT+CGG | 0.614264 | 1_4:-45769299 | Msa0165320:CDS |
| AGGACTCGACAACAGACAGC+AGG | 0.618187 | 1_4:+45765759 | None:intergenic |
| CCATTCGAGTAACAACATCC+AGG | 0.626459 | 1_4:+45766273 | None:intergenic |
| ATCCGTTAGCACCGACGAGG+AGG | 0.628749 | 1_4:+45769288 | None:intergenic |
| AAGCTGCGTATCATGAAAAG+CGG | 0.639042 | 1_4:+45769184 | None:intergenic |
| TTGAAATCGACGAAGAGCGG+TGG | 0.643066 | 1_4:+45769338 | None:intergenic |
| GGATTACATAGCCATAAACA+AGG | 0.643911 | 1_4:+45765452 | None:intergenic |
| AGAATACATCTAATGCTCAA+GGG | 0.644371 | 1_4:-45765694 | Msa0165320:CDS |
| ATCTGGATCCGGGAGAAACG+TGG | 0.646214 | 1_4:+45769312 | None:intergenic |
| GATAATGAAGATTCCTCGAG+CGG | 0.647869 | 1_4:-45769413 | Msa0165320:CDS |
| TTCCAAATTCGAAATCACAA+TGG | 0.650720 | 1_4:-45769456 | Msa0165320:exon |
| CTAACCTGTGAATAGCTTTG+GGG | 0.651569 | 1_4:-45764148 | Msa0165320:three_prime_UTR |
| AGGTTGAAATCGACGAAGAG+CGG | 0.661441 | 1_4:+45769335 | None:intergenic |
| GATACGCAGCTTGTTTGTAG+TGG | 0.661885 | 1_4:-45769173 | Msa0165320:CDS |
| TGCTTGATATAGATCTGCAG+TGG | 0.665729 | 1_4:-45767171 | Msa0165320:CDS |
| GAATGCATAAGGTATCCGAT+GGG | 0.681230 | 1_4:-45767147 | Msa0165320:CDS |
| GATTACATAGCCATAAACAA+GGG | 0.695374 | 1_4:+45765453 | None:intergenic |
| GTTGAACATATGATATTCGG+TGG | 0.700058 | 1_4:-45767510 | Msa0165320:intron |
| CAGATCCGTTAGCACCGACG+AGG | 0.705355 | 1_4:+45769285 | None:intergenic |
| TGGATCCGGGAGAAACGTGG+AGG | 0.721479 | 1_4:+45769315 | None:intergenic |
| TGTCTGGATGATGAAGAGAA+CGG | 0.762534 | 1_4:+45765653 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAATTATAAATTGAAAAA+TGG | + | chr1_4:45766225-45766244 | None:intergenic | 10.0% |
| !! | GTAATAAAAAAAAGTTAATT+TGG | + | chr1_4:45766807-45766826 | None:intergenic | 10.0% |
| !! | ATAATATATATTTATGTTAC+TGG | + | chr1_4:45768393-45768412 | None:intergenic | 10.0% |
| !!! | AATTTTTTGTTTAATGATTT+AGG | + | chr1_4:45768843-45768862 | None:intergenic | 10.0% |
| !! | AACTTATGAATTAACATAAA+CGG | + | chr1_4:45764862-45764881 | None:intergenic | 15.0% |
| !!! | ATTTTATGATATACTACTAA+TGG | + | chr1_4:45765022-45765041 | None:intergenic | 15.0% |
| !! | TTTATATAGGTATTAGTAAT+AGG | + | chr1_4:45765558-45765577 | None:intergenic | 15.0% |
| !! | AATAAATATTGTCCTTAATA+GGG | + | chr1_4:45766293-45766312 | None:intergenic | 15.0% |
| !! | TCAATATGATATCTAATTAT+TGG | - | chr1_4:45767220-45767239 | Msa0165320:intron | 15.0% |
| !!! | AAAAATTGTCTTTTTTAGTT+AGG | + | chr1_4:45767648-45767667 | None:intergenic | 15.0% |
| !!! | AAATTATTTTCATTTGCAAT+TGG | + | chr1_4:45768066-45768085 | None:intergenic | 15.0% |
| !!! | TATATAATTTTTTTTTCCCT+TGG | - | chr1_4:45768410-45768429 | Msa0165320:intron | 15.0% |
| !! | CAAAAATAAGTTAATCCAAA+CGG | + | chr1_4:45764820-45764839 | None:intergenic | 20.0% |
| !! | ATAAGCTGAAAATAACTTTA+TGG | - | chr1_4:45765095-45765114 | Msa0165320:intron | 20.0% |
| !! | TCAATTCAAAGTAAATACAA+AGG | + | chr1_4:45765656-45765675 | None:intergenic | 20.0% |
| !!! | GATTGATTTACTTTAAAGTT+TGG | - | chr1_4:45765815-45765834 | Msa0165320:CDS | 20.0% |
| !! | AACGACATTAATATTTGAAA+AGG | + | chr1_4:45766090-45766109 | None:intergenic | 20.0% |
| !! | CAATAAATATTGTCCTTAAT+AGG | + | chr1_4:45766294-45766313 | None:intergenic | 20.0% |
| !!! | TGTATATTGTGAGTTTTTAT+TGG | + | chr1_4:45766880-45766899 | None:intergenic | 20.0% |
| !! | TAAGATAATAGCACAATATT+TGG | + | chr1_4:45766925-45766944 | None:intergenic | 20.0% |
| !! | AGAAAAAATATCAGATGTTA+AGG | - | chr1_4:45767861-45767880 | Msa0165320:intron | 20.0% |
| !!! | AACCTAGCTAAATTTTTATT+TGG | + | chr1_4:45768152-45768171 | None:intergenic | 20.0% |
| !! | ACTTGATATATGTTTAATCA+AGG | - | chr1_4:45768303-45768322 | Msa0165320:intron | 20.0% |
| !!! | AACCATTCTCTAAATTTTAA+TGG | - | chr1_4:45768791-45768810 | Msa0165320:intron | 20.0% |
| !! | TAAATAATGAAACTAACATG+AGG | + | chr1_4:45769097-45769116 | None:intergenic | 20.0% |
| !!! | GTTTCATTATTTAATTTTCC+TGG | - | chr1_4:45769104-45769123 | Msa0165320:intron | 20.0% |
| !! | ATCAATTGAAATTTGAAAGA+TGG | - | chr1_4:45769142-45769161 | Msa0165320:CDS | 20.0% |
| !!! | ATGTTCTCTATTTTATCTAA+TGG | - | chr1_4:45769407-45769426 | Msa0165320:CDS | 20.0% |
| ! | ACTAGAAAAACTTAAAAACC+AGG | - | chr1_4:45764126-45764145 | Msa0165320:three_prime_UTR | 25.0% |
| !! | GTAACTATTGAAAGTGTAAT+TGG | + | chr1_4:45764175-45764194 | None:intergenic | 25.0% |
| !!! | TTCTCATTTTTAATGTCGTT+AGG | - | chr1_4:45764583-45764602 | Msa0165320:intron | 25.0% |
| !! | TTTTAATGTCGTTAGGAAAT+AGG | - | chr1_4:45764590-45764609 | Msa0165320:intron | 25.0% |
| ! | TTTAATGTCGTTAGGAAATA+GGG | - | chr1_4:45764591-45764610 | Msa0165320:intron | 25.0% |
| !! | AGGATGCTTTTCATATATTA+TGG | - | chr1_4:45764770-45764789 | Msa0165320:intron | 25.0% |
| ! | AAGGTAGTTAATGAAAAAAC+AGG | + | chr1_4:45764913-45764932 | None:intergenic | 25.0% |
| !! | TTGGCTTATTATTTAGCTTA+TGG | + | chr1_4:45764989-45765008 | None:intergenic | 25.0% |
| !! | GGACTGTTTAATAGATTTTA+TGG | + | chr1_4:45765139-45765158 | None:intergenic | 25.0% |
| ! | AATAAGCCGAAAACAAATTA+TGG | - | chr1_4:45765179-45765198 | Msa0165320:intron | 25.0% |
| !!! | ACATGTCCATAATTTGTTTT+CGG | + | chr1_4:45765188-45765207 | None:intergenic | 25.0% |
| !! | ATCTTGTTTAGTAGATCTTA+TGG | + | chr1_4:45765223-45765242 | None:intergenic | 25.0% |
| ! | ATTAAGAAGGAATAGAAACA+GGG | + | chr1_4:45765463-45765482 | None:intergenic | 25.0% |
| !! | TGTTTCTATTCCTTCTTAAT+GGG | - | chr1_4:45765463-45765482 | Msa0165320:three_prime_UTR | 25.0% |
| ! | GGAAGAGTTATACTTTATAT+AGG | + | chr1_4:45765571-45765590 | None:intergenic | 25.0% |
| !! | GTTTTCAAATTCTTAAGACA+AGG | - | chr1_4:45765603-45765622 | Msa0165320:three_prime_UTR | 25.0% |
| ! | TAAATGTTCCTAAAAAGTGA+GGG | + | chr1_4:45765687-45765706 | None:intergenic | 25.0% |
| ! | TTAAATGTTCCTAAAAAGTG+AGG | + | chr1_4:45765688-45765707 | None:intergenic | 25.0% |
| !!! | TCACTTTTTAGGAACATTTA+AGG | - | chr1_4:45765687-45765706 | Msa0165320:CDS | 25.0% |
| !!! | AACATTTAAGGCAAACATTT+TGG | - | chr1_4:45765699-45765718 | Msa0165320:CDS | 25.0% |
| !! | AAATTTTACGAGACTAAATG+TGG | - | chr1_4:45765730-45765749 | Msa0165320:CDS | 25.0% |
| !! | AATTTTACGAGACTAAATGT+GGG | - | chr1_4:45765731-45765750 | Msa0165320:CDS | 25.0% |
| ! | AGTAAATCAATCTATAGTTC+TGG | + | chr1_4:45765807-45765826 | None:intergenic | 25.0% |
| ! | TCTGTTGAACATATGATATT+CGG | - | chr1_4:45766149-45766168 | Msa0165320:intron | 25.0% |
| ! | AGTATATAAAGTTCAAACTC+AGG | + | chr1_4:45766668-45766687 | None:intergenic | 25.0% |
| ! | GAACTTTATATACTTTATCC+TGG | - | chr1_4:45766674-45766693 | Msa0165320:intron | 25.0% |
| ! | ACTAGAATTCAGATTAAAGA+GGG | + | chr1_4:45766724-45766743 | None:intergenic | 25.0% |
| ! | TACTAGAATTCAGATTAAAG+AGG | + | chr1_4:45766725-45766744 | None:intergenic | 25.0% |
| ! | TTTATGACAATTTGTAGACT+AGG | - | chr1_4:45767083-45767102 | Msa0165320:intron | 25.0% |
| ! | TTATGACAATTTGTAGACTA+GGG | - | chr1_4:45767084-45767103 | Msa0165320:intron | 25.0% |
| ! | TAAATTTGAGAAAACTGCAA+CGG | - | chr1_4:45767492-45767511 | Msa0165320:intron | 25.0% |
| ! | TGTAAGAATTAATTCGCATA+CGG | - | chr1_4:45768105-45768124 | Msa0165320:intron | 25.0% |
| ! | CACCAAATAAAAATTTAGCT+AGG | - | chr1_4:45768147-45768166 | Msa0165320:intron | 25.0% |
| ! | ACTACTAAAAGCTGTTAAAT+TGG | + | chr1_4:45768246-45768265 | None:intergenic | 25.0% |
| !! | GCTTTTAGTAGTTTTCTTTT+TGG | - | chr1_4:45768254-45768273 | Msa0165320:intron | 25.0% |
| ! | AATGTACAATAAAATCACGT+GGG | - | chr1_4:45768356-45768375 | Msa0165320:intron | 25.0% |
| ! | CTTAATCAAATGGTTAGAAA+AGG | + | chr1_4:45768488-45768507 | None:intergenic | 25.0% |
| ! | AAGATGAATAGTTGTTTGAA+GGG | + | chr1_4:45768631-45768650 | None:intergenic | 25.0% |
| ! | TGCCATTAAAATTTAGAGAA+TGG | + | chr1_4:45768796-45768815 | None:intergenic | 25.0% |
| !!! | AAAGTTACAAGCTTTGTTAA+TGG | - | chr1_4:45768960-45768979 | Msa0165320:intron | 25.0% |
| !!! | AAGTTACAAGCTTTGTTAAT+GGG | - | chr1_4:45768961-45768980 | Msa0165320:intron | 25.0% |
| !!! | GATTTGGTTTTTTTAGTTTG+GGG | + | chr1_4:45769020-45769039 | None:intergenic | 25.0% |
| !!! | GGATTTGGTTTTTTTAGTTT+GGG | + | chr1_4:45769021-45769040 | None:intergenic | 25.0% |
| !!! | TGGATTTGGTTTTTTTAGTT+TGG | + | chr1_4:45769022-45769041 | None:intergenic | 25.0% |
| ! | AAAAAACCAAATCCAATCTA+AGG | - | chr1_4:45769027-45769046 | Msa0165320:intron | 25.0% |
| ! | AAAAAACCTTAGATTGGATT+TGG | + | chr1_4:45769036-45769055 | None:intergenic | 25.0% |
| !! | CAATTGGTTATTGAGATTTT+GGG | - | chr1_4:45769070-45769089 | Msa0165320:intron | 25.0% |
| ! | AATATTTACTTTCCTATGGT+GGG | - | chr1_4:45769432-45769451 | Msa0165320:CDS | 25.0% |
| ! | TGATTCTGATTAGGAAAATA+TGG | - | chr1_4:45769537-45769556 | Msa0165320:five_prime_UTR | 25.0% |
| ! | TTAGGAAAATATGGAAGTTA+AGG | - | chr1_4:45769546-45769565 | Msa0165320:five_prime_UTR | 25.0% |
| TTCCAAATTCGAAATCACAA+TGG | - | chr1_4:45764206-45764225 | Msa0165320:intron | 30.0% | |
| ! | ATTCATAATTTTGTGTCGAG+TGG | - | chr1_4:45764651-45764670 | Msa0165320:intron | 30.0% |
| GATTACGCACTGTAATTTAT+TGG | - | chr1_4:45764739-45764758 | Msa0165320:intron | 30.0% | |
| CAGCTTAATTAAGCATTCTA+GGG | - | chr1_4:45764794-45764813 | Msa0165320:intron | 30.0% | |
| AAATAATAAGCCAATCCAGA+CGG | - | chr1_4:45764995-45765014 | Msa0165320:intron | 30.0% | |
| TAGAATTAGGACTTGTATGT+TGG | - | chr1_4:45765300-45765319 | Msa0165320:intron | 30.0% | |
| AGAATTAGGACTTGTATGTT+GGG | - | chr1_4:45765301-45765320 | Msa0165320:intron | 30.0% | |
| ! | TTTAAGCTCTGATAATACGT+TGG | - | chr1_4:45765370-45765389 | Msa0165320:intron | 30.0% |
| ! | TTAAGCTCTGATAATACGTT+GGG | - | chr1_4:45765371-45765390 | Msa0165320:intron | 30.0% |
| CATTAAGAAGGAATAGAAAC+AGG | + | chr1_4:45765464-45765483 | None:intergenic | 30.0% | |
| !! | CTGTTTCTATTCCTTCTTAA+TGG | - | chr1_4:45765462-45765481 | Msa0165320:three_prime_UTR | 30.0% |
| AGTAAAAACTCCCATTAAGA+AGG | + | chr1_4:45765476-45765495 | None:intergenic | 30.0% | |
| CTGATATAATCTTAGTTTCG+AGG | - | chr1_4:45765494-45765513 | Msa0165320:three_prime_UTR | 30.0% | |
| ATAATCTTAGTTTCGAGGAT+AGG | - | chr1_4:45765499-45765518 | Msa0165320:three_prime_UTR | 30.0% | |
| AGTATAACTCTTCCAAAAGT+AGG | - | chr1_4:45765577-45765596 | Msa0165320:three_prime_UTR | 30.0% | |
| GTATAACTCTTCCAAAAGTA+GGG | - | chr1_4:45765578-45765597 | Msa0165320:three_prime_UTR | 30.0% | |
| ACACATGTACAAAACATAGT+GGG | - | chr1_4:45765858-45765877 | Msa0165320:CDS | 30.0% | |
| ! | AGCTTGATGATCATAAAACA+CGG | - | chr1_4:45765889-45765908 | Msa0165320:CDS | 30.0% |
| AAAGGAATTGATCAAAGCAA+AGG | + | chr1_4:45766072-45766091 | None:intergenic | 30.0% | |
| TTAGATAGCCAAACATTACA+TGG | + | chr1_4:45766368-45766387 | None:intergenic | 30.0% | |
| !! | CTTAGTTTTTCTATGCATCA+GGG | + | chr1_4:45766408-45766427 | None:intergenic | 30.0% |
| !! | TCTTAGTTTTTCTATGCATC+AGG | + | chr1_4:45766409-45766428 | None:intergenic | 30.0% |
| ! | TTCATCCTTATAAGGTATCA+TGG | - | chr1_4:45766572-45766591 | Msa0165320:intron | 30.0% |
| TCAATCCATGATACCTTATA+AGG | + | chr1_4:45766580-45766599 | None:intergenic | 30.0% | |
| !! | TCTTTTATTTCGAGAAAAGG+TGG | + | chr1_4:45766700-45766719 | None:intergenic | 30.0% |
| !! | GGATCTTTTATTTCGAGAAA+AGG | + | chr1_4:45766703-45766722 | None:intergenic | 30.0% |
| ATAGCACAATATTTGGCTAT+TGG | + | chr1_4:45766918-45766937 | None:intergenic | 30.0% | |
| ! | ATGCAGTAAATTGAAGTGTT+TGG | - | chr1_4:45767036-45767055 | Msa0165320:intron | 30.0% |
| !!! | AAAAAGAGCTTTTAGCTTGA+TGG | - | chr1_4:45767114-45767133 | Msa0165320:CDS | 30.0% |
| ATTTCAACAAGAATTACTCC+TGG | - | chr1_4:45767184-45767203 | Msa0165320:CDS | 30.0% | |
| ! | TGTTACTCGAATGGATTTAT+TGG | - | chr1_4:45767398-45767417 | Msa0165320:intron | 30.0% |
| GGATTTATTGGAATTCTTCA+AGG | - | chr1_4:45767410-45767429 | Msa0165320:intron | 30.0% | |
| AAATTTGAGAAAACTGCAAC+GGG | - | chr1_4:45767493-45767512 | Msa0165320:intron | 30.0% | |
| ! | TATGCAACTCACATTTTTGA+TGG | - | chr1_4:45767781-45767800 | Msa0165320:intron | 30.0% |
| CATTTGGCATATATACAAGA+AGG | - | chr1_4:45767823-45767842 | Msa0165320:intron | 30.0% | |
| AGAATACATCTAATGCTCAA+GGG | - | chr1_4:45767968-45767987 | Msa0165320:intron | 30.0% | |
| GATTACATAGCCATAAACAA+GGG | + | chr1_4:45768212-45768231 | None:intergenic | 30.0% | |
| CAATGTACAATAAAATCACG+TGG | - | chr1_4:45768355-45768374 | Msa0165320:intron | 30.0% | |
| ATGTACAATAAAATCACGTG+GGG | - | chr1_4:45768357-45768376 | Msa0165320:intron | 30.0% | |
| !!! | TTTTTTCCCTTGGTTACAAA+CGG | - | chr1_4:45768420-45768439 | Msa0165320:intron | 30.0% |
| ATAGACTATGATAACAATGG+TGG | + | chr1_4:45768516-45768535 | None:intergenic | 30.0% | |
| CAGATAGACTATGATAACAA+TGG | + | chr1_4:45768519-45768538 | None:intergenic | 30.0% | |
| GAAGATGAATAGTTGTTTGA+AGG | + | chr1_4:45768632-45768651 | None:intergenic | 30.0% | |
| !! | TTTAACAATGAAGCTTGTTG+TGG | + | chr1_4:45768771-45768790 | None:intergenic | 30.0% |
| !! | AGTTACAAGCTTTGTTAATG+GGG | - | chr1_4:45768962-45768981 | Msa0165320:intron | 30.0% |
| ! | GCAATTGGTTATTGAGATTT+TGG | - | chr1_4:45769069-45769088 | Msa0165320:intron | 30.0% |
| GATAAAAAATTCACAGATCC+AGG | + | chr1_4:45769125-45769144 | None:intergenic | 30.0% | |
| TACTCGTGAAACAAAAAACA+TGG | + | chr1_4:45769302-45769321 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTGTTTCACGAGT+AGG | - | chr1_4:45769301-45769320 | Msa0165320:CDS | 30.0% |
| GGTCAATATTTACTTTCCTA+TGG | - | chr1_4:45769428-45769447 | Msa0165320:CDS | 30.0% | |
| CAATATTTACTTTCCTATGG+TGG | - | chr1_4:45769431-45769450 | Msa0165320:CDS | 30.0% | |
| TGTAAACTAGAAAGCTTGTA+AGG | - | chr1_4:45769578-45769597 | Msa0165320:five_prime_UTR | 30.0% | |
| AACGAACACGTTAGTGTAAA+TGG | + | chr1_4:45764085-45764104 | None:intergenic | 35.0% | |
| TGCCATTGTGATTTCGAATT+TGG | + | chr1_4:45764211-45764230 | None:intergenic | 35.0% | |
| AACTACGTTGTTGAAGATTC+TGG | - | chr1_4:45764404-45764423 | Msa0165320:intron | 35.0% | |
| TAGTGGTGATCTTGCTTATT+TGG | - | chr1_4:45764506-45764525 | Msa0165320:intron | 35.0% | |
| AGTGGTGATCTTGCTTATTT+GGG | - | chr1_4:45764507-45764526 | Msa0165320:intron | 35.0% | |
| GAGTGGTTAAAATGAAATGC+TGG | - | chr1_4:45764668-45764687 | Msa0165320:intron | 35.0% | |
| ! | GTAATTTATTGGTGACTGTG+AGG | - | chr1_4:45764750-45764769 | Msa0165320:intron | 35.0% |
| CCTAGAATGCTTAATTAAGC+TGG | + | chr1_4:45764796-45764815 | None:intergenic | 35.0% | |
| CCAGCTTAATTAAGCATTCT+AGG | - | chr1_4:45764793-45764812 | Msa0165320:intron | 35.0% | |
| TAACTACCTTGACAAGCTTA+TGG | - | chr1_4:45764923-45764942 | Msa0165320:intron | 35.0% | |
| ! | ATTTTGCCATAAGCTTGTCA+AGG | + | chr1_4:45764932-45764951 | None:intergenic | 35.0% |
| AATAATAAGCCAATCCAGAC+GGG | - | chr1_4:45764996-45765015 | Msa0165320:intron | 35.0% | |
| ! | AACCATAAGTAGCTCTATCT+TGG | - | chr1_4:45765060-45765079 | Msa0165320:intron | 35.0% |
| TTCCAAGATAGAGCTACTTA+TGG | + | chr1_4:45765065-45765084 | None:intergenic | 35.0% | |
| AGCTCTATCTTGGAAATTGA+TGG | - | chr1_4:45765070-45765089 | Msa0165320:intron | 35.0% | |
| AAATACGTATAGAGTCTGCT+TGG | + | chr1_4:45765261-45765280 | None:intergenic | 35.0% | |
| AAGCAGACTCTATACGTATT+TGG | - | chr1_4:45765260-45765279 | Msa0165320:intron | 35.0% | |
| !! | AATTCTAAAGTGTGCAAGCA+TGG | + | chr1_4:45765287-45765306 | None:intergenic | 35.0% |
| !! | TGCTTGCACACTTTAGAATT+AGG | - | chr1_4:45765287-45765306 | Msa0165320:intron | 35.0% |
| ! | TTTGAAAACCACCCTACTTT+TGG | + | chr1_4:45765592-45765611 | None:intergenic | 35.0% |
| !!! | TTATGTTGCCCTCACTTTTT+AGG | - | chr1_4:45765676-45765695 | Msa0165320:CDS | 35.0% |
| TCTGGCTAAGAGAACATAAA+GGG | + | chr1_4:45765789-45765808 | None:intergenic | 35.0% | |
| ! | TTCTGGCTAAGAGAACATAA+AGG | + | chr1_4:45765790-45765809 | None:intergenic | 35.0% |
| ! | CACTATGTTTTGTACATGTG+TGG | + | chr1_4:45765859-45765878 | None:intergenic | 35.0% |
| CACACATGTACAAAACATAG+TGG | - | chr1_4:45765857-45765876 | Msa0165320:CDS | 35.0% | |
| ! | TTGATGATCATAAAACACGG+TGG | - | chr1_4:45765892-45765911 | Msa0165320:CDS | 35.0% |
| GAAAGCTACTAGAGATCTAA+GGG | + | chr1_4:45765929-45765948 | None:intergenic | 35.0% | |
| AGAAAGCTACTAGAGATCTA+AGG | + | chr1_4:45765930-45765949 | None:intergenic | 35.0% | |
| ! | TAGCTGAGATTTTGTGTTTG+TGG | - | chr1_4:45765992-45766011 | Msa0165320:intron | 35.0% |
| GTTGAACATATGATATTCGG+TGG | - | chr1_4:45766152-45766171 | Msa0165320:intron | 35.0% | |
| ! | AACATATGATATTCGGTGGT+GGG | - | chr1_4:45766156-45766175 | Msa0165320:intron | 35.0% |
| AAACTAGTCATACCATAGCA+TGG | - | chr1_4:45766252-45766271 | Msa0165320:CDS | 35.0% | |
| CCTTAATAGGGTTTCATTGA+AGG | + | chr1_4:45766281-45766300 | None:intergenic | 35.0% | |
| CCTTCAATGAAACCCTATTA+AGG | - | chr1_4:45766278-45766297 | Msa0165320:CDS | 35.0% | |
| ! | ATCATGGATTGAATAGCCTA+AGG | - | chr1_4:45766588-45766607 | Msa0165320:intron | 35.0% |
| ATGTGGTAGTTATGTTGTTG+TGG | - | chr1_4:45766618-45766637 | Msa0165320:intron | 35.0% | |
| AGCATACAAATATACAGAGC+TGG | + | chr1_4:45767457-45767476 | None:intergenic | 35.0% | |
| ! | TATCATCCTGTTTTGCATTG+GGG | + | chr1_4:45767523-45767542 | None:intergenic | 35.0% |
| ! | CTATCATCCTGTTTTGCATT+GGG | + | chr1_4:45767524-45767543 | None:intergenic | 35.0% |
| ! | ACTATCATCCTGTTTTGCAT+TGG | + | chr1_4:45767525-45767544 | None:intergenic | 35.0% |
| AGTTGATCCTAGTTGGAAAT+AGG | - | chr1_4:45767542-45767561 | Msa0165320:CDS | 35.0% | |
| GTTGATCCTAGTTGGAAATA+GGG | - | chr1_4:45767543-45767562 | Msa0165320:CDS | 35.0% | |
| ! | CTTTTACCCTATTTCCAACT+AGG | + | chr1_4:45767552-45767571 | None:intergenic | 35.0% |
| TTTAGTTAGGATTCATGAGC+AGG | + | chr1_4:45767635-45767654 | None:intergenic | 35.0% | |
| GTAGCTTCTCTCTACAAAAA+AGG | + | chr1_4:45767754-45767773 | None:intergenic | 35.0% | |
| !! | AACTCACATTTTTGATGGAC+TGG | - | chr1_4:45767786-45767805 | Msa0165320:intron | 35.0% |
| ATATACAAGAAGGCGAATTG+AGG | - | chr1_4:45767833-45767852 | Msa0165320:intron | 35.0% | |
| !! | TTTCAAGCTTTGTTTCAGCA+CGG | + | chr1_4:45767933-45767952 | None:intergenic | 35.0% |
| CTTGAGCATTAGATGTATTC+TGG | + | chr1_4:45767969-45767988 | None:intergenic | 35.0% | |
| CAGAATACATCTAATGCTCA+AGG | - | chr1_4:45767967-45767986 | Msa0165320:intron | 35.0% | |
| ! | CTGTAATCTTCCCTTGTTTA+TGG | - | chr1_4:45768199-45768218 | Msa0165320:intron | 35.0% |
| GGATTACATAGCCATAAACA+AGG | + | chr1_4:45768213-45768232 | None:intergenic | 35.0% | |
| TGTTAAATTGGAGCTTGAAG+GGG | + | chr1_4:45768234-45768253 | None:intergenic | 35.0% | |
| CTGTTAAATTGGAGCTTGAA+GGG | + | chr1_4:45768235-45768254 | None:intergenic | 35.0% | |
| ! | TTTTTCCCTTGGTTACAAAC+GGG | - | chr1_4:45768421-45768440 | Msa0165320:intron | 35.0% |
| GGTGGTACTACTTAATCAAA+TGG | + | chr1_4:45768498-45768517 | None:intergenic | 35.0% | |
| CTCAGTTTATTATGTCACGA+TGG | - | chr1_4:45768571-45768590 | Msa0165320:intron | 35.0% | |
| AACTTGTAGGAAGAGAAGAT+TGG | + | chr1_4:45768698-45768717 | None:intergenic | 35.0% | |
| ! | TGTTCTAGATCTCAACTTGT+AGG | + | chr1_4:45768711-45768730 | None:intergenic | 35.0% |
| AACAAGAACAGATTCGAATC+TGG | - | chr1_4:45768738-45768757 | Msa0165320:intron | 35.0% | |
| AGGAAGCTATCAAAGACAAA+AGG | + | chr1_4:45769260-45769279 | None:intergenic | 35.0% | |
| AACTAACCTGTGAATAGCTT+TGG | - | chr1_4:45769512-45769531 | Msa0165320:five_prime_UTR | 35.0% | |
| ACTAACCTGTGAATAGCTTT+GGG | - | chr1_4:45769513-45769532 | Msa0165320:five_prime_UTR | 35.0% | |
| AAGATGAATGAGATGGAACC+TGG | + | chr1_4:45764147-45764166 | None:intergenic | 40.0% | |
| GATAATGAAGATTCCTCGAG+CGG | - | chr1_4:45764249-45764268 | Msa0165320:intron | 40.0% | |
| TGTAGGAGAATTGCATTCCT+TGG | + | chr1_4:45764284-45764303 | None:intergenic | 40.0% | |
| ! | TTGTTGTTGGATGTCGTTGT+AGG | + | chr1_4:45764301-45764320 | None:intergenic | 40.0% |
| AAGCTGCGTATCATGAAAAG+CGG | + | chr1_4:45764481-45764500 | None:intergenic | 40.0% | |
| TTGCTTATTTGGGTGGATCT+TGG | - | chr1_4:45764517-45764536 | Msa0165320:intron | 40.0% | |
| GGATCTTGGAGTAAAAACGT+TGG | - | chr1_4:45764531-45764550 | Msa0165320:intron | 40.0% | |
| TGTCGTTAGGAAATAGGGTT+AGG | - | chr1_4:45764596-45764615 | Msa0165320:intron | 40.0% | |
| !!! | GGTTTCGCTTTTTTCGCATT+CGG | - | chr1_4:45764617-45764636 | Msa0165320:intron | 40.0% |
| TTCCTAGCATAAGCACTAGT+GGG | + | chr1_4:45765160-45765179 | None:intergenic | 40.0% | |
| TTTCCTAGCATAAGCACTAG+TGG | + | chr1_4:45765161-45765180 | None:intergenic | 40.0% | |
| AAACCTCATACACTAAGTGC+TGG | + | chr1_4:45765352-45765371 | None:intergenic | 40.0% | |
| TCTGATAATACGTTGGGACT+TGG | - | chr1_4:45765377-45765396 | Msa0165320:intron | 40.0% | |
| CTGATAATACGTTGGGACTT+GGG | - | chr1_4:45765378-45765397 | Msa0165320:intron | 40.0% | |
| AGGAATAGAAACAGGGTCAA+GGG | + | chr1_4:45765456-45765475 | None:intergenic | 40.0% | |
| AAGGAATAGAAACAGGGTCA+AGG | + | chr1_4:45765457-45765476 | None:intergenic | 40.0% | |
| TAACTCTTCCAAAAGTAGGG+TGG | - | chr1_4:45765581-45765600 | Msa0165320:three_prime_UTR | 40.0% | |
| ! | TAATGTCGTTGCTGTTATCC+AGG | - | chr1_4:45766100-45766119 | Msa0165320:intron | 40.0% |
| ! | AATGTCGTTGCTGTTATCCA+GGG | - | chr1_4:45766101-45766120 | Msa0165320:intron | 40.0% |
| ! | GAACATATGATATTCGGTGG+TGG | - | chr1_4:45766155-45766174 | Msa0165320:intron | 40.0% |
| ! | TATATACAAGCGTTGCATGC+AGG | - | chr1_4:45766340-45766359 | Msa0165320:intron | 40.0% |
| TGCAGGTTCCATGTAATGTT+TGG | - | chr1_4:45766357-45766376 | Msa0165320:intron | 40.0% | |
| !! | CTTCTGCTTTTGACAGTTGA+AGG | - | chr1_4:45766433-45766452 | Msa0165320:intron | 40.0% |
| TGCTTGATATAGATCTGCAG+TGG | - | chr1_4:45766491-45766510 | Msa0165320:intron | 40.0% | |
| ! | GAATGCATAAGGTATCCGAT+GGG | - | chr1_4:45766515-45766534 | Msa0165320:intron | 40.0% |
| GGGTCTTCTTCATCCTTATA+AGG | - | chr1_4:45766564-45766583 | Msa0165320:intron | 40.0% | |
| TAGCCTAAGGAATTTGCATG+TGG | - | chr1_4:45766601-45766620 | Msa0165320:intron | 40.0% | |
| CTACCACATGCAAATTCCTT+AGG | + | chr1_4:45766607-45766626 | None:intergenic | 40.0% | |
| ATGTTGTTGTGGACAATGTC+AGG | - | chr1_4:45766629-45766648 | Msa0165320:intron | 40.0% | |
| TGTTGTTGTGGACAATGTCA+GGG | - | chr1_4:45766630-45766649 | Msa0165320:intron | 40.0% | |
| ATTGAACATCTGCTTACTCC+AGG | + | chr1_4:45767205-45767224 | None:intergenic | 40.0% | |
| ACTGTAGTGTAACCCTTGAT+TGG | - | chr1_4:45767329-45767348 | Msa0165320:intron | 40.0% | |
| TAACCCTTGATTGGCATTTC+AGG | - | chr1_4:45767338-45767357 | Msa0165320:intron | 40.0% | |
| GAACCTGAAATGCCAATCAA+GGG | + | chr1_4:45767344-45767363 | None:intergenic | 40.0% | |
| AGAACCTGAAATGCCAATCA+AGG | + | chr1_4:45767345-45767364 | None:intergenic | 40.0% | |
| GGATGATAGTTGATCCTAGT+TGG | - | chr1_4:45767535-45767554 | Msa0165320:CDS | 40.0% | |
| ! | TAAGCCTTTTTCCACCTAGT+GGG | - | chr1_4:45767579-45767598 | Msa0165320:intron | 40.0% |
| TTCATATAACCAACCCCACT+AGG | + | chr1_4:45767596-45767615 | None:intergenic | 40.0% | |
| TAGGATTCATGAGCAGGTTA+TGG | + | chr1_4:45767629-45767648 | None:intergenic | 40.0% | |
| !!! | TTTTTGATGGACTGGAGACA+TGG | - | chr1_4:45767794-45767813 | Msa0165320:intron | 40.0% |
| !!! | TTTTGATGGACTGGAGACAT+GGG | - | chr1_4:45767795-45767814 | Msa0165320:intron | 40.0% |
| GCATTAGATGTATTCTGGAC+AGG | + | chr1_4:45767964-45767983 | None:intergenic | 40.0% | |
| TGTCTGGATGATGAAGAGAA+CGG | + | chr1_4:45768012-45768031 | None:intergenic | 40.0% | |
| GCTGTTAAATTGGAGCTTGA+AGG | + | chr1_4:45768236-45768255 | None:intergenic | 40.0% | |
| GTTAGAAAAGGACTTTCCCA+TGG | + | chr1_4:45768476-45768495 | None:intergenic | 40.0% | |
| TGAAGAGAAACACATGTCTG+TGG | + | chr1_4:45768867-45768886 | None:intergenic | 40.0% | |
| GTTTGGGGAATTGAGTTCAA+GGG | + | chr1_4:45769005-45769024 | None:intergenic | 40.0% | |
| AGTTTGGGGAATTGAGTTCA+AGG | + | chr1_4:45769006-45769025 | None:intergenic | 40.0% | |
| ! | TGGTGTTAAGCAAGCATAAG+AGG | - | chr1_4:45769162-45769181 | Msa0165320:CDS | 40.0% |
| TAAGCAAGCATAAGAGGTTG+TGG | - | chr1_4:45769168-45769187 | Msa0165320:CDS | 40.0% | |
| ! | CAGCTCTGATGTGTTTAAAC+AGG | - | chr1_4:45769193-45769212 | Msa0165320:CDS | 40.0% |
| TTAAACAGGAAGCAGACTCT+TGG | - | chr1_4:45769207-45769226 | Msa0165320:CDS | 40.0% | |
| ! | GTTCTTTTCTCAGAAGCTCT+AGG | + | chr1_4:45769280-45769299 | None:intergenic | 40.0% |
| !! | TTTTGTTTCACGAGTAGGAG+AGG | - | chr1_4:45769306-45769325 | Msa0165320:CDS | 40.0% |
| AGAAAGAGAGTTGAGACAGT+TGG | - | chr1_4:45769330-45769349 | Msa0165320:CDS | 40.0% | |
| GGTGAGTGTGGAAAAAGATT+TGG | - | chr1_4:45769361-45769380 | Msa0165320:CDS | 40.0% | |
| GTGGCATTTAGTATGGGAAA+GGG | + | chr1_4:45769467-45769486 | None:intergenic | 40.0% | |
| ! | CTTTTTATTGTTCGTGCTGG+TGG | + | chr1_4:45769486-45769505 | None:intergenic | 40.0% |
| CACCAGCACGAACAATAAAA+AGG | - | chr1_4:45769484-45769503 | Msa0165320:five_prime_UTR | 40.0% | |
| ! | AGCCTTTTTATTGTTCGTGC+TGG | + | chr1_4:45769489-45769508 | None:intergenic | 40.0% |
| ! | CTAACCTGTGAATAGCTTTG+GGG | - | chr1_4:45769514-45769533 | Msa0165320:five_prime_UTR | 40.0% |
| GGAGACGAAGATGAATGAGA+TGG | + | chr1_4:45764154-45764173 | None:intergenic | 45.0% | |
| AGGTTGAAATCGACGAAGAG+CGG | + | chr1_4:45764330-45764349 | None:intergenic | 45.0% | |
| ACGTTGTTGAAGATTCTGGC+TGG | - | chr1_4:45764408-45764427 | Msa0165320:intron | 45.0% | |
| ! | CGTTGTTGAAGATTCTGGCT+GGG | - | chr1_4:45764409-45764428 | Msa0165320:intron | 45.0% |
| ! | GATACGCAGCTTGTTTGTAG+TGG | - | chr1_4:45764489-45764508 | Msa0165320:intron | 45.0% |
| GGTGATCTTGCTTATTTGGG+TGG | - | chr1_4:45764510-45764529 | Msa0165320:intron | 45.0% | |
| !! | TTAAGCATTCTAGGGCCGTT+TGG | - | chr1_4:45764802-45764821 | Msa0165320:intron | 45.0% |
| TATACTACTAATGGCCCGTC+TGG | + | chr1_4:45765013-45765032 | None:intergenic | 45.0% | |
| !! | CTCATACACTAAGTGCTGGT+TGG | + | chr1_4:45765348-45765367 | None:intergenic | 45.0% |
| CAACCAGCACTTAGTGTATG+AGG | - | chr1_4:45765346-45765365 | Msa0165320:intron | 45.0% | |
| CATTGAAGGACTCCATGCTA+TGG | + | chr1_4:45766267-45766286 | None:intergenic | 45.0% | |
| !! | TTGAAGGTGTTGATCCTGAC+AGG | - | chr1_4:45766449-45766468 | Msa0165320:intron | 45.0% |
| ATCAACTTGTCTCTCCTGTC+AGG | + | chr1_4:45766466-45766485 | None:intergenic | 45.0% | |
| ! | CGAATGCATAAGGTATCCGA+TGG | - | chr1_4:45766514-45766533 | Msa0165320:intron | 45.0% |
| CGTCGAGTGCAAATCTGTTT+GGG | - | chr1_4:45766544-45766563 | Msa0165320:intron | 45.0% | |
| TATTTCGAGAAAAGGTGGCC+AGG | + | chr1_4:45766695-45766714 | None:intergenic | 45.0% | |
| CCATTCGAGTAACAACATCC+AGG | + | chr1_4:45767392-45767411 | None:intergenic | 45.0% | |
| CCTGGATGTTGTTACTCGAA+TGG | - | chr1_4:45767389-45767408 | Msa0165320:intron | 45.0% | |
| CTTCAAGGAAGAATGTGAGC+AGG | - | chr1_4:45767425-45767444 | Msa0165320:intron | 45.0% | |
| ! | CTAAGCCTTTTTCCACCTAG+TGG | - | chr1_4:45767578-45767597 | Msa0165320:intron | 45.0% |
| ! | AAGCCTTTTTCCACCTAGTG+GGG | - | chr1_4:45767580-45767599 | Msa0165320:intron | 45.0% |
| ATATAACCAACCCCACTAGG+TGG | + | chr1_4:45767593-45767612 | None:intergenic | 45.0% | |
| CTCTTCATCATCCAGACACA+TGG | - | chr1_4:45768014-45768033 | Msa0165320:intron | 45.0% | |
| TCGATAGTATGCCATGTGTC+TGG | + | chr1_4:45768028-45768047 | None:intergenic | 45.0% | |
| ACAATAAAATCACGTGGGGC+TGG | - | chr1_4:45768361-45768380 | Msa0165320:intron | 45.0% | |
| CTCTTCCCGTTTGTAACCAA+GGG | + | chr1_4:45768429-45768448 | None:intergenic | 45.0% | |
| TCTCTTCCCGTTTGTAACCA+AGG | + | chr1_4:45768430-45768449 | None:intergenic | 45.0% | |
| CGGGAAGAGAAAGTAGACAA+AGG | - | chr1_4:45768440-45768459 | Msa0165320:intron | 45.0% | |
| ACAAAGGAAAGCAAGCACCA+TGG | - | chr1_4:45768456-45768475 | Msa0165320:intron | 45.0% | |
| CAAAGGAAAGCAAGCACCAT+GGG | - | chr1_4:45768457-45768476 | Msa0165320:intron | 45.0% | |
| AAGAGAGTTGAGACAGTTGG+TGG | - | chr1_4:45769333-45769352 | Msa0165320:CDS | 45.0% | |
| !! | TTGAGACAGTTGGTGGTGAT+TGG | - | chr1_4:45769340-45769359 | Msa0165320:CDS | 45.0% |
| GGTGGCATTTAGTATGGGAA+AGG | + | chr1_4:45769468-45769487 | None:intergenic | 45.0% | |
| ! | GTGCTGGTGGCATTTAGTAT+GGG | + | chr1_4:45769473-45769492 | None:intergenic | 45.0% |
| ATCACCCCAAAGCTATTCAC+AGG | + | chr1_4:45769521-45769540 | None:intergenic | 45.0% | |
| !! | GCTTTGGGGTGATTCTGATT+AGG | - | chr1_4:45769528-45769547 | Msa0165320:five_prime_UTR | 45.0% |
| ! | AGAGCGGTGGTTGTTGTTGT+TGG | + | chr1_4:45764314-45764333 | None:intergenic | 50.0% |
| TTGAAATCGACGAAGAGCGG+TGG | + | chr1_4:45764327-45764346 | None:intergenic | 50.0% | |
| TTCAACCTCCACGTTTCTCC+CGG | - | chr1_4:45764342-45764361 | Msa0165320:intron | 50.0% | |
| ! | GATTCTGGCTGGGAAGCATA+TGG | - | chr1_4:45764419-45764438 | Msa0165320:intron | 50.0% |
| TACTAATGGCCCGTCTGGAT+TGG | + | chr1_4:45765008-45765027 | None:intergenic | 50.0% | |
| GTCCCACTAGTGCTTATGCT+AGG | - | chr1_4:45765155-45765174 | Msa0165320:intron | 50.0% | |
| AGACAAGGTCTTCTGCAGCA+TGG | - | chr1_4:45765618-45765637 | Msa0165320:exon | 50.0% | |
| GACAAGGTCTTCTGCAGCAT+GGG | - | chr1_4:45765619-45765638 | Msa0165320:exon | 50.0% | |
| CTGCAGCATGGGTGAATGTT+AGG | - | chr1_4:45765630-45765649 | Msa0165320:exon | 50.0% | |
| TAAAACACGGTGGCCCACTT+CGG | - | chr1_4:45765902-45765921 | Msa0165320:CDS | 50.0% | |
| GAGATCTAAGGGTCCGAAGT+GGG | + | chr1_4:45765918-45765937 | None:intergenic | 50.0% | |
| AGAGATCTAAGGGTCCGAAG+TGG | + | chr1_4:45765919-45765938 | None:intergenic | 50.0% | |
| ! | AGGAGTCAGGGTGCAGTTTT+AGG | + | chr1_4:45766032-45766051 | None:intergenic | 50.0% |
| GATCAAAGCAAAGGCAGCAC+AGG | + | chr1_4:45766063-45766082 | None:intergenic | 50.0% | |
| TCTGCAGTGGCGAATGCATA+AGG | - | chr1_4:45766504-45766523 | Msa0165320:intron | 50.0% | |
| ! | ATAAGGTATCCGATGGGCAG+CGG | - | chr1_4:45766521-45766540 | Msa0165320:intron | 50.0% |
| GCGTCGAGTGCAAATCTGTT+TGG | - | chr1_4:45766543-45766562 | Msa0165320:intron | 50.0% | |
| !! | GGCATTTCAGGTTCTCTTGC+TGG | - | chr1_4:45767350-45767369 | Msa0165320:intron | 50.0% |
| TCAGGTTCTCTTGCTGGATG+AGG | - | chr1_4:45767356-45767375 | Msa0165320:intron | 50.0% | |
| GGATGAGGTAACAGTTGACC+TGG | - | chr1_4:45767371-45767390 | Msa0165320:intron | 50.0% | |
| GGATGTCCCCAATGCAAAAC+AGG | - | chr1_4:45767514-45767533 | Msa0165320:CDS | 50.0% | |
| CAACCCCACTAGGTGGAAAA+AGG | + | chr1_4:45767586-45767605 | None:intergenic | 50.0% | |
| ! | CTTTTTCCACCTAGTGGGGT+TGG | - | chr1_4:45767584-45767603 | Msa0165320:intron | 50.0% |
| GGAGACATGGGCAACTCATT+TGG | - | chr1_4:45767807-45767826 | Msa0165320:intron | 50.0% | |
| !! | TTGGTGGTGATTGGTGAGTG+TGG | - | chr1_4:45769349-45769368 | Msa0165320:CDS | 50.0% |
| GGGAAGTAGTTTCCCACCAT+AGG | + | chr1_4:45769447-45769466 | None:intergenic | 50.0% | |
| ! | CGTGCTGGTGGCATTTAGTA+TGG | + | chr1_4:45769474-45769493 | None:intergenic | 50.0% |
| TTGGACTCTGATTCCGCTCG+AGG | + | chr1_4:45764265-45764284 | None:intergenic | 55.0% | |
| TCGAGCGGAATCAGAGTCCA+AGG | - | chr1_4:45764264-45764283 | Msa0165320:intron | 55.0% | |
| ATCTGGATCCGGGAGAAACG+TGG | + | chr1_4:45764353-45764372 | None:intergenic | 55.0% | |
| ! | CTGGCTGGGAAGCATATGGT+TGG | - | chr1_4:45764423-45764442 | Msa0165320:intron | 55.0% |
| ! | GCTGGGAAGCATATGGTTGG+AGG | - | chr1_4:45764426-45764445 | Msa0165320:intron | 55.0% |
| CAGGTTAGCAGGAGGAGTCA+GGG | + | chr1_4:45766044-45766063 | None:intergenic | 55.0% | |
| ACAGGTTAGCAGGAGGAGTC+AGG | + | chr1_4:45766045-45766064 | None:intergenic | 55.0% | |
| CAAAGGCAGCACAGGTTAGC+AGG | + | chr1_4:45766055-45766074 | None:intergenic | 55.0% | |
| CAGGGAGACATTCCACTGCA+GGG | - | chr1_4:45766119-45766138 | Msa0165320:intron | 55.0% | |
| ACAGAGAAGTCTCCCTGCAG+TGG | + | chr1_4:45766134-45766153 | None:intergenic | 55.0% | |
| AGGACTCGACAACAGACAGC+AGG | + | chr1_4:45767906-45767925 | None:intergenic | 55.0% | |
| TGCTGTCTGTTGTCGAGTCC+TGG | - | chr1_4:45767905-45767924 | Msa0165320:intron | 55.0% | |
| ! | CTTTGTTTCAGCACGGAGCC+AGG | + | chr1_4:45767926-45767945 | None:intergenic | 55.0% |
| !! | AAATCACGTGGGGCTGGCTT+AGG | - | chr1_4:45768367-45768386 | Msa0165320:intron | 55.0% |
| TGGATCCGGGAGAAACGTGG+AGG | + | chr1_4:45764350-45764369 | None:intergenic | 60.0% | |
| !! | ACGAGGAGGCATCTGGATCC+GGG | + | chr1_4:45764363-45764382 | None:intergenic | 60.0% |
| !! | GACGAGGAGGCATCTGGATC+CGG | + | chr1_4:45764364-45764383 | None:intergenic | 60.0% |
| GGATCCAGATGCCTCCTCGT+CGG | - | chr1_4:45764363-45764382 | Msa0165320:intron | 60.0% | |
| !! | TGCCTCCTCGTCGGTGCTAA+CGG | - | chr1_4:45764372-45764391 | Msa0165320:intron | 60.0% |
| !! | ATCCGTTAGCACCGACGAGG+AGG | + | chr1_4:45764377-45764396 | None:intergenic | 60.0% |
| !! | CAGATCCGTTAGCACCGACG+AGG | + | chr1_4:45764380-45764399 | None:intergenic | 60.0% |
| !! | CTCGTCGGTGCTAACGGATC+TGG | - | chr1_4:45764378-45764397 | Msa0165320:intron | 60.0% |
| AGGCAGCACAGGTTAGCAGG+AGG | + | chr1_4:45766052-45766071 | None:intergenic | 60.0% | |
| CCTGCAGTGGAATGTCTCCC+TGG | + | chr1_4:45766121-45766140 | None:intergenic | 60.0% | |
| CCAGGGAGACATTCCACTGC+AGG | - | chr1_4:45766118-45766137 | Msa0165320:intron | 60.0% | |
| !! | AGCACCGACGAGGAGGCATC+TGG | + | chr1_4:45764370-45764389 | None:intergenic | 65.0% |
| CACTCGACGCCGCTGCCCAT+CGG | + | chr1_4:45766533-45766552 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45764059 | 45769625 | 45764059 | ID=Msa0165320;Name=Msa0165320 |
| chr1_4 | mRNA | 45764059 | 45769625 | 45764059 | ID=Msa0165320-mRNA-1;Parent=Msa0165320;Name=Msa0165320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=166|1|1|1|0.8|0.66|6|340|299 |
| chr1_4 | exon | 45764059 | 45764194 | 45764059 | ID=Msa0165320-mRNA-1:exon:13107;Parent=Msa0165320-mRNA-1 |
| chr1_4 | exon | 45765430 | 45765921 | 45765430 | ID=Msa0165320-mRNA-1:exon:13106;Parent=Msa0165320-mRNA-1 |
| chr1_4 | exon | 45766238 | 45766324 | 45766238 | ID=Msa0165320-mRNA-1:exon:13105;Parent=Msa0165320-mRNA-1 |
| chr1_4 | exon | 45767099 | 45767235 | 45767099 | ID=Msa0165320-mRNA-1:exon:13104;Parent=Msa0165320-mRNA-1 |
| chr1_4 | exon | 45767511 | 45767562 | 45767511 | ID=Msa0165320-mRNA-1:exon:13103;Parent=Msa0165320-mRNA-1 |
| chr1_4 | exon | 45769124 | 45769625 | 45769124 | ID=Msa0165320-mRNA-1:exon:13102;Parent=Msa0165320-mRNA-1 |
| chr1_4 | five_prime_UTR | 45769460 | 45769625 | 45769460 | ID=Msa0165320-mRNA-1:five_prime_utr;Parent=Msa0165320-mRNA-1 |
| chr1_4 | CDS | 45769124 | 45769459 | 45769124 | ID=Msa0165320-mRNA-1:cds;Parent=Msa0165320-mRNA-1 |
| chr1_4 | CDS | 45767511 | 45767562 | 45767511 | ID=Msa0165320-mRNA-1:cds;Parent=Msa0165320-mRNA-1 |
| chr1_4 | CDS | 45767099 | 45767235 | 45767099 | ID=Msa0165320-mRNA-1:cds;Parent=Msa0165320-mRNA-1 |
| chr1_4 | CDS | 45766238 | 45766324 | 45766238 | ID=Msa0165320-mRNA-1:cds;Parent=Msa0165320-mRNA-1 |
| chr1_4 | CDS | 45765634 | 45765921 | 45765634 | ID=Msa0165320-mRNA-1:cds;Parent=Msa0165320-mRNA-1 |
| chr1_4 | three_prime_UTR | 45765430 | 45765633 | 45765430 | ID=Msa0165320-mRNA-1:three_prime_utr;Parent=Msa0165320-mRNA-1 |
| chr1_4 | three_prime_UTR | 45764059 | 45764194 | 45764059 | ID=Msa0165320-mRNA-1:three_prime_utr;Parent=Msa0165320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
